Citrus Sinensis ID: 029252

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVIMF
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHcccEEEEccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccHHccEEEEEEEcccccHHHHHHHHHHHHccEEEEHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcHHHHHHHcccccEEEEEccccHcEEEEEc
Coil and Loop (DISEMBL)
mgtvvetpvkeadatvtvkkpTVVFvlggpgsgkgtqcaNIVEHfgythlsaGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEEsgndkflidgfprneenRAAFEAVTKIEPEFVLFFDCSEEEMERRILNrnqgreddnvETIRKRFKVFLESSLPVVQYYEAkgkvrkvifcspIFILVIMF
Flexible Loop (DISEMBL)
mgtvvetpvkeadatvtvkkptvvFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQnmikegkivpSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIlnrnqgreddnveTIRKRFKVFLESSLPVVQyyeakgkvrkviFCSPIFILVIMF
Low Complexity Region (SEG)
MGTVVETPVKEADAtvtvkkptvvfvLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVIMF
Disordered region (IsUnstruct)
*************ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK******TMIQNMIKEGKIVPSEVTIKLLQK*******DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE******************VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVIM*
Disordered Region (DISOPRED)
*********************TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS**ENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVIMF
Disordered Region (DISEMBL)
**********EADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVIMF
Disordered Region (DISPRO)
*************ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVIMF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVIMF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
O04905	202	UMP/CMP kinase OS=Arabido	yes	no	0.897	0.871	0.857	4e-86
O24464	231	Adenylate kinase OS=Prunu	N/A	no	0.918	0.779	0.607	7e-60
Q5ZKE7	196	UMP-CMP kinase OS=Gallus	yes	no	0.836	0.836	0.557	2e-46
Q7ZX23	193	UMP-CMP kinase OS=Xenopus	N/A	no	0.836	0.849	0.545	3e-46
Q28H12	196	UMP-CMP kinase OS=Xenopus	no	no	0.836	0.836	0.545	3e-45
Q7ZWE9	196	UMP-CMP kinase OS=Danio r	no	no	0.836	0.836	0.540	4e-45
P20425	195	UMP-CMP kinase OS=Dictyos	yes	no	0.826	0.830	0.572	3e-44
P15700	204	Uridylate kinase OS=Sacch	yes	no	0.821	0.789	0.517	4e-44
Q9DBP5	196	UMP-CMP kinase OS=Mus mus	yes	no	0.836	0.836	0.528	7e-44
Q4KM73	196	UMP-CMP kinase OS=Rattus	yes	no	0.836	0.836	0.528	9e-44

>sp|O04905|UMPK_ARATH UMP/CMP kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1

 Score =  317 bits (811), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 151/176 (85%), Positives = 164/176 (93%)

Query: 14  ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM 73
           A  + KKPTV+FVLGGPGSGKGTQCA IVEH+GYTHLSAGDLLRAEIKSGSENGTMIQNM
Sbjct: 7   ANGSGKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNM 66

Query: 74  IKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS 133
           IKEGKIVPSEVTIKLLQKA++E+GNDKFLIDGFPRNEENRAAFE VT+IEP+FVLFFDC 
Sbjct: 67  IKEGKIVPSEVTIKLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCP 126

Query: 134 EEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPI 189
           EEEME+R+L RNQGREDDN+ETIRKRFKVFLESSLPV+ YYEAKGKVRK+    PI
Sbjct: 127 EEEMEKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPI 182

Furnishes the cell with pyrimidines. Accepts UMP and CMP as phosphate acceptors with high activity; does not act on dCMP and dUMP.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 1EC: 4

>sp|O24464|KAD_PRUAR Adenylate kinase OS=Prunus armeniaca PE=2 SV=1

 Score =  229 bits (585), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 110/181 (60%), Positives = 138/181 (76%), Gaps = 1/181 (0%)

Query: 4   VVETPVKEADATVTVK-KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 62
           + ET   E++     K  P V FVLGGPGSGKGTQCA IVE FG+TH+SAGDLLR EI S
Sbjct: 29  IWETFTSESEIPTPSKGSPFVTFVLGGPGSGKGTQCAKIVEAFGFTHVSAGDLLRREIAS 88

Query: 63  GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI 122
           GS  G++I + I+EGKIVPS+VT++L+QK ME S N KFLIDGFPR+EENR AFE     
Sbjct: 89  GSAYGSVILSTIREGKIVPSQVTVELIQKEMESSDNYKFLIDGFPRSEENRKAFEQTIGA 148

Query: 123 EPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRK 182
           EP+ VLFFDC E+EM +R+LNRNQGR DDN++TI+KR ++F E + PV+ YY  +GK+ K
Sbjct: 149 EPDVVLFFDCPEQEMVKRVLNRNQGRVDDNIDTIKKRLEIFDELNWPVINYYSQRGKLHK 208

Query: 183 V 183
           +
Sbjct: 209 I 209

This small ubiquitous enzyme is essential for maintenance and cell growth.

Prunus armeniaca (taxid: 36596)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q5ZKE7|KCY_CHICK UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1

 Score =  184 bits (468), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/174 (55%), Positives = 121/174 (69%), Gaps = 10/174 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAGDLLR E K  GS+ G +I+N IKEG+
Sbjct: 2   KPVVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGDLLRDERKRPGSQYGELIENYIKEGE 61

Query: 79  IVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++AM++     S  +KFLIDGFPRNE+N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKRAMDQTMAANSQKNKFLIDGFPRNEDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           C  E    R L R +  GR DDN E++ KR   +L+S+ P++  YE  GKVR+V
Sbjct: 122 CDNEICIGRCLERGKSSGRSDDNRESLEKRIHTYLQSTRPIIDLYERMGKVRRV 175

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q7ZX23|KCY_XENLA UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=2

 Score =  184 bits (467), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 121/174 (69%), Gaps = 10/174 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++GK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGK 61

Query: 79  IVPSEVTIKLLQKAME-----ESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LLQ+AME     ++   KFLIDGFPRNE+N   +E     K +  FVLFFD
Sbjct: 62  IVPVEITISLLQRAMERTMAFDANKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           C  E    R L R +  GR DDN E++ KR + +L+S+ P++  YE +GKVRKV
Sbjct: 122 CDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKRGKVRKV 175

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q28H12|KCY_XENTR UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2 SV=2

 Score =  181 bits (459), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 122/174 (70%), Gaps = 10/174 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++G+
Sbjct: 2   KPFVVFVLGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGR 61

Query: 79  IVPSEVTIKLLQKAMEES----GN-DKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LLQ+AME++    GN  KFLIDGFPRNE+N   +E     K +  FVLFFD
Sbjct: 62  IVPVEITISLLQRAMEQTMALDGNKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           C  E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KV
Sbjct: 122 CDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKTGKVKKV 175

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q7ZWE9|KCY_DANRE UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2

 Score =  181 bits (458), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 125/174 (71%), Gaps = 10/174 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE++ YTHLSAGDLLR E  ++ SE G +I + IKEGK
Sbjct: 2   KPQVVFVLGGPGAGKGTQCARIVENYSYTHLSAGDLLREERSRTDSEFGQLIDSYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEESGND-----KFLIDGFPRNEENRAAF--EAVTKIEPEFVLFFD 131
           IVP ++TI LL+KAMEE+        +FLIDGFPRN++N   +  E   K + +FVLFFD
Sbjct: 62  IVPVQITINLLRKAMEETMKADEKKFRFLIDGFPRNQDNLQGWNTEMDGKADVKFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           CS E    R L R +  GR DDN E++ KR + +L+S+ P+++ YE +GKV+++
Sbjct: 122 CSNEVCIDRCLERGKSSGRTDDNRESLEKRIQTYLQSTRPIIELYEKQGKVQRI 175

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|P20425|KCY_DICDI UMP-CMP kinase OS=Dictyostelium discoideum GN=pyrK PE=1 SV=2

 Score =  178 bits (451), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 95/166 (57%), Positives = 121/166 (72%), Gaps = 4/166 (2%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
           KP VVFVLGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+I
Sbjct: 6   KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEI 65

Query: 80  VPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEM 137
           VPS VT+KLL+ A++ +    FL+DGFPRNEEN  ++E   K  ++ +FVLFFDC EE M
Sbjct: 66  VPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVM 125

Query: 138 ERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR 181
            +R+L R +  GR DDN+E+I+KRF  F   +  V+ +Y    KV+
Sbjct: 126 TQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVK 171

This UMP-CMP kinase uses preferentially ATP as phosphate donor and is specific for UMP and CMP.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|P15700|UMPK_YEAST Uridylate kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=URA6 PE=1 SV=1

 Score =  177 bits (449), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 123/168 (73%), Gaps = 7/168 (4%)

Query: 22  TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIV 80
           +V+FVLGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+ G +I+N IKEG+IV
Sbjct: 17  SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIV 76

Query: 81  PSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137
           P E+T+ LL+ A+ +   +   KFLIDGFPR  +   +FE    +E +F+LFFDC E+ M
Sbjct: 77  PQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIM 135

Query: 138 ERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
             R+L R +  GR DDN+E+I+KRF  F E+S+PV++Y+E K KV +V
Sbjct: 136 LERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRV 183

Furnishes the cell with pyrimidines. Accepts UMP, and dUMP as phosphate acceptors with high activity; to a lesser extent, it can also use IMP, GMP, dGMP, 5-iodo-dUMP, XMP, and dTMP as substrates. ATP and dATP are the best phosphate donors; can use GTP, dGTP, dCTP, and dTTP to some degree (30-50%).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: -

>sp|Q9DBP5|KCY_MOUSE UMP-CMP kinase OS=Mus musculus GN=Cmpk1 PE=1 SV=1

 Score =  176 bits (447), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 121/174 (69%), Gaps = 10/174 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           C+ E    R L R +  GR DDN E++ KR + +LES+ P++  YE  GKV+K+
Sbjct: 122 CNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKI 175

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q4KM73|KCY_RAT UMP-CMP kinase OS=Rattus norvegicus GN=Cmpk1 PE=1 SV=2

 Score =  176 bits (446), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 121/174 (69%), Gaps = 10/174 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           C+ E    R L R +  GR DDN E++ KR + +LES+ P++  YE  GKV+K+
Sbjct: 122 CNNEICIDRCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKI 175

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
255571119	210	uridylate kinase plant, putative [Ricinu	0.923	0.861	0.878	6e-88
224136530	199	predicted protein [Populus trichocarpa]	0.872	0.859	0.918	2e-87
118488800	199	unknown [Populus trichocarpa]	0.872	0.859	0.912	8e-87
351721579	207	uncharacterized protein LOC100500111 [Gl	0.959	0.908	0.835	2e-86
351726572	237	uncharacterized protein LOC100306603 [Gl	0.959	0.793	0.830	3e-86
357513083	208	Uridylate kinase [Medicago truncatula] g	0.964	0.908	0.804	4e-86
225454048	210	PREDICTED: uridylate kinase isoform 1 [V	0.933	0.871	0.847	2e-85
449432344	209	PREDICTED: UMP/CMP kinase-like [Cucumis	0.964	0.904	0.8	2e-85
224067399	199	predicted protein [Populus trichocarpa]	0.841	0.829	0.915	3e-85
30690246	202	Uridylate kinase [Arabidopsis thaliana]	0.897	0.871	0.857	2e-84

>gi|255571119|ref|XP_002526510.1| uridylate kinase plant, putative [Ricinus communis] gi|223534185|gb|EEF35901.1| uridylate kinase plant, putative [Ricinus communis]

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 159/181 (87%), Positives = 170/181 (93%)

Query: 3   TVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 62
           +VV    KE +  V  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS
Sbjct: 4   SVVGVARKEENGDVVEKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 63

Query: 63  GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI 122
           GSENGTMIQNMIKEGKIVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFE+VTKI
Sbjct: 64  GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFESVTKI 123

Query: 123 EPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRK 182
            PEFVLFFDCSEEEMERR+L+RNQGR DDN+ETIRKRFKVFLESS+PVV+YYE+KGKVRK
Sbjct: 124 VPEFVLFFDCSEEEMERRLLSRNQGRVDDNIETIRKRFKVFLESSIPVVEYYESKGKVRK 183

Query: 183 V 183
           +
Sbjct: 184 I 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136530|ref|XP_002326883.1| predicted protein [Populus trichocarpa] gi|222835198|gb|EEE73633.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 157/171 (91%), Positives = 165/171 (96%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK
Sbjct: 9   KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 68

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVTIKLLQKAM++SGNDKFLIDGFPRNEENRAAFEAVTKIEP FVLFFDC EEEME
Sbjct: 69  IVPSEVTIKLLQKAMQDSGNDKFLIDGFPRNEENRAAFEAVTKIEPAFVLFFDCPEEEME 128

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPI 189
           RRIL+RNQGREDDN+ETIRKRFKVFLESSLPVV+YY++KGKV+KV    PI
Sbjct: 129 RRILSRNQGREDDNIETIRKRFKVFLESSLPVVEYYDSKGKVQKVDAAKPI 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488800|gb|ABK96210.1| unknown [Populus trichocarpa]

 Score =  325 bits (832), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 156/171 (91%), Positives = 164/171 (95%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK
Sbjct: 9   KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 68

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVTI LLQKAM++SGNDKFLIDGFPRNEENRAAFEAVTKIEP FVLFFDC EEEME
Sbjct: 69  IVPSEVTINLLQKAMQDSGNDKFLIDGFPRNEENRAAFEAVTKIEPAFVLFFDCPEEEME 128

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPI 189
           RRIL+RNQGREDDN+ETIRKRFKVFLESSLPVV+YY++KGKV+KV    PI
Sbjct: 129 RRILSRNQGREDDNIETIRKRFKVFLESSLPVVEYYDSKGKVQKVDAAKPI 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721579|ref|NP_001236958.1| uncharacterized protein LOC100500111 [Glycine max] gi|255629285|gb|ACU14987.1| unknown [Glycine max]

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 158/189 (83%), Positives = 172/189 (91%), Gaps = 1/189 (0%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MGTV E   K+A+ ++  K PTVVFVLGGPGSGKGTQCANIVE+FGYTHLSAGDLLRAEI
Sbjct: 1   MGTV-EAANKDANGSLLEKNPTVVFVLGGPGSGKGTQCANIVENFGYTHLSAGDLLRAEI 59

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
           KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFE VT
Sbjct: 60  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEKVT 119

Query: 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
            IEP FVLFF+C EEEMERR+L+RNQGREDDN+ETIR+RFKVFLESSLPV+ YY+AKGKV
Sbjct: 120 GIEPAFVLFFECPEEEMERRLLSRNQGREDDNIETIRRRFKVFLESSLPVINYYDAKGKV 179

Query: 181 RKVIFCSPI 189
           RK+    PI
Sbjct: 180 RKIDAARPI 188

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726572|ref|NP_001237387.1| uncharacterized protein LOC100306603 [Glycine max] gi|255629041|gb|ACU14865.1| unknown [Glycine max]

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 157/189 (83%), Positives = 171/189 (90%), Gaps = 1/189 (0%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MGTV E   K+A+ ++  K P+VVFVLGGPGSGKGTQCANIV++FGYTHLSAGDLLRAEI
Sbjct: 1   MGTV-EAANKDANGSLLEKNPSVVFVLGGPGSGKGTQCANIVQNFGYTHLSAGDLLRAEI 59

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
           KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFE VT
Sbjct: 60  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEKVT 119

Query: 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
            IEP FVLFFDC EEEMERR+L+RNQGREDDN+ETIRKRFKVFLESSLPV+ YY+AKGKV
Sbjct: 120 GIEPAFVLFFDCPEEEMERRLLSRNQGREDDNIETIRKRFKVFLESSLPVINYYDAKGKV 179

Query: 181 RKVIFCSPI 189
            K+    PI
Sbjct: 180 HKIDAARPI 188

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513083|ref|XP_003626830.1| Uridylate kinase [Medicago truncatula] gi|217075148|gb|ACJ85934.1| unknown [Medicago truncatula] gi|355520852|gb|AET01306.1| Uridylate kinase [Medicago truncatula] gi|388507198|gb|AFK41665.1| unknown [Medicago truncatula]

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 152/189 (80%), Positives = 172/189 (91%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MGTV+E   K+ + +V  K PTVVFVLGGPGSGKGTQCAN+VEHFG+THLSAGDLLRAEI
Sbjct: 1   MGTVIEAANKDTNGSVLNKNPTVVFVLGGPGSGKGTQCANVVEHFGFTHLSAGDLLRAEI 60

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
           KSGSENGTMIQNMIKEGKIVPSEVTI+LLQ+A++++GNDKFLIDGFPRNEENRAAFE VT
Sbjct: 61  KSGSENGTMIQNMIKEGKIVPSEVTIRLLQQAIKDNGNDKFLIDGFPRNEENRAAFERVT 120

Query: 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
            IEP FVL+FDC EEEMERR+L+RNQGREDDN+ETIRKRFKVFL+SSLPV+ YY+AKGKV
Sbjct: 121 GIEPAFVLYFDCPEEEMERRLLSRNQGREDDNIETIRKRFKVFLDSSLPVINYYDAKGKV 180

Query: 181 RKVIFCSPI 189
           RKV    P+
Sbjct: 181 RKVDAARPV 189

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454048|ref|XP_002263322.1| PREDICTED: uridylate kinase isoform 1 [Vitis vinifera] gi|359489116|ref|XP_003633878.1| PREDICTED: uridylate kinase isoform 2 [Vitis vinifera] gi|359489119|ref|XP_003633879.1| PREDICTED: uridylate kinase isoform 3 [Vitis vinifera] gi|297744838|emb|CBI38106.3| unnamed protein product [Vitis vinifera]

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/184 (84%), Positives = 169/184 (91%), Gaps = 1/184 (0%)

Query: 1   MGTVVETPVKEADATVTV-KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59
           MG+  E+ +KE +  +   KK  VVFVLGGPGSGKGTQCANIV+HFGYTHLSAGDLLRAE
Sbjct: 1   MGSAPESVIKETNENLLAEKKVKVVFVLGGPGSGKGTQCANIVKHFGYTHLSAGDLLRAE 60

Query: 60  IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV 119
           IKSGSENG MIQ+MIKEGKIVPSEVTIKLLQ+A+ E  NDKFLIDGFPRNEENRAAFEAV
Sbjct: 61  IKSGSENGNMIQSMIKEGKIVPSEVTIKLLQRAILEDSNDKFLIDGFPRNEENRAAFEAV 120

Query: 120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179
           TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV++YYE+KGK
Sbjct: 121 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVIEYYESKGK 180

Query: 180 VRKV 183
           VRK+
Sbjct: 181 VRKI 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432344|ref|XP_004133959.1| PREDICTED: UMP/CMP kinase-like [Cucumis sativus] gi|449515542|ref|XP_004164808.1| PREDICTED: UMP/CMP kinase-like [Cucumis sativus]

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 152/190 (80%), Positives = 173/190 (91%), Gaps = 1/190 (0%)

Query: 1   MGTVVET-PVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59
           MGTVV+  P+KE + ++  KKPTVVFVLGGPGSGKGTQCANIV+HFGYTHLSAGDLLRAE
Sbjct: 1   MGTVVDAAPIKETNGSLAEKKPTVVFVLGGPGSGKGTQCANIVQHFGYTHLSAGDLLRAE 60

Query: 60  IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV 119
           IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ+A+EE+GN+KFLIDGFPRNEENRAAFE V
Sbjct: 61  IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQRAIEETGNEKFLIDGFPRNEENRAAFEVV 120

Query: 120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179
           T IEP  VLFFDC EEEME+R+L+RN+GR DDN+ETIRKRF+VFLESS+PV+QYYE+K K
Sbjct: 121 TGIEPSIVLFFDCPEEEMEKRLLSRNEGRVDDNIETIRKRFRVFLESSIPVIQYYESKEK 180

Query: 180 VRKVIFCSPI 189
           VRK+    P+
Sbjct: 181 VRKIDAARPV 190

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067399|ref|XP_002302480.1| predicted protein [Populus trichocarpa] gi|118488191|gb|ABK95915.1| unknown [Populus trichocarpa] gi|222844206|gb|EEE81753.1| predicted protein [Populus trichocarpa]

 Score =  319 bits (818), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 151/165 (91%), Positives = 161/165 (97%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KKP V+FVLGGPGSGKGTQCAN+VEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK
Sbjct: 9   KKPAVIFVLGGPGSGKGTQCANVVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 68

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFEAVTKIEP FVLFF+C EEEME
Sbjct: 69  IVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEAVTKIEPAFVLFFNCPEEEME 128

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           +RIL+RNQGREDDN+ETIRKRF VFLESSLPVV+YY++KGKVRKV
Sbjct: 129 KRILSRNQGREDDNIETIRKRFNVFLESSLPVVEYYDSKGKVRKV 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690246|ref|NP_850868.1| Uridylate kinase [Arabidopsis thaliana] gi|79328724|ref|NP_001031942.1| Uridylate kinase [Arabidopsis thaliana] gi|2497486|sp|O04905.1|UMPK_ARATH RecName: Full=UMP/CMP kinase; Short=UMP/CMPK; AltName: Full=Uridine monophosphate/cytidine monophosphate kinase; AltName: Full=Uridylate kinase; Short=UK gi|2121275|gb|AAB71135.1| UMP/CMP kinase [Arabidopsis thaliana] gi|332006176|gb|AED93559.1| Uridylate kinase [Arabidopsis thaliana] gi|332006177|gb|AED93560.1| Uridylate kinase [Arabidopsis thaliana]

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 151/176 (85%), Positives = 164/176 (93%)

Query: 14  ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM 73
           A  + KKPTV+FVLGGPGSGKGTQCA IVEH+GYTHLSAGDLLRAEIKSGSENGTMIQNM
Sbjct: 7   ANGSGKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNM 66

Query: 74  IKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS 133
           IKEGKIVPSEVTIKLLQKA++E+GNDKFLIDGFPRNEENRAAFE VT+IEP+FVLFFDC 
Sbjct: 67  IKEGKIVPSEVTIKLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCP 126

Query: 134 EEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPI 189
           EEEME+R+L RNQGREDDN+ETIRKRFKVFLESSLPV+ YYEAKGKVRK+    PI
Sbjct: 127 EEEMEKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPI 182

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:1005716878	208	PYR6 [Arabidopsis thaliana (ta	0.831	0.783	0.877	1.5e-74
TAIR|locus:2101472	204	AT3G60180 [Arabidopsis thalian	0.933	0.897	0.704	9.2e-68
TAIR|locus:2122644	249	AT4G25280 [Arabidopsis thalian	0.785	0.618	0.662	1.3e-52
TAIR|locus:4515103290	136	AT3G60961 [Arabidopsis thalian	0.566	0.816	0.739	3.5e-43
DICTYBASE|DDB_G0287495	195	pyrK "uridine monophosphate/cy	0.801	0.805	0.561	3.2e-42
UNIPROTKB|G4MTX2	329	MGG_01594 "Uridylate kinase" [	0.795	0.474	0.540	7.5e-41
UNIPROTKB|Q5ZKE7	196	CMPK1 "UMP-CMP kinase" [Gallus	0.801	0.801	0.544	1.2e-40
SGD|S000001507	204	URA6 "Uridylate kinase" [Sacch	0.795	0.764	0.515	2e-40
ZFIN|ZDB-GENE-040426-2113	225	cmpk "cytidylate kinase" [Dani	0.801	0.697	0.532	6.8e-40
FB|FBgn0028833	304	Dak1 "Dak1" [Drosophila melano	0.801	0.516	0.490	1.8e-39

TAIR|locus:1005716878 PYR6 [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 143/163 (87%), Positives = 154/163 (94%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
             LGGPGSGKGTQCA IVEH+GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI
Sbjct:    20 LGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 79

Query:    87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146
             KLLQKA++E+GNDKFLIDGFPRNEENRAAFE VT+IEP+FVLFFDC EEEME+R+L RNQ
Sbjct:    80 KLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCPEEEMEKRLLGRNQ 139

Query:   147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPI 189
             GREDDN+ETIRKRFKVFLESSLPV+ YYEAKGKVRK+    PI
Sbjct:   140 GREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPI 182

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=ISS;IDA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0004127 "cytidylate kinase activity" evidence=IDA

GO:0009173 "pyrimidine ribonucleoside monophosphate metabolic process" evidence=TAS

TAIR|locus:2101472 AT3G60180 [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 129/183 (70%), Positives = 151/183 (82%)

Query:     1 MGTVVETPVKEADAXXXXXXXXXXXXLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
             M T ++ P K+               LGGPGSGKGTQCAN+V+HF YTH SAGDLLRAEI
Sbjct:     1 METPIDAPNKDEHECPRWKKSTVVFVLGGPGSGKGTQCANVVKHFSYTHFSAGDLLRAEI 60

Query:    61 KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
             KSGSE G MIQ+MI EG+IVPSE+T+KLL KAMEESGNDKFLIDGFPRNEENR  FE V 
Sbjct:    61 KSGSEFGAMIQSMIAEGRIVPSEITVKLLCKAMEESGNDKFLIDGFPRNEENRNVFENVA 120

Query:   121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
             +IEP FVLFFDC EEE+ERRI++RNQGREDDN+ETI+KRFKVF+ES+LP++ YYE+KGK+
Sbjct:   121 RIEPAFVLFFDCPEEELERRIMSRNQGREDDNIETIKKRFKVFVESTLPIISYYESKGKL 180

Query:   181 RKV 183
             RK+
Sbjct:   181 RKI 183

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2122644 AT4G25280 [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 102/154 (66%), Positives = 122/154 (79%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
             LGGPGSGKGTQC  IVE FG  HLSAGDLLR EI   +ENG MI N+IK+GKIVPSEVT+
Sbjct:    49 LGGPGSGKGTQCEKIVETFGLQHLSAGDLLRREIAMHTENGAMILNLIKDGKIVPSEVTV 108

Query:    87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146
             KL+QK +E S N KFLIDGFPR EENR AFE + + +P+ VLFFDC EEEM +R+LNRNQ
Sbjct:   109 KLIQKELESSDNRKFLIDGFPRTEENRVAFERIIRADPDVVLFFDCPEEEMVKRVLNRNQ 168

Query:   147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
             GR DDN+ T++KR K+F   + PV+ YY+ KGK+
Sbjct:   169 GRIDDNITTMKKRLKIFNALNRPVIDYYKNKGKL 202

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:4515103290 AT3G60961 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 85/115 (73%), Positives = 102/115 (88%)

Query:    73 MIKEGKIVPSEVTIKLLQKAMEES----GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVL 128
             MI EG+IVPSE+T+KLL KAMEES    GNDKFLIDGFPRNEENR  FE V +IEP FVL
Sbjct:     1 MIAEGRIVPSEITVKLLCKAMEESFQVSGNDKFLIDGFPRNEENRIVFENVARIEPAFVL 60

Query:   129 FFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
             FFDC EEE+ERRI++RNQGREDDN+ETI+KRFKVF+ES+LP++ YY++KGK+RK+
Sbjct:    61 FFDCPEEELERRIMSRNQGREDDNIETIKKRFKVFVESTLPIISYYQSKGKLRKI 115

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

DICTYBASE|DDB_G0287495 pyrK "uridine monophosphate/cytidine monophosphate kinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 91/162 (56%), Positives = 117/162 (72%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
             LGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+IVPS VT+
Sbjct:    13 LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTV 72

Query:    87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
             KLL+ A++ +    FL+DGFPRNEEN  ++E   K  ++ +FVLFFDC EE M +R+L R
Sbjct:    73 KLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKR 132

Query:   145 NQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVI 184
              +  GR DDN+E+I+KRF  F   +  V+ +Y    KV K+I
Sbjct:   133 GESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKV-KII 173

GO:0043100 "pyrimidine nucleobase salvage" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0046705 "CDP biosynthetic process" evidence=IDA

GO:0043173 "nucleotide salvage" evidence=IDA

GO:0033862 "UMP kinase activity" evidence=IDA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA;IDA

GO:0006225 "UDP biosynthetic process" evidence=IDA

GO:0005622 "intracellular" evidence=IC

GO:0004127 "cytidylate kinase activity" evidence=IEA;IDA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|G4MTX2 MGG_01594 "Uridylate kinase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 93/172 (54%), Positives = 120/172 (69%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA +VE +G+THLSAGDLLRAE  + GS+ G +I++ I+ G IVP EVT
Sbjct:   134 LGGPGAGKGTQCAQLVERYGFTHLSAGDLLRAEQERPGSQFGELIKDCIRNGAIVPMEVT 193

Query:    86 IKLLQKAM----EE--------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS 133
             ++LL+ AM    EE        S   KFLIDGFPR  +    FE  T    +FVLF+DC 
Sbjct:   194 VQLLENAMTDVVEENKKKSRNGSSKAKFLIDGFPRKMDQALKFEE-TVCPAKFVLFYDCP 252

Query:   134 EEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
             E EMERR+L R +  GR DDN E+IRKRF+ F+E+S+PVV +YE + +V K+
Sbjct:   253 EAEMERRLLERGKTSGRADDNAESIRKRFRTFIETSMPVVDHYEKENRVVKI 304

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5ZKE7 CMPK1 "UMP-CMP kinase" [Gallus gallus (taxid:9031)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 91/167 (54%), Positives = 115/167 (68%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE +GYTHLSAGDLLR E K  GS+ G +I+N IKEG+IVP E+T
Sbjct:     9 LGGPGAGKGTQCARIVEKYGYTHLSAGDLLRDERKRPGSQYGELIENYIKEGEIVPVEIT 68

Query:    86 IKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
             I LL++AM++     S  +KFLIDGFPRNE+N   +      K +  FVLFFDC  E   
Sbjct:    69 ISLLKRAMDQTMAANSQKNKFLIDGFPRNEDNLQGWNKTMDGKADVSFVLFFDCDNEICI 128

Query:   139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
              R L R +  GR DDN E++ KR   +L+S+ P++  YE  GKVR+V
Sbjct:   129 GRCLERGKSSGRSDDNRESLEKRIHTYLQSTRPIIDLYERMGKVRRV 175

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

SGD|S000001507 URA6 "Uridylate kinase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 84/163 (51%), Positives = 118/163 (72%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+ G +I+N IKEG+IVP E+T
Sbjct:    22 LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEIT 81

Query:    86 IKLLQKAMEES---GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
             + LL+ A+ ++      KFLIDGFPR  +   +FE    +E +F+LFFDC E+ M  R+L
Sbjct:    82 LALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIMLERLL 140

Query:   143 NRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
              R +  GR DDN+E+I+KRF  F E+S+PV++Y+E K KV +V
Sbjct:   141 ERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRV 183

GO:0000166 "nucleotide binding" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=IMP;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA;IDA

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IDA

GO:0004017 "adenylate kinase activity" evidence=IGI;IDA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-2113 cmpk "cytidylate kinase" [Danio rerio (taxid:7955)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 89/167 (53%), Positives = 121/167 (72%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE++ YTHLSAGDLLR E  ++ SE G +I + IKEGKIVP ++T
Sbjct:    38 LGGPGAGKGTQCARIVENYSYTHLSAGDLLREERSRTDSEFGQLIDSYIKEGKIVPVQIT 97

Query:    86 IKLLQKAMEES--GNDK---FLIDGFPRNEENRAAF--EAVTKIEPEFVLFFDCSEEEME 138
             I LL+KAMEE+   ++K   FLIDGFPRN++N   +  E   K + +FVLFFDCS E   
Sbjct:    98 INLLRKAMEETMKADEKKFRFLIDGFPRNQDNLQGWNTEMDGKADVKFVLFFDCSNEVCI 157

Query:   139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
              R L R +  GR DDN E++ KR + +L+S+ P+++ YE +GKV+++
Sbjct:   158 DRCLERGKSSGRTDDNRESLEKRIQTYLQSTRPIIELYEKQGKVQRI 204

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0028833 Dak1 "Dak1" [Drosophila melanogaster (taxid:7227)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 80/163 (49%), Positives = 116/163 (71%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQC+ IV+ F +THLSAGDLLR E  + GSE G +I++ I+ GKIVP EVT
Sbjct:   120 LGGPGAGKGTQCSRIVDRFQFTHLSAGDLLREERSREGSEFGNLIEDYIRNGKIVPVEVT 179

Query:    86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAF--EAVTKIEPEFVLFFDCSEEEMERRILN 143
               LL+ AM+ SG  +FLIDGFPRN++N   +  +   K++ +FVLFFDC E+   +R L 
Sbjct:   180 CSLLENAMKASGKSRFLIDGFPRNQDNLDGWNRQMSEKVDFQFVLFFDCGEDVCVKRCLG 239

Query:   144 RNQ---GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
             R Q   GR DDN+++++KR   +   SLP+++++E   +V+++
Sbjct:   240 RGQSGSGRTDDNLDSLKKRISTYNNDSLPIIKFFEGAAQVKRI 282

GO:0004127 "cytidylate kinase activity" evidence=ISS;IDA;NAS

GO:0009041 "uridylate kinase activity" evidence=IDA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7ZX23	KCY_XENLA	2, ., 7, ., 4, ., 1, 4	0.5459	0.8367	0.8497	N/A	no
Q89ZJ0	KAD_BACTN	2, ., 7, ., 4, ., 3	0.3727	0.8010	0.8306	yes	no
Q5LGH0	KAD_BACFN	2, ., 7, ., 4, ., 3	0.3795	0.8163	0.8465	yes	no
Q5ZKE7	KCY_CHICK	2, ., 7, ., 4, ., 1, 4	0.5574	0.8367	0.8367	yes	no
B9L9Y8	KAD_NAUPA	2, ., 7, ., 4, ., 3	0.4060	0.8061	0.8229	yes	no
B4SI37	KAD_STRM5	2, ., 7, ., 4, ., 3	0.3674	0.8163	0.8556	yes	no
Q2KIW9	KCY_BOVIN	2, ., 7, ., 4, ., 1, 4	0.5229	0.8367	0.8367	yes	no
Q8P5P5	KAD_XANCP	2, ., 7, ., 4, ., 3	0.3795	0.8163	0.8556	yes	no
P15700	UMPK_YEAST	2, ., 7, ., 4, ., -	0.5178	0.8214	0.7892	yes	no
Q64XA6	KAD_BACFR	2, ., 7, ., 4, ., 3	0.3795	0.8163	0.8465	yes	no
Q4KM73	KCY_RAT	2, ., 7, ., 4, ., 1, 4	0.5287	0.8367	0.8367	yes	no
Q8PH23	KAD_XANAC	2, ., 7, ., 4, ., 3	0.3795	0.8163	0.8556	yes	no
B0RP52	KAD_XANCB	2, ., 7, ., 4, ., 3	0.3795	0.8163	0.8556	yes	no
Q2P743	KAD_XANOM	2, ., 7, ., 4, ., 3	0.3795	0.8163	0.8556	yes	no
B2RIY8	KAD_PORG3	2, ., 7, ., 4, ., 3	0.3604	0.8469	0.8556	yes	no
Q9DBP5	KCY_MOUSE	2, ., 7, ., 4, ., 1, 4	0.5287	0.8367	0.8367	yes	no
O04905	UMPK_ARATH	2, ., 7, ., 4, ., 1, 4	0.8579	0.8979	0.8712	yes	no
A6L0Z9	KAD_BACV8	2, ., 7, ., 4, ., 3	0.4023	0.8010	0.8306	yes	no
Q29561	KCY_PIG	2, ., 7, ., 4, ., 1, 4	0.5114	0.8367	0.8367	yes	no
P20425	KCY_DICDI	2, ., 7, ., 4, ., 1, 4	0.5722	0.8265	0.8307	yes	no
A5GVX9	KAD_SYNR3	2, ., 7, ., 4, ., 3	0.3647	0.8316	0.8956	yes	no
O59771	UMPK_SCHPO	2, ., 7, ., 4, ., -	0.4698	0.8061	0.8272	yes	no
Q3BPM9	KAD_XANC5	2, ., 7, ., 4, ., 3	0.3795	0.8163	0.8556	yes	no
Q4UYC6	KAD_XANC8	2, ., 7, ., 4, ., 3	0.3795	0.8163	0.8556	yes	no
Q7MW54	KAD_PORGI	2, ., 7, ., 4, ., 3	0.3604	0.8469	0.8556	yes	no
Q5H4A4	KAD_XANOR	2, ., 7, ., 4, ., 3	0.3795	0.8163	0.8556	yes	no
Q6A6Q4	KAD_PROAC	2, ., 7, ., 4, ., 3	0.3296	0.8367	0.8677	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.921
4th Layer	2.7.4.14	0.914
3rd Layer	2.7.4.3	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_400378	SubName- Full=Putative uncharacterized protein; (200 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00400106	RecName- Full=Nucleoside diphosphate kinase; EC=2.7.4.6; (149 aa)						•	•		0.904
	eugene3.00051017	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (810 aa)						•			0.904
	fgenesh4_pm.C_LG_V000114	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (817 aa)						•			0.904
	estExt_fgenesh4_pg.C_LG_VII0648	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (813 aa)						•			0.904
	fgenesh4_pg.C_LG_XII000913	hypothetical protein (152 aa)						•	•		0.903
	fgenesh4_pg.C_LG_I002334	ribonucleoside-diphosphate reductase (EC-1.17.4.1) (329 aa)						•			0.903
	estExt_Genewise1_v1.C_880196	ribonucleoside-diphosphate reductase (EC-1.17.4.1) (329 aa)						•			0.903
	gw1.VIII.327.1	ribonucleoside-diphosphate reductase (EC-1.17.4.1) (342 aa)						•			0.902
	gw1.II.1445.1	SubName- Full=Putative uncharacterized protein; (164 aa)						•	•		0.902
	gw1.XIII.2192.1	polyribonucleotide nucleotidyltransferase (EC-2.7.7.8) (853 aa)						•	•		0.901

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
TIGR01359	183	TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family	9e-98
PLN02200	234	PLN02200, PLN02200, adenylate kinase family protei	2e-84
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	2e-64
TIGR01360	188	TIGR01360, aden_kin_iso1, adenylate kinase, isozym	3e-60
pfam00406	186	pfam00406, ADK, Adenylate kinase	4e-60
TIGR01351	210	TIGR01351, adk, adenylate kinase	5e-48
PRK00279	215	PRK00279, adk, adenylate kinase; Reviewed	4e-46
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	2e-41
PRK14527	191	PRK14527, PRK14527, adenylate kinase; Provisional	5e-35
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	1e-33
PRK14531	183	PRK14531, PRK14531, adenylate kinase; Provisional	5e-32
PRK14532	188	PRK14532, PRK14532, adenylate kinase; Provisional	7e-29
PRK14530	215	PRK14530, PRK14530, adenylate kinase; Provisional	2e-28
PRK14528	186	PRK14528, PRK14528, adenylate kinase; Provisional	5e-28
PLN02459	261	PLN02459, PLN02459, probable adenylate kinase	6e-25
PLN02842	505	PLN02842, PLN02842, nucleotide kinase	1e-21
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	5e-21
PRK14526	211	PRK14526, PRK14526, adenylate kinase; Provisional	7e-17
PLN02674	244	PLN02674, PLN02674, adenylate kinase	1e-16
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	2e-15
PRK14529	223	PRK14529, PRK14529, adenylate kinase; Provisional	7e-15
pfam13207	114	pfam13207, AAA_17, AAA domain	5e-09
pfam13671	143	pfam13671, AAA_33, AAA domain	3e-06
pfam13238	128	pfam13238, AAA_18, AAA domain	2e-05
cd02020	147	cd02020, CMPK, Cytidine monophosphate kinase (CMPK	5e-05
PRK04182	180	PRK04182, PRK04182, cytidylate kinase; Provisional	2e-04
COG1102	179	COG1102, Cmk, Cytidylate kinase [Nucleotide transp	4e-04
TIGR02173	171	TIGR02173, cyt_kin_arch, cytidylate kinase, putati	0.002

>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family

 Score =  280 bits (719), Expect = 9e-98
 Identities = 110/165 (66%), Positives = 138/165 (83%), Gaps = 4/165 (2%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           VVFVLGGPGSGKGTQCA IVE+FG+THLSAGDLLRAEIKSGSENG +I++MIK GKIVPS
Sbjct: 1   VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPS 60

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERR 140
           EVT+KLL+ A++  G+ KFLIDGFPRNEEN  A+E +   K+  +FVLFFDC EE M +R
Sbjct: 61  EVTVKLLKNAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKR 120

Query: 141 ILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           +L R Q  GR DDN+E+I+KRF+ + E +LPV+++YE KGKV+++
Sbjct: 121 LLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEI 165

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183

>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein

 Score =  249 bits (636), Expect = 2e-84
 Identities = 113/165 (68%), Positives = 129/165 (78%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           K P + FVLGGPGSGKGTQC  IVE FG+ HLSAGDLLR EI S SE+G MI N IKEGK
Sbjct: 41  KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGK 100

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVT+KL+QK ME S N+KFLIDGFPR EENR AFE +   EP  VLFFDC EEEM 
Sbjct: 101 IVPSEVTVKLIQKEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMV 160

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           +R+LNRNQGR DDN++TI+KR KVF   +LPV+ YY  KGK+  +
Sbjct: 161 KRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTI 205

Length = 234

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score =  197 bits (502), Expect = 2e-64
 Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 24/185 (12%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
            + +LG PGSGKGTQ   + + +G  H+S GDLLR EI SG+E G   +  I  GK+VP 
Sbjct: 1   RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPD 60

Query: 83  EVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMER 139
           E+ IKLL++ +++      F++DGFPR  +   A + +    I+P+ V+  D  +E +  
Sbjct: 61  EIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIE 120

Query: 140 RILNR---------------------NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG 178
           RIL R                        R DDN ETI+KR +V+ E + P++ YY+ KG
Sbjct: 121 RILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKG 180

Query: 179 KVRKV 183
           K+ ++
Sbjct: 181 KLVEI 185

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily

 Score =  185 bits (472), Expect = 3e-60
 Identities = 82/170 (48%), Positives = 116/170 (68%), Gaps = 7/170 (4%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
            K  ++F++GGPGSGKGTQC  IVE +G+THLS GDLLRAE+ SGSE G  +Q +++ G 
Sbjct: 1   AKCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGD 60

Query: 79  IVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEE 135
           +VP +  + LL+ AM  +      FLIDG+PR  +    FE   +I  P  VL+FDCSE+
Sbjct: 61  LVPLDTVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEEFER--RIGPPTLVLYFDCSED 118

Query: 136 EMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
            M +R+L R +  GR DDN +TI+KR + + +++ PV+ YYE KGK+RK+
Sbjct: 119 TMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKI 168

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188

>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase

 Score =  185 bits (472), Expect = 4e-60
 Identities = 66/186 (35%), Positives = 100/186 (53%), Gaps = 32/186 (17%)

Query: 26  VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT 85
           +LG PG+GKGTQ   IV+ +G  HLS GDLLRAE+KSG+E G   +  + +G++VP EV 
Sbjct: 1   LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60

Query: 86  IKLLQKAME-ESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
           I L+++ +E     + FL+DGFPR      A E + +  I+ ++V+ FD  +E +  R+ 
Sbjct: 61  IGLVKERLEQNDCKNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVERLT 120

Query: 143 NRNQ-----------------------------GREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET++KR + + + + PV+ Y
Sbjct: 121 GRRIHPNSGRSYHLEFNPPKVPGKDDVTGEPLSQRSDDNEETVKKRLETYHKQTEPVIDY 180

Query: 174 YEAKGK 179
           Y+ KGK
Sbjct: 181 YKKKGK 186

Length = 186

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score =  155 bits (394), Expect = 5e-48
 Identities = 60/192 (31%), Positives = 102/192 (53%), Gaps = 32/192 (16%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +V  LG PGSGKGTQ   I E +G  H+S GDLLRAEIK+G+  G   +  +++G++VP 
Sbjct: 2   LVL-LGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPD 60

Query: 83  EVTIKLLQKAMEESG--NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140
           E+  +L+++ + ++    + F++DGFPR      A +A+ K + + V+  D  +EE+  R
Sbjct: 61  EIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVER 120

Query: 141 ILNRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVV 171
           +  R                                REDD  E ++KR +V+ E + P++
Sbjct: 121 LSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLI 180

Query: 172 QYYEAKGKVRKV 183
            YY+ +G + ++
Sbjct: 181 DYYKKRGILVQI 192

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed

 Score =  150 bits (382), Expect = 4e-46
 Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 33/190 (17%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I E +G  H+S GD+LRA +K+G+E G   ++ +  G++VP E+ I
Sbjct: 6   LGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            L+++ + +      FL+DGFPR      A + + K   I+ + V+  D  +EE+  R+ 
Sbjct: 66  GLVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLS 125

Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+RKR +V+ + + P++ Y
Sbjct: 126 GRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDY 185

Query: 174 YEAKGKVRKV 183
           Y+ KGK++K+
Sbjct: 186 YKKKGKLKKI 195

Length = 215

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score =  137 bits (348), Expect = 2e-41
 Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 9/169 (5%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + +LG PG+GK T    + +  G  HL  GD+LRA I   +E G  I+  I +G++VP E
Sbjct: 3   ILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDE 62

Query: 84  VTIKLLQKAMEES-GNDKFLIDGFPRN---EENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
           +   L+++ ++E+     F++DGFPR                +  + V+  D  EE +  
Sbjct: 63  IVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLE 122

Query: 140 RILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY----EAKGKVRKVI 184
           R+L R   REDDN ET++KR KV+ E + P+++YY    +  G++ +V+
Sbjct: 123 RLLGRR-VREDDNEETVKKRLKVYHEQTAPLIEYYSVTIDGSGEIEEVL 170

Length = 178

>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional

 Score =  121 bits (306), Expect = 5e-35
 Identities = 63/176 (35%), Positives = 101/176 (57%), Gaps = 11/176 (6%)

Query: 16  VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK 75
           +T  K  VV  LG PG+GKGTQ   + +  G   LS GD+LR  +  G+E G   + +++
Sbjct: 1   MTQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIME 60

Query: 76  EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF------VLF 129
            G +VP E+ + L++  +      + + DGFPR     A  EA+ ++  E       V+ 
Sbjct: 61  AGDLVPDELILALIRDELAGMEPVRVIFDGFPRTL---AQAEALDRLLEELGARLLAVVL 117

Query: 130 FDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
            +  +EE+ RRI+ R   +GR DDN ET+R+R +V+ E + P+V YYEA+G +++V
Sbjct: 118 LEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRV 173

Length = 191

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score =  118 bits (297), Expect = 1e-33
 Identities = 56/159 (35%), Positives = 93/159 (58%), Gaps = 8/159 (5%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + EH    H+S GD+LR  IK  +  G   Q  + +G++VP ++ +
Sbjct: 7   LGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVL 66

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAF--EAVTKI--EPEFVLFFDCSEEEMERRI 141
            L+Q+ +++      +++DGFPR    +AAF  E + +I    E V+  D  ++ +  R+
Sbjct: 67  DLVQERLQQPDAANGWILDGFPRK-VTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERL 125

Query: 142 LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
           L R  GR+DD  E IR+R +V+ E + P++ YY  + K+
Sbjct: 126 LAR--GRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKL 162

Length = 184

>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional

 Score =  113 bits (285), Expect = 5e-32
 Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 5/160 (3%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ A +    G  HLS GDLLR+E+ +GS  G   + ++  G++V   + +
Sbjct: 8   LGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVL 67

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILN 143
            +++  ++   +  +L+DGFPR      A E +    K   E V+  +  +  +  R+L 
Sbjct: 68  AIVESQLKALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLA 127

Query: 144 RNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           R  GR DDN   IR R +V+ E + P++ +Y  +G ++ V
Sbjct: 128 R--GRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSV 165

Length = 183

>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional

 Score =  105 bits (264), Expect = 7e-29
 Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 10/164 (6%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           G P +GKGTQ   +VE  G   LS GD+LRA I SGSE G  ++ ++  G++V  E+ I 
Sbjct: 7   GPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIA 66

Query: 88  LLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV-----TKIEPEFVLFFDCSEEEMERRI 141
           L+++ + E       + DGFPR      A + +      KI  + V+     +E +  RI
Sbjct: 67  LIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKI--DVVIRLKVDDEALIERI 124

Query: 142 LNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           + R   QGR DDN E    R   +   + P++ YY  +GK+ +V
Sbjct: 125 VKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEV 168

Length = 188

>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional

 Score =  105 bits (263), Expect = 2e-28
 Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 39/194 (20%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-----IKSGSENGTMIQNMIKEGK 78
           + +LG PG+GKGTQ +N+ E FG  H++ GD LRA          +E  T  + M   G+
Sbjct: 6   ILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYM-DAGE 64

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           +VP  V  +++++A+ ++  D F++DG+PRN E     E++T +  + VL+ D SEEE+ 
Sbjct: 65  LVPDAVVNEIVEEALSDA--DGFVLDGYPRNLEQAEYLESITDL--DVVLYLDVSEEELV 120

Query: 139 RRILNR--------------NQ---------------GREDDNVETIRKRFKVFLESSLP 169
            R+  R              NQ                R+DD  ET+R+R  VF E++ P
Sbjct: 121 DRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEP 180

Query: 170 VVQYYEAKGKVRKV 183
           V+++Y  +G + +V
Sbjct: 181 VIEHYRDQGVLVEV 194

Length = 215

>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional

 Score =  103 bits (258), Expect = 5e-28
 Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 6/166 (3%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           +  +G PG+GKGTQ   + E      +S GD+LR  +K+ +  G   +  +  G +VP  
Sbjct: 4   IIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDS 63

Query: 84  VTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMER 139
           V I +++  + E+   + FL+DGFPR  E   A +A+ K      +  +  +  + E+ +
Sbjct: 64  VVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLK 123

Query: 140 RILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           R+L R   +GR DDN  TI+ R   + + +LP++ +Y A+ K+ +V
Sbjct: 124 RLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQV 169

Length = 186

>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase

 Score = 97.2 bits (242), Expect = 6e-25
 Identities = 65/202 (32%), Positives = 89/202 (44%), Gaps = 50/202 (24%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           VF LG PG GKGT  + + +  G  H++ GDL+R EIKS    G  ++ ++ +GK+VP E
Sbjct: 33  VF-LGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDE 91

Query: 84  VTIKLLQK---AMEESGNDKFLIDGFPRNEENRAAFEAVTKIE-------PEFVLFFDCS 133
           +   LL K   A EE G   F++DGFPR        E VT I+        E VL   C 
Sbjct: 92  IIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKC- 150

Query: 134 EEEMERRIL-----NRN------------------------------QGREDDNVETIRK 158
              + RRI      N N                                R DD  E ++ 
Sbjct: 151 ---LGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKA 207

Query: 159 RFKVFLESSLPVVQYYEAKGKV 180
           R +V+ E S PV  +Y  +GK+
Sbjct: 208 RLRVYKEESQPVEDFYRKRGKL 229

Length = 261

>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase

 Score = 91.1 bits (226), Expect = 1e-21
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 28/175 (16%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           G P SGKGTQC  IV  FG  H+S GDLLRAE+ +G++ G   +  +  G++VP E+ I 
Sbjct: 4   GAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIA 63

Query: 88  LLQK--AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
           ++    + E++    +L+DG+PR+     + E + KI P+  +  D  +E +  R + R 
Sbjct: 64  MVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEKL-KIRPDIFILLDVPDEILIDRCVGRR 122

Query: 146 QG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYE 175
                                      R DD  E ++ R +++ +++  ++  Y 
Sbjct: 123 LDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAILSTYS 177

Length = 505

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score = 88.0 bits (218), Expect = 5e-21
 Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 12/170 (7%)

Query: 26  VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT 85
           +LG PG+GKGTQ   +V+ +G   LS GD+LRA + +G+  G   ++++  G +VP EV 
Sbjct: 5   LLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVV 64

Query: 86  IKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSE----EEM 137
           + ++   +E+    + F++DGFPR      A +A+ K   ++ + V+    +E      +
Sbjct: 65  VGIISDRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARV 124

Query: 138 ERRILN-RNQG---REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           E R+   R +G   R DD  E + KR   +   + P+V YY  K K+  V
Sbjct: 125 ETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTV 174

Length = 333

>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional

 Score = 74.9 bits (184), Expect = 7e-17
 Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 35/192 (18%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +VF LG PGSGKGT    +     Y H+S GDL R  I + +  G  I+ +++ G++VP 
Sbjct: 3   LVF-LGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPD 61

Query: 83  EVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEF-VLFFDCSEEEMERR 140
            +TIK+++  +     ND F++DGFPRN  N+A  +A+ K  P   ++ F   EE + +R
Sbjct: 62  SITIKIVEDKINTIKNNDNFILDGFPRN-INQA--KALDKFLPNIKIINFLIDEELLIKR 118

Query: 141 ILNRN-------------------------QG----REDDNVETIRKRFKVFLESSLPVV 171
           +  R                          +G    R+DD  E+++ R + +   + P++
Sbjct: 119 LSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLI 178

Query: 172 QYYEAKGKVRKV 183
           ++Y    ++  +
Sbjct: 179 EFYSKCNRLNNI 190

Length = 211

>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase

 Score = 74.5 bits (183), Expect = 1e-16
 Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 37/192 (19%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PGSGKGTQ   I + +   HL+ GD+LRA + + +  G   +  + +G++V  +
Sbjct: 34  LILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 93

Query: 84  VTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAV-----TKIEPEFVLFFDCSEEEM 137
           + + ++ +AM++    K F++DGFPR        + +      KI+   VL F   +  +
Sbjct: 94  LVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDK--VLNFAIDDAIL 151

Query: 138 ERRILNR----NQG-------------------------REDDNVETIRKRFKVFLESSL 168
           E RI  R    + G                         R+DD    ++ R + F + + 
Sbjct: 152 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 211

Query: 169 PVVQYYEAKGKV 180
           PV+ YY  KG V
Sbjct: 212 PVIDYYAKKGVV 223

Length = 244

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score = 71.4 bits (175), Expect = 2e-15
 Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 48/205 (23%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           +K P  + + G PG GKGT    + +     H++ G++LR EIK+ +  G  IQ ++  G
Sbjct: 3   LKGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSG 62

Query: 78  KIVPSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS- 133
            +VP  + I +++  + +  +D    F++DGFPRN +       +T I+    LF +   
Sbjct: 63  NLVPDNLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKITNID----LFVNIYL 118

Query: 134 ------EEEMERRILN---RN-------------------------------QGREDDNV 153
                 ++ + RRI N   RN                               Q R DD  
Sbjct: 119 PRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTE 178

Query: 154 ETIRKRFKVFLESSLPVVQYYEAKG 178
           E +  R   +  ++ P++Q+++ + 
Sbjct: 179 EIVAHRLNTYESTNSPIIQFFKNEN 203

Length = 229

>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional

 Score = 69.7 bits (171), Expect = 7e-15
 Identities = 40/132 (30%), Positives = 74/132 (56%), Gaps = 3/132 (2%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G  GSGKGTQ A + + +   H+ +G + R  I  G+E G   +  I  G +VP +
Sbjct: 3   ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDD 62

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRN-EENRAAFEAVTK--IEPEFVLFFDCSEEEMERR 140
           +TI ++ + +++ G + +L+DGFPRN  +    +EA+ K  ++ ++V+      E  + R
Sbjct: 63  ITIPMILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNR 122

Query: 141 ILNRNQGREDDN 152
           I+ R   + D+N
Sbjct: 123 IMGRRLCKNDNN 134

Length = 223

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 51.9 bits (124), Expect = 5e-09
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 12/126 (9%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           ++ + G PGSGK T    + E  G   +S  DLLR E  +  ++G +             
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGEL----------DDI 50

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           ++ ++LL++ ++E    +++IDG   +       EA   +     L        + +R L
Sbjct: 51  DIDLELLEEILDELAKQEWVIDGVRESTLELRLEEADLVV--FLDLPLPACRFRLLKRRL 108

Query: 143 NRNQGR 148
            R +G 
Sbjct: 109 QRGRGE 114

Length = 114

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 13/147 (8%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           ++ ++G PGSGK T    ++   G   LS+ D LR  ++ G     +       G++   
Sbjct: 1   LILMVGLPGSGKSTFARRLLRELGAVVLSS-DTLRKRLR-GDGPPDISYYARASGRVY-- 56

Query: 83  EVTIKLLQKAMEESGNDKFLID-GFPRNEENRAAFEAVTKIE--PEFVLFFDCSEEEMER 139
           +  ++L ++A+  +G    ++D      EE RA    + +    P  +++ +  EE +  
Sbjct: 57  QRLLELAREAL-RAGRP-VIVDATNLSREE-RARLIDLARRYGAPVRIVYLEAPEEVLRE 113

Query: 140 RILNRNQGREDD---NVETIRKRFKVF 163
           R   R +   D        + +    F
Sbjct: 114 RNAQRERSGGDPSDVPEAVLDRMLARF 140

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|222000 pfam13238, AAA_18, AAA domain

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 29/142 (20%), Positives = 46/142 (32%), Gaps = 18/142 (12%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G PGSGK T    + E  G        +LR   K       + + +  E K +  +
Sbjct: 1   ILITGTPGSGKTTLAKELAERLGD-------VLRDLAKENGLVLELDEEITDESKRLDED 53

Query: 84  VTIKLLQKAMEESGNDK----FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
              KLL K  +           +IDG     E     + V        +      EE+  
Sbjct: 54  KLAKLLDKLEKIIEELAEGENVIIDGHLAELELERFKDLV-------FVVLRADPEELLE 106

Query: 140 RILNRNQGREDDNVETIRKRFK 161
           R+  R    E  +     +  K
Sbjct: 107 RLKKRGYSEEKISENDEAEILK 128

Length = 128

>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

 Score = 41.3 bits (98), Expect = 5e-05
 Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 40/142 (28%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTM--IQNMIKEGKIVPSEV 84
           G  GSGK T    + +  G  +L  G +   E+ K  SE   +  ++  + E        
Sbjct: 6   GPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIPEVRKALDE-------- 57

Query: 85  TIKLLQKAMEESGNDKFLIDG-------FPRNEENRAAFEAVTKIEPEFVLFFDCSEEE- 136
                Q+ + +      +++G       FP         +A  KI      F   S E  
Sbjct: 58  ----RQRELAKKPG--IVLEGRDIGTVVFP---------DADLKI------FLTASPEVR 96

Query: 137 MERRILNRNQGREDDNVETIRK 158
            +RR        E  ++E I  
Sbjct: 97  AKRRAKQLQAKGEGVDLEEILA 118

Length = 147

>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 28 GGPGSGKGTQCANIVEHFGYTHLSAGDLLR 57
          G PGSGK T    + E  G  H+SAG++ R
Sbjct: 7  GPPGSGKTTVARLLAEKLGLKHVSAGEIFR 36

Length = 180

>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR 57
          V+ + G PGSGK T    + EH G   +SAG + R
Sbjct: 2  VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFR 36

Length = 179

>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR 57
          ++ + G PGSGK T    + E      +SAGD+ R
Sbjct: 2  IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFR 36

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	100.0
PLN02674	244	adenylate kinase	100.0
PRK14531	183	adenylate kinase; Provisional	100.0
PLN02459	261	probable adenylate kinase	100.0
PRK14527	191	adenylate kinase; Provisional	100.0
PRK14528	186	adenylate kinase; Provisional	100.0
PLN02200	234	adenylate kinase family protein	100.0
PRK13808	333	adenylate kinase; Provisional	100.0
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	100.0
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	100.0
PRK14532	188	adenylate kinase; Provisional	99.98
PRK14529	223	adenylate kinase; Provisional	99.98
PRK00279	215	adk adenylate kinase; Reviewed	99.97
PRK02496	184	adk adenylate kinase; Provisional	99.97
PTZ00088	229	adenylate kinase 1; Provisional	99.97
PRK14526	211	adenylate kinase; Provisional	99.97
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.97
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.96
PRK14530	215	adenylate kinase; Provisional	99.96
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.96
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.95
PLN02842	505	nucleotide kinase	99.95
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	99.91
PHA02530	300	pseT polynucleotide kinase; Provisional	99.79
PRK01184	184	hypothetical protein; Provisional	99.78
PRK13973	213	thymidylate kinase; Provisional	99.76
PRK06217	183	hypothetical protein; Validated	99.74
PRK06762	166	hypothetical protein; Provisional	99.74
PRK03839	180	putative kinase; Provisional	99.73
PRK08118	167	topology modulation protein; Reviewed	99.73
PRK13949	169	shikimate kinase; Provisional	99.73
PRK04040	188	adenylate kinase; Provisional	99.71
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.7
PLN02924	220	thymidylate kinase	99.7
PRK13975	196	thymidylate kinase; Provisional	99.7
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.7
PRK13974	212	thymidylate kinase; Provisional	99.69
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.69
PRK08233	182	hypothetical protein; Provisional	99.69
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.68
PRK08356	195	hypothetical protein; Provisional	99.68
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.67
PRK03731	171	aroL shikimate kinase II; Reviewed	99.66
PRK13948	182	shikimate kinase; Provisional	99.66
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.66
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.66
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.64
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.64
PRK13946	184	shikimate kinase; Provisional	99.63
PRK00698	205	tmk thymidylate kinase; Validated	99.63
PRK00625	173	shikimate kinase; Provisional	99.63
PRK04182	180	cytidylate kinase; Provisional	99.63
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.62
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.62
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.62
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.62
PRK07261	171	topology modulation protein; Provisional	99.62
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.61
PRK13947	171	shikimate kinase; Provisional	99.59
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.59
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.59
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.59
PRK00131	175	aroK shikimate kinase; Reviewed	99.59
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.58
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.58
PRK06547	172	hypothetical protein; Provisional	99.58
PRK07933	213	thymidylate kinase; Validated	99.58
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.58
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.58
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.56
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.56
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.56
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.56
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.55
PRK05057	172	aroK shikimate kinase I; Reviewed	99.55
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.54
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.54
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	99.54
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.54
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.54
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.53
PLN02422	232	dephospho-CoA kinase	99.53
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.52
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.52
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.5
PTZ00451	244	dephospho-CoA kinase; Provisional	99.49
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	99.49
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.49
PTZ00301	210	uridine kinase; Provisional	99.49
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.49
PRK09825	176	idnK D-gluconate kinase; Provisional	99.48
COG0645	170	Predicted kinase [General function prediction only	99.48
PRK14737	186	gmk guanylate kinase; Provisional	99.48
PRK14738	206	gmk guanylate kinase; Provisional	99.47
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.47
PRK05480	209	uridine/cytidine kinase; Provisional	99.47
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.46
PRK13976	209	thymidylate kinase; Provisional	99.46
PRK12338	319	hypothetical protein; Provisional	99.46
PLN02199	303	shikimate kinase	99.46
PRK06696	223	uridine kinase; Validated	99.44
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.44
COG4639	168	Predicted kinase [General function prediction only	99.44
PRK11545	163	gntK gluconate kinase 1; Provisional	99.43
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	99.42
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.42
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.42
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.42
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.42
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.41
PLN02348	395	phosphoribulokinase	99.41
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	99.39
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.39
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	99.39
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.39
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	99.38
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.38
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	99.37
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.37
PRK07667	193	uridine kinase; Provisional	99.36
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	99.35
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	99.35
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.35
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.35
PRK05541	176	adenylylsulfate kinase; Provisional	99.35
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.33
PRK04220	301	2-phosphoglycerate kinase; Provisional	99.31
PRK00300	205	gmk guanylate kinase; Provisional	99.31
PRK00023	225	cmk cytidylate kinase; Provisional	99.3
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.3
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.29
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.29
PRK07429	327	phosphoribulokinase; Provisional	99.29
PRK12337	475	2-phosphoglycerate kinase; Provisional	99.29
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	99.28
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	99.28
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.28
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	99.27
PRK15453	290	phosphoribulokinase; Provisional	99.26
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.25
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	99.24
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	99.24
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	99.24
PRK00889	175	adenylylsulfate kinase; Provisional	99.23
PHA03132	580	thymidine kinase; Provisional	99.21
PRK05439	311	pantothenate kinase; Provisional	99.21
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	99.2
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.19
COG3709	192	Uncharacterized component of phosphonate metabolis	99.19
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	99.18
PRK03846	198	adenylylsulfate kinase; Provisional	99.16
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	99.14
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	99.1
PLN02772	398	guanylate kinase	99.08
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	99.08
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.07
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	99.07
PLN02318	656	phosphoribulokinase/uridine kinase	99.07
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.07
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	99.06
KOG3308	225	consensus Uncharacterized protein of the uridine k	99.05
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	99.04
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.02
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	99.01
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.99
PHA00729	226	NTP-binding motif containing protein	98.91
KOG3062	281	consensus RNA polymerase II elongator associated p	98.81
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.8
PLN02165	334	adenylate isopentenyltransferase	98.79
PHA03136	378	thymidine kinase; Provisional	98.76
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	98.76
COG1660	286	Predicted P-loop-containing kinase [General functi	98.66
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	98.66
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.61
PRK06761	282	hypothetical protein; Provisional	98.54
PF13173	128	AAA_14: AAA domain	98.51
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	98.49
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	98.48
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	98.47
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	98.45
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	98.45
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.44
PF00004	132	AAA: ATPase family associated with various cellula	98.43
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	98.43
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.41
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	98.4
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.4
PHA03135	343	thymidine kinase; Provisional	98.38
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	98.36
PLN02840	421	tRNA dimethylallyltransferase	98.35
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.31
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	98.31
CHL00195	489	ycf46 Ycf46; Provisional	98.29
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	98.29
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.24
PRK08099	399	bifunctional DNA-binding transcriptional repressor	98.23
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	98.23
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.2
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	98.19
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	98.19
smart00382	148	AAA ATPases associated with a variety of cellular	98.18
PLN02748	468	tRNA dimethylallyltransferase	98.18
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.17
PRK09087	226	hypothetical protein; Validated	98.17
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	98.16
PHA03138	340	thymidine kinase; Provisional	98.15
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	98.15
PRK14974	336	cell division protein FtsY; Provisional	98.15
CHL00181	287	cbbX CbbX; Provisional	98.15
PHA03134	340	thymidine kinase; Provisional	98.14
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	98.14
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	98.13
PRK09169	2316	hypothetical protein; Validated	98.12
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.12
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	98.1
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	98.09
PLN02796	347	D-glycerate 3-kinase	98.08
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.07
TIGR00959	428	ffh signal recognition particle protein. This mode	98.06
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.05
PRK10867	433	signal recognition particle protein; Provisional	98.04
PRK06620	214	hypothetical protein; Validated	98.04
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.04
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	98.03
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	98.03
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.02
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.02
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.02
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.01
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.01
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	98.01
PLN03046	460	D-glycerate 3-kinase; Provisional	98.0
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.99
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.99
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.98
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.97
PRK12402	337	replication factor C small subunit 2; Reviewed	97.96
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.96
PRK12377	248	putative replication protein; Provisional	97.96
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.96
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.95
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.94
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.94
CHL00176	638	ftsH cell division protein; Validated	97.94
PF13245	76	AAA_19: Part of AAA domain	97.93
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	97.92
PHA03133	368	thymidine kinase; Provisional	97.92
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.92
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	97.91
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.91
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	97.91
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.91
TIGR01223	182	Pmev_kin_anim phosphomevalonate kinase, animal typ	97.9
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.9
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.9
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.89
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.89
PF05729	166	NACHT: NACHT domain	97.89
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.89
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.88
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.88
PF07726	131	AAA_3: ATPase family associated with various cellu	97.88
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.88
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	97.88
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.87
PF00693	281	Herpes_TK: Thymidine kinase from herpesvirus; Inte	97.87
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	97.87
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.86
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.84
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.84
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.83
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.83
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.83
COG4240	300	Predicted kinase [General function prediction only	97.82
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	97.82
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.82
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.82
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.82
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.81
PRK06893	229	DNA replication initiation factor; Validated	97.81
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	97.8
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.8
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.8
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.8
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	97.8
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.79
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.78
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	97.78
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.78
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.78
PRK04328	249	hypothetical protein; Provisional	97.77
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.77
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	97.77
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	97.77
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.76
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.76
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.76
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	97.76
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.75
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	97.74
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.74
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.74
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.73
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	97.73
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.73
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	97.73
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.73
PRK06067	234	flagellar accessory protein FlaH; Validated	97.73
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.72
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.72
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.72
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	97.72
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.72
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	97.71
COG3911	183	Predicted ATPase [General function prediction only	97.71
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.7
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.7
PRK04195	482	replication factor C large subunit; Provisional	97.7
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.69
PRK10416	318	signal recognition particle-docking protein FtsY;	97.69
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.69
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.68
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	97.68
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	97.68
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	97.68
PRK08084	235	DNA replication initiation factor; Provisional	97.67
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.67
PRK08116	268	hypothetical protein; Validated	97.67
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	97.67
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	97.67
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	97.66
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.66
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.66
PHA02244	383	ATPase-like protein	97.66
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.66
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.66
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	97.65
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.64
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	97.64
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.63
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.63
KOG1969	877	consensus DNA replication checkpoint protein CHL12	97.63
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.63
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.63
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.63
KOG4622	291	consensus Predicted nucleotide kinase [General fun	97.63
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.62
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	97.62
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	97.62
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.62
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	97.61
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.61
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.61
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	97.61
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.6
PRK13342	413	recombination factor protein RarA; Reviewed	97.6
PHA02624	647	large T antigen; Provisional	97.6
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.6
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.6
PRK15455	644	PrkA family serine protein kinase; Provisional	97.6
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.6
COG2326	270	Uncharacterized conserved protein [Function unknow	97.59
PRK10646	153	ADP-binding protein; Provisional	97.59
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.59
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.59
PRK13768	253	GTPase; Provisional	97.58
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.58
PRK13695	174	putative NTPase; Provisional	97.58
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.58
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	97.58
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.58
PRK06526	254	transposase; Provisional	97.58
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.58
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.58
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.57
cd03116	159	MobB Molybdenum is an essential trace element in t	97.57
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.57
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	97.57
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.57
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.56
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.56
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.56
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.56
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.55
PRK12422	445	chromosomal replication initiation protein; Provis	97.55
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.55
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	97.55
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.55
PRK04296	190	thymidine kinase; Provisional	97.55
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.55
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.55
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	97.54
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.54
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	97.54
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	97.54
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.54
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.54
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.54
PRK06835	329	DNA replication protein DnaC; Validated	97.54
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.54
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.54
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.54
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.53
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	97.53
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.53
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.53
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	97.53
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.53
COG1855	604	ATPase (PilT family) [General function prediction	97.53
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.53
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.52
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.52
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.52
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	97.52
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.52
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.52
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.52
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.51
PLN03025	319	replication factor C subunit; Provisional	97.51
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.51
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	97.51
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.51
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.51
KOG0736	953	consensus Peroxisome assembly factor 2 containing	97.51
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.51
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.5
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.5
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.5
cd03246	173	ABCC_Protease_Secretion This family represents the	97.5
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.5
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.5
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.5
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.49
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.49
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.49
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.49
PRK09183	259	transposase/IS protein; Provisional	97.49
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.49
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.49
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.48
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.48
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.48
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	97.48
CHL00206	2281	ycf2 Ycf2; Provisional	97.48
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.48
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.47
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.47
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.47
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.47
COG0802	149	Predicted ATPase or kinase [General function predi	97.47
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.47
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.47
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.47
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	97.46
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.46
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.46
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	97.46
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	97.46
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.46
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.46
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.46
PRK13851	344	type IV secretion system protein VirB11; Provision	97.46
PF01712	146	dNK: Deoxynucleoside kinase; InterPro: IPR002624 T	97.46
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.46
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.46
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.46
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.46
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	97.46
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.46
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	97.45
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	97.45
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.45
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.45
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.45
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.45
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	97.45
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	97.45
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.45
PRK10908	222	cell division protein FtsE; Provisional	97.44
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	97.44
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	97.44
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.44
PHA02544	316	44 clamp loader, small subunit; Provisional	97.44
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.44
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.44
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.44
cd03234	226	ABCG_White The White subfamily represents ABC tran	97.44
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.44
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.44
PRK08181	269	transposase; Validated	97.44
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	97.44
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	97.43
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	97.43
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.43
PRK06851	367	hypothetical protein; Provisional	97.43
KOG0234	438	consensus Fructose-6-phosphate 2-kinase/fructose-2	97.43
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	97.43
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	97.43
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.43
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.43

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.2e-34  Score=196.81  Aligned_cols=177  Identities=54%  Similarity=0.966  Sum_probs=163.6

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   95 (196)
                      ...++++|++.|+|||||-|+|.++++++++.|++++|++|+.... ++..+..+..++..|..+|..+..+++.+++.+
T Consensus         4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~   83 (195)
T KOG3079|consen    4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS   83 (195)
T ss_pred             cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence            3457899999999999999999999999999999999999999888 899999999999999999999999999999987


Q ss_pred             cCC-CeEEEeccCCCHHHHHHHHhhcCC-CCcEEEEEEcCHHHHHHHHhhccC--CCCCCcHHHHHHHHHHHHhcchhHH
Q 029252           96 SGN-DKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVV  171 (196)
Q Consensus        96 ~~~-~~~iidg~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~R~~~R~~--~r~~~~~~~~~~~~~~~~~~~~~~~  171 (196)
                      ... ++++|||||+..++...|.. ... .+++++|++|+++++.+|+..|..  .|.+++.+.+++|++.|.....|++
T Consensus        84 ~~~~~~fLIDGyPR~~~q~~~fe~-~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi  162 (195)
T KOG3079|consen   84 SGDSNGFLIDGYPRNVDQLVEFER-KIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVI  162 (195)
T ss_pred             cCCCCeEEecCCCCChHHHHHHHH-HhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHH
Confidence            664 55999999999999999998 444 689999999999999999999933  4999999999999999999999999


Q ss_pred             HHHHhcCcEEEEeCCCCceeEEe
Q 029252          172 QYYEAKGKVRKVIFCSPIFILVI  194 (196)
Q Consensus       172 ~~~~~~~~~~~id~~~~~e~v~~  194 (196)
                      ++|...+++..||++.+.++|+.
T Consensus       163 ~~~e~kg~l~~i~a~~~~d~Vf~  185 (195)
T KOG3079|consen  163 EYYEKKGKLLKINAERSVDDVFE  185 (195)
T ss_pred             HHHHccCcEEEecCCCCHHHHHH
Confidence            99999999999999999988763

>PLN02674 adenylate kinase

Probab=100.00  E-value=5.9e-33  Score=201.97  Aligned_cols=175  Identities=27%  Similarity=0.537  Sum_probs=159.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-C
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-N   98 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~   98 (196)
                      .++.|+|.|+|||||||+|+.|++++++.+++.+++++..+..+++.+..+..++..|..+|+++...++.+.+.+.+ .
T Consensus        30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~  109 (244)
T PLN02674         30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ  109 (244)
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcC
Confidence            357799999999999999999999999999999999999999999999999999999999999999999999997655 6


Q ss_pred             CeEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhc----cC-------------------------
Q 029252           99 DKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQ-------------------------  146 (196)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R----~~-------------------------  146 (196)
                      .+||+||||++..|+..|...   .+..++.+|+|++|.+++.+|+..|    .+                         
T Consensus       110 ~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~  189 (244)
T PLN02674        110 KGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI  189 (244)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCccc
Confidence            889999999999999987653   3567999999999999999999998    12                         


Q ss_pred             CCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEEe
Q 029252          147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVI  194 (196)
Q Consensus       147 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~  194 (196)
                      .|.+++++.+++|++.|+....+++++|...+.++.||+++++++|+.
T Consensus       190 ~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~  237 (244)
T PLN02674        190 QRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTA  237 (244)
T ss_pred             cCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHH
Confidence            278899999999999999999999999999889999999999988753

>PRK14531 adenylate kinase; Provisional

Probab=100.00  E-value=1.4e-32  Score=194.76  Aligned_cols=172  Identities=31%  Similarity=0.585  Sum_probs=155.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   99 (196)
                      +++.|+|.|+|||||||+++.|++++|+.+++++|++++.+..+++.+.....++..|..+++.+...++.+.+.+....
T Consensus         1 ~~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~   80 (183)
T PRK14531          1 MKQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSG   80 (183)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCC
Confidence            35679999999999999999999999999999999999998888888888888889999999999999888888754577


Q ss_pred             eEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252          100 KFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (196)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (196)
                      +||+||||++..+...+...   ....++.+++|++|++++.+|+..|  ++.+++++.+.+|+..|+....+++++|..
T Consensus        81 g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R--~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~  158 (183)
T PRK14531         81 GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLAR--GRADDNEAVIRNRLEVYREKTAPLIDHYRQ  158 (183)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999998877653   3456788999999999999999999  888899999999999999999999999998


Q ss_pred             cCcEEEEeCCCCceeEE
Q 029252          177 KGKVRKVIFCSPIFILV  193 (196)
Q Consensus       177 ~~~~~~id~~~~~e~v~  193 (196)
                      .+.++.||++.++++++
T Consensus       159 ~~~~~~id~~~~~~~v~  175 (183)
T PRK14531        159 RGLLQSVEAQGSIEAIT  175 (183)
T ss_pred             cCCEEEEECCCCHHHHH
Confidence            88899999999998765

>PLN02459 probable adenylate kinase

Probab=100.00  E-value=5.1e-32  Score=197.78  Aligned_cols=181  Identities=31%  Similarity=0.564  Sum_probs=161.9

Q ss_pred             hhhcccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHH
Q 029252           11 EADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ   90 (196)
Q Consensus        11 ~~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (196)
                      ..+......+++.|+|.|+|||||||+|+.|++.+++.+++.++++++.+..+++.+..+..++..|..+|+++...++.
T Consensus        19 ~~~~~~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~   98 (261)
T PLN02459         19 ACDRSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLS   98 (261)
T ss_pred             cccCCccccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHH
Confidence            34444444556779999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhc---CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc----C-----------------
Q 029252           91 KAMEES---GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN----Q-----------------  146 (196)
Q Consensus        91 ~~l~~~---~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~----~-----------------  146 (196)
                      +.+.+.   ...+||+||||++.+|...|.. . ..++.+|+|++|++++.+|+..|.    +                 
T Consensus        99 ~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~-~-~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~  176 (261)
T PLN02459         99 KRLEAGEEEGESGFILDGFPRTVRQAEILEG-V-TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGR  176 (261)
T ss_pred             HHHhcccccCCceEEEeCCCCCHHHHHHHHh-c-CCCCEEEEEECCHHHHHHHhhccccccccCcccccccccccccccc
Confidence            998753   3688999999999999999886 3 468999999999999999999981    0                 


Q ss_pred             -------------------CCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          147 -------------------GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       147 -------------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                                         .|.+++++.+.+|++.|..+..+++++|...+.++.||++.++++|+
T Consensus       177 ~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~  242 (261)
T PLN02459        177 PGIVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETW  242 (261)
T ss_pred             ccccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHH
Confidence                               47788999999999999999999999999999999999999998865

>PRK14527 adenylate kinase; Provisional

Probab=100.00  E-value=8.7e-32  Score=192.09  Aligned_cols=177  Identities=33%  Similarity=0.608  Sum_probs=158.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      ..++.+|+|.|+|||||||+|+.|++++++.+++.+++++.....+.+.+.....++..+...++++...++...+.+.+
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~   82 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME   82 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence            34678999999999999999999999999999999999999888788888888888899999999999999998887655


Q ss_pred             CCeEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHH
Q 029252           98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQ  172 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~  172 (196)
                      ..+||+||||.+..++..+..+   .+..++.+++|++|++++.+|+.+|  ..+|.+++.+.+.+|++.|+....++++
T Consensus        83 ~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~  162 (191)
T PRK14527         83 PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVD  162 (191)
T ss_pred             CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHH
Confidence            6789999999999988776643   4567888999999999999999999  4578888999999999999999999999


Q ss_pred             HHHhcCcEEEEeCCCCceeEEe
Q 029252          173 YYEAKGKVRKVIFCSPIFILVI  194 (196)
Q Consensus       173 ~~~~~~~~~~id~~~~~e~v~~  194 (196)
                      +|...+.++.||++.++++|+.
T Consensus       163 ~y~~~~~~~~id~~~~~~~v~~  184 (191)
T PRK14527        163 YYEARGHLKRVDGLGTPDEVYA  184 (191)
T ss_pred             HHHhcCCEEEEECCCCHHHHHH
Confidence            9998888999999999998753

>PRK14528 adenylate kinase; Provisional

Probab=100.00  E-value=1.7e-31  Score=189.42  Aligned_cols=172  Identities=29%  Similarity=0.573  Sum_probs=156.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~  100 (196)
                      +.|+|.|+|||||||+|+.|++++++.+++.+++++..+..+.+.+.....++..|..+++.+...++...+.+.+ .++
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g   81 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG   81 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence            3589999999999999999999999999999999999988888888888899999999999988888888887654 678


Q ss_pred             EEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHHHH
Q 029252          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (196)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (196)
                      ||+||+|++.++...+.++   ....++.+|+|++|++++.+|+..|  ..+|.+++++.+.+|+..|+....|++++|.
T Consensus        82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~  161 (186)
T PRK14528         82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYA  161 (186)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence            9999999999999887653   3467999999999999999999999  5688999999999999999999999999999


Q ss_pred             hcCcEEEEeCCCCceeEE
Q 029252          176 AKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       176 ~~~~~~~id~~~~~e~v~  193 (196)
                      ..+.++.||++.+.++|+
T Consensus       162 ~~~~~~~i~~~~~~~~v~  179 (186)
T PRK14528        162 AQKKLSQVNGVGSLEEVT  179 (186)
T ss_pred             hCCCEEEEECCCCHHHHH
Confidence            999999999999998765

>PLN02200 adenylate kinase family protein

Probab=100.00  E-value=2.2e-31  Score=194.51  Aligned_cols=177  Identities=64%  Similarity=1.018  Sum_probs=157.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      ...|.+|+|.|+|||||||+|+.|++++++.+++.++++++.+...++.+..+...+..|..+++++...++...+....
T Consensus        40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~  119 (234)
T PLN02200         40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD  119 (234)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence            33467899999999999999999999999999999999999888878788888888889999999988888888876555


Q ss_pred             CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhc
Q 029252           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (196)
                      .++||+||+|.+..+...+.+.....|+.+++|++|++++.+|+..|..+|.+++.+.+.+|++.|+....+++++|...
T Consensus       120 ~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~  199 (234)
T PLN02200        120 NNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKK  199 (234)
T ss_pred             CCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            67899999999999988887644457999999999999999999999556788889999999999999999999999887


Q ss_pred             CcEEEEeCCCCceeEEe
Q 029252          178 GKVRKVIFCSPIFILVI  194 (196)
Q Consensus       178 ~~~~~id~~~~~e~v~~  194 (196)
                      +.++.||+++++++|+.
T Consensus       200 ~~~~~IDa~~~~eeV~~  216 (234)
T PLN02200        200 GKLYTINAVGTVDEIFE  216 (234)
T ss_pred             CCEEEEECCCCHHHHHH
Confidence            78999999999988753

>PRK13808 adenylate kinase; Provisional

Probab=100.00  E-value=2.2e-31  Score=200.75  Aligned_cols=172  Identities=30%  Similarity=0.559  Sum_probs=155.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF  101 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~  101 (196)
                      .|+|.|+|||||||+|+.|++.+++.+++.+|+++..+..+++.+..+..++..|..++++++..++.+.+.+.+ ..+|
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~   81 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGF   81 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCE
Confidence            589999999999999999999999999999999999988888899999999999999999999999999887654 6789


Q ss_pred             EEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc--------CCCCCCcHHHHHHHHHHHHhcchhH
Q 029252          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN--------QGREDDNVETIRKRFKVFLESSLPV  170 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~--------~~r~~~~~~~~~~~~~~~~~~~~~~  170 (196)
                      ||||||++.+|...|..+   ....||++|+|++|++++++|+..|.        ..|.+++.+.+.+|+..|+....++
T Consensus        82 ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~PL  161 (333)
T PRK13808         82 ILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPL  161 (333)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHHH
Confidence            999999999999877653   45689999999999999999999871        1467888999999999999999999


Q ss_pred             HHHHHhcCcEEEEeCCCCceeEEe
Q 029252          171 VQYYEAKGKVRKVIFCSPIFILVI  194 (196)
Q Consensus       171 ~~~~~~~~~~~~id~~~~~e~v~~  194 (196)
                      +++|...+.++.||+++++++|+.
T Consensus       162 l~~Y~e~~~lv~IDa~~siEEV~e  185 (333)
T PRK13808        162 VHYYSEKRKLLTVDGMMTIDEVTR  185 (333)
T ss_pred             HHHhhccCcEEEEECCCCHHHHHH
Confidence            999988778999999999988753

>TIGR01351 adk adenylate kinases

Probab=100.00  E-value=5.5e-31  Score=190.56  Aligned_cols=170  Identities=35%  Similarity=0.646  Sum_probs=153.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--CCeE
Q 029252           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKF  101 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~  101 (196)
                      |+|.|+|||||||+|+.|++++++.+++++|++++.+...++.+..+..++..|..+++++...++...+.+..  .++|
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~   81 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF   81 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence            88999999999999999999999999999999999888888888889999999999999999999999987633  6789


Q ss_pred             EEeccCCCHHHHHHHHhhcCC-CCcEEEEEEcCHHHHHHHHhhcc-C----------------------------CCCCC
Q 029252          102 LIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRN-Q----------------------------GREDD  151 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~R~~~R~-~----------------------------~r~~~  151 (196)
                      |+||||++..+...+.+ ... .++.+|+|++|++++.+|+..|. +                            +|.++
T Consensus        82 ilDGfPrt~~Qa~~l~~-~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD  160 (210)
T TIGR01351        82 ILDGFPRTLSQAEALDA-LLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDD  160 (210)
T ss_pred             EEeCCCCCHHHHHHHHH-HhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCC
Confidence            99999999999998887 444 68999999999999999999982 0                            37788


Q ss_pred             cHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEEe
Q 029252          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVI  194 (196)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~  194 (196)
                      +++.+.+|++.|+.+..+++++|...+.++.||++.++++|+.
T Consensus       161 ~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~  203 (210)
T TIGR01351       161 TEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWK  203 (210)
T ss_pred             CHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHH
Confidence            8999999999999999999999999889999999999988753

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=100.00  E-value=7.7e-31  Score=186.23  Aligned_cols=171  Identities=64%  Similarity=1.058  Sum_probs=151.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  102 (196)
                      +|+|.|+|||||||+|+.|++++++.+++++|++++....+++.+..+..++..|..+++++...++...+....+++||
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v   80 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL   80 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence            48999999999999999999999999999999999998877778888888899999999999999998888755578899


Q ss_pred             EeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcC
Q 029252          103 IDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG  178 (196)
Q Consensus       103 idg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (196)
                      +||+|++..+...|..+  ....|+++|||++|++++.+|+..|  ..++.+++.+.+.+|+..|.....+++++|...+
T Consensus        81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~  160 (183)
T TIGR01359        81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKG  160 (183)
T ss_pred             EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999888877653  3457899999999999999999999  2366778889999999999999999999998877


Q ss_pred             cEEEEeCCCCceeEE
Q 029252          179 KVRKVIFCSPIFILV  193 (196)
Q Consensus       179 ~~~~id~~~~~e~v~  193 (196)
                      .++.||++.++++++
T Consensus       161 ~~~~Id~~~~~~~v~  175 (183)
T TIGR01359       161 KVKEINAEGSVEEVF  175 (183)
T ss_pred             CEEEEECCCCHHHHH
Confidence            899999999988764

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14532 adenylate kinase; Provisional

Probab=99.98  E-value=1.1e-30  Score=186.05  Aligned_cols=171  Identities=32%  Similarity=0.583  Sum_probs=153.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF  101 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~  101 (196)
                      .|+|.|+|||||||+|+.|++++++.+++.++++++....+++.+..+..++..|..+++++...++...+.... +.++
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~   81 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA   81 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence            589999999999999999999999999999999999888788888888888989999999999999988886544 7889


Q ss_pred             EEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (196)
                      |+||||++.+++..+.++   .+..|+.+|+|++|++++.+|+..|  ..+|+++..+.+.+|+..|..+..++++.|..
T Consensus        82 vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~  161 (188)
T PRK14532         82 IFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAG  161 (188)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999998877543   4567899999999999999999998  35788888899999999999999999999988


Q ss_pred             cCcEEEEeCCCCceeEE
Q 029252          177 KGKVRKVIFCSPIFILV  193 (196)
Q Consensus       177 ~~~~~~id~~~~~e~v~  193 (196)
                      .+.++.||++.++++++
T Consensus       162 ~~~~~~id~~~~~eev~  178 (188)
T PRK14532        162 QGKLTEVDGMGSIEAVA  178 (188)
T ss_pred             cCCEEEEECCCCHHHHH
Confidence            77899999999998765

>PRK14529 adenylate kinase; Provisional

Probab=99.98  E-value=1e-30  Score=188.26  Aligned_cols=171  Identities=27%  Similarity=0.526  Sum_probs=152.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  102 (196)
                      .|+|.|+|||||||+++.|++++++.+++.++++++.+..+++.+..+..++..|..+++++...++.+.+.+.+.++||
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~i   81 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWL   81 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEE
Confidence            58999999999999999999999999999999999998888899999999999999999999999999999876688999


Q ss_pred             EeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhc----cC---------------------------CC
Q 029252          103 IDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQ---------------------------GR  148 (196)
Q Consensus       103 idg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R----~~---------------------------~r  148 (196)
                      +||||++.+|+..|...   ....++.+|+|++|++++.+|+..|    .+                           .|
T Consensus        82 LDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R  161 (223)
T PRK14529         82 LDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTR  161 (223)
T ss_pred             EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccccC
Confidence            99999999999987653   4567999999999999999999998    10                           26


Q ss_pred             CCCc-HHHHHHHHHHHHhc---chhHHHHHHh-----cCcEEEEeCCCCceeEE
Q 029252          149 EDDN-VETIRKRFKVFLES---SLPVVQYYEA-----KGKVRKVIFCSPIFILV  193 (196)
Q Consensus       149 ~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~id~~~~~e~v~  193 (196)
                      .+++ ++.+++|++.|+..   ..+++++|.+     .+.++.||+++++++|+
T Consensus       162 ~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~  215 (223)
T PRK14529        162 ADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIK  215 (223)
T ss_pred             CCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHH
Confidence            7775 78999999999987   3467889985     66899999999998765

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.97  E-value=3.7e-30  Score=186.91  Aligned_cols=172  Identities=36%  Similarity=0.668  Sum_probs=154.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF  101 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~  101 (196)
                      .|+|.|+|||||||+|+.|++++++.+++++|++++....+++.+..+..++..|..+++++...++.+.+.+.+ ..+|
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g~   81 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNGF   81 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCCE
Confidence            589999999999999999999999999999999999888888888889999999999999999999999887654 4589


Q ss_pred             EEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc-----------------------------CCCC
Q 029252          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGRE  149 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-----------------------------~~r~  149 (196)
                      |+||||++.++...+.+.   ....++.+|+|++|.+++.+|+..|.                             .+|.
T Consensus        82 VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r~  161 (215)
T PRK00279         82 LLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRA  161 (215)
T ss_pred             EEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCCC
Confidence            999999999998887542   45578899999999999999999982                             1567


Q ss_pred             CCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEEe
Q 029252          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVI  194 (196)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~  194 (196)
                      +++++.+.+|+..|+.++.++.++|...+.++.||++.++++|++
T Consensus       162 dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~  206 (215)
T PRK00279        162 DDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFA  206 (215)
T ss_pred             CCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHH
Confidence            888999999999999999999999998888999999999998764

>PRK02496 adk adenylate kinase; Provisional

Probab=99.97  E-value=2e-29  Score=178.98  Aligned_cols=171  Identities=31%  Similarity=0.594  Sum_probs=152.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~  100 (196)
                      +.|+|.|+|||||||+|+.|++++++.+++.+++++..+..+.+.+......+..|..+++++...++.+.+.+.+ ..+
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g   81 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG   81 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence            4589999999999999999999999999999999999988888888888888999999999999999988886544 578


Q ss_pred             EEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhc
Q 029252          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (196)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (196)
                      ||+||||++..+...+...   ....++.+++|++|++++.+|+..|  ++.++.++.+.+|+..|..+..+++++|...
T Consensus        82 ~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R--~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~  159 (184)
T PRK02496         82 WILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLAR--GRKDDTEEVIRRRLEVYREQTAPLIDYYRDR  159 (184)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999887776553   2346899999999999999999999  7888888999999999999999999999887


Q ss_pred             CcEEEEeCCCCceeEEe
Q 029252          178 GKVRKVIFCSPIFILVI  194 (196)
Q Consensus       178 ~~~~~id~~~~~e~v~~  194 (196)
                      +.++.||+++++++|+.
T Consensus       160 ~~~~~Ida~~~~~~V~~  176 (184)
T PRK02496        160 QKLLTIDGNQSVEAVTT  176 (184)
T ss_pred             CCEEEEECCCCHHHHHH
Confidence            78999999999988753

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.97  E-value=2.9e-29  Score=182.21  Aligned_cols=173  Identities=23%  Similarity=0.461  Sum_probs=154.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh--c
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S   96 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~   96 (196)
                      ..|+.|+|.|+|||||||+|+.|++++++.+++.++++++.....++.+..+..++..|..+++++...++...+.+  .
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~   83 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTD   83 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcc
Confidence            45677999999999999999999999999999999999999888888999999999999999999999999998876  2


Q ss_pred             C-CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc------------------------------
Q 029252           97 G-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN------------------------------  145 (196)
Q Consensus        97 ~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~------------------------------  145 (196)
                      . ..+||+||||++..+...+.. . ..++++++|++|.+++.+|+..|.                              
T Consensus        84 ~~~~g~iLDGfPRt~~Qa~~l~~-~-~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c  161 (229)
T PTZ00088         84 DCFKGFILDGFPRNLKQCKELGK-I-TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADC  161 (229)
T ss_pred             ccCceEEEecCCCCHHHHHHHHh-c-CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCcc
Confidence            3 688999999999999988876 3 478999999999999999999871                              


Q ss_pred             ---------CCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCc-EEEE---eCCCCceeEE
Q 029252          146 ---------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK-VRKV---IFCSPIFILV  193 (196)
Q Consensus       146 ---------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i---d~~~~~e~v~  193 (196)
                               ..|.+++++.+.+|++.|+....+++++|...+. ++.+   |++.++++|+
T Consensus       162 ~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~  222 (229)
T PTZ00088        162 EGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFY  222 (229)
T ss_pred             cccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHH
Confidence                     0477888999999999999999999999999887 8777   7888887654

>PRK14526 adenylate kinase; Provisional

Probab=99.97  E-value=2.4e-29  Score=180.80  Aligned_cols=170  Identities=28%  Similarity=0.530  Sum_probs=151.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF  101 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~  101 (196)
                      .|+|.|+|||||||+++.|++.+++.+++.++++++....+++.+..+..++..|..+++++...++.+.+.... ..+|
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~   81 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF   81 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence            488999999999999999999999999999999999888888889999999999999999999999999987544 6789


Q ss_pred             EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc-----------------------------CCCCCCc
Q 029252          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDN  152 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~-----------------------------~~r~~~~  152 (196)
                      |+||||++.++...+.. .... ..++++++|++++.+|+..|.                             .+|.+++
T Consensus        82 ilDGfPR~~~Qa~~l~~-~~~~-~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~  159 (211)
T PRK14526         82 ILDGFPRNINQAKALDK-FLPN-IKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDK  159 (211)
T ss_pred             EEECCCCCHHHHHHHHH-hcCC-CEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCC
Confidence            99999999999998886 3222 357889999999999999981                             1488999


Q ss_pred             HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEEe
Q 029252          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVI  194 (196)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~  194 (196)
                      ++.+++|++.|+....+++++|...+.++.||++.++++|+.
T Consensus       160 ~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~  201 (211)
T PRK14526        160 EESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKK  201 (211)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHH
Confidence            999999999999999999999998889999999999988753

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.97  E-value=1.6e-28  Score=175.84  Aligned_cols=168  Identities=40%  Similarity=0.712  Sum_probs=150.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeEE
Q 029252           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFL  102 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~i  102 (196)
                      |+|.|+|||||||+|+.|++++++.+++.+++++.......+.+..+...+..+...+.++...++...+.... ..+||
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~v   81 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGFI   81 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCEE
Confidence            89999999999999999999999999999999999888777788888888888889999998999988887542 67899


Q ss_pred             EeccCCCHHHHHHHHhhcCC---CCcEEEEEEcCHHHHHHHHhhcc-C--------------------CCCCCcHHHHHH
Q 029252          103 IDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSEEEMERRILNRN-Q--------------------GREDDNVETIRK  158 (196)
Q Consensus       103 idg~~~~~~~~~~~~~~~~~---~~~~~i~l~~~~~~~~~R~~~R~-~--------------------~r~~~~~~~~~~  158 (196)
                      +||||.+..+...+.+ ...   .++++|+|++|++++.+|+..|. .                    .+.++..+.+++
T Consensus        82 ldg~Pr~~~q~~~l~~-~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i~~  160 (194)
T cd01428          82 LDGFPRTVDQAEALDE-LLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKK  160 (194)
T ss_pred             EeCCCCCHHHHHHHHH-HHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHHHH
Confidence            9999999999888887 333   78999999999999999999992 1                    377888899999


Q ss_pred             HHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          159 RFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      |+..|..+..+++++|...+.++.||++.++++|
T Consensus       161 R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v  194 (194)
T cd01428         161 RLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV  194 (194)
T ss_pred             HHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence            9999999999999999988899999999998875

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.96  E-value=1.6e-27  Score=169.84  Aligned_cols=172  Identities=47%  Similarity=0.865  Sum_probs=146.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--CC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GN   98 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~   98 (196)
                      ..+|+|.|+|||||||+|+.|++.+++.+++.+++++.......+.+..+...+..+...+.......+...+...  .+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTS   82 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcC
Confidence            4689999999999999999999999999999999999876666666677777778888888877777776665432  37


Q ss_pred             CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (196)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (196)
                      .+||+||+|....+...+.. ....|+.+|||++|++++.+|+..|  ..+|.++..+.+.+|+..|+.+..++++.|..
T Consensus        83 ~~~i~dg~~~~~~q~~~~~~-~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~  161 (188)
T TIGR01360        83 KGFLIDGYPREVKQGEEFER-RIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYET  161 (188)
T ss_pred             CeEEEeCCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHh
Confidence            88999999999888887776 5567899999999999999999998  25678888899999999999999899898987


Q ss_pred             cCcEEEEeCCCCceeEE
Q 029252          177 KGKVRKVIFCSPIFILV  193 (196)
Q Consensus       177 ~~~~~~id~~~~~e~v~  193 (196)
                      .+.++.||++.++++++
T Consensus       162 ~~~~~~id~~~~~~~v~  178 (188)
T TIGR01360       162 KGKLRKINAEGTVDDVF  178 (188)
T ss_pred             CCCEEEEECCCCHHHHH
Confidence            77899999999988764

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14530 adenylate kinase; Provisional

Probab=99.96  E-value=6.3e-28  Score=175.21  Aligned_cols=169  Identities=35%  Similarity=0.593  Sum_probs=142.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-----cCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-----SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   95 (196)
                      .+.|+|.|+|||||||+++.|++++++.+++.+++++....     ....++. ....+..|..+++++...++...+. 
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~-   80 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALS-   80 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHh-
Confidence            45799999999999999999999999999999999998752     2333333 4556778888999888888888775 


Q ss_pred             cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-c----------------------------C
Q 029252           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N----------------------------Q  146 (196)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~----------------------------~  146 (196)
                       ...+||+||||.+.++...+..  ...++.+|||++|.+++.+|+..| .                            .
T Consensus        81 -~~~~~IldG~pr~~~q~~~l~~--~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~  157 (215)
T PRK14530         81 -DADGFVLDGYPRNLEQAEYLES--ITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELI  157 (215)
T ss_pred             -cCCCEEEcCCCCCHHHHHHHHH--hcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCccc
Confidence             3568999999999998887765  235889999999999999999887 1                            1


Q ss_pred             CCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEEe
Q 029252          147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVI  194 (196)
Q Consensus       147 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~  194 (196)
                      .|.+++++.+++|+..|+.+..+++++|...+.++.||+++++++|+.
T Consensus       158 ~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~  205 (215)
T PRK14530        158 QRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWA  205 (215)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHH
Confidence            467788999999999999999999999998888999999999987753

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.96  E-value=1e-27  Score=165.07  Aligned_cols=146  Identities=44%  Similarity=0.850  Sum_probs=129.8

Q ss_pred             EEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCeEEEe
Q 029252           26 VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLID  104 (196)
Q Consensus        26 i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~iid  104 (196)
                      |.|+|||||||+|+.|++++++.+++.++++++.....++.+..+..++..|..+|+++...++...+... ..++||+|
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild   80 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD   80 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence            68999999999999999999999999999999999889999999999999999999999999999999866 48999999


Q ss_pred             ccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcC
Q 029252          105 GFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG  178 (196)
Q Consensus       105 g~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (196)
                      |||++.++...|.+.   ....|+.+|+|++|++++.+|+..       ++.+.+++|++.|+.+..+++++|...+
T Consensus        81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~-------d~~~~i~~Rl~~y~~~~~~i~~~y~~~g  150 (151)
T PF00406_consen   81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ-------DNEEVIKKRLEEYRENTEPILDYYKEQG  150 (151)
T ss_dssp             SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT-------GSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999887762   567789999999999999999885       5678999999999999999999998765

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.95  E-value=1.6e-26  Score=161.66  Aligned_cols=165  Identities=34%  Similarity=0.628  Sum_probs=149.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~  100 (196)
                      +.|+|.|+|||||||+|+.|+++++.+|++.+++++......++.+.....++..+..+++.+...++..++...+ ..+
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~   80 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG   80 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence            3689999999999999999999999999999999999999999999999999999999999999999999998765 237


Q ss_pred             EEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhccCC-CCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQG-REDDNVETIRKRFKVFLESSLPVVQYYEA  176 (196)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (196)
                      +|+||||++..+...+.+.   .+...+.++.++++.+.+..|+..|  . |.+++++.+.+|+..|+....+++.+|. 
T Consensus        81 ~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r--~~r~dd~~~~~~~R~~~y~~~~~pli~~y~-  157 (178)
T COG0563          81 FILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGR--RVREDDNEETVKKRLKVYHEQTAPLIEYYS-  157 (178)
T ss_pred             EEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCc--cccccCCHHHHHHHHHHHHhcccchhhhhe-
Confidence            9999999999999888764   3467899999999999999999998  4 8899999999999999999999999887 


Q ss_pred             cCcEEEEeCCCCceeEE
Q 029252          177 KGKVRKVIFCSPIFILV  193 (196)
Q Consensus       177 ~~~~~~id~~~~~e~v~  193 (196)
                          +.||+..++++++
T Consensus       158 ----~~id~~~~i~~v~  170 (178)
T COG0563         158 ----VTIDGSGEIEEVL  170 (178)
T ss_pred             ----eeccCCCCHHHHH
Confidence                7899998887764

>PLN02842 nucleotide kinase

Probab=99.95  E-value=4.1e-26  Score=180.02  Aligned_cols=166  Identities=30%  Similarity=0.613  Sum_probs=148.9

Q ss_pred             EEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--CCeEE
Q 029252           25 FVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKFL  102 (196)
Q Consensus        25 ~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i  102 (196)
                      +|.|+|||||||+|+.|+++++..+++.+++++..+..+++.+..+.+++..|..+++++...++.+++....  ..+||
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I   80 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL   80 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence            4799999999999999999999999999999999988899999999999999999999999999988886533  57799


Q ss_pred             EeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-c------------------------CCCCCCcHHHHH
Q 029252          103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N------------------------QGREDDNVETIR  157 (196)
Q Consensus       103 idg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~------------------------~~r~~~~~~~~~  157 (196)
                      +||||++..+...+.. ....|+++|+|++|++++.+|+..| .                        .+|.+++++.++
T Consensus        81 LDGfPRt~~Qa~~Le~-~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ik  159 (505)
T PLN02842         81 LDGYPRSFAQAQSLEK-LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVK  159 (505)
T ss_pred             EeCCCCcHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHH
Confidence            9999999999888877 6778999999999999999999887 1                        146788999999


Q ss_pred             HHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          158 KRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      +|++.|+.+..++++.|..  .++.||+++++++|+
T Consensus       160 kRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVf  193 (505)
T PLN02842        160 ARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVF  193 (505)
T ss_pred             HHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHH
Confidence            9999999999999999964  488999999998765

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=99.91  E-value=1.1e-22  Score=145.28  Aligned_cols=172  Identities=37%  Similarity=0.627  Sum_probs=154.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GN   98 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~   98 (196)
                      ++..+++.|+|||||+|+|..+++.++..+++++|++|+.+..+++.+.....++..|..+++++...++...+... ..
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~   93 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ   93 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence            46889999999999999999999999999999999999999999999999999999999999999988777777654 37


Q ss_pred             CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc----cC-------------------------CCC
Q 029252           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----NQ-------------------------GRE  149 (196)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R----~~-------------------------~r~  149 (196)
                      ++|++||+|++..+...+.+ ....++.++.|++|++.+.+|+..|    ..                         .|.
T Consensus        94 ~~~ildg~Prt~~qa~~l~~-~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~  172 (235)
T KOG3078|consen   94 KGFILDGFPRTVQQAEELLD-RIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQRE  172 (235)
T ss_pred             cccccCCCCcchHHHHHHHH-ccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCc
Confidence            89999999999998888777 8899999999999999999999998    11                         356


Q ss_pred             CCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      ++.++.+..|+..|++...+++++|...+.+..+++.. .++|+
T Consensus       173 dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~  215 (235)
T KOG3078|consen  173 DDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVF  215 (235)
T ss_pred             cccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhH
Confidence            78899999999999999999999999999888888877 55543

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.79  E-value=1.4e-18  Score=132.39  Aligned_cols=166  Identities=19%  Similarity=0.225  Sum_probs=110.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (196)
                      ++.+|++.|+|||||||+|+.|++++ +..+++.|++.... ......+..  .+...............+...+.  .+
T Consensus         1 m~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~--~g   75 (300)
T PHA02530          1 MMKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSL-FGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK--SG   75 (300)
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHh-cCCCccccc--ccChHHHHHHHHHHHHHHHHHHH--cC
Confidence            46789999999999999999999999 89999997754443 221111100  00000000001122333444443  36


Q ss_pred             CeEEEeccCCCHHHHHHHHhh-cCCCCc-EEEEEEcCHHHHHHHHhhccCCCCCCcHHHHH---HHHHHHHhcchhHHHH
Q 029252           99 DKFLIDGFPRNEENRAAFEAV-TKIEPE-FVLFFDCSEEEMERRILNRNQGREDDNVETIR---KRFKVFLESSLPVVQY  173 (196)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~-~~~~~~-~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~---~~~~~~~~~~~~~~~~  173 (196)
                      ..+|+|+++....+...+.++ ...... .+++|++|.+++.+|+.+|  +....+.+.+.   ++++.+.....|++..
T Consensus        76 ~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~  153 (300)
T PHA02530         76 KSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR--GERAVPEDVLRSMFKQMKEYRGLVWPVYTA  153 (300)
T ss_pred             CeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc--CcCCCCHHHHHHHHHHHHHhcCCCCceecc
Confidence            789999999888887776653 222222 3799999999999999999  55556666666   6777777777788777


Q ss_pred             HHhcCcEEEEeCCCCceeE
Q 029252          174 YEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       174 ~~~~~~~~~id~~~~~e~v  192 (196)
                      +....+.+.+|.+.++.+.
T Consensus       154 ~~~~~~~~~~D~dgtl~~~  172 (300)
T PHA02530        154 DPGLPKAVIFDIDGTLAKM  172 (300)
T ss_pred             CCCCCCEEEEECCCcCcCC
Confidence            6655578888888777653

>PRK01184 hypothetical protein; Provisional

Probab=99.78  E-value=4.9e-17  Score=115.43  Aligned_cols=159  Identities=25%  Similarity=0.350  Sum_probs=101.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CCc-----chHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSE-----NGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   95 (196)
                      ++|+|+|+|||||||+++ +++++++.+++.+|++++.... +.+     ++........  . +.......++...+..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~--~-~~~~~~~~~~~~~i~~   77 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK--E-LGMDAVAKRTVPKIRE   77 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH--H-HChHHHHHHHHHHHHh
Confidence            479999999999999987 7789999999999999988643 211     2222222221  1 1122333333344444


Q ss_pred             cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCC--CcHHHHHHHHHHHHhcchhHHHH
Q 029252           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED--DNVETIRKRFKVFLESSLPVVQY  173 (196)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~  173 (196)
                      ..+..+|+|++ ....+...+.+ ....+..+|++++|++++.+|+..|  ++.+  .+.+.+..+......  .+..+.
T Consensus        78 ~~~~~vvidg~-r~~~e~~~~~~-~~~~~~~~i~v~~~~~~~~~Rl~~R--~~~~d~~~~~~~~~r~~~q~~--~~~~~~  151 (184)
T PRK01184         78 KGDEVVVIDGV-RGDAEVEYFRK-EFPEDFILIAIHAPPEVRFERLKKR--GRSDDPKSWEELEERDERELS--WGIGEV  151 (184)
T ss_pred             cCCCcEEEeCC-CCHHHHHHHHH-hCCcccEEEEEECCHHHHHHHHHHc--CCCCChhhHHHHHHHHHHHhc--cCHHHH
Confidence            44688999998 67777777766 3334567999999999999999988  4432  245666666544321  112223


Q ss_pred             HHhcCcEEEEeCCCCceeE
Q 029252          174 YEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       174 ~~~~~~~~~id~~~~~e~v  192 (196)
                      + ...++ +|+++.+++++
T Consensus       152 ~-~~ad~-vI~N~~~~~~l  168 (184)
T PRK01184        152 I-ALADY-MIVNDSTLEEF  168 (184)
T ss_pred             H-HhcCE-EEeCCCCHHHH
Confidence            3 33334 55566666654

>PRK13973 thymidylate kinase; Provisional

Probab=99.76  E-value=1.5e-16  Score=115.36  Aligned_cols=164  Identities=21%  Similarity=0.300  Sum_probs=98.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh---CCcEecH--------HHHHHHHHHcC--CcchHHHHHHHHcCCCCCHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSA--------GDLLRAEIKSG--SENGTMIQNMIKEGKIVPSEVTI   86 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~--------~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   86 (196)
                      ++++|+|.|++||||||+++.|++++   |..++..        ++.+++.+..+  ...+.....++..+  ...+...
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~   79 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE   79 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence            36899999999999999999999999   6655543        55555544331  11222222222111  1112223


Q ss_pred             HHHHHHHHhcCCCeEEEeccCCC------------HHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccC----CC
Q 029252           87 KLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQ----GR  148 (196)
Q Consensus        87 ~~~~~~l~~~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~----~r  148 (196)
                      ..+...+.  .+..||.|+|..+            .++...+...  ....||+++||++|++++.+|+.+|..    ++
T Consensus        80 ~~i~~~l~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~  157 (213)
T PRK13973         80 EVIRPALA--RGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDR  157 (213)
T ss_pred             HHHHHHHH--CCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCc
Confidence            34455554  4778888975411            1233333321  336799999999999999999999821    12


Q ss_pred             CC-CcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          149 ED-DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       149 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      .+ ...+.++++.+.|..    +.+++  ...+.+||++.++++|.
T Consensus       158 ~e~~~~~~~~~~~~~y~~----l~~~~--~~~~~~Ida~~~~e~V~  197 (213)
T PRK13973        158 FEKEDLAFHEKRREAFLQ----IAAQE--PERCVVIDATASPEAVA  197 (213)
T ss_pred             hhhchHHHHHHHHHHHHH----HHHhC--CCcEEEEcCCCCHHHHH
Confidence            22 233444455555543    32322  23588999999998764

>PRK06217 hypothetical protein; Validated

Probab=99.74  E-value=1.5e-16  Score=112.82  Aligned_cols=103  Identities=19%  Similarity=0.277  Sum_probs=73.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (196)
                      +.|+|.|+|||||||+++.|+++++..+++.|++++..  .+.++.          ...+.+.....+...+.  .+..|
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~--~~~~~   67 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFT----------TKRPPEERLRLLLEDLR--PREGW   67 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCcc----------ccCCHHHHHHHHHHHHh--cCCCE
Confidence            45999999999999999999999999999999888643  111110          11233333444444443  35679


Q ss_pred             EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      |+||++...  ...    ....++.+|||++|.+++..|+..|
T Consensus        68 vi~G~~~~~--~~~----~~~~~d~~i~Ld~~~~~~~~Rl~~R  104 (183)
T PRK06217         68 VLSGSALGW--GDP----LEPLFDLVVFLTIPPELRLERLRLR  104 (183)
T ss_pred             EEEccHHHH--HHH----HHhhCCEEEEEECCHHHHHHHHHcC
Confidence            999987532  111    2234788999999999999999998

>PRK06762 hypothetical protein; Provisional

Probab=99.74  E-value=2.3e-16  Score=110.20  Aligned_cols=150  Identities=15%  Similarity=0.178  Sum_probs=89.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      ||++|+|.|+|||||||+|+.|++++  ++.+++.|.+..........           ................+.  .
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~--~   67 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDG-----------PGNLSIDLIEQLVRYGLG--H   67 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCC-----------CCCcCHHHHHHHHHHHHh--C
Confidence            57899999999999999999999998  45667765544333211000           011122233333333333  3


Q ss_pred             CCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCC-CCCcHHHHHHHHHHHHhcchhHHHHH
Q 029252           98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGR-EDDNVETIRKRFKVFLESSLPVVQYY  174 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (196)
                      +..+|+|+..........+..+  ....+..++||++|.+++.+|..+|  ++ ...+++.+..+++...    .+   +
T Consensus        68 g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R--~~~~~~~~~~l~~~~~~~~----~~---~  138 (166)
T PRK06762         68 CEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTR--PKSHEFGEDDMRRWWNPHD----TL---G  138 (166)
T ss_pred             CCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcc--cccccCCHHHHHHHHhhcC----Cc---C
Confidence            6789999865444333333332  3333567999999999999999999  33 2234566666544432    11   1


Q ss_pred             HhcCcEEEEeCCCCceeEE
Q 029252          175 EAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       175 ~~~~~~~~id~~~~~e~v~  193 (196)
                      .  ...+.++.+.++++++
T Consensus       139 ~--~~~~~~~~~~~~~~v~  155 (166)
T PRK06762        139 V--IGETIFTDNLSLKDIF  155 (166)
T ss_pred             C--CCeEEecCCCCHHHHH
Confidence            0  1245556666776654

>PRK03839 putative kinase; Provisional

Probab=99.73  E-value=1.6e-16  Score=112.43  Aligned_cols=140  Identities=20%  Similarity=0.323  Sum_probs=87.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCCeE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKF  101 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~  101 (196)
                      .|+|.|+|||||||+++.|++++++.+++.|+++++. ........       .+.     .....+...+.+ ..+..+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-~~~~~~~~-------~~~-----~~~~~l~~~~~~~~~~~~v   68 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-GIGEEKDD-------EME-----IDFDKLAYFIEEEFKEKNV   68 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-CCcccCCh-------hhh-----cCHHHHHHHHHHhccCCCE
Confidence            6999999999999999999999999999999988653 11111100       001     112223222222 125669


Q ss_pred             EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHH-HHHHhcchhHHHHHHhcCcE
Q 029252          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF-KVFLESSLPVVQYYEAKGKV  180 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  180 (196)
                      |+||+...           ...++.+|||+++++++.+|+..|  +..  . ..+.+.+ ..+..  ....+.|.....+
T Consensus        69 IidG~~~~-----------l~~~~~vi~L~~~~~~~~~Rl~~R--~~~--~-~~~~~~~~~~~~~--~~~~~~~~~r~~~  130 (180)
T PRK03839         69 VLDGHLSH-----------LLPVDYVIVLRAHPKIIKERLKER--GYS--K-KKILENVEAELVD--VCLCEALEEKEKV  130 (180)
T ss_pred             EEEecccc-----------ccCCCEEEEEECCHHHHHHHHHHc--CCC--H-HHHHHHHHHHHHH--HHHHHHHHhcCCE
Confidence            99996421           224788999999999999999988  321  1 1111111 11111  1123445556678


Q ss_pred             EEEeCC-CCceeEE
Q 029252          181 RKVIFC-SPIFILV  193 (196)
Q Consensus       181 ~~id~~-~~~e~v~  193 (196)
                      +.||++ .++++++
T Consensus       131 ~~Id~~~~s~eev~  144 (180)
T PRK03839        131 IEVDTTGKTPEEVV  144 (180)
T ss_pred             EEEECCCCCHHHHH
Confidence            999996 5877664

>PRK08118 topology modulation protein; Reviewed

Probab=99.73  E-value=2.1e-16  Score=110.18  Aligned_cols=141  Identities=17%  Similarity=0.245  Sum_probs=89.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (196)
                      +.|+|.|+|||||||+|+.|++.++..+++.|++++..   +             ....+.+....++...+.   ...|
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~---~-------------w~~~~~~~~~~~~~~~~~---~~~w   62 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP---N-------------WEGVPKEEQITVQNELVK---EDEW   62 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc---C-------------CcCCCHHHHHHHHHHHhc---CCCE
Confidence            36999999999999999999999999999998887642   0             012233333445554443   5679


Q ss_pred             EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--c-CCCCC-----CcHH----HHHHHHHHHHhcchh
Q 029252          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--N-QGRED-----DNVE----TIRKRFKVFLESSLP  169 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~-~~r~~-----~~~~----~~~~~~~~~~~~~~~  169 (196)
                      |+||.+...-. .     ....+|.+|||++|.++|..|+..|  . .+...     ...+    .+.+++..|....++
T Consensus        63 VidG~~~~~~~-~-----~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~~~~~~g~~e~~~~~~l~wi~~~~~~~r~  136 (167)
T PRK08118         63 IIDGNYGGTMD-I-----RLNAADTIIFLDIPRTICLYRAFKRRVQYRGKTRPDMGAGCEEKFDLQFFKWIWEYPKTKRP  136 (167)
T ss_pred             EEeCCcchHHH-H-----HHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCCCCCCCCCCCcccCCHHHHHHHHhCchhhhH
Confidence            99996542211 1     1224899999999999999999998  1 22211     1112    466666666665555


Q ss_pred             HH----HHHHhcCcEEEEeCCC
Q 029252          170 VV----QYYEAKGKVRKVIFCS  187 (196)
Q Consensus       170 ~~----~~~~~~~~~~~id~~~  187 (196)
                      ..    +.|....+++.+.+..
T Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~  158 (167)
T PRK08118        137 SILKRLNQLSEEKDIVILKSRN  158 (167)
T ss_pred             HHHHHHHhcCCCCeEEEECCHH
Confidence            32    2222222456665543

>PRK13949 shikimate kinase; Provisional

Probab=99.73  E-value=6.6e-16  Score=107.85  Aligned_cols=151  Identities=18%  Similarity=0.210  Sum_probs=89.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (196)
                      .|+|.|+|||||||+++.|++.+++.+++.|+++......      .+...+ ..|..........++.+ +..  ...+
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~------~~~~~~~~~g~~~fr~~e~~~l~~-l~~--~~~~   73 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK------TVGDIFAERGEAVFRELERNMLHE-VAE--FEDV   73 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc------cHHHHHHHhCHHHHHHHHHHHHHH-HHh--CCCE
Confidence            5999999999999999999999999999999887765322      122222 22222223333444444 221  2344


Q ss_pred             EE-ec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCc---HHHHHHHHHHHHhcchhHHHHHH
Q 029252          102 LI-DG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN---VETIRKRFKVFLESSLPVVQYYE  175 (196)
Q Consensus       102 ii-dg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~  175 (196)
                      |+ .|  .+...+....+.+     .+++|||++|.+++.+|+..+..+|+...   .+.+...+...+.   .....|.
T Consensus        74 vis~Ggg~~~~~~~~~~l~~-----~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~---~R~~~Y~  145 (169)
T PRK13949         74 VISTGGGAPCFFDNMELMNA-----SGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALE---KRAPFYR  145 (169)
T ss_pred             EEEcCCcccCCHHHHHHHHh-----CCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHH---HHHHHHH
Confidence            54 54  4455556666654     46799999999999999975422444321   2222222333332   3334565


Q ss_pred             hcCcEEEEeCCC-CceeE
Q 029252          176 AKGKVRKVIFCS-PIFIL  192 (196)
Q Consensus       176 ~~~~~~~id~~~-~~e~v  192 (196)
                      . .+ +.||.+. +.+++
T Consensus       146 ~-ad-~~id~~~~~~~e~  161 (169)
T PRK13949        146 Q-AK-IIFNADKLEDESQ  161 (169)
T ss_pred             h-CC-EEEECCCCCHHHH
Confidence            5 44 5667653 54443

>PRK04040 adenylate kinase; Provisional

Probab=99.71  E-value=2.7e-16  Score=111.48  Aligned_cols=137  Identities=18%  Similarity=0.289  Sum_probs=88.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCCc--chHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSE--NGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~--~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (196)
                      +++|+|+|+|||||||+++.|++++  ++.+++.+++++.......-  ........    ......-+..+....+.+.
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l----~~~~~~~~~~~a~~~i~~~   77 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKL----PPEEQKELQREAAERIAEM   77 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhC----ChhhhHHHHHHHHHHHHHh
Confidence            5789999999999999999999999  79999999998776544221  11222111    1111111222333333322


Q ss_pred             -CCCeEEEeccCCCHHH--------HHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHH
Q 029252           97 -GNDKFLIDGFPRNEEN--------RAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFL  164 (196)
Q Consensus        97 -~~~~~iidg~~~~~~~--------~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~~~~~~~~~~~  164 (196)
                       .+..+|+|++......        ...+   ....|+.+|++.+++++..+|+... .++|..++.+.+..+++...
T Consensus        78 ~~~~~~~~~~h~~i~~~~g~~~~~~~~~~---~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~  152 (188)
T PRK04040         78 AGEGPVIVDTHATIKTPAGYLPGLPEWVL---EELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNR  152 (188)
T ss_pred             hcCCCEEEeeeeeeccCCCCcCCCCHHHH---hhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHH
Confidence             2556899985432111        1111   3447899999999999999988852 23778788888888776544

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.70  E-value=3.2e-15  Score=100.34  Aligned_cols=111  Identities=23%  Similarity=0.358  Sum_probs=77.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (196)
                      ++|.|.|+|||||||+|+.||+++|+.+++.++++|.....-.-.-..+..+-.....+  +...+.-...+..  ...+
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~i--D~~iD~rq~e~a~--~~nv   76 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEI--DKEIDRRQKELAK--EGNV   76 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchh--hHHHHHHHHHHHH--cCCe
Confidence            47899999999999999999999999999999999998665222222333332222222  2223333333332  6678


Q ss_pred             EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      |++|.      ...|..  ...+++.|||.+|.++..+|+..|
T Consensus        77 Vlegr------LA~Wi~--k~~adlkI~L~Apl~vRa~Ria~R  111 (179)
T COG1102          77 VLEGR------LAGWIV--REYADLKIWLKAPLEVRAERIAKR  111 (179)
T ss_pred             EEhhh------hHHHHh--ccccceEEEEeCcHHHHHHHHHHh
Confidence            89874      233332  246789999999999999999999

>PLN02924 thymidylate kinase

Probab=99.70  E-value=1e-15  Score=110.96  Aligned_cols=160  Identities=20%  Similarity=0.278  Sum_probs=91.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHH-HH----------H
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE-VT----------I   86 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~   86 (196)
                      .+++++|+|+|++||||||+++.|++.++...+.. ..++.. ..++..++.+...+..+...... ..          .
T Consensus        13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~ep-~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~   90 (220)
T PLN02924         13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRFP-DRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKR   90 (220)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeCC-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999996432222 111111 11344555555555433222111 10          1


Q ss_pred             HHHHHHHHhcCCCeEEEeccCCCH-----------HHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHH
Q 029252           87 KLLQKAMEESGNDKFLIDGFPRNE-----------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET  155 (196)
Q Consensus        87 ~~~~~~l~~~~~~~~iidg~~~~~-----------~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~  155 (196)
                      ..+..++.  .+..||.|.|..+-           +....+.. ....||++|||++|++++.+|...+  +...+.. .
T Consensus        91 ~~I~pal~--~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~-~~~~PDlvi~Ld~~~~~a~~R~~~~--~~~~E~~-~  164 (220)
T PLN02924         91 SLMERKLK--SGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEV-GLPAPDLVLYLDISPEEAAERGGYG--GERYEKL-E  164 (220)
T ss_pred             HHHHHHHH--CCCEEEEccchhHHHHHHHhcCCCHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHhccC--ccccccH-H
Confidence            22333333  47889999865421           11122222 4567999999999999999996533  1112222 2


Q ss_pred             HHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          156 IRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      ..+++...+       ..+.. ..+.+||++.++++|.
T Consensus       165 ~~~rv~~~Y-------~~la~-~~~~vIDa~~sieeV~  194 (220)
T PLN02924        165 FQKKVAKRF-------QTLRD-SSWKIIDASQSIEEVE  194 (220)
T ss_pred             HHHHHHHHH-------HHHhh-cCEEEECCCCCHHHHH
Confidence            222222221       11222 3588899999988764

>PRK13975 thymidylate kinase; Provisional

Probab=99.70  E-value=2.3e-15  Score=107.89  Aligned_cols=156  Identities=18%  Similarity=0.229  Sum_probs=85.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH----------HH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT----------IK   87 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~   87 (196)
                      |+++|+|.|++||||||+++.|+++++...  ...+          ...++.+.+.+..+...+..+.          ..
T Consensus         1 m~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~----------~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~   70 (196)
T PRK13975          1 MNKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTD----------GKIGKLIREILSGSKCDKETLALLFAADRVEHVK   70 (196)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCC----------ChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence            357999999999999999999999998432  2211          1122233333322111110000          11


Q ss_pred             HHHHHHHhcCCCeEEEeccCCC-----------HHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCC-cHHH
Q 029252           88 LLQKAMEESGNDKFLIDGFPRN-----------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD-NVET  155 (196)
Q Consensus        88 ~~~~~l~~~~~~~~iidg~~~~-----------~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~-~~~~  155 (196)
                      .+...+.   ...+|+|++...           .+....+.. ....|+++|||++|++++.+|+..|  +++.. ..+.
T Consensus        71 ~i~~~~~---~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~-~~~~pd~vi~L~~~~e~~~~Rl~~r--~~~~~~~~~~  144 (196)
T PRK13975         71 EIEEDLK---KRDVVCDRYVYSSIAYQSVQGIDEDFIYSINR-YAKKPDLVFLLDVDIEEALKRMETR--DKEIFEKKEF  144 (196)
T ss_pred             HHHHHHc---CCEEEEECchhHHHHHhcccCCCHHHHHHHHh-CCCCCCEEEEEcCCHHHHHHHHhcc--CccccchHHH
Confidence            1222222   467889975422           111112222 3456899999999999999999988  43322 2233


Q ss_pred             HHHHHHHHHhcchhHHHHHHhcCcEEEEeCC-CCceeEE
Q 029252          156 IRKRFKVFLESSLPVVQYYEAKGKVRKVIFC-SPIFILV  193 (196)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~e~v~  193 (196)
                      ..+....|.... . ...|.....++.||++ .++++++
T Consensus       145 ~~~~~~~y~~~~-~-~~~~~~~~~~~~Id~~~~~~eev~  181 (196)
T PRK13975        145 LKKVQEKYLELA-N-NEKFMPKYGFIVIDTTNKSIEEVF  181 (196)
T ss_pred             HHHHHHHHHHHH-h-hcccCCcCCEEEEECCCCCHHHHH
Confidence            333333333211 1 1112223357899986 7877654

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.70  E-value=7.6e-16  Score=105.68  Aligned_cols=111  Identities=18%  Similarity=0.316  Sum_probs=78.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGND   99 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~   99 (196)
                      .+.|+|+|++||||||+.+.||+.++..+++.|.++.+...      ..+...+ ..|...+...-...+...+..  +.
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g------~sI~eIF~~~GE~~FR~~E~~vl~~l~~~--~~   73 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG------MSIAEIFEEEGEEGFRRLETEVLKELLEE--DN   73 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC------cCHHHHHHHHhHHHHHHHHHHHHHHHhhc--CC
Confidence            35699999999999999999999999999999999988732      3333333 234444445555566665542  23


Q ss_pred             eEEEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          100 KFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       100 ~~iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .||--|  .....+.+..+.. .+    .+|||++|.+++++|+...
T Consensus        74 ~ViaTGGG~v~~~enr~~l~~-~g----~vv~L~~~~e~l~~Rl~~~  115 (172)
T COG0703          74 AVIATGGGAVLSEENRNLLKK-RG----IVVYLDAPFETLYERLQRD  115 (172)
T ss_pred             eEEECCCccccCHHHHHHHHh-CC----eEEEEeCCHHHHHHHhccc
Confidence            444333  4455566666665 22    7999999999999999843

>PRK13974 thymidylate kinase; Provisional

Probab=99.69  E-value=4.3e-16  Score=112.85  Aligned_cols=164  Identities=21%  Similarity=0.278  Sum_probs=103.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHHHHHHHcCCcchHHHHHHHHcC--CCCCHHHHHH---------
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEIKSGSENGTMIQNMIKEG--KIVPSEVTIK---------   87 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------   87 (196)
                      +.+|+|.|++||||||+++.|++.+...-..  ..+......+.+.+.++.++.++...  ...++.....         
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~   82 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ   82 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence            5799999999999999999999988421100  00111111123456777777777422  2222222111         


Q ss_pred             ----HHHHHHHhcCCCeEEEecc----------CCCHH--HHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCC
Q 029252           88 ----LLQKAMEESGNDKFLIDGF----------PRNEE--NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRE  149 (196)
Q Consensus        88 ----~~~~~l~~~~~~~~iidg~----------~~~~~--~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~  149 (196)
                          .+...+.  .+..+|.|.|          +...+  ....+...  ....|+++|||++|++++.+|+..|    .
T Consensus        83 ~~~~~i~~~l~--~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R----~  156 (212)
T PRK13974         83 HVSKIIRPALE--NGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNR----K  156 (212)
T ss_pred             HHHHHHHHHHH--CCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc----c
Confidence                1222232  2556666654          33221  23333321  3457999999999999999999877    2


Q ss_pred             CCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      ++   .+.++...|+....+.+..|.+.+.+..||++.+++++.
T Consensus       157 dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~  197 (212)
T PRK13974        157 PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETIS  197 (212)
T ss_pred             cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHH
Confidence            22   244566677888888888898888899999999988764

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.69  E-value=5.5e-16  Score=105.60  Aligned_cols=113  Identities=20%  Similarity=0.367  Sum_probs=75.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcch---HHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG---TMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   99 (196)
                      +|+|.|+|||||||+++.|+++++..+++.|++.........+..   ......       ........+...+.  .+.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~--~g~   71 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEER-------AYQILNAAIRKALR--NGN   71 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHH-------HHHHHHHHHHHHHH--TT-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHH-------HHHHHHHHHHHHHH--cCC
Confidence            689999999999999999999999999999887776533211110   000000       01122344444454  477


Q ss_pred             eEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          100 KFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+|+|...........+.++  .......+|+|+++.+++.+|+..|
T Consensus        72 ~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R  118 (143)
T PF13671_consen   72 SVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQR  118 (143)
T ss_dssp             EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTT
T ss_pred             CceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhc
Confidence            79999877666666665554  2333456999999999999999999

...

>PRK08233 hypothetical protein; Provisional

Probab=99.69  E-value=3.9e-16  Score=110.54  Aligned_cols=160  Identities=16%  Similarity=0.136  Sum_probs=86.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCC---HHHHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP---SEVTIKLLQKAMEE   95 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~   95 (196)
                      ++.+|+|.|+|||||||+|+.|++.++ ..++..|+.....      .......+...+....   ...+...+...+..
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   75 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDN------CPEDICKWIDKGANYSEWVLTPLIKDIQELIAK   75 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEccc------CchhhhhhhhccCChhhhhhHHHHHHHHHHHcC
Confidence            458899999999999999999999996 3333332221110      0011222222222211   11222333333321


Q ss_pred             cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHH-
Q 029252           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY-  174 (196)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-  174 (196)
                      .....+|+|+ +....... +    ...+|.+|||++|.+++.+|+..|  ...+.+.+.+.+++..|.....+.+..+ 
T Consensus        76 ~~~~~vivd~-~~~~~~~~-~----~~~~d~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~~~~y~~~~  147 (182)
T PRK08233         76 SNVDYIIVDY-PFAYLNSE-M----RQFIDVTIFIDTPLDIAMARRILR--DFKEDTGNEIHNDLKHYLNYARPLYLEAL  147 (182)
T ss_pred             CCceEEEEee-ehhhccHH-H----HHHcCEEEEEcCCHHHHHHHHHHH--HhhhccccchhhHHHHHHHHHHHHHHHHh
Confidence            1124455665 32211111 1    124789999999999999998888  2212223345566666766555543222 


Q ss_pred             Hh--cCcEEEEeCCCCceeEE
Q 029252          175 EA--KGKVRKVIFCSPIFILV  193 (196)
Q Consensus       175 ~~--~~~~~~id~~~~~e~v~  193 (196)
                      ..  ....++||++.+.+++.
T Consensus       148 ~~~~~~~~~vId~~~~~e~i~  168 (182)
T PRK08233        148 HTVKPNADIVLDGALSVEEII  168 (182)
T ss_pred             hcCccCCeEEEcCCCCHHHHH
Confidence            11  12467799888877653

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.68  E-value=2.5e-15  Score=107.62  Aligned_cols=160  Identities=14%  Similarity=0.217  Sum_probs=84.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCC--CCCH------------H
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPS------------E   83 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------------~   83 (196)
                      +++|+|.|++||||||+++.|++.++.   .++....      +.+.+.++.+...+..+.  ....            .
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~   76 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE------PGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE   76 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999843   2221100      011222333333321111  1110            0


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeccCCCH------------HHHHHHHhhcCC--CCcEEEEEEcCHHHHHHHHhhccCCCC
Q 029252           84 VTIKLLQKAMEESGNDKFLIDGFPRNE------------ENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNRNQGRE  149 (196)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~iidg~~~~~------------~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~R~~~R~~~r~  149 (196)
                      .....+...+.  .+..+|+|.+....            +....+.. ...  .|+++|||++|++++++|+..|  ++.
T Consensus        77 ~~~~~i~~~l~--~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~-~~~~~~~d~~i~l~~~~~~~~~R~~~r--~~~  151 (195)
T TIGR00041        77 HLEDKIKPALA--EGKLVISDRYVFSSIAYQGGARGIDEDLVLELNE-DALGDMPDLTIYLDIDPEVALERLRKR--GEL  151 (195)
T ss_pred             HHHHHHHHHHh--CCCEEEECCcccHHHHHccccCCCCHHHHHHHHH-HhhCCCCCEEEEEeCCHHHHHHHHHhc--CCc
Confidence            11222333332  36778899643221            12222222 222  4899999999999999999988  332


Q ss_pred             CCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEEe
Q 029252          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILVI  194 (196)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~  194 (196)
                      +.  +... ....+........+.+.....+++||++.++++|..
T Consensus       152 ~~--~~~~-~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~  193 (195)
T TIGR00041       152 DR--EEFE-KLDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQ  193 (195)
T ss_pred             ch--HHHH-HHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHh
Confidence            11  1111 111111111112222222446899999999988753

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK08356 hypothetical protein; Provisional

Probab=99.68  E-value=9e-16  Score=109.86  Aligned_cols=115  Identities=21%  Similarity=0.296  Sum_probs=76.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC-cc----hHHH------HHHHHcCCCCC----HHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS-EN----GTMI------QNMIKEGKIVP----SEVTI   86 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~-~~----~~~~------~~~~~~~~~~~----~~~~~   86 (196)
                      ++|+|+|+|||||||+|+.|+ ++++.+++.++.++....... ..    ...+      ..++..+..++    .++..
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~   84 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILI   84 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHH
Confidence            679999999999999999996 589999998886544322211 00    0000      12222233222    13333


Q ss_pred             HHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        87 ~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .++...+.  ....+++||+ +..++...+.. .   ...+||+++|++++.+|+..|
T Consensus        85 ~~~~~~~~--~~~~ividG~-r~~~q~~~l~~-~---~~~vi~l~~~~~~~~~Rl~~R  135 (195)
T PRK08356         85 RLAVDKKR--NCKNIAIDGV-RSRGEVEAIKR-M---GGKVIYVEAKPEIRFERLRRR  135 (195)
T ss_pred             HHHHHHhc--cCCeEEEcCc-CCHHHHHHHHh-c---CCEEEEEECCHHHHHHHHHhc
Confidence            44444442  2346999999 88888888765 2   247999999999999999988

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.67  E-value=7.6e-15  Score=104.94  Aligned_cols=163  Identities=17%  Similarity=0.274  Sum_probs=93.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCc---EecHHHHHHHHHHcCCcchHHHHHHHHcC-CCCCHHHH--------HH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT---HLSAGDLLRAEIKSGSENGTMIQNMIKEG-KIVPSEVT--------IK   87 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~   87 (196)
                      ++++|++.|+.||||||+++.|++.+...   ++-.    +  .+.+++.++.++..+.++ ........        .+
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t----r--EP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~   75 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT----R--EPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQ   75 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE----e--CCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence            56899999999999999999999988432   2221    1  144566777777776654 22222111        11


Q ss_pred             HHHHHHHh--cCCCeEEEeccCCC------------HHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccC--CCC
Q 029252           88 LLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQ--GRE  149 (196)
Q Consensus        88 ~~~~~l~~--~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~--~r~  149 (196)
                      .+.+.+..  ..+..||.|.|..+            .+....+.+.  ....||+++||++|++++.+|+.+|..  .+.
T Consensus        76 h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~  155 (208)
T COG0125          76 HLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRF  155 (208)
T ss_pred             HHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchh
Confidence            12222211  13778899975322            1222222221  334799999999999999999999921  111


Q ss_pred             CCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      +.....+.++   .+..+..+.+.+.  ..+++||++.++++|.
T Consensus       156 E~~~~~f~~k---vr~~Y~~la~~~~--~r~~vIda~~~~e~v~  194 (208)
T COG0125         156 EKEDDEFLEK---VREGYLELAAKFP--ERIIVIDASRPLEEVH  194 (208)
T ss_pred             hhHHHHHHHH---HHHHHHHHHhhCC--CeEEEEECCCCHHHHH
Confidence            1111112222   2222223322221  1599999999988764

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.66  E-value=5.6e-15  Score=103.66  Aligned_cols=154  Identities=16%  Similarity=0.204  Sum_probs=84.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (196)
                      ..|+|.|++||||||+++.|++++++.+++.|.+......  ....    .++..   ..+..+...-...+.......+
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g--~~~~----~~~~~---~g~~~~~~~e~~~~~~~~~~~~   73 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN--MTVA----EIVER---EGWAGFRARESAALEAVTAPST   73 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC--CCHH----HHHHH---HCHHHHHHHHHHHHHHhcCCCe
Confidence            4688999999999999999999999999999888766531  1111    11111   0112222221222221122333


Q ss_pred             EEe-c--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252          102 LID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (196)
Q Consensus       102 iid-g--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (196)
                      |+. |  +.........+..     ..++|||++|++++.+|+..|  ...|+........+.+......   ..+.|..
T Consensus        74 vi~~ggg~vl~~~~~~~l~~-----~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~---r~~~y~~  145 (171)
T PRK03731         74 VIATGGGIILTEENRHFMRN-----NGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAE---REALYRE  145 (171)
T ss_pred             EEECCCCccCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHH---HHHHHHH
Confidence            444 3  2233333333333     557999999999999999877  1222211111111222222221   1223433


Q ss_pred             cCcEEEEeCCCCceeEE
Q 029252          177 KGKVRKVIFCSPIFILV  193 (196)
Q Consensus       177 ~~~~~~id~~~~~e~v~  193 (196)
                      .. .++||++.++++++
T Consensus       146 ~a-~~~Id~~~~~e~v~  161 (171)
T PRK03731        146 VA-HHIIDATQPPSQVV  161 (171)
T ss_pred             hC-CEEEcCCCCHHHHH
Confidence            22 36899998887654

>PRK13948 shikimate kinase; Provisional

Probab=99.66  E-value=3.1e-15  Score=105.23  Aligned_cols=112  Identities=15%  Similarity=0.106  Sum_probs=73.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGN   98 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~   98 (196)
                      ++..|+|.|++||||||+++.|+++++..+++.|.++.+....      .+...+ ..|.....+.....+...+.  ..
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~------si~~if~~~Ge~~fR~~E~~~l~~l~~--~~   80 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGK------SIPEIFRHLGEAYFRRCEAEVVRRLTR--LD   80 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhC------CHHHHHHHhCHHHHHHHHHHHHHHHHh--cC
Confidence            4578999999999999999999999999999999888776321      222222 22332333333444444433  23


Q ss_pred             CeEEEe--ccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           99 DKFLID--GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        99 ~~~iid--g~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ..+|.-  |.....+....+.+     ...+|||++|++++.+|+..+
T Consensus        81 ~~VIa~GgG~v~~~~n~~~l~~-----~g~vV~L~~~~e~l~~Rl~~~  123 (182)
T PRK13948         81 YAVISLGGGTFMHEENRRKLLS-----RGPVVVLWASPETIYERTRPG  123 (182)
T ss_pred             CeEEECCCcEEcCHHHHHHHHc-----CCeEEEEECCHHHHHHHhcCC
Confidence            334332  34445555555544     235899999999999999544

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.66  E-value=4.9e-15  Score=107.84  Aligned_cols=168  Identities=15%  Similarity=0.224  Sum_probs=85.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-HH-HcCCcchH------HHHHHHHcCC---CCCHH----HHH-
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-EI-KSGSENGT------MIQNMIKEGK---IVPSE----VTI-   86 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~-~~-~~~~~~~~------~~~~~~~~~~---~~~~~----~~~-   86 (196)
                      +|+|.|+.||||||+++.|+++++..++........ .. +.+...++      .++.++....   .....    +.. 
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~   80 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS   80 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence            489999999999999999999998644422100000 00 00111111      1222322111   11111    111 


Q ss_pred             --HHHHHHHHh--cCCCeEEEeccCCCH-H--------------HHHHHHhh------cCCCCcEEEEEEcCHHHHHHHH
Q 029252           87 --KLLQKAMEE--SGNDKFLIDGFPRNE-E--------------NRAAFEAV------TKIEPEFVLFFDCSEEEMERRI  141 (196)
Q Consensus        87 --~~~~~~l~~--~~~~~~iidg~~~~~-~--------------~~~~~~~~------~~~~~~~~i~l~~~~~~~~~R~  141 (196)
                        ..+.+.+..  ..++.+|+|++..+- .              ....+..+      ....||++|||++|++++.+|+
T Consensus        81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri  160 (219)
T cd02030          81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI  160 (219)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence              111111111  136788999863221 1              11111111      2367999999999999999999


Q ss_pred             hhccCCCCCCcHHHHHHHHHHHHhcchhHH-HHHHhcCcEEEEeCC--CCceeEE
Q 029252          142 LNRNQGREDDNVETIRKRFKVFLESSLPVV-QYYEAKGKVRKVIFC--SPIFILV  193 (196)
Q Consensus       142 ~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~id~~--~~~e~v~  193 (196)
                      ..|  ++..+. ..-...++..+..+.... ..|.....++.+|++  .++++++
T Consensus       161 ~~R--~~~~e~-~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~~~~~e~i~  212 (219)
T cd02030         161 KKR--GDPHEM-KVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVV  212 (219)
T ss_pred             HHc--CCchhh-cccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCChhhHHHHH
Confidence            998  443221 111112222222222222 224445579999988  7777654

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.66  E-value=6.9e-15  Score=102.41  Aligned_cols=149  Identities=15%  Similarity=0.193  Sum_probs=85.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH----HHcCCcch-HHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 029252           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (196)
                      |+|.|++||||||+++.|++.++..+++.|++....    ...+.... .....+.        ......+...+.  .+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~--~~   70 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWL--------QNLNDASTAAAA--KN   70 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHH--------HHHHHHHHHHHh--cC
Confidence            578999999999999999999999999988864221    11111110 0000000        011222222232  24


Q ss_pred             CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcC
Q 029252           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG  178 (196)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (196)
                      ..+|++...........+.. .. ....++||++|++++.+|+..|  +....+.+.+..++..+..   +.    ....
T Consensus        71 ~~~Vi~~t~~~~~~r~~~~~-~~-~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~~---~~----~~e~  139 (163)
T TIGR01313        71 KVGIITCSALKRHYRDILRE-AE-PNLHFIYLSGDKDVILERMKAR--KGHFMKADMLESQFAALEE---PL----ADET  139 (163)
T ss_pred             CCEEEEecccHHHHHHHHHh-cC-CCEEEEEEeCCHHHHHHHHHhc--cCCCCCHHHHHHHHHHhCC---CC----CCCC
Confidence            44466654444444444443 22 2334799999999999999999  3322334555555444321   11    1123


Q ss_pred             cEEEEeCCCCceeEE
Q 029252          179 KVRKVIFCSPIFILV  193 (196)
Q Consensus       179 ~~~~id~~~~~e~v~  193 (196)
                      .+++||++.+++++.
T Consensus       140 ~~~~id~~~~~~~~~  154 (163)
T TIGR01313       140 DVLRVDIDQPLEGVE  154 (163)
T ss_pred             ceEEEECCCCHHHHH
Confidence            589999999987653

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.64  E-value=4.2e-15  Score=106.23  Aligned_cols=153  Identities=18%  Similarity=0.174  Sum_probs=94.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCHH-------------
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE-------------   83 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-------------   83 (196)
                      .+|+|+|++||||||+++.|++ +|+.+++.|.+.+..+..+.+....+...+..+     ..+...             
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~   81 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR   81 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence            5799999999999999999988 999999999999998776555444444333211     112211             


Q ss_pred             -----HHH----HHHHHHHHhcC-CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252           84 -----VTI----KLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (196)
Q Consensus        84 -----~~~----~~~~~~l~~~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~  153 (196)
                           +..    ..+...+.... ...+++|. |...+.  .    ....+|.++++++|++++.+|+..|    ...+.
T Consensus        82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e~--~----~~~~~D~vi~V~a~~e~~~~Rl~~R----~~~s~  150 (194)
T PRK00081         82 KKLEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFEN--G----LEKLVDRVLVVDAPPETQLERLMAR----DGLSE  150 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhcC--C----chhhCCeEEEEECCHHHHHHHHHHc----CCCCH
Confidence                 112    22222232222 24566774 221111  1    1224789999999999999999988    33556


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      +.+..|+....    +..+ ..... -++|+++.+++++
T Consensus       151 e~~~~ri~~Q~----~~~~-~~~~a-d~vI~N~g~~e~l  183 (194)
T PRK00081        151 EEAEAIIASQM----PREE-KLARA-DDVIDNNGDLEEL  183 (194)
T ss_pred             HHHHHHHHHhC----CHHH-HHHhC-CEEEECCCCHHHH
Confidence            67777776543    2212 12222 3577877777654

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.64  E-value=9.5e-15  Score=104.30  Aligned_cols=154  Identities=18%  Similarity=0.156  Sum_probs=95.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH------cCCCCCHH------------
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK------EGKIVPSE------------   83 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~------------   83 (196)
                      ++|+|+|++||||||+++.|++.+|+.+++.|++.+..+..+.+....+...+.      .|..+...            
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            469999999999999999999988999999999999988776655544444332      12011111            


Q ss_pred             ----------HHHHHHHHHHHhcC-CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCc
Q 029252           84 ----------VTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (196)
Q Consensus        84 ----------~~~~~~~~~l~~~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~  152 (196)
                                .....+...+.... ...+++|- |...+.  .    ....+|.++++++|.+++.+|+.+|    ...+
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~-pll~E~--~----~~~~~D~ii~V~a~~e~r~~Rl~~R----~g~s  150 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVI-PLLFEA--K----LTDLCSEIWVVDCSPEQQLQRLIKR----DGLT  150 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe-HHhcCc--c----hHhCCCEEEEEECCHHHHHHHHHHc----CCCC
Confidence                      11222233333222 34555663 222111  1    1224789999999999999999988    2445


Q ss_pred             HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      .+....|+....    +. .......++ +|+++.+++++
T Consensus       151 ~e~~~~ri~~Q~----~~-~~k~~~aD~-vI~N~g~~e~l  184 (195)
T PRK14730        151 EEEAEARINAQW----PL-EEKVKLADV-VLDNSGDLEKL  184 (195)
T ss_pred             HHHHHHHHHhCC----CH-HHHHhhCCE-EEECCCCHHHH
Confidence            667777765422    22 112233344 67777777653

>PRK13946 shikimate kinase; Provisional

Probab=99.63  E-value=1.1e-14  Score=103.27  Aligned_cols=114  Identities=18%  Similarity=0.260  Sum_probs=73.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (196)
                      ..+..|+|.|++||||||+++.|++++++.+++.|.......  +......+..   .+...........+...+.  .+
T Consensus         8 ~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~--~~   80 (184)
T PRK13946          8 LGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLK--GG   80 (184)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHh--cC
Confidence            356789999999999999999999999999999988766553  2222222111   1111112222344444432  24


Q ss_pred             CeEEEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           99 DKFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        99 ~~~iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ..+|..|  .+...+....+..     ..++|||++|++++.+|+..|
T Consensus        81 ~~Vi~~ggg~~~~~~~r~~l~~-----~~~~v~L~a~~e~~~~Rl~~r  123 (184)
T PRK13946         81 PLVLATGGGAFMNEETRAAIAE-----KGISVWLKADLDVLWERVSRR  123 (184)
T ss_pred             CeEEECCCCCcCCHHHHHHHHc-----CCEEEEEECCHHHHHHHhcCC
Confidence            4555554  3344455554443     346899999999999999987

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.63  E-value=2.4e-14  Score=103.28  Aligned_cols=159  Identities=15%  Similarity=0.189  Sum_probs=85.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHc--CCCCCHHHH---------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKE--GKIVPSEVT---------   85 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------   85 (196)
                      ++++|+|.|++||||||+++.|++.++.   .++....      ..+...++.+...+..  ....+....         
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   75 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTRE------PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ   75 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeC------CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence            3579999999999999999999998732   1111100      1122233444444431  111111111         


Q ss_pred             --HHHHHHHHHhcCCCeEEEeccCCCH------------HHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCC
Q 029252           86 --IKLLQKAMEESGNDKFLIDGFPRNE------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRE  149 (196)
Q Consensus        86 --~~~~~~~l~~~~~~~~iidg~~~~~------------~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~  149 (196)
                        ...+...+.  .+..+|+|.+....            .....+...  ....||++|||++|++++.+|+.+|  +..
T Consensus        76 ~~~~~i~~~l~--~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R--~~~  151 (205)
T PRK00698         76 HLEEVIKPALA--RGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRAR--GEL  151 (205)
T ss_pred             HHHHHHHHHHH--CCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--CCc
Confidence              111222222  37789999643321            111122221  2366999999999999999999999  321


Q ss_pred             CCc---HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          150 DDN---VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       150 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      +..   ......++...+   ..+.+.  ....+++||++.+++++.
T Consensus       152 ~~~~~~~~~~~~~~~~~y---~~~~~~--~~~~~~~Id~~~~~e~v~  193 (205)
T PRK00698        152 DRIEQEGLDFFERVREGY---LELAEK--EPERIVVIDASQSLEEVH  193 (205)
T ss_pred             chhhhhhHHHHHHHHHHH---HHHHHh--CCCeEEEEeCCCCHHHHH
Confidence            111   112222332211   122221  123688999999988764

>PRK00625 shikimate kinase; Provisional

Probab=99.63  E-value=2.9e-14  Score=99.63  Aligned_cols=112  Identities=13%  Similarity=0.143  Sum_probs=69.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (196)
                      .|+|+|+|||||||+++.|++++++.+++.|+++.+.....-  .....+.+ ..|...........+.. +.  ....+
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~--~~~i~eif~~~Ge~~fr~~E~~~l~~-l~--~~~~V   76 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGAL--YSSPKEIYQAYGEEGFCREEFLALTS-LP--VIPSI   76 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCC--CCCHHHHHHHHCHHHHHHHHHHHHHH-hc--cCCeE
Confidence            599999999999999999999999999999999887643210  01122222 22222122222222322 22  13345


Q ss_pred             EEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       102 iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      |..|  .....+....+..     ...+|||++|.+++.+|+..|
T Consensus        77 Is~GGg~~~~~e~~~~l~~-----~~~Vv~L~~~~e~l~~Rl~~R  116 (173)
T PRK00625         77 VALGGGTLMIEPSYAHIRN-----RGLLVLLSLPIATIYQRLQKR  116 (173)
T ss_pred             EECCCCccCCHHHHHHHhc-----CCEEEEEECCHHHHHHHHhcC
Confidence            5444  3333333333322     246999999999999999988

>PRK04182 cytidylate kinase; Provisional

Probab=99.63  E-value=2.9e-14  Score=100.77  Aligned_cols=110  Identities=22%  Similarity=0.320  Sum_probs=70.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCC--HHHHHHHHHHHHHhcCCC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP--SEVTIKLLQKAMEESGND   99 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~   99 (196)
                      ++|+|.|++||||||+++.|++++++.+++.+++++............+...   +...+  .......+.....  .+.
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~   75 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKY---AEEDPEIDKEIDRRQLEIAE--KED   75 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHH---hhcCchHHHHHHHHHHHHHh--cCC
Confidence            4799999999999999999999999999999888887654322111122111   11111  1111222222221  345


Q ss_pred             eEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+|++|.....     +   ....++++|||++|++++.+|+..|
T Consensus        76 ~~Vi~g~~~~~-----~---~~~~~~~~V~l~a~~e~~~~Rl~~r  112 (180)
T PRK04182         76 NVVLEGRLAGW-----M---AKDYADLKIWLKAPLEVRAERIAER  112 (180)
T ss_pred             CEEEEEeecce-----E---ecCCCCEEEEEECCHHHHHHHHHhc
Confidence            67888742110     0   1112678999999999999999988

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.62  E-value=6.5e-14  Score=99.86  Aligned_cols=160  Identities=13%  Similarity=0.176  Sum_probs=93.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcch----HH-HHHHHHcCCCCCHHH----------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG----TM-IQNMIKEGKIVPSEV----------   84 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~----------   84 (196)
                      .+.+|+|.|+|||||||+|+.|+++++..++..+|++++.........    .. +..+-..+......+          
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~   81 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA   81 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence            467999999999999999999999999988899999998877632211    00 000000011111111          


Q ss_pred             ----HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEc-CHHHHHHHHhhc-cCCCCCCcHHHHHH
Q 029252           85 ----TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNR-NQGREDDNVETIRK  158 (196)
Q Consensus        85 ----~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~R-~~~r~~~~~~~~~~  158 (196)
                          +..++...+.  ++..+|+|+.+........... .  . ...+++.+ ++++..+|+..| .......+.+...+
T Consensus        82 v~~~L~~va~~~l~--~G~sVIvEgv~l~p~~~~~~~~-~--~-v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~  155 (197)
T PRK12339         82 IMPGINRVIRRALL--NGEDLVIESLYFHPPMIDENRT-N--N-IRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAE  155 (197)
T ss_pred             HHHHHHHHHHHHHH--cCCCEEEEecCcCHHHHHHHHh-c--C-eEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHH
Confidence                1233333444  5889999997777666543222 1  1 24555544 688888999999 22222333344444


Q ss_pred             HHHHHHhcchhHHHHHHhcCcEEEEeCC
Q 029252          159 RFKVFLESSLPVVQYYEAKGKVRKVIFC  186 (196)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~  186 (196)
                      .+...+....-+++.-++. .+-+|++.
T Consensus       156 ~~~~ir~i~~~l~~~a~~~-~i~~i~~~  182 (197)
T PRK12339        156 HLPEYRTIMDYSIADARGY-NIKVIDTD  182 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCCeecCc
Confidence            4555554444444443333 34455543

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.62  E-value=3.2e-14  Score=102.11  Aligned_cols=160  Identities=18%  Similarity=0.277  Sum_probs=83.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCC---CCCHHH-----------
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK---IVPSEV-----------   84 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------   84 (196)
                      ++|+|.|++||||||+++.|++.+   |..++....      ......++.+..++....   ..+...           
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   74 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH   74 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence            479999999999999999999988   443332211      001112233333332211   111100           


Q ss_pred             HHHHHHHHHHhcCCCeEEEeccCCCH------------HHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCC
Q 029252           85 TIKLLQKAMEESGNDKFLIDGFPRNE------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRED  150 (196)
Q Consensus        85 ~~~~~~~~l~~~~~~~~iidg~~~~~------------~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~  150 (196)
                      ....+...+.  .+..+|+|.++...            +....+...  ....|+++|||++|++++.+|+.+|  ++..
T Consensus        75 ~~~~~~~~~~--~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~  150 (200)
T cd01672          75 VEEVIKPALA--RGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEAR--GRDD  150 (200)
T ss_pred             HHHHHHHHHh--CCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--CCcc
Confidence            0111222222  47788999644221            122222221  3357899999999999999999998  3322


Q ss_pred             CcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          151 DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      .........++.....+..+...+  ...+++||++.+++++.
T Consensus       151 ~~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~id~~~~~e~i~  191 (200)
T cd01672         151 RDEQEGLEFHERVREGYLELAAQE--PERIIVIDASQPLEEVL  191 (200)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhC--CCeEEEEeCCCCHHHHH
Confidence            210111111111121122222222  23688999999887754

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.62  E-value=6.4e-14  Score=98.21  Aligned_cols=112  Identities=18%  Similarity=0.245  Sum_probs=71.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (196)
                      ++|+|.|++||||||+|+.|++++++.+++.+++++............+.........+ .......+.....  .+..+
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~--~~~~~   77 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEI-DKKIDRRIHEIAL--KEKNV   77 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHH-HHHHHHHHHHHHh--cCCCE
Confidence            47999999999999999999999999999998888776443221111111111111111 1111222222221  35678


Q ss_pred             EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      |++|.....     +   ....++++||+++|++++.+|+.+|
T Consensus        78 Vi~g~~~~~-----~---~~~~~d~~v~v~a~~~~r~~R~~~R  112 (171)
T TIGR02173        78 VLESRLAGW-----I---VREYADVKIWLKAPLEVRARRIAKR  112 (171)
T ss_pred             EEEecccce-----e---ecCCcCEEEEEECCHHHHHHHHHHc
Confidence            889854211     0   1223678999999999999999988

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.62  E-value=6.7e-15  Score=100.10  Aligned_cols=144  Identities=18%  Similarity=0.245  Sum_probs=86.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (196)
                      +.|+|+|.||+||||+|++|+ .+|+.+++..++..+. .........-     ....+..+.....+...+   .....
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~-~~~~~~de~r-----~s~~vD~d~~~~~le~~~---~~~~~   70 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN-GLYTEYDELR-----KSVIVDVDKLRKRLEELL---REGSG   70 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc-CCeeccCCcc-----ceEEeeHHHHHHHHHHHh---ccCCe
Confidence            479999999999999999998 9999999998887764 1111100000     001112233344444433   25678


Q ss_pred             EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHH--HHhcchhHHHHHHhcCc
Q 029252          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV--FLESSLPVVQYYEAKGK  179 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  179 (196)
                      |+|++...          ....+|++|+|.++++.+.+|+.+|  |-+   ++.+.+.++.  +--......+.+   ..
T Consensus        71 Ivd~H~~h----------l~~~~dlVvVLR~~p~~L~~RLk~R--Gy~---~eKI~ENveAEi~~vi~~EA~E~~---~~  132 (180)
T COG1936          71 IVDSHLSH----------LLPDCDLVVVLRADPEVLYERLKGR--GYS---EEKILENVEAEILDVILIEAVERF---EA  132 (180)
T ss_pred             Eeechhhh----------cCCCCCEEEEEcCCHHHHHHHHHHc--CCC---HHHHHHHHHHHHHHHHHHHHHHhc---Cc
Confidence            89975421          2224899999999999999999999  544   2333332211  111111222333   45


Q ss_pred             EEEEeCC-CCceeEE
Q 029252          180 VRKVIFC-SPIFILV  193 (196)
Q Consensus       180 ~~~id~~-~~~e~v~  193 (196)
                      ++.+|.+ .++++++
T Consensus       133 v~evdtt~~s~ee~~  147 (180)
T COG1936         133 VIEVDTTNRSPEEVA  147 (180)
T ss_pred             eEEEECCCCCHHHHH
Confidence            8888875 5666543

>PRK07261 topology modulation protein; Provisional

Probab=99.62  E-value=3.6e-15  Score=104.40  Aligned_cols=99  Identities=18%  Similarity=0.238  Sum_probs=71.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (196)
                      +.|+|.|+|||||||+|+.|++.++..+++.|++....   +  +           ...+.+.....+...+.   +..|
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~---~--~-----------~~~~~~~~~~~~~~~~~---~~~w   61 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP---N--W-----------QERDDDDMIADISNFLL---KHDW   61 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc---c--c-----------ccCCHHHHHHHHHHHHh---CCCE
Confidence            35899999999999999999999999999887754321   0  0           11223334555555554   3449


Q ss_pred             EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      |+||.+...-....+.     ..|.++||++|..+|..|+.+|
T Consensus        62 Iidg~~~~~~~~~~l~-----~ad~vI~Ld~p~~~~~~R~lkR   99 (171)
T PRK07261         62 IIDGNYSWCLYEERMQ-----EADQIIFLNFSRFNCLYRAFKR   99 (171)
T ss_pred             EEcCcchhhhHHHHHH-----HCCEEEEEcCCHHHHHHHHHHH
Confidence            9999876533333333     3789999999999999999998

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.61  E-value=6.1e-14  Score=96.33  Aligned_cols=130  Identities=15%  Similarity=0.173  Sum_probs=78.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH----HcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh--c
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S   96 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~   96 (196)
                      +|+|.|+|||||||+|+.|++.++..+++.|++.....    ..+.+....          ................  .
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~   70 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDE----------DRWPWLQALTDALLAKLAS   70 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCcc----------chhhHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999999877665311    111111100          0011111111111111  1


Q ss_pred             CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029252           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL  164 (196)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~  164 (196)
                      .+..+|+|...........+..+.......+|||++|.+++.+|+..|  .....+.+.+..+.+.++
T Consensus        71 ~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~  136 (150)
T cd02021          71 AGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR--KGHFMPADLLDSQFETLE  136 (150)
T ss_pred             CCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc--ccCCCCHHHHHHHHHHhc
Confidence            466788887555555555555522123446999999999999999999  222233455555554443

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK13947 shikimate kinase; Provisional

Probab=99.59  E-value=4.1e-14  Score=99.26  Aligned_cols=110  Identities=16%  Similarity=0.272  Sum_probs=67.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  102 (196)
                      .|+|.|+|||||||+++.|++++++.+++.|.++....  +....+.+.   ..+.....+.....+.. +.. ....+|
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g~~~~~~~~---~~ge~~~~~~e~~~~~~-l~~-~~~~vi   75 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--GMTVAEIFE---KDGEVRFRSEEKLLVKK-LAR-LKNLVI   75 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--CCcHHHHHH---HhChHHHHHHHHHHHHH-Hhh-cCCeEE
Confidence            48999999999999999999999999999988776652  111111111   11211111222223332 221 233343


Q ss_pred             Eec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          103 IDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       103 idg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      -.|  ..........+.+     ...+|||+++++.+.+|+..|
T Consensus        76 ~~g~g~vl~~~~~~~l~~-----~~~vv~L~~~~~~l~~Rl~~r  114 (171)
T PRK13947         76 ATGGGVVLNPENVVQLRK-----NGVVICLKARPEVILRRVGKK  114 (171)
T ss_pred             ECCCCCcCCHHHHHHHHh-----CCEEEEEECCHHHHHHHhcCC
Confidence            223  2344444444443     246999999999999999877

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.59  E-value=4.2e-14  Score=99.86  Aligned_cols=150  Identities=17%  Similarity=0.193  Sum_probs=91.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCC-----CCCH---------------
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-----IVPS---------------   82 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---------------   82 (196)
                      +|+|+|++||||||+++.|++ +|+.++++|++.++.+..+......+...+....     .+..               
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            489999999999999999988 8999999999999987766555444444432211     1111               


Q ss_pred             ---HHHHHHH----HHHHHhcCC-CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHH
Q 029252           83 ---EVTIKLL----QKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (196)
Q Consensus        83 ---~~~~~~~----~~~l~~~~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~  154 (196)
                         .+....+    .+.+..... ..+|+|. |...+..      ....+|.++++++|+++..+|+..|    ...+.+
T Consensus        80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~-plL~e~~------~~~~~D~vv~V~a~~~~ri~Rl~~R----d~~s~~  148 (179)
T cd02022          80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDI-PLLFETG------LEKLVDRVIVVDAPPEIQIERLMKR----DGLSEE  148 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCEEEEEe-hHhhcCC------cHHhCCeEEEEECCHHHHHHHHHHc----CCCCHH
Confidence               1112222    222222222 4566664 2222110      1124789999999999999999988    344567


Q ss_pred             HHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCce
Q 029252          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIF  190 (196)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e  190 (196)
                      .+..|+......     ..+....+ ++|+++.+.+
T Consensus       149 ~~~~r~~~Q~~~-----~~~~~~aD-~vI~N~~~~~  178 (179)
T cd02022         149 EAEARIASQMPL-----EEKRARAD-FVIDNSGSLE  178 (179)
T ss_pred             HHHHHHHhcCCH-----HHHHHhCC-EEEECcCCCC
Confidence            777776553221     11233333 4666666554

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.59  E-value=1.2e-13  Score=98.75  Aligned_cols=156  Identities=16%  Similarity=0.091  Sum_probs=92.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH-----cCCCCC------------
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-----EGKIVP------------   81 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------------   81 (196)
                      ..|..|.|+|++||||||+++.|++.+|+.+++.|.+.+..+.. ......+...++     .|. +.            
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~-idR~~L~~~vF~d~   81 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQ-INRAMLRAIITESK   81 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCC-cCHHHHHHHHhCCH
Confidence            45678999999999999999999999999999999988887654 222122221111     111 11            


Q ss_pred             ----------HHHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCC
Q 029252           82 ----------SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (196)
Q Consensus        82 ----------~~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~  151 (196)
                                +..+...+.+.+...+...+++|. |...+....    ....+|.++++.+|.++..+|+.+|    ...
T Consensus        82 ~~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei-pLL~E~~~~----~~~~~D~vi~V~a~~e~ri~Rl~~R----d~~  152 (204)
T PRK14733         82 EAKKWLEDYLHPVINKEIKKQVKESDTVMTIVDI-PLLGPYNFR----HYDYLKKVIVIKADLETRIRRLMER----DGK  152 (204)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe-chhhhccCc----hhhhCCEEEEEECCHHHHHHHHHHc----CCC
Confidence                      111122333333322234566663 322221000    0124788999999999999999988    344


Q ss_pred             cHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCC-Ccee
Q 029252          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCS-PIFI  191 (196)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~e~  191 (196)
                      +++....|+....    +..+ ....++ ++|+++. ++++
T Consensus       153 s~~~a~~ri~~Q~----~~ee-k~~~aD-~VI~N~g~~~~~  187 (204)
T PRK14733        153 NRQQAVAFINLQI----SDKE-REKIAD-FVIDNTELTDQE  187 (204)
T ss_pred             CHHHHHHHHHhCC----CHHH-HHHhCC-EEEECcCCCHHH
Confidence            5666676664433    2211 123333 3677776 6554

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.59  E-value=8e-14  Score=99.71  Aligned_cols=159  Identities=19%  Similarity=0.272  Sum_probs=78.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCH----HHHHH---HHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS----EVTIK---LLQKAMEE   95 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~l~~   95 (196)
                      +|+|.|++||||||+++.|++++++.++.-..      ......+..+...+........    .+...   .+.+....
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~------~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~   74 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPV------EPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH   74 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCccccccc------cccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence            48999999999999999999988764332110      0000001111111111000000    01111   11111110


Q ss_pred             -cCCCeEEEeccCCCHH---------------HHH----HHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252           96 -SGNDKFLIDGFPRNEE---------------NRA----AFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (196)
Q Consensus        96 -~~~~~~iidg~~~~~~---------------~~~----~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~  153 (196)
                       ..+..+|+|.++.+.-               ...    .+..+  ....|+++|||+++++++.+|+.+|  ++..+..
T Consensus        75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R--~r~~e~~  152 (193)
T cd01673          75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKR--GRPEEQG  152 (193)
T ss_pred             cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhc--CcHhhhc
Confidence             1378899998654311               011    11111  2467999999999999999999998  4432210


Q ss_pred             HHHHHHHHHHHhcchhHHHH-HHhcCcEEEEeCCC-Cce
Q 029252          154 ETIRKRFKVFLESSLPVVQY-YEAKGKVRKVIFCS-PIF  190 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~id~~~-~~e  190 (196)
                       ...+.++..+..+...... +....++++||++. +.+
T Consensus       153 -~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~~~~~~  190 (193)
T cd01673         153 -IPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDANEADIE  190 (193)
T ss_pred             -CCHHHHHHHHHHHHHHHhhccCCCCCEEEEECCccccc
Confidence             0011122222222222221 11234799999976 443

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.59  E-value=6.3e-14  Score=98.53  Aligned_cols=113  Identities=24%  Similarity=0.359  Sum_probs=69.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   99 (196)
                      +++.|+|.|+|||||||+++.|++++++.+++.|+++.....  ......+.   ..+...........+...+.  ...
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g--~~~~~~~~---~~g~~~~~~~~~~~~~~l~~--~~~   75 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG--KSIPEIFE---EEGEAAFRELEEEVLAELLA--RHN   75 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CCHHHHHH---HHCHHHHHHHHHHHHHHHHh--cCC
Confidence            457899999999999999999999999999999888766422  12211111   11111111222333333333  233


Q ss_pred             eEEEecc--CCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          100 KFLIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       100 ~~iidg~--~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+|..|.  .........+..     ...+|||++|.+.+.+|+..|
T Consensus        76 ~vi~~g~~~~~~~~~r~~l~~-----~~~~v~l~~~~~~~~~R~~~~  117 (175)
T PRK00131         76 LVISTGGGAVLREENRALLRE-----RGTVVYLDASFEELLRRLRRD  117 (175)
T ss_pred             CEEEeCCCEeecHHHHHHHHh-----CCEEEEEECCHHHHHHHhcCC
Confidence            4444442  122222333322     347999999999999999877

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.58  E-value=1.5e-14  Score=103.71  Aligned_cols=153  Identities=17%  Similarity=0.181  Sum_probs=94.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCH-----H-------------
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-----E-------------   83 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------------   83 (196)
                      .+|.|+|++||||||+++.|++ +|+.+++.|++.++.+..+.+....+...+..+...++     .             
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~   80 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT   80 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence            3699999999999999999986 79999999999999888776655555555433222110     0             


Q ss_pred             ---------HHHHHHHHHHHhc--CC-CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCC
Q 029252           84 ---------VTIKLLQKAMEES--GN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (196)
Q Consensus        84 ---------~~~~~~~~~l~~~--~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~  151 (196)
                               .....+...+...  .+ ..++++ .|...+.     . ....+|.+||+++|++++.+|+.+|    ...
T Consensus        81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e-~plL~e~-----g-~~~~~D~vi~V~a~~e~ri~Rl~~R----~g~  149 (200)
T PRK14734         81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYD-MPLLVEK-----G-LDRKMDLVVVVDVDVEERVRRLVEK----RGL  149 (200)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEE-eeceeEc-----C-ccccCCeEEEEECCHHHHHHHHHHc----CCC
Confidence                     1112222222111  12 334444 2221111     0 1225789999999999999999988    234


Q ss_pred             cHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      +.+....|+......    ... .... -++|+++.+++++
T Consensus       150 s~e~~~~ri~~Q~~~----~~k-~~~a-d~vI~N~g~~e~l  184 (200)
T PRK14734        150 DEDDARRRIAAQIPD----DVR-LKAA-DIVVDNNGTREQL  184 (200)
T ss_pred             CHHHHHHHHHhcCCH----HHH-HHhC-CEEEECcCCHHHH
Confidence            567777777665532    111 2223 3478888777654

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.58  E-value=4.7e-14  Score=100.30  Aligned_cols=154  Identities=18%  Similarity=0.239  Sum_probs=82.8

Q ss_pred             EEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHH------------HHHHHHH
Q 029252           26 VLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE------------VTIKLLQ   90 (196)
Q Consensus        26 i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~   90 (196)
                      |.|+.||||||+++.|++++.   ..++....      ..+.+.+..+.+++.........            .....+.
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~------~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~   74 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFP------PGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIR   74 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEEEEEES------STSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcccccCC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999884   22111000      11223333344443311211111            0122333


Q ss_pred             HHHHhcCCCeEEEeccCC------------CHHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHhhccCCC-CCCcHHHH
Q 029252           91 KAMEESGNDKFLIDGFPR------------NEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGR-EDDNVETI  156 (196)
Q Consensus        91 ~~l~~~~~~~~iidg~~~------------~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~r-~~~~~~~~  156 (196)
                      ..+.  .+..+|+|.|..            ..+....+... ....||++|||++|++++.+|+..|  +. .....+ -
T Consensus        75 ~~l~--~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r--~~~~~~~~~-~  149 (186)
T PF02223_consen   75 PALK--RGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKR--GEKDDEEEE-D  149 (186)
T ss_dssp             HHHH--TTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHT--SSTTTTTTH-H
T ss_pred             HHHc--CCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcC--CccchHHHH-H
Confidence            3343  478999996421            12222222221 2228999999999999999999999  33 112211 1


Q ss_pred             HHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          157 RKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      ...+...+..+..+.+   ....+++||++.++|+|.
T Consensus       150 ~~~~~~~~~~y~~l~~---~~~~~~iid~~~~~e~v~  183 (186)
T PF02223_consen  150 LEYLRRVREAYLELAK---DPNNWVIIDASRSIEEVH  183 (186)
T ss_dssp             HHHHHHHHHHHHHHHH---TTTTEEEEETTS-HHHHH
T ss_pred             HHHHHHHHHHHHHHHc---CCCCEEEEECCCCHHHHH
Confidence            2222233332223322   355799999999998764

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK06547 hypothetical protein; Provisional

Probab=99.58  E-value=5.6e-15  Score=103.20  Aligned_cols=126  Identities=16%  Similarity=0.201  Sum_probs=74.4

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHH-HHHcCCCCC--HHHHHHHHHHH
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQN-MIKEGKIVP--SEVTIKLLQKA   92 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~   92 (196)
                      .....+.+|+|.|+|||||||+++.|++.++..+++.|+++..... -....+.+.. .+..+....  .+.........
T Consensus        10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~   88 (172)
T PRK06547         10 LCGGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWRWDWANNRPGDW   88 (172)
T ss_pred             hhcCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceecCCCCCCCCCCc
Confidence            4456778999999999999999999999999999999887653211 0111111222 222222111  00000000000


Q ss_pred             HHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        93 l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ........+|++|..........+.  ......+.|||++|.+++.+|+..|
T Consensus        89 ~~l~~~~vVIvEG~~al~~~~r~~~--d~~g~v~~I~ld~~~~vr~~R~~~R  138 (172)
T PRK06547         89 VSVEPGRRLIIEGVGSLTAANVALA--SLLGEVLTVWLDGPEALRKERALAR  138 (172)
T ss_pred             EEeCCCCeEEEEehhhccHHHHHHh--ccCCCEEEEEEECCHHHHHHHHHhc
Confidence            1111356788999654333222221  1223347999999999999999999

>PRK07933 thymidylate kinase; Validated

Probab=99.58  E-value=3.3e-14  Score=102.92  Aligned_cols=164  Identities=13%  Similarity=0.068  Sum_probs=83.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCC---cEec----------HHHHHHHHHHcCC-c--chHHHHHHHHcCCCCCHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGY---THLS----------AGDLLRAEIKSGS-E--NGTMIQNMIKEGKIVPSEVT   85 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~----------~~d~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~   85 (196)
                      ++|+|.|+.||||||+++.|++.+..   .+..          .++.++..+.... .  ........+-.....  . .
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~--~-~   77 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRA--G-A   77 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhh--h-h
Confidence            47999999999999999999998842   2221          1233333332210 0  000001111000000  0 0


Q ss_pred             HHHHHHHHHhcCCCeEEEeccCCCHH--------------HHHHHHhh-----cCCCCcEEEEEEcCHHHHHHHHhhccC
Q 029252           86 IKLLQKAMEESGNDKFLIDGFPRNEE--------------NRAAFEAV-----TKIEPEFVLFFDCSEEEMERRILNRNQ  146 (196)
Q Consensus        86 ~~~~~~~l~~~~~~~~iidg~~~~~~--------------~~~~~~~~-----~~~~~~~~i~l~~~~~~~~~R~~~R~~  146 (196)
                      ...+..++.  .+..+|.|+|..+--              ....+..+     ....||++|||++|++++.+|+.+|  
T Consensus        78 ~~~I~p~l~--~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R--  153 (213)
T PRK07933         78 RDELAGLLA--AHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRR--  153 (213)
T ss_pred             HHHHHHHHh--CCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhh--
Confidence            122333333  477889997543210              11111111     2246999999999999999999988  


Q ss_pred             CCCC-----CcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          147 GRED-----DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       147 ~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      ++..     +..+.-...++..+..+..+.+.+ ....+++||++.++++|.
T Consensus       154 ~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~-~~~~~~~ida~~~~e~v~  204 (213)
T PRK07933        154 AAQDADRARDAYERDDGLQQRTGAVYAELAAQG-WGGPWLVVDPDVDPAALA  204 (213)
T ss_pred             ccccCCcccccccccHHHHHHHHHHHHHHHHhc-CCCCeEEeCCCCCHHHHH
Confidence            3210     101110111111222122222211 123688999999988764

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.58  E-value=4.1e-14  Score=97.63  Aligned_cols=148  Identities=17%  Similarity=0.202  Sum_probs=97.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCc--------chHHHHHHHHcCCCCCHHHH------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSE--------NGTMIQNMIKEGKIVPSEVT------   85 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~------   85 (196)
                      ++.+++|.||||+||||+++.|.++. -..++.+...|.. +.++.        ..+.+..++..+.++.+..+      
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~p-R~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG   80 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKP-RPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG   80 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCC-CCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence            57899999999999999999999988 5566665666654 22222        23677778887777655322      


Q ss_pred             --HHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcC-HHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252           86 --IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKV  162 (196)
Q Consensus        86 --~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~r~~~~~~~~~~~~~~  162 (196)
                        ...++..+.  .+..+|+|   -..+....+.. ..+ ..+.||+.+| .+++.+|+..|    ..++.+.+..||..
T Consensus        81 T~~~~ve~~~~--~G~~vild---Id~qGa~qvk~-~~p-~~v~IFi~pPs~eeL~~RL~~R----gtds~e~I~~Rl~~  149 (191)
T COG0194          81 TSREPVEQALA--EGKDVILD---IDVQGALQVKK-KMP-NAVSIFILPPSLEELERRLKGR----GTDSEEVIARRLEN  149 (191)
T ss_pred             CcHHHHHHHHh--cCCeEEEE---EehHHHHHHHH-hCC-CeEEEEEcCCCHHHHHHHHHcc----CCCCHHHHHHHHHH
Confidence              455666665  47778877   22233343443 333 3446666555 58888888855    77888999999988


Q ss_pred             HHhcchhHHHHHHhcCcEEEEeC
Q 029252          163 FLESSLPVVQYYEAKGKVRKVIF  185 (196)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~id~  185 (196)
                      ........    . ..+.+++|-
T Consensus       150 a~~Ei~~~----~-~fdyvivNd  167 (191)
T COG0194         150 AKKEISHA----D-EFDYVIVND  167 (191)
T ss_pred             HHHHHHHH----H-hCCEEEECc
Confidence            87644332    2 234555553

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.58  E-value=1.5e-14  Score=98.95  Aligned_cols=144  Identities=15%  Similarity=0.158  Sum_probs=81.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  102 (196)
                      +|+|.|+|||||||+|+.|+++++.++++.+.+....+..      .......  ...-.......+.. +.  ....||
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~------~~~~~~~--~~~i~~~l~~~~~~-~~--~~~~~V   69 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK------LASEVAA--IPEVRKALDERQRE-LA--KKPGIV   69 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHH------HHHHhcc--cHhHHHHHHHHHHH-Hh--hCCCEE
Confidence            4899999999999999999999999999987433322111      0000000  00001111222222 21  255699


Q ss_pred             EeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHh-cchhHHHHHHhcCcE
Q 029252          103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLE-SSLPVVQYYEAKGKV  180 (196)
Q Consensus       103 idg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  180 (196)
                      +||......        .....+++|||++|++.+.+|+.+| ..++...+.+...+++..... ........|.....-
T Consensus        70 idg~~~~~~--------~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d  141 (147)
T cd02020          70 LEGRDIGTV--------VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDA  141 (147)
T ss_pred             EEeeeeeeE--------EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCc
Confidence            998642110        1124678999999999999999997 333444556666665544432 122333444323333


Q ss_pred             EEEeC
Q 029252          181 RKVIF  185 (196)
Q Consensus       181 ~~id~  185 (196)
                      ++||+
T Consensus       142 l~i~~  146 (147)
T cd02020         142 IVIDT  146 (147)
T ss_pred             EEEeC
Confidence            45554

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.56  E-value=7.1e-14  Score=98.27  Aligned_cols=30  Identities=30%  Similarity=0.581  Sum_probs=26.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      .++|+|.|+.|+||||+|+.|+++++..++
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~   33 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF   33 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence            478999999999999999999999985443

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.56  E-value=6.1e-13  Score=91.64  Aligned_cols=109  Identities=20%  Similarity=0.281  Sum_probs=64.4

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 029252           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI  103 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii  103 (196)
                      |+|+|+|||||||+++.|++.+++.+++.|+++......  .....+...   +...........+.. +.. ....+|.
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~~---~~~~~~~~e~~~~~~-~~~-~~~~vi~   74 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAEE---GEEGFRELEREVLLL-LLT-KENAVIA   74 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHHH---CHHHHHHHHHHHHHH-Hhc-cCCcEEE
Confidence            789999999999999999999999999999887765322  111111111   110000111112222 221 2343443


Q ss_pred             eccC--CCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          104 DGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       104 dg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .|..  ........+.     ...++|||++|++++.+|+..|
T Consensus        75 ~g~~~i~~~~~~~~~~-----~~~~~i~l~~~~e~~~~R~~~r  112 (154)
T cd00464          75 TGGGAVLREENRRLLL-----ENGIVVWLDASPEELLERLARD  112 (154)
T ss_pred             CCCCccCcHHHHHHHH-----cCCeEEEEeCCHHHHHHHhccC
Confidence            3321  2222212222     2457999999999999999887

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.56  E-value=6.1e-15  Score=97.62  Aligned_cols=106  Identities=31%  Similarity=0.494  Sum_probs=61.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc----CC
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES----GN   98 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~   98 (196)
                      +|+|.|+|||||||+|+.|++++++.++++|++++...-.  +.        ..+.........+.+...+...    ..
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~   70 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWI--ER--------DDDEREYIDADIDLLDDILEQLQNKPDN   70 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHC--HG--------CTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccc--cc--------CcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence            5899999999999999999999999999999953211000  00        0001000122233333333322    47


Q ss_pred             CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ..||+||... ... ..    .....+.++|+..+.+++.+|+.+|
T Consensus        71 ~~~ii~g~~~-~~~-~~----~~~~~~~~i~l~~~~~~~~~~~~~R  110 (121)
T PF13207_consen   71 DNWIIDGSYE-SEM-EI----RLPEFDHVIYLDAPDEECRERRLKR  110 (121)
T ss_dssp             -EEEEECCSC-HCC-HS----CCHHGGCEEEEEEEEHHHHHHHHHH
T ss_pred             CeEEEeCCCc-cch-hh----hhhcCCEEEEEECCCHHHHHHHHHH
Confidence            7899999433 211 10    1112357999999988666666555

...

>TIGR00152 dephospho-CoA kinase

Probab=99.56  E-value=1.1e-13  Score=98.46  Aligned_cols=153  Identities=18%  Similarity=0.232  Sum_probs=93.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH-----cCCCCC----------------
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-----EGKIVP----------------   81 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----------------   81 (196)
                      +|+|+|.+||||||+++.|++..++.+++.|++.+..+..+......+...+.     ....+.                
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~   80 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK   80 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence            48999999999999999999887799999999999887776543332322221     111111                


Q ss_pred             ------HHHHHHHHHHHHHhcC--CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252           82 ------SEVTIKLLQKAMEESG--NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (196)
Q Consensus        82 ------~~~~~~~~~~~l~~~~--~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~  153 (196)
                            +......+...+.+..  +..+|++. |...+.  .    ....+|.++++++|.+++.+|+..|    ...+.
T Consensus        81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~-pll~e~--~----~~~~~D~vv~V~~~~~~~~~Rl~~R----~~~s~  149 (188)
T TIGR00152        81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDV-PLLFEN--K----LRSLCDRVIVVDVSPQLQLERLMQR----DNLTE  149 (188)
T ss_pred             HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEc-hHhhhC--C----cHHhCCEEEEEECCHHHHHHHHHHc----CCCCH
Confidence                  1111233333333222  23555653 322211  1    1224788999999999999999988    35556


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      +.+..|+....    +... ..... -++|+++.+++++
T Consensus       150 ~~~~~r~~~q~----~~~~-~~~~a-d~vI~N~~~~e~l  182 (188)
T TIGR00152       150 EEVQKRLASQM----DIEE-RLARA-DDVIDNSATLADL  182 (188)
T ss_pred             HHHHHHHHhcC----CHHH-HHHhC-CEEEECCCCHHHH
Confidence            77777776653    2211 12223 3467777777654

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.55  E-value=1.3e-13  Score=97.92  Aligned_cols=153  Identities=18%  Similarity=0.164  Sum_probs=87.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH----HHc-CCcchHHHHHHHHcCCCCCHH--------HHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKS-GSENGTMIQNMIKEGKIVPSE--------VTIK   87 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~   87 (196)
                      +.+++|.||+||||||+++.|+..++..++..+..+...    ... -.-..+.+...+..+.+....        +.. 
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~-   80 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI-   80 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH-
Confidence            468999999999999999999988765443322221111    000 111223333333333221110        002 


Q ss_pred             HHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcc
Q 029252           88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESS  167 (196)
Q Consensus        88 ~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~  167 (196)
                      .+...+.  .+..+|++|.-.   ....+.+ .......+|||++|.+++.+|+..|  ++.  +.+.+..|+....   
T Consensus        81 ~~~~~l~--~g~~VI~~G~~~---~~~~~~~-~~~~~~~vi~l~~s~e~l~~RL~~R--~~~--~~~~i~~rl~r~~---  147 (186)
T PRK10078         81 EIDLWLH--AGFDVLVNGSRA---HLPQARA-RYQSALLPVCLQVSPEILRQRLENR--GRE--NASEINARLARAA---  147 (186)
T ss_pred             HHHHHHh--CCCEEEEeChHH---HHHHHHH-HcCCCEEEEEEeCCHHHHHHHHHHh--CCC--CHHHHHHHHHHhh---
Confidence            2444554  367788887521   1122222 2334456899999999999999988  433  4456777774321   


Q ss_pred             hhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          168 LPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       168 ~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                           .|. ....+++|++.++++++
T Consensus       148 -----~~~-~ad~~vi~~~~s~ee~~  167 (186)
T PRK10078        148 -----RYQ-PQDCHTLNNDGSLRQSV  167 (186)
T ss_pred             -----hhc-cCCEEEEeCCCCHHHHH
Confidence                 222 34567888887877654

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.55  E-value=2.1e-13  Score=95.56  Aligned_cols=111  Identities=16%  Similarity=0.286  Sum_probs=67.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  100 (196)
                      +..|+|.|++||||||+++.|++.+++.+++.|........  ......+.   ..|...........+.....   ...
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~i~~~~~---~~g~~~fr~~e~~~l~~l~~---~~~   75 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADIGWVFD---VEGEEGFRDREEKVINELTE---KQG   75 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cCHhHHHH---HhCHHHHHHHHHHHHHHHHh---CCC
Confidence            45799999999999999999999999999999876655422  11111111   11111111122333333222   223


Q ss_pred             EEEe-c--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          101 FLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       101 ~iid-g--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      +++. |  ..........+..     ...+|||++|.+++.+|+..+
T Consensus        76 ~vi~~ggg~v~~~~~~~~l~~-----~~~vv~L~~~~e~~~~Ri~~~  117 (172)
T PRK05057         76 IVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRD  117 (172)
T ss_pred             EEEEcCCchhCCHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCC
Confidence            4443 2  2233344444444     357999999999999999765

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.54  E-value=7.2e-14  Score=103.77  Aligned_cols=145  Identities=18%  Similarity=0.285  Sum_probs=83.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      +|+|+|+|||||||+|+.|++.++     ..+++. |.++..+..   +........       .......+...+.  .
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~---~~~~~e~~~-------~~~~~~~i~~~l~--~   67 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPV---WKEKYEEFI-------RDSTLYLIKTALK--N   67 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHH---hhHHhHHHH-------HHHHHHHHHHHHh--C
Confidence            589999999999999999999873     334444 445544321   111111111       1222445555554  3


Q ss_pred             CCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHH
Q 029252           98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (196)
                      +..+|+|+.......+..+...  ....+..+||+++|.+++.+|...|  +.. .+.+.+...+..|..   +.. .|.
T Consensus        68 ~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R--~~~-~~~~~i~~l~~r~e~---p~~-~~~  140 (249)
T TIGR03574        68 KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER--GEK-IPNEVIKDMYEKFDE---PGT-KYS  140 (249)
T ss_pred             CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC--CCC-CCHHHHHHHHHhhCC---CCC-CCC
Confidence            5679999865444443333321  2334567999999999999999988  432 234445554444431   111 121


Q ss_pred             hcCcEEEEeCCC
Q 029252          176 AKGKVRKVIFCS  187 (196)
Q Consensus       176 ~~~~~~~id~~~  187 (196)
                      -....+.||++.
T Consensus       141 wd~~~~~vd~~~  152 (249)
T TIGR03574       141 WDLPDLTIDTTK  152 (249)
T ss_pred             ccCceEEecCCC
Confidence            123577888875

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.54  E-value=1.6e-13  Score=96.48  Aligned_cols=152  Identities=16%  Similarity=0.211  Sum_probs=88.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCHH-------------
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE-------------   83 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-------------   83 (196)
                      ++|.|+|+.||||||+++.|++ +|+.++++|.+.+..+..+.+....+.+.+...     ..+...             
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            4799999999999999999977 999999999999988776665444444433211     111111             


Q ss_pred             -----HH----HHHHHHHHHhcCC-CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252           84 -----VT----IKLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (196)
Q Consensus        84 -----~~----~~~~~~~l~~~~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~  153 (196)
                           +.    ...+...+..... ..+++|. |...+.  .    ....+|.++++.+|.++..+|+.+|    ...+.
T Consensus        80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~-pLL~E~--~----~~~~~D~vi~V~a~~e~ri~Rl~~R----~~~~~  148 (180)
T PF01121_consen   80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEI-PLLFES--G----LEKLCDEVIVVYAPEEIRIKRLMER----DGLSE  148 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT--T----GGGGSSEEEEEE--HHHHHHHHHHH----HTSTH
T ss_pred             HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEc-chhhhh--h----HhhhhceEEEEECCHHHHHHHHHhh----CCCcH
Confidence                 11    2223333332223 5666763 332222  1    2234889999999999999999998    35566


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCcee
Q 029252          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFI  191 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~  191 (196)
                      +.+..++....    +..++ ....+ ++|+++.++++
T Consensus       149 ~~~~~ri~~Q~----~~~~k-~~~ad-~vI~N~g~~~~  180 (180)
T PF01121_consen  149 EEAEARIASQM----PDEEK-RKRAD-FVIDNNGSLEE  180 (180)
T ss_dssp             HHHHHHHHTS------HHHH-HHH-S-EEEE-SSHHH-
T ss_pred             HHHHHHHHhCC----CHHHH-HHhCC-EEEECCCCCCC
Confidence            66666654433    22222 22233 37777776653

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=99.54  E-value=6.2e-14  Score=92.85  Aligned_cols=107  Identities=19%  Similarity=0.254  Sum_probs=77.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  100 (196)
                      .+.|+|+|.||+||||+|.+||+.+++.++.++|++++..- ...+.+..    + -..+..+...+.+...+.   ..+
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l-~~gyDE~y----~-c~i~DEdkv~D~Le~~m~---~Gg   77 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNL-YEGYDEEY----K-CHILDEDKVLDELEPLMI---EGG   77 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcc-hhcccccc----c-CccccHHHHHHHHHHHHh---cCC
Confidence            46699999999999999999999999999999999987511 11111111    1 123455777888888887   466


Q ss_pred             EEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .|+|=+....     |   ..-.+|++|+|.+|-+++..|+..|
T Consensus        78 ~IVDyHgCd~-----F---perwfdlVvVLr~~~s~LY~RL~sR  113 (176)
T KOG3347|consen   78 NIVDYHGCDF-----F---PERWFDLVVVLRTPNSVLYDRLKSR  113 (176)
T ss_pred             cEEeecccCc-----c---chhheeEEEEEecCchHHHHHHHHc
Confidence            7888432211     1   1123678999999999999999999

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.54  E-value=2.5e-13  Score=98.05  Aligned_cols=155  Identities=20%  Similarity=0.263  Sum_probs=92.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH-----c---CC-CCCHH-------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-----E---GK-IVPSE-------   83 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-----~---~~-~~~~~-------   83 (196)
                      .+.+|.|+|++||||||+++.|++ +|+.+++.|.+.+.....+......+...+.     .   +. .+...       
T Consensus         4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf   82 (208)
T PRK14731          4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF   82 (208)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence            357899999999999999999975 8999999998887765543322122221110     0   11 01111       


Q ss_pred             ---------------HHHHHHHHHHHhc--CC-CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc
Q 029252           84 ---------------VTIKLLQKAMEES--GN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (196)
Q Consensus        84 ---------------~~~~~~~~~l~~~--~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~  145 (196)
                                     .+...+...+...  .+ ..+++|. |...+. .     ....+|.++++.+|.+++.+|+..| 
T Consensus        83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~-pLL~e~-~-----~~~~~d~ii~V~a~~e~~~~Rl~~R-  154 (208)
T PRK14731         83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEA-AILFES-G-----GDAGLDFIVVVAADTELRLERAVQR-  154 (208)
T ss_pred             CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEe-eeeeec-C-----chhcCCeEEEEECCHHHHHHHHHHc-
Confidence                           1122222222221  12 3455553 322221 0     1234789999999999999999998 


Q ss_pred             CCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          146 QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       146 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                       ++  .+.+.+..|+..........     ... -++|+++.+++++
T Consensus       155 -~~--~s~e~~~~Ri~~q~~~~~~~-----~~a-d~vI~N~g~~e~l  192 (208)
T PRK14731        155 -GM--GSREEIRRRIAAQWPQEKLI-----ERA-DYVIYNNGTLDEL  192 (208)
T ss_pred             -CC--CCHHHHHHHHHHcCChHHHH-----HhC-CEEEECCCCHHHH
Confidence             33  36788888887654432222     223 3467778877764

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.54  E-value=8.2e-14  Score=99.13  Aligned_cols=147  Identities=20%  Similarity=0.277  Sum_probs=82.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCc------------c-hHHHHH---HHHcCCC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSE------------N-GTMIQN---MIKEGKI   79 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~------------~-~~~~~~---~~~~~~~   79 (196)
                      .++.+|.|.|+|||||||+|+.|++.++.   ..++.|+++...-.....            + .+.+.+   .+..|..
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~   85 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP   85 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence            34589999999999999999999999984   477777777643211000            0 011111   1122222


Q ss_pred             CCHHHH----HHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHH
Q 029252           80 VPSEVT----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVE  154 (196)
Q Consensus        80 ~~~~~~----~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~  154 (196)
                      +....+    ...........+...+|+||+....+  +.+.+    ..|+.||+++|.+++..|...| ...|-...+.
T Consensus        86 v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~----~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~  159 (218)
T COG0572          86 VDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD----LMDLKIFVDTDADVRLIRRIKRDVQERGRDLES  159 (218)
T ss_pred             ccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh----hcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHH
Confidence            211111    00000111111366789999765544  22222    4678999999999999999998 3333333333


Q ss_pred             HHHHHHHHHHhcchhHHHHHH
Q 029252          155 TIRKRFKVFLESSLPVVQYYE  175 (196)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~  175 (196)
                      .+.    +|....+|....|.
T Consensus       160 vi~----qy~~~vkp~~~~fI  176 (218)
T COG0572         160 VIE----QYVKTVRPMYEQFI  176 (218)
T ss_pred             HHH----HHHHhhChhhhhcc
Confidence            333    44444445554444

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.53  E-value=6.5e-13  Score=94.63  Aligned_cols=153  Identities=15%  Similarity=0.155  Sum_probs=87.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCC-----C----------CH--
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----V----------PS--   82 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~--   82 (196)
                      +.++|.|+|.+||||||+++.+++ +|++++++|++.++.+.++.+....+....+....     +          .+  
T Consensus         1 ~~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~   79 (201)
T COG0237           1 MMLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPE   79 (201)
T ss_pred             CceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHH
Confidence            357899999999999999999988 99999999999998877664433333222221110     0          00  


Q ss_pred             ------HHHHHHHHHHH---Hhc-CCCeEEEeccCCCHHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCC
Q 029252           83 ------EVTIKLLQKAM---EES-GNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (196)
Q Consensus        83 ------~~~~~~~~~~l---~~~-~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~  151 (196)
                            .+...++...+   .+. ....+++| .       ..|.+. ....++.++++.+|+++..+|+.+|  +  ..
T Consensus        80 ~~~~Le~i~hPli~~~~~~~~~~~~~~~~~~e-i-------plL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R--~--~~  147 (201)
T COG0237          80 ARLKLEKILHPLIRAEIKVVIDGARSPYVVLE-I-------PLLFEAGGEKYFDKVIVVYAPPEIRLERLMKR--D--GL  147 (201)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhCCceEEE-c-------hHHHhccccccCCEEEEEECCHHHHHHHHHhc--C--CC
Confidence                  01122222211   111 12233343 2       233331 1122789999999999999999999  3  45


Q ss_pred             cHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCcee
Q 029252          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFI  191 (196)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~  191 (196)
                      +.+....++....    +..+.+.. + -++++++.+++.
T Consensus       148 ~~e~~~~~~~~Q~----~~~ek~~~-a-d~vi~n~~~i~~  181 (201)
T COG0237         148 DEEDAEARLASQR----DLEEKLAL-A-DVVIDNDGSIEN  181 (201)
T ss_pred             CHHHHHHHHHhcC----CHHHHHhh-c-CChhhcCCCHHH
Confidence            5555555543333    22222222 2 235666665543

>PLN02422 dephospho-CoA kinase

Probab=99.53  E-value=7.9e-13  Score=96.10  Aligned_cols=152  Identities=20%  Similarity=0.173  Sum_probs=92.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHc-----CCCCCHH--------------
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSE--------------   83 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--------------   83 (196)
                      +|+|+|++||||||+++.|+ ++|+.+++.|++.++.+..+......+...++.     ...+...              
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~   81 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQ   81 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence            69999999999999999998 689999999999999888765433333322211     1111111              


Q ss_pred             ----HHHHHHHH----HHHh---cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCc
Q 029252           84 ----VTIKLLQK----AMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (196)
Q Consensus        84 ----~~~~~~~~----~l~~---~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~  152 (196)
                          +....+..    .+.+   .....+++| .|...+.  .    ....+|.++++++|++++.+|+..|    ...+
T Consensus        82 ~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E~--~----~~~~~D~vI~V~a~~e~ri~RL~~R----~g~s  150 (232)
T PLN02422         82 LLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFET--K----MDKWTKPVVVVWVDPETQLERLMAR----DGLS  150 (232)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhhc--c----hhhhCCEEEEEECCHHHHHHHHHHc----CCCC
Confidence                11222211    1111   113456666 3322221  0    2234789999999999999999988    3456


Q ss_pred             HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      .+....|+.....    ... .....+ ++|+++.+.+++
T Consensus       151 ~eea~~Ri~~Q~~----~ee-k~~~AD-~VI~N~gs~e~L  184 (232)
T PLN02422        151 EEQARNRINAQMP----LDW-KRSKAD-IVIDNSGSLEDL  184 (232)
T ss_pred             HHHHHHHHHHcCC----hhH-HHhhCC-EEEECCCCHHHH
Confidence            6777777644332    211 123333 477777777654

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.52  E-value=6.3e-13  Score=93.60  Aligned_cols=118  Identities=12%  Similarity=0.155  Sum_probs=70.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHHHHcCCcchHHHHHHHHcC--CCCCH-------HHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEG--KIVPS-------EVTIKLL   89 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~   89 (196)
                      +.+|+|.|+|||||||+++.|++.++.  .+++.|++........... .  ...-..+  ...+.       ......+
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~y~~~~~~~   78 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDA-E--GGIEFDGDGGVSPGPEFRLLEGAWYEAV   78 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhccc-c--cccccCccCCcccchHHHHHHHHHHHHH
Confidence            468999999999999999999999864  4557766654421110000 0  0000000  00011       1123334


Q ss_pred             HHHHHhcCCCeEEEeccCC-CHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           90 QKAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        90 ~~~l~~~~~~~~iidg~~~-~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ...+.  .+..+|+|.... .......+.. ....+.+.|++.+|.+++.+|..+|
T Consensus        79 ~~~l~--~G~~VIvD~~~~~~~~~r~~~~~-~~~~~~~~v~l~~~~~~l~~R~~~R  131 (175)
T cd00227          79 AAMAR--AGANVIADDVFLGRAALQDCWRS-FVGLDVLWVGVRCPGEVAEGRETAR  131 (175)
T ss_pred             HHHHh--CCCcEEEeeeccCCHHHHHHHHH-hcCCCEEEEEEECCHHHHHHHHHhc
Confidence            44333  488899997443 3444444444 2223457999999999999999998

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.52  E-value=1.8e-13  Score=91.21  Aligned_cols=152  Identities=17%  Similarity=0.217  Sum_probs=100.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCH----HHHHH---HHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS----EVTIK---LLQKAM   93 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~l   93 (196)
                      +.+|++.|++||||||+++.|++++++.+++.||+.-....          .-+..|..+.+    .+..+   .+...+
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~Nv----------eKM~~GipLnD~DR~pWL~~i~~~~~~~l   81 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANV----------EKMTQGIPLNDDDRWPWLKKIAVELRKAL   81 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHH----------HHHhcCCCCCcccccHHHHHHHHHHHHHh
Confidence            45899999999999999999999999999999887544311          11222333222    23322   222233


Q ss_pred             HhcCCCeEEEeccCCCHHHHHHHHhh-----cCCCC---cEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029252           94 EESGNDKFLIDGFPRNEENRAAFEAV-----TKIEP---EFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE  165 (196)
Q Consensus        94 ~~~~~~~~iidg~~~~~~~~~~~~~~-----~~~~~---~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~  165 (196)
                      .  .++++|+-........++.+...     ....+   -.+++|..+.+++.+|+..|  .....+.+-++.++.....
T Consensus        82 ~--~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R--~gHFMp~~lleSQf~~LE~  157 (191)
T KOG3354|consen   82 A--SGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKR--KGHFMPADLLESQFATLEA  157 (191)
T ss_pred             h--cCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhc--ccccCCHHHHHHHHHhccC
Confidence            3  48889998876666666666552     11112   34899999999999999999  5566666667766654431


Q ss_pred             cchhHHHHHHhcCcEEEEeCC-CCceeEE
Q 029252          166 SSLPVVQYYEAKGKVRKVIFC-SPIFILV  193 (196)
Q Consensus       166 ~~~~~~~~~~~~~~~~~id~~-~~~e~v~  193 (196)
                         |-    .+..+++.|+.. .++|+++
T Consensus       158 ---p~----~~e~div~isv~~~~~e~iv  179 (191)
T KOG3354|consen  158 ---PD----ADEEDIVTISVKTYSVEEIV  179 (191)
T ss_pred             ---CC----CCccceEEEeeccCCHHHHH
Confidence               11    233368888887 6776654

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=4.1e-13  Score=88.95  Aligned_cols=144  Identities=19%  Similarity=0.215  Sum_probs=95.5

Q ss_pred             cCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHH---HHHHHHHHHHHhc--CCCeEE
Q 029252           28 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE---VTIKLLQKAMEES--GNDKFL  102 (196)
Q Consensus        28 G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~--~~~~~i  102 (196)
                      |.+||||||++..|++++++.+++-|++.-..         .+.+ +..|..+.++   -+...+...+.+.  .+..+|
T Consensus         2 GVsG~GKStvg~~lA~~lg~~fidGDdlHp~a---------Ni~K-M~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~v   71 (161)
T COG3265           2 GVSGSGKSTVGSALAERLGAKFIDGDDLHPPA---------NIEK-MSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVV   71 (161)
T ss_pred             CCCccCHHHHHHHHHHHcCCceecccccCCHH---------HHHH-HhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceE
Confidence            89999999999999999999999988864332         1111 2233333321   1123333333221  244466


Q ss_pred             EeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEE
Q 029252          103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRK  182 (196)
Q Consensus       103 idg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (196)
                      +-.......+++.+.. .... ..+|||+.+.+++.+|+..|  .....+..-+..++.....   |     .....++.
T Consensus        72 i~CSALKr~YRD~LR~-~~~~-~~Fv~L~g~~~~i~~Rm~~R--~gHFM~~~ll~SQfa~LE~---P-----~~de~vi~  139 (161)
T COG3265          72 IACSALKRSYRDLLRE-ANPG-LRFVYLDGDFDLILERMKAR--KGHFMPASLLDSQFATLEE---P-----GADEDVLT  139 (161)
T ss_pred             EecHHHHHHHHHHHhc-cCCC-eEEEEecCCHHHHHHHHHhc--ccCCCCHHHHHHHHHHhcC---C-----CCCCCEEE
Confidence            6666566666666665 3323 46999999999999999999  7777777777777655431   1     22226999


Q ss_pred             EeCCCCceeEE
Q 029252          183 VIFCSPIFILV  193 (196)
Q Consensus       183 id~~~~~e~v~  193 (196)
                      ||.+.++++++
T Consensus       140 idi~~~~e~vv  150 (161)
T COG3265         140 IDIDQPPEEVV  150 (161)
T ss_pred             eeCCCCHHHHH
Confidence            99999998775

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.49  E-value=9.1e-13  Score=96.63  Aligned_cols=155  Identities=14%  Similarity=0.069  Sum_probs=92.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHc-----CCCCCHHHH-----------
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT-----------   85 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----------   85 (196)
                      .+|.|+|.+||||||+++.|.+++|+.+++.|.+.++.+..+.+....+...+..     ...+.....           
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~   81 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR   81 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999998899999999999999877665433333222211     111211111           


Q ss_pred             -----------HHHHHHHHHh-----------cC-CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHh
Q 029252           86 -----------IKLLQKAMEE-----------SG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL  142 (196)
Q Consensus        86 -----------~~~~~~~l~~-----------~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~  142 (196)
                                 ...+...+.+           .. ...+|+|. |...+.. .    ....+|.++++.+|.++..+|+.
T Consensus        82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev-PLL~E~~-~----~~~~~D~iv~V~a~~e~ri~RL~  155 (244)
T PTZ00451         82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA-PTLFETK-T----FTYFVSASVVVSCSEERQIERLR  155 (244)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe-chhhccC-c----hhhcCCeEEEEECCHHHHHHHHH
Confidence                       1111111210           01 23566773 2222210 0    11246899999999999999999


Q ss_pred             hccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCC--CCceeE
Q 029252          143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFC--SPIFIL  192 (196)
Q Consensus       143 ~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~e~v  192 (196)
                      +|    ...+.+.+.+|+....   +.  .......++ +|+++  .+++++
T Consensus       156 ~R----~g~s~eea~~Ri~~Q~---~~--~ek~~~aD~-VI~N~~~g~~~~L  197 (244)
T PTZ00451        156 KR----NGFSKEEALQRIGSQM---PL--EEKRRLADY-IIENDSADDLDEL  197 (244)
T ss_pred             Hc----CCCCHHHHHHHHHhCC---CH--HHHHHhCCE-EEECCCCCCHHHH
Confidence            88    3456677888875522   11  122334444 56666  666653

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=99.49  E-value=6.9e-13  Score=96.53  Aligned_cols=168  Identities=17%  Similarity=0.239  Sum_probs=95.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec---HHHHHHHHHHcC--------Cc-c-hHHHHHHHHcCCC------
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS---AGDLLRAEIKSG--------SE-N-GTMIQNMIKEGKI------   79 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~---~~d~~~~~~~~~--------~~-~-~~~~~~~~~~~~~------   79 (196)
                      .+.++|++.|+.|||||++|+.||+++++.++.   +|+++-......        .+ . ...+.........      
T Consensus        69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~  148 (393)
T KOG3877|consen   69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAM  148 (393)
T ss_pred             ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHH
Confidence            356899999999999999999999999976654   555443321110        00 0 0111111111100      


Q ss_pred             ------CCHHHHHHHHHHHHHhcCCCeEEEeccCCC-HHHHHHHHh--------------h------cCCCCcEEEEEEc
Q 029252           80 ------VPSEVTIKLLQKAMEESGNDKFLIDGFPRN-EENRAAFEA--------------V------TKIEPEFVLFFDC  132 (196)
Q Consensus        80 ------~~~~~~~~~~~~~l~~~~~~~~iidg~~~~-~~~~~~~~~--------------~------~~~~~~~~i~l~~  132 (196)
                            ...+.+.+.++..+.  .+++|+++..|.+ .-..+.+.+              +      ....|.++|||++
T Consensus       149 Q~r~y~~R~~QY~dAL~HiL~--TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~  226 (393)
T KOG3877|consen  149 QDRIYNCRFDQYLDALAHILN--TGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDT  226 (393)
T ss_pred             HHHHHHhHHHHHHHHHHHHHh--cCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcC
Confidence                  001122333443343  4899999986643 222222111              1      4577889999999


Q ss_pred             CHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcc-hhHHHHHHhcCcEEEEeCCCCce
Q 029252          133 SEEEMERRILNRNQGREDDNVETIRKRFKVFLESS-LPVVQYYEAKGKVRKVIFCSPIF  190 (196)
Q Consensus       133 ~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~id~~~~~e  190 (196)
                      |...++++++.|  |.+++-.-.-...++...+.+ ..++..|..++.+...|.+.+-+
T Consensus       227 Pv~~v~~~Ik~r--g~~~Eik~~s~aYL~diE~~YK~~fL~e~s~h~eiL~Ydwt~~gd  283 (393)
T KOG3877|consen  227 PVNKVLENIKRR--GNTDEIKTVSEAYLKDIEESYKDSFLREYSNHSEILAYDWTKPGD  283 (393)
T ss_pred             CcHHHHHHHHhc--CCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhheeeeecccCCC
Confidence            999999999999  544433111111111111111 13356677778888888886554

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.49  E-value=4.8e-13  Score=95.51  Aligned_cols=152  Identities=18%  Similarity=0.121  Sum_probs=90.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCH---------------
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPS---------------   82 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---------------   82 (196)
                      +|+|+|++||||||+++.|+ .+|..+++.|.+.+..+..+.+....+.+.+...     ..+..               
T Consensus         1 ~i~itG~~gsGKst~~~~l~-~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILE-ELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             CEEEECCCCccHHHHHHHHH-HCCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence            47999999999999999886 4799999999999988776654333333322111     11111               


Q ss_pred             ---HHH----HHHHHHHHHhc-CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHH
Q 029252           83 ---EVT----IKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (196)
Q Consensus        83 ---~~~----~~~~~~~l~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~  154 (196)
                         .+.    ...+...+... .+..+|+| .|...+. .     ....+|.++|+++|++++.+|+..|    ...+.+
T Consensus        80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e-~pLL~E~-~-----~~~~~D~vi~V~a~~e~r~~RL~~R----~g~s~e  148 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQTTAEGKLVIWE-VPLLFET-D-----AYTLCDATVTVDSDPEESILRTISR----DGMKKE  148 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCcEEEE-eeeeeEc-C-----chhhCCEEEEEECCHHHHHHHHHHc----CCCCHH
Confidence               111    22222223222 13445555 3333221 0     1224789999999999999999988    334567


Q ss_pred             HHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      ....|+....    +.. ......++ +|+++.+++++
T Consensus       149 ~a~~ri~~Q~----~~~-~k~~~aD~-vI~N~~~~~~l  180 (196)
T PRK14732        149 DVLARIASQL----PIT-EKLKRADY-IVRNDGNREGL  180 (196)
T ss_pred             HHHHHHHHcC----CHH-HHHHhCCE-EEECCCCHHHH
Confidence            7777775522    222 22333444 56777676653

>PTZ00301 uridine kinase; Provisional

Probab=99.49  E-value=1.9e-13  Score=98.31  Aligned_cols=115  Identities=17%  Similarity=0.194  Sum_probs=64.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHHHHHHHcCCcchHHHHHHHHcC--CCCCHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG--KIVPSEVTIKLLQ   90 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   90 (196)
                      +..+|.|.|+|||||||+|+.|+++++       ..+++.|++++....    ...........+  .....+.+...+.
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~----~~~~~~~~~~~d~p~a~D~~~l~~~l~   77 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSN----IPESERAYTNYDHPKSLEHDLLTTHLR   77 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCccc----CCHHHhcCCCCCChhhhCHHHHHHHHH
Confidence            357899999999999999999988762       236677776643210    000000000000  0011111222221


Q ss_pred             HHHH----------------------hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           91 KAME----------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        91 ~~l~----------------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ....                      -.+...+|+||.+....  ..+..    ..|+.||+++|.++++.|...|
T Consensus        78 ~L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~----l~D~~ifvd~~~d~~~~Rr~~R  147 (210)
T PTZ00301         78 ELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRN----EMDCLIFVDTPLDICLIRRAKR  147 (210)
T ss_pred             HHHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHH----hCCEEEEEeCChhHHHHHHHhh
Confidence            1110                      01245677899765211  12222    4678999999999999999999

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.49  E-value=7.4e-13  Score=108.02  Aligned_cols=117  Identities=18%  Similarity=0.246  Sum_probs=76.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      .+...|+|.|+|||||||+++.||+++++.+++.|+.+.+..      +..+.+++ ..|...+.++-...+...+..  
T Consensus         4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~--   75 (542)
T PRK14021          4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLED--   75 (542)
T ss_pred             CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            345679999999999999999999999999999999887763      23333333 334444444545555554432  


Q ss_pred             CCeEEEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           98 NDKFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        98 ~~~~iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ...+|--|  .....+....+.+. ...--.+|||++|++++.+|+..+
T Consensus        76 ~~~VIs~GGG~v~~~~n~~~L~~~-~~~~g~vv~L~~~~~~l~~Rl~~~  123 (542)
T PRK14021         76 FDGIFSLGGGAPMTPSTQHALASY-IAHGGRVVYLDADPKEAMERANRG  123 (542)
T ss_pred             CCeEEECCCchhCCHHHHHHHHHH-HhcCCEEEEEECCHHHHHHHHhCC
Confidence            33344222  34444544444321 111236999999999999998754

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.48  E-value=3.3e-12  Score=89.77  Aligned_cols=151  Identities=15%  Similarity=0.184  Sum_probs=88.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH----HHcCCcchHHHHHHHHcCCCCCH-HHHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGTMIQNMIKEGKIVPS-EVTIKLLQKAMEE   95 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~   95 (196)
                      +.+++|.|++||||||+++.|+..++..+++.+++....    ...+-.+..        ....++ ....+..... ..
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~--------~~~~~~~~~~~~~~~~~-~~   73 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTD--------EDRLPWLERLNDASYSL-YK   73 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCc--------ccchHHHHHHHHHHHHH-Hh
Confidence            457999999999999999999999988888776643211    000110000        000111 1111222111 12


Q ss_pred             cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHH
Q 029252           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (196)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (196)
                      ....++|+..+ ......+.+.+  ...+..+|||++|++++.+|+.+|  .....+.+.+..++..+..   +    ..
T Consensus        74 ~~~~g~iv~s~-~~~~~R~~~r~--~~~~~~~v~l~a~~~~l~~Rl~~R--~~~~~~~~vl~~Q~~~~e~---~----~~  141 (176)
T PRK09825         74 KNETGFIVCSS-LKKQYRDILRK--SSPNVHFLWLDGDYETILARMQRR--AGHFMPPDLLQSQFDALER---P----CA  141 (176)
T ss_pred             cCCCEEEEEEe-cCHHHHHHHHh--hCCCEEEEEEeCCHHHHHHHHhcc--cCCCCCHHHHHHHHHHcCC---C----CC
Confidence            12556676443 44444454443  334557999999999999999999  3344555666665544431   1    11


Q ss_pred             hcCcEEEEeCCCCceeE
Q 029252          176 AKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       176 ~~~~~~~id~~~~~e~v  192 (196)
                      .+..++.+|++.+++++
T Consensus       142 ~e~~~~~~d~~~~~~~~  158 (176)
T PRK09825        142 DEHDIARIDVNHDIENV  158 (176)
T ss_pred             CcCCeEEEECCCCHHHH
Confidence            22359999999987543

>COG0645 Predicted kinase [General function prediction only]

Probab=99.48  E-value=5.3e-12  Score=85.95  Aligned_cols=133  Identities=20%  Similarity=0.256  Sum_probs=86.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCH---HH---HHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS---EV---TIKLLQKAMEE   95 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~l~~   95 (196)
                      .++++.|.|||||||+|+.|++.++...|..|++-+..... +.....-     .|-+.+.   ..   ........+. 
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~-p~~~r~~-----~g~ys~~~~~~vy~~l~~~A~l~l~-   74 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGV-PEETRGP-----AGLYSPAATAAVYDELLGRAELLLS-   74 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCC-cccccCC-----CCCCcHHHHHHHHHHHHHHHHHHHh-
Confidence            57899999999999999999999999999997766655331 1110000     1111111   11   1222233333 


Q ss_pred             cCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252           96 SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV  162 (196)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~  162 (196)
                       .+..+|+|+.+....++......  ....+..+|.+++|.+++..|+..|..+-++.....+..+...
T Consensus        75 -~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~sDA~~~il~~q~~~  142 (170)
T COG0645          75 -SGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDASDATFDILRVQLAE  142 (170)
T ss_pred             -CCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcccchHHHHHHHHhh
Confidence             49999999977777777666553  3333456899999999999999999333455555555554433

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.48  E-value=1.6e-12  Score=92.15  Aligned_cols=135  Identities=21%  Similarity=0.277  Sum_probs=86.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCc--------chHHHHHHHHcCCCCCHH-------
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSE--------NGTMIQNMIKEGKIVPSE-------   83 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-------   83 (196)
                      .++.+|+|.|||||||||+++.|.+++...+++.....|.. +.++.        ..+.+..++..+.++.+.       
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~-r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y   80 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP-RPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY   80 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC-CCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence            35789999999999999999999988743344444444433 21211        125566666666654332       


Q ss_pred             -HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcC-HHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 029252           84 -VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFK  161 (196)
Q Consensus        84 -~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~r~~~~~~~~~~~~~  161 (196)
                       +....+...+.  .++.+|+|-.   .+....+.. .....-++||+.+| .+++.+|+.+|    ...+.+.+.+|+.
T Consensus        81 Gt~~~~i~~~~~--~g~~~i~d~~---~~g~~~l~~-~~~~~~~~Ifi~pps~e~l~~RL~~R----~~~s~e~i~~Rl~  150 (186)
T PRK14737         81 GTPKAFIEDAFK--EGRSAIMDID---VQGAKIIKE-KFPERIVTIFIEPPSEEEWEERLIHR----GTDSEESIEKRIE  150 (186)
T ss_pred             cCcHHHHHHHHH--cCCeEEEEcC---HHHHHHHHH-hCCCCeEEEEEECCCHHHHHHHHHhc----CCCCHHHHHHHHH
Confidence             22555666665  5888888843   344444444 33222257888775 68899999877    4446678888887


Q ss_pred             HHH
Q 029252          162 VFL  164 (196)
Q Consensus       162 ~~~  164 (196)
                      ...
T Consensus       151 ~~~  153 (186)
T PRK14737        151 NGI  153 (186)
T ss_pred             HHH
Confidence            644

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.47  E-value=3.4e-13  Score=97.31  Aligned_cols=159  Identities=19%  Similarity=0.195  Sum_probs=90.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc---CCc----chHHHHHHHHcCCCCCHH-------
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE-------   83 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~-------   83 (196)
                      +.++.+|+|+|||||||||+++.|.+......+......+..-..   +..    ....+...+..+.++.+.       
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y   89 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY   89 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence            456789999999999999999999764321111111111110000   000    113344444444443221       


Q ss_pred             -HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEc--CHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 029252           84 -VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC--SEEEMERRILNRNQGREDDNVETIRKRF  160 (196)
Q Consensus        84 -~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~--~~~~~~~R~~~R~~~r~~~~~~~~~~~~  160 (196)
                       +....+...+.  .+..+|++...   +....+.+   ..|+.++++.+  +.+++.+|+..|  +  .++.+.+.+|+
T Consensus        90 Gt~~~~i~~~~~--~g~~vi~~~~~---~g~~~l~~---~~pd~~~if~~pps~e~l~~Rl~~R--~--~~~~~~~~~Rl  157 (206)
T PRK14738         90 GVPKAPVRQALA--SGRDVIVKVDV---QGAASIKR---LVPEAVFIFLAPPSMDELTRRLELR--R--TESPEELERRL  157 (206)
T ss_pred             cCCHHHHHHHHH--cCCcEEEEcCH---HHHHHHHH---hCCCeEEEEEeCCCHHHHHHHHHHc--C--CCCHHHHHHHH
Confidence             11345665555  47778888533   33444443   23666655555  456889999988  3  34567788888


Q ss_pred             HHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          161 KVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      ..+......     .....++.||++.++++++
T Consensus       158 ~~~~~e~~~-----~~~~~~~iId~~~~~e~v~  185 (206)
T PRK14738        158 ATAPLELEQ-----LPEFDYVVVNPEDRLDEAV  185 (206)
T ss_pred             HHHHHHHhc-----ccCCCEEEECCCCCHHHHH
Confidence            776543221     1223588999988887654

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.47  E-value=3.5e-12  Score=102.76  Aligned_cols=101  Identities=22%  Similarity=0.354  Sum_probs=78.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      ..++.+|+|.|+|||||||+|+.++...++.+++.|++-.                        .......+...+.  .
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------------~~~~~~~a~~~L~--~  419 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------------TQNCLTACERALD--Q  419 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------------HHHHHHHHHHHHh--C
Confidence            4567899999999999999999999999999999977521                        1112344555665  4


Q ss_pred             CCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      +..+|+|........+..+.++  ...-+..++|+++|.+++++|+..|
T Consensus       420 G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R  468 (526)
T TIGR01663       420 GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFR  468 (526)
T ss_pred             CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhh
Confidence            8889999988888777776665  2333446999999999999999999

Note that the EC number for the kinase function is: 2.7.1.78

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.47  E-value=6.6e-13  Score=96.13  Aligned_cols=118  Identities=19%  Similarity=0.281  Sum_probs=66.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-   94 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-   94 (196)
                      .++.+|.|.|+|||||||+++.|++.++   ..+++.|+++......  +.................+.....+..... 
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~   81 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHL--SFEERVKTNYDHPDAFDHDLLIEHLKALKAG   81 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccC--CHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence            4678999999999999999999999983   4567777765432000  000000000000001111122222222111 


Q ss_pred             ---------------------hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           95 ---------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        95 ---------------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                                           ......+|+||.+....  ..    ....+|.+||+++|.+++.+|...|
T Consensus        82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~----~~~~~d~~I~v~~~~~~~~~R~~~R  146 (209)
T PRK05480         82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ER----LRDLMDIKIFVDTPLDIRLIRRLKR  146 (209)
T ss_pred             CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hh----HhhhhceeEEEeCChhHHHHHHHhh
Confidence                                 11234678898654321  11    1224688999999999999999988

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.46  E-value=1.7e-12  Score=99.15  Aligned_cols=117  Identities=15%  Similarity=0.200  Sum_probs=70.7

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (196)
                      ...++..|+|+|+|||||||+++.|++++++.+++.|..+....  +....+.+..   .|......+....+...+.. 
T Consensus       129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~--G~~i~ei~~~---~G~~~fr~~e~~~l~~ll~~-  202 (309)
T PRK08154        129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA--GLSVSEIFAL---YGQEGYRRLERRALERLIAE-  202 (309)
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhh-
Confidence            34566899999999999999999999999999999987766542  1111111111   12211222223344443332 


Q ss_pred             CCCeEEEeccC--CCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           97 GNDKFLIDGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        97 ~~~~~iidg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ....+|-.|..  ........+..     ..++|||++|++++.+|+..|
T Consensus       203 ~~~~VI~~Ggg~v~~~~~~~~l~~-----~~~~V~L~a~~e~~~~Rl~~r  247 (309)
T PRK08154        203 HEEMVLATGGGIVSEPATFDLLLS-----HCYTVWLKASPEEHMARVRAQ  247 (309)
T ss_pred             CCCEEEECCCchhCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHhcC
Confidence            23334433322  22222222222     346999999999999999887

>PRK13976 thymidylate kinase; Provisional

Probab=99.46  E-value=8e-12  Score=90.07  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=67.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCC-----cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCC-CHHH-----------
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV-PSEV-----------   84 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------   84 (196)
                      ++|+++|+.||||||+++.|++.|..     .++..    +  .+++...++.+.+.+...... +...           
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~----~--eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~   74 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT----R--EPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH   74 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe----e--CCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence            47999999999999999999998842     11111    0  012334445555544321111 1111           


Q ss_pred             HHHHHHHHHHhcCCCeEEEeccCCC------------HHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           85 TIKLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        85 ~~~~~~~~l~~~~~~~~iidg~~~~------------~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ....+...+.  .+..||.|.|..+            .+....+... ....||++|||++|++++.+|+..|
T Consensus        75 ~~~~I~p~l~--~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~  145 (209)
T PRK13976         75 FVKVILPALL--QGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN  145 (209)
T ss_pred             HHHHHHHHHH--CCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc
Confidence            0122333333  4788999975422            1122222221 3356999999999999999998644

>PRK12338 hypothetical protein; Provisional

Probab=99.46  E-value=4.6e-12  Score=95.78  Aligned_cols=124  Identities=18%  Similarity=0.308  Sum_probs=77.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC--Ccc-----hHHHHHH--HHcCC-CCC--------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG--SEN-----GTMIQNM--IKEGK-IVP--------   81 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~--~~~-----~~~~~~~--~~~~~-~~~--------   81 (196)
                      +|.+|+|.|+|||||||+|+.|++++++.++..+|.+++...+.  .++     ...+..+  +.... ..+        
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~g   82 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAG   82 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHH
Confidence            46799999999999999999999999999987788888876651  111     0111111  11000 001        


Q ss_pred             ----HHHHHHHHHHHHHh--cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           82 ----SEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        82 ----~~~~~~~~~~~l~~--~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                          .......+...+..  .++..+|+||....+........ ........+++..+++...+|+..|
T Consensus        83 f~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~-~~~~~v~~~vl~~dee~h~~Rf~~R  150 (319)
T PRK12338         83 FEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQF-EENASIHFFILSADEEVHKERFVKR  150 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhh-cccCceEEEEEECCHHHHHHHHHHh
Confidence                11222222222221  25889999998877766553221 1222334666678999999999998

>PLN02199 shikimate kinase

Probab=99.46  E-value=8e-12  Score=93.09  Aligned_cols=112  Identities=18%  Similarity=0.261  Sum_probs=72.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   99 (196)
                      +...|+|+|++||||||+++.|++.+++.+++.|.++.+... +....+.+.   ..|.....+.....+.+...  ...
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G~sI~eIf~---~~GE~~FR~~E~e~L~~L~~--~~~  174 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-GTSVAEIFV---HHGENFFRGKETDALKKLSS--RYQ  174 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-CCCHHHHHH---HhCHHHHHHHHHHHHHHHHh--cCC
Confidence            457899999999999999999999999999999998888632 222222221   22333333333444444332  133


Q ss_pred             eEEEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhh
Q 029252          100 KFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (196)
Q Consensus       100 ~~iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~  143 (196)
                      .||--|  ..........+.      --.+|||++|.+++.+|+..
T Consensus       175 ~VIStGGG~V~~~~n~~~L~------~G~vV~Ldas~E~l~~RL~~  214 (303)
T PLN02199        175 VVVSTGGGAVIRPINWKYMH------KGISIWLDVPLEALAHRIAA  214 (303)
T ss_pred             EEEECCCcccCCHHHHHHHh------CCeEEEEECCHHHHHHHHhh
Confidence            343222  333333333322      13699999999999999985

>PRK06696 uridine kinase; Validated

Probab=99.44  E-value=1.1e-12  Score=95.85  Aligned_cols=120  Identities=19%  Similarity=0.266  Sum_probs=68.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh---CC--cEecHHHHHHHHHHc---C--Cc-------c-hHHHHHHH-H---
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRAEIKS---G--SE-------N-GTMIQNMI-K---   75 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~---~~--~~~~~~d~~~~~~~~---~--~~-------~-~~~~~~~~-~---   75 (196)
                      ...+.+|+|.|+|||||||+|+.|++.+   +.  .++++|+++......   +  .+       + ...+...+ .   
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~   98 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG   98 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence            4568999999999999999999999998   43  345677776543211   0  11       0 11111111 1   


Q ss_pred             cCCC--CC---HHHHHHH-HHHH-HHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           76 EGKI--VP---SEVTIKL-LQKA-MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        76 ~~~~--~~---~~~~~~~-~~~~-l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+..  +.   .+..... .... ........+|+||.......   +    ...+|.+||+++|.+++.+|+..|
T Consensus        99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~---~----~~~~d~~i~v~~~~e~~~~R~~~R  167 (223)
T PRK06696         99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPE---L----RDLWDYKIFLDTDFEVSRRRGAKR  167 (223)
T ss_pred             CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhh---H----HhhCCEEEEEECCHHHHHHHHHHh
Confidence            1110  11   0111111 1001 11112456788985432111   1    124678999999999999999988

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.44  E-value=4.3e-12  Score=88.83  Aligned_cols=129  Identities=18%  Similarity=0.234  Sum_probs=71.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCCcc---hHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSEN---GTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   95 (196)
                      ++|+++|+|||||||+|+.|++.+.   +.+++...-+...+...+.+   .+........      .. ..++..++. 
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~k------s~-~rlldSalk-   73 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLK------SV-ERLLDSALK-   73 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHH------HH-HHHHHHHhc-
Confidence            5799999999999999999999884   33332221111111111111   1111111111      11 224555554 


Q ss_pred             cCCCeEEEeccCCCHHHH---HHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029252           96 SGNDKFLIDGFPRNEENR---AAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL  164 (196)
Q Consensus        96 ~~~~~~iidg~~~~~~~~---~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~  164 (196)
                        ++.||+|........+   ..... ....+..+||+.+|.++|.+|...|  |.+- +.+.+.+-+..|.
T Consensus        74 --n~~VIvDdtNYyksmRrqL~ceak-~~~tt~ciIyl~~plDtc~rrN~er--gepi-p~Evl~qly~RfE  139 (261)
T COG4088          74 --NYLVIVDDTNYYKSMRRQLACEAK-ERKTTWCIIYLRTPLDTCLRRNRER--GEPI-PEEVLRQLYDRFE  139 (261)
T ss_pred             --ceEEEEecccHHHHHHHHHHHHHH-hcCCceEEEEEccCHHHHHHhhccC--CCCC-CHHHHHHHHHhhc
Confidence              7788899743322222   22222 5666788999999999999999777  3332 2344444444443

>COG4639 Predicted kinase [General function prediction only]

Probab=99.44  E-value=1.5e-11  Score=82.27  Aligned_cols=125  Identities=20%  Similarity=0.137  Sum_probs=82.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-EGKIVPSEVTIKLLQKAMEESGND   99 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~   99 (196)
                      ..++++.|+|||||||+++..  ..+...++.+++-...-..       ...... .....-+++....++..+.  .++
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~lg~~-------~~~e~sqk~~~~~~~~l~~~l~qrl~--~Gk   70 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLLGVS-------ASKENSQKNDELVWDILYKQLEQRLR--RGK   70 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHhhhc-------hhhhhccccHHHHHHHHHHHHHHHHH--cCC
Confidence            568999999999999999864  3367788887866543110       011111 1111223455666676666  589


Q ss_pred             eEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHH
Q 029252          100 KFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKR  159 (196)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~  159 (196)
                      ..|+|.+....+.+..+.++  ...-..+.++++.|.+.|.+|...|   ..+.+++.+...
T Consensus        71 ~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~---~Rqv~~~VI~r~  129 (168)
T COG4639          71 FTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR---ERQVPEEVIPRM  129 (168)
T ss_pred             eEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc---chhCCHHHHHHH
Confidence            99999998888887777665  3333456899999999999998755   223444444443

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.43  E-value=4.5e-12  Score=88.10  Aligned_cols=145  Identities=12%  Similarity=0.112  Sum_probs=79.7

Q ss_pred             EcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH-HHc---CCcchHHHHHHHHcCCCCCH-HHHHHHHHHHHHhcCCCeE
Q 029252           27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKS---GSENGTMIQNMIKEGKIVPS-EVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        27 ~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~  101 (196)
                      .|+|||||||+++.|++.++..+++.|.+.... ...   +.++...        ...++ ............ ..+..+
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~v   71 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDD--------DRKPWLQALNDAAFAMQR-TNKVSL   71 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChh--------hHHHHHHHHHHHHHHHHH-cCCceE
Confidence            499999999999999999998888886542110 010   1111110        00001 011111111111 124445


Q ss_pred             EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEE
Q 029252          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR  181 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (196)
                      |+ ...........+.+  ...+..++||++|++++.+|+..|..  ...+.+.+..++..+.    +.   -.....++
T Consensus        72 iv-~s~~~~~~r~~~~~--~~~~~~~v~l~a~~~~l~~Rl~~R~~--~~a~~~vl~~Q~~~~e----p~---~~~e~~~~  139 (163)
T PRK11545         72 IV-CSALKKHYRDLLRE--GNPNLSFIYLKGDFDVIESRLKARKG--HFFKTQMLVTQFETLQ----EP---GADETDVL  139 (163)
T ss_pred             EE-EecchHHHHHHHHc--cCCCEEEEEEECCHHHHHHHHHhccC--CCCCHHHHHHHHHHcC----CC---CCCCCCEE
Confidence            55 43344444444443  33455799999999999999999922  2234555555544332    11   01112478


Q ss_pred             EEeCCCCceeE
Q 029252          182 KVIFCSPIFIL  192 (196)
Q Consensus       182 ~id~~~~~e~v  192 (196)
                      .+|++.+.+++
T Consensus       140 ~id~~~~~~~~  150 (163)
T PRK11545        140 VVDIDQPLEGV  150 (163)
T ss_pred             EEeCCCCHHHH
Confidence            99999886654

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=99.42  E-value=8.9e-12  Score=86.73  Aligned_cols=154  Identities=15%  Similarity=0.178  Sum_probs=96.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCC-----CCH--------------
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----VPS--------------   82 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--------------   82 (196)
                      .++.++|..||||||+++.+ +++|+++++.|-+.|+.+.++.+.-..+...++..-.     +..              
T Consensus         2 ~iVGLTGgiatGKStVs~~f-~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r   80 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVF-KALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR   80 (225)
T ss_pred             eEEEeecccccChHHHHHHH-HHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence            36899999999999999988 5999999999999999998876654444443322211     111              


Q ss_pred             ---------HHHHHHHHHHHHhc-CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCc
Q 029252           83 ---------EVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (196)
Q Consensus        83 ---------~~~~~~~~~~l~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~  152 (196)
                               .+...++++.+... .++.+|+=..|...+. ..     ......+|++.||.++..+|+.+|    ...+
T Consensus        81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~-~~-----~~~~~~tvvV~cd~~~Ql~Rl~~R----d~ls  150 (225)
T KOG3220|consen   81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA-KL-----LKICHKTVVVTCDEELQLERLVER----DELS  150 (225)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH-hH-----HhheeeEEEEEECcHHHHHHHHHh----cccc
Confidence                     11122222222111 2555554335544433 11     123556999999999999999998    3566


Q ss_pred             HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      ++..+.|++...    ++.++....  -+++|++.+++++
T Consensus       151 e~dAe~Rl~sQm----p~~~k~~~a--~~Vi~Nng~~~~l  184 (225)
T KOG3220|consen  151 EEDAENRLQSQM----PLEKKCELA--DVVIDNNGSLEDL  184 (225)
T ss_pred             HHHHHHHHHhcC----CHHHHHHhh--heeecCCCChHHH
Confidence            677777665443    444433322  3478888777653

>TIGR00235 udk uridine kinase

Probab=99.42  E-value=3.2e-12  Score=92.41  Aligned_cols=121  Identities=17%  Similarity=0.243  Sum_probs=66.5

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHH------cCCcc-------hHHHHHH---HHcCC
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIK------SGSEN-------GTMIQNM---IKEGK   78 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~~~~------~~~~~-------~~~~~~~---~~~~~   78 (196)
                      ++++.+|+|.|++||||||+++.|+..++   ..+++.|+.+.....      .+..+       ...+.+.   +..+.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~   82 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS   82 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence            45668999999999999999999998875   456777665432100      00000       0000000   11111


Q ss_pred             CCCHHHHH----HHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           79 IVPSEVTI----KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        79 ~~~~~~~~----~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+....+.    ..............+|+||.+...+.  .+.    ..++.+||+++|.+++.+|+..|
T Consensus        83 ~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~--~~~----~~~d~~I~v~~~~~~~l~R~~~R  146 (207)
T TIGR00235        83 PIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDE--RLR----DLMDLKIFVDTPLDIRLIRRIER  146 (207)
T ss_pred             CEecccceeecCCCCCceEEeCCCCEEEEEehhhhchH--hHH----HhCCEEEEEECChhHHHHHHHHH
Confidence            11100000    00000000012456889987653321  122    24778999999999999999888

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.42  E-value=3.2e-12  Score=100.55  Aligned_cols=154  Identities=17%  Similarity=0.150  Sum_probs=89.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCH--------------
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPS--------------   82 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--------------   82 (196)
                      ..|+|+|++||||||+++.|++ +|+.+++.|.+.++.+..+......+...+..+     ..+..              
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~   80 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR   80 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            3599999999999999999986 899999999999998776553322222222111     11111              


Q ss_pred             --------HHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHH
Q 029252           83 --------EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (196)
Q Consensus        83 --------~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~  154 (196)
                              ..+...+.+.+....+..+++.+.+...+. .     ....+|.+||+++|.+++.+|+..|    ...+.+
T Consensus        81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~-~-----~~~~~D~iI~V~ap~e~ri~Rl~~r----Rg~s~~  150 (395)
T PRK03333         81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES-G-----MAPLFHLVVVVDADVEVRVRRLVEQ----RGMAEA  150 (395)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC-C-----chhhCCEEEEEECCHHHHHHHHHhc----CCCCHH
Confidence                    111222333333333455666655433322 0     1224789999999999999999885    122334


Q ss_pred             HHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      ....++.....    . +...... -++|+++.+.+++
T Consensus       151 ~a~~ri~~Q~~----~-e~k~~~A-D~vIdN~~s~e~l  182 (395)
T PRK03333        151 DARARIAAQAS----D-EQRRAVA-DVWLDNSGTPDEL  182 (395)
T ss_pred             HHHHHHHhcCC----h-HHHHHhC-CEEEECCCCHHHH
Confidence            44444433211    1 1112223 3467777765543

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.42  E-value=1.8e-12  Score=91.64  Aligned_cols=152  Identities=16%  Similarity=0.240  Sum_probs=82.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCc---EecHHHHHHHHHHcCCc----chHHHHHHHHcCCCC--------CHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYT---HLSAGDLLRAEIKSGSE----NGTMIQNMIKEGKIV--------PSEVTI   86 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~---~~~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~--------~~~~~~   86 (196)
                      .+++|.|+|||||||+++.|+..++..   .+....+.+.....+..    ....+......+.+.        ......
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA   81 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence            478999999999999999999987531   12111111111001111    112222222222221        000111


Q ss_pred             HHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029252           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES  166 (196)
Q Consensus        87 ~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~  166 (196)
                       .+...+.  .+..+|+++...   ....+.+ .. ....+|||++|.+++.+|+..|  +++  ..+.+.+++..... 
T Consensus        82 -~i~~~~~--~g~~vv~~g~~~---~~~~~~~-~~-~~~~~i~l~~~~~~~~~Rl~~R--~~~--~~~~~~~rl~~~~~-  148 (179)
T TIGR02322        82 -EIDQWLE--AGDVVVVNGSRA---VLPEARQ-RY-PNLLVVNITASPDVLAQRLAAR--GRE--SREEIEERLARSAR-  148 (179)
T ss_pred             -HHHHHHh--cCCEEEEECCHH---HHHHHHH-HC-CCcEEEEEECCHHHHHHHHHHc--CCC--CHHHHHHHHHHHhh-
Confidence             2333333  467788987532   2222222 22 2346999999999999999988  443  34567776643321 


Q ss_pred             chhHHHHHH-hcCcEEEEeCCCCceeEE
Q 029252          167 SLPVVQYYE-AKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       167 ~~~~~~~~~-~~~~~~~id~~~~~e~v~  193 (196)
                             |. ....++.++++.++++++
T Consensus       149 -------~~~~~~~~~vi~~~~~~ee~~  169 (179)
T TIGR02322       149 -------FAAAPADVTTIDNSGSLEVAG  169 (179)
T ss_pred             -------cccccCCEEEEeCCCCHHHHH
Confidence                   11 223577788888887654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.42  E-value=1e-11  Score=87.69  Aligned_cols=38  Identities=32%  Similarity=0.551  Sum_probs=36.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~   59 (196)
                      +.|.|-||+||||||+|+.||++||+.+++.+.++|..
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~   42 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV   42 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence            78999999999999999999999999999999988874

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.41  E-value=8.1e-12  Score=100.26  Aligned_cols=40  Identities=25%  Similarity=0.483  Sum_probs=37.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~   59 (196)
                      ++.+|.|.|++||||||+++.|++++++.+++.++++|..
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~  322 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV  322 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence            5689999999999999999999999999999999998874

>PLN02348 phosphoribulokinase

Probab=99.41  E-value=3e-12  Score=98.85  Aligned_cols=133  Identities=14%  Similarity=0.195  Sum_probs=74.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCC--------------------cEecHHHHHHHHHH--cCCcchHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY--------------------THLSAGDLLRAEIK--SGSENGTMIQNMIK   75 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~--------------------~~~~~~d~~~~~~~--~~~~~~~~~~~~~~   75 (196)
                      ...+.+|.|.|+|||||||+++.|++.++.                    .++++||+......  ......     .+.
T Consensus        46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t-----~ld  120 (395)
T PLN02348         46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVT-----ALD  120 (395)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCc-----cCC
Confidence            356789999999999999999999999852                    46888887532111  000000     000


Q ss_pred             cCCCCCHHHHHHHHHHHHH---------------------hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCH
Q 029252           76 EGKIVPSEVTIKLLQKAME---------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (196)
Q Consensus        76 ~~~~~~~~~~~~~~~~~l~---------------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~  134 (196)
                       ......+.+...+.....                     -.+...+|+||.+.....  .    ....+|+.||+++++
T Consensus       121 -P~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e--~----lr~l~D~~IyVd~~~  193 (395)
T PLN02348        121 -PRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDE--R----VRDLLDFSIYLDISD  193 (395)
T ss_pred             -cccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCc--c----ccccCcEEEEEECCH
Confidence             000011112222221110                     012567888985432221  1    223578999999999


Q ss_pred             HHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252          135 EEMERRILNRNQGREDDNVETIRKRFKV  162 (196)
Q Consensus       135 ~~~~~R~~~R~~~r~~~~~~~~~~~~~~  162 (196)
                      ++.+.|..+|...+...+.+.+.++++.
T Consensus       194 dvrl~RRI~RD~~eRG~S~EeV~~~i~a  221 (395)
T PLN02348        194 DVKFAWKIQRDMAERGHSLESIKASIEA  221 (395)
T ss_pred             HHHHHHHHHhhHhhcCCCHHHHHHHHHh
Confidence            9998888888211122345666666544

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=99.39  E-value=1.3e-11  Score=83.58  Aligned_cols=131  Identities=22%  Similarity=0.323  Sum_probs=83.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHc-C-CcchHHHHHHHHcCCCCCHHHHHH---HHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKS-G-SENGTMIQNMIKEGKIVPSEVTIK---LLQKAME   94 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~-~~~~~~~~d~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~   94 (196)
                      .++++++|.||+||||+++.+.+.+ ...+++.++++.+.... + ....+.+       ..++.+....   .....+.
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~-------Rklp~e~Q~~lq~~Aa~rI~   76 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEM-------RKLPLENQRELQAEAAKRIA   76 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHH-------hcCCHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999988 77889999988775433 1 1222222       1223322222   2222332


Q ss_pred             hcCCCeEEEeccCC----------CHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHH
Q 029252           95 ESGNDKFLIDGFPR----------NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVF  163 (196)
Q Consensus        95 ~~~~~~~iidg~~~----------~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~~~~~~~~~~  163 (196)
                      +. ...+|+|.+..          .+.+.-     ....|+.++.++.+++.+..|.... .+.|..++.+.+.+.++..
T Consensus        77 ~~-~~~iivDtH~~IkTP~GylpgLP~~Vl-----~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~n  150 (189)
T COG2019          77 EM-ALEIIVDTHATIKTPAGYLPGLPSWVL-----EELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMN  150 (189)
T ss_pred             Hh-hhceEEeccceecCCCccCCCCcHHHH-----HhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHH
Confidence            21 22278885321          111111     4567999999999999888887665 5567777788877755444


Q ss_pred             H
Q 029252          164 L  164 (196)
Q Consensus       164 ~  164 (196)
                      +
T Consensus       151 R  151 (189)
T COG2019         151 R  151 (189)
T ss_pred             H
Confidence            3

>TIGR00017 cmk cytidylate kinase

Probab=99.39  E-value=1.2e-11  Score=89.65  Aligned_cols=165  Identities=21%  Similarity=0.236  Sum_probs=89.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH----HcCCcc--hHHHHHHHHc---------C-------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSEN--GTMIQNMIKE---------G-------   77 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~----~~~~~~--~~~~~~~~~~---------~-------   77 (196)
                      |+++|.|.|++||||||+++.|++++++.+++.+++++...    ..+-..  ...+......         +       
T Consensus         1 ~~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   80 (217)
T TIGR00017         1 MAMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLN   80 (217)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEc
Confidence            35789999999999999999999999999999998876541    111111  1111111100         0       


Q ss_pred             -CCCC-----------------HHHHHHHHHHHHHhc-CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHH
Q 029252           78 -KIVP-----------------SEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME  138 (196)
Q Consensus        78 -~~~~-----------------~~~~~~~~~~~l~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~  138 (196)
                       ..+.                 ...+...+...+.+. ....||++|....-.        .....++.|||++|.++..
T Consensus        81 ~~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~~~~Vi~Gr~~~~~--------v~~~a~~~ifl~a~~~~Ra  152 (217)
T TIGR00017        81 GEDVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKNDGIIADGRDIGTV--------VFPNAEVKIFLDASVEERA  152 (217)
T ss_pred             CcchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCEEEEEcCcceE--------EeCCCCEEEEEECCHHHHH
Confidence             0000                 001122222222111 245799998521100        1223678999999999998


Q ss_pred             HHHhhc-cCCCCCCcHHHHHHHHHHHH--hcchhHHHHHHhcCcEEEEeCC-CCceeEE
Q 029252          139 RRILNR-NQGREDDNVETIRKRFKVFL--ESSLPVVQYYEAKGKVRKVIFC-SPIFILV  193 (196)
Q Consensus       139 ~R~~~R-~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~id~~-~~~e~v~  193 (196)
                      +|...| .......+.+.+.+++....  +..+.. .........++||++ .++++++
T Consensus       153 ~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~-~~~~~a~~~i~Idts~l~ieevv  210 (217)
T TIGR00017       153 KRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREV-APLKKADDALYLDTSNLSIDEVV  210 (217)
T ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHhccccccc-CcccCCCCeEEEECCCCCHHHHH
Confidence            888877 11112344455666554331  222222 222333344667775 5666654

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=99.39  E-value=1.1e-12  Score=92.58  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=32.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRA   58 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~-~~~~~~~~d~~~~   58 (196)
                      +|.|.|+|||||||+|+.|++.+ +..++++|+++..
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~   37 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP   37 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence            48899999999999999999998 6888999888764

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.39  E-value=5.2e-12  Score=87.43  Aligned_cols=102  Identities=25%  Similarity=0.395  Sum_probs=66.1

Q ss_pred             CCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCCeEEEec--c
Q 029252           30 PGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-EGKIVPSEVTIKLLQKAMEESGNDKFLIDG--F  106 (196)
Q Consensus        30 ~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~iidg--~  106 (196)
                      |||||||+++.||+++++.+++.|+++.+...      ..+.+.+. .|...........+.+.+..  ...||.-|  .
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g------~si~~i~~~~G~~~fr~~E~~~l~~l~~~--~~~VIa~GGG~   72 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG------MSISEIFAEEGEEAFRELESEALRELLKE--NNCVIACGGGI   72 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT------SHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SSEEEEE-TTG
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC------CcHHHHHHcCChHHHHHHHHHHHHHHhcc--CcEEEeCCCCC
Confidence            79999999999999999999999999877632      22333331 22222233334555554442  24444332  5


Q ss_pred             CCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          107 PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ....+..+.+..     .-.+|||+.+++++.+|+..+
T Consensus        73 ~~~~~~~~~L~~-----~g~vI~L~~~~~~l~~Rl~~~  105 (158)
T PF01202_consen   73 VLKEENRELLKE-----NGLVIYLDADPEELAERLRAR  105 (158)
T ss_dssp             GGSHHHHHHHHH-----HSEEEEEE--HHHHHHHHHHH
T ss_pred             cCcHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCC
Confidence            566666666664     346999999999999999887

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=99.38  E-value=2.1e-12  Score=92.74  Aligned_cols=158  Identities=17%  Similarity=0.237  Sum_probs=78.2

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCC--------HHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP--------SEVT   85 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~   85 (196)
                      +...|.++++.|+|||||||++..+...+   +..+++.|++....    +.+.....    .+....        ..+.
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~----p~~~~~~~----~~~~~~~~~~~~~a~~~~   82 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH----PDYDELLK----ADPDEASELTQKEASRLA   82 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS----TTHHHHHH----HHCCCTHHHHHHHHHHHH
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc----cchhhhhh----hhhhhhHHHHHHHHHHHH
Confidence            44678999999999999999999999987   57788886643221    11111111    001111        1122


Q ss_pred             HHHHHHHHHhcCCCeEEEeccCCCHHHHH-HHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc--cC------CCCCCcHH
Q 029252           86 IKLLQKAMEESGNDKFLIDGFPRNEENRA-AFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQ------GREDDNVE  154 (196)
Q Consensus        86 ~~~~~~~l~~~~~~~~iidg~~~~~~~~~-~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R--~~------~r~~~~~~  154 (196)
                      ..++..++.  .+..+|+|+......... .+..+  .++.+ .++++.+|++..+.|..+|  ..      | ...+.+
T Consensus        83 ~~~~~~a~~--~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v-~l~~v~~~~e~s~~rv~~R~~~~~~~~g~G-R~v~~~  158 (199)
T PF06414_consen   83 EKLIEYAIE--NRYNIIFEGTLSNPSKLRKLIREAKAAGYKV-ELYYVAVPPELSIERVRQRYEEGLQAKGIG-RFVPEE  158 (199)
T ss_dssp             HHHHHHHHH--CT--EEEE--TTSSHHHHHHHHHHHCTT-EE-EEEEE---HHHHHHHHHHHHHHHC-C-TT------HC
T ss_pred             HHHHHHHHH--cCCCEEEecCCCChhHHHHHHHHHHcCCceE-EEEEEECCHHHHHHHHHHHHHccccccCCC-cCCCHH
Confidence            344444444  477899999776655554 33232  34443 4888999999999999999  22      3 333344


Q ss_pred             HHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCC
Q 029252          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCS  187 (196)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~  187 (196)
                      .+.............+...+ ....+.++|.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~-~~d~i~v~d~~g  190 (199)
T PF06414_consen  159 KHDRAYANLPETLEALENEK-LFDRITVYDRDG  190 (199)
T ss_dssp             CCHCCHHHHHHHHHHHHHCT---SEEEEE-TTS
T ss_pred             HHHHHHHHHHHHHHHHHhcC-CCCEEEEEECCC
Confidence            44444444444443433221 122355555443

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.38  E-value=4.5e-12  Score=91.00  Aligned_cols=35  Identities=29%  Similarity=0.515  Sum_probs=29.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLR   57 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~d~~~   57 (196)
                      +|.|.|++||||||+++.|+..+   +..+++.|++..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~   38 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK   38 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence            48999999999999999999987   356788877653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=99.37  E-value=1.6e-11  Score=89.33  Aligned_cols=170  Identities=13%  Similarity=0.132  Sum_probs=85.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHHHHHHH---------cCCcc---hHHHHHHH---HcC-CC
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIK---------SGSEN---GTMIQNMI---KEG-KI   79 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d~~~~~~~---------~~~~~---~~~~~~~~---~~~-~~   79 (196)
                      +|.|.|++||||||+|+.|+..+.       ..++++|+++.....         .+.+.   ...+...+   ..+ ..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~   80 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN   80 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence            478999999999999999999873       356677766532210         00000   01111111   111 11


Q ss_pred             CCHHHH----HHHHHHHHH-hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc------cCCC
Q 029252           80 VPSEVT----IKLLQKAME-ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR------NQGR  148 (196)
Q Consensus        80 ~~~~~~----~~~~~~~l~-~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R------~~~r  148 (196)
                      +....+    .+....... ..+...+|+||.+........+.. .....|+.||+++|.+++.+|+..|      ..+|
T Consensus        81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~-l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r  159 (220)
T cd02025          81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLF-VSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFS  159 (220)
T ss_pred             EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhh-HHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHh
Confidence            100000    000000000 112557889996433222111111 1224788999999999988888777      1122


Q ss_pred             ---------CCCcHHHHHHHHHH-HHhcchhHHHHHHh----cC-cEEEEeCCCCceeEE
Q 029252          149 ---------EDDNVETIRKRFKV-FLESSLPVVQYYEA----KG-KVRKVIFCSPIFILV  193 (196)
Q Consensus       149 ---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~-~~~~id~~~~~e~v~  193 (196)
                               ...+.+....+... |.....+....|..    .. -++..+++.+++.+.
T Consensus       160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~~~~~~~~  219 (220)
T cd02025         160 DPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADHSIEEVY  219 (220)
T ss_pred             CchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCCCcEEEEe
Confidence                     12333445555554 66666665544432    12 345555566666553

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.37  E-value=2.1e-11  Score=98.19  Aligned_cols=112  Identities=21%  Similarity=0.303  Sum_probs=69.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  102 (196)
                      .|+|.|+|||||||+++.|++++++.+++.|+++.+..  +....+.+.   ..|.......-...+.+...  ....+|
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~--g~~i~~i~~---~~Ge~~fr~~E~~~l~~l~~--~~~~Vi   74 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE--GRSVRRIFE---EDGEEYFRLKEKELLRELVE--RDNVVV   74 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc--CCCHHHHHH---HhhhHHHHHHHHHHHHHHhh--cCCEEE
Confidence            58999999999999999999999999999999886641  222222111   12222223333344443322  123333


Q ss_pred             Eecc--CCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCC
Q 029252          103 IDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRE  149 (196)
Q Consensus       103 idg~--~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~  149 (196)
                      -.|.  ......+..+..      ..+|||++|++++.+|+..+  +|+
T Consensus        75 s~Gggvv~~~~~r~~l~~------~~vI~L~as~e~l~~Rl~~~--~RP  115 (488)
T PRK13951         75 ATGGGVVIDPENRELLKK------EKTLFLYAPPEVLMERVTTE--NRP  115 (488)
T ss_pred             ECCCccccChHHHHHHhc------CeEEEEECCHHHHHHHhccC--CCC
Confidence            2332  233344444432      25899999999999999876  555

>PRK07667 uridine kinase; Provisional

Probab=99.36  E-value=3.6e-12  Score=91.08  Aligned_cols=118  Identities=14%  Similarity=0.137  Sum_probs=68.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHc----CCcch---------HHHH----HHHHcC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKS----GSENG---------TMIQ----NMIKEG   77 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~----~~~~~---------~~~~----~~~~~~   77 (196)
                      ...+|.|.|+|||||||+|+.|++.++     ..+++.|+++......    ...+.         ..+.    ..+..+
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~   95 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE   95 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence            348999999999999999999999873     4588888877654321    11110         0010    111222


Q ss_pred             CCCCHHHHHHHHHHH----HHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           78 KIVPSEVTIKLLQKA----MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        78 ~~~~~~~~~~~~~~~----l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ..+....+.....+.    ....+...+|+||......   .+.    ..+|.+||+++|++++.+|+.+|
T Consensus        96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~~---~~~----~~~d~~v~V~~~~~~~~~R~~~r  159 (193)
T PRK07667         96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRK---EWR----DFFHYMVYLDCPRETRFLRESEE  159 (193)
T ss_pred             CeEEEeeeccccccccccceecCCCCEEEEEehhhhhh---hHH----hhceEEEEEECCHHHHHHHHhcc
Confidence            111111111000110    1111246788898653221   122    24789999999999999999987

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=99.35  E-value=5.7e-12  Score=84.06  Aligned_cols=106  Identities=27%  Similarity=0.405  Sum_probs=55.4

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC-cchHHHHHHHHcCCCCCHHHH---HHHHHHHHH-hcCC
Q 029252           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS-ENGTMIQNMIKEGKIVPSEVT---IKLLQKAME-ESGN   98 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~-~~~~   98 (196)
                      |+|.|+|||||||+|+.|+++++       +.......... .....................   ...+..... ....
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLG-------DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKG   73 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC-------HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC-------cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccC
Confidence            78999999999999999999982       22222211111 110000000111122222222   222332221 2347


Q ss_pred             CeEEEeccCCCHHHHHHHHhhcCCCCcEE-EEEEcCHHHHHHHHhhc
Q 029252           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFV-LFFDCSEEEMERRILNR  144 (196)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~-i~l~~~~~~~~~R~~~R  144 (196)
                      ..+|+|+.......        ....... |+|+||++++.+|+..|
T Consensus        74 ~~~iid~~~~~~~~--------~~~~~~~~i~L~~~~e~~~~R~~~R  112 (129)
T PF13238_consen   74 RNIIIDGILSNLEL--------ERLFDIKFIFLDCSPEELRKRLKKR  112 (129)
T ss_dssp             SCEEEEESSEEECE--------TTEEEESSEEEE--HHHHHHHHHCT
T ss_pred             CcEEEecccchhcc--------cccceeeEEEEECCHHHHHHHHHhC
Confidence            88899986432211        0011122 99999999999999998

...

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=99.35  E-value=1.1e-12  Score=93.85  Aligned_cols=110  Identities=17%  Similarity=0.228  Sum_probs=60.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC---C------cEecHHHHHHHHHHc-----C-CcchHHHHHHHHcCCCCCHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFG---Y------THLSAGDLLRAEIKS-----G-SENGTMIQNMIKEGKIVPSEVTIK   87 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~---~------~~~~~~d~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~   87 (196)
                      +|.|.|+|||||||+|+.|+..++   .      .+++.|+........     . .....      ........+.+..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------~~p~a~d~~~l~~   74 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNF------DHPDAFDFDLLKE   74 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSST------TSGGGBSHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCC------CCccccCHHHHHH
Confidence            589999999999999999999996   2      244555443221000     0 00000      0000111122333


Q ss_pred             HHHHHHHh----------------------cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           88 LLQKAMEE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        88 ~~~~~l~~----------------------~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+......                      .+...+|+||.+......  +..    ..|+.||++++.++++.|...|
T Consensus        75 ~l~~L~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~--l~~----l~D~~ifld~~~~~~l~Rri~R  147 (194)
T PF00485_consen   75 DLKALKNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE--LRD----LFDLKIFLDADEDLRLERRIQR  147 (194)
T ss_dssp             HHHHHHTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC--HGG----G-SEEEEEEE-HHHHHHHHHHH
T ss_pred             HHHHHhCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee--ecc----cceeEEEecccHHHHHHHHhhh
Confidence            33322110                      124567899965432211  222    4689999999999999999988

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.35  E-value=8.2e-12  Score=88.29  Aligned_cols=133  Identities=18%  Similarity=0.232  Sum_probs=79.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC---Cc----chHHHHHHHHcCCCCCH--------HHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG---SE----NGTMIQNMIKEGKIVPS--------EVTI   86 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~--------~~~~   86 (196)
                      .+|+|.|++||||||+++.|++.++..++......++...+.   ..    ....+...+..+.++..        ....
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~   81 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK   81 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence            579999999999999999999877654444333333221110   00    01233333333332211        1113


Q ss_pred             HHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029252           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL  164 (196)
Q Consensus        87 ~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~  164 (196)
                      ..+...+.  .+..+|+|..   ......+.+ ....+..++++..+.+.+.+|+..|    ...+.+.+..|+....
T Consensus        82 ~~i~~~~~--~g~~vi~d~~---~~~~~~~~~-~~~~~~~i~~~~~~~e~~~~Rl~~r----~~~~~~~i~~rl~~~~  149 (180)
T TIGR03263        82 SPVEEALA--AGKDVLLEID---VQGARQVKK-KFPDAVSIFILPPSLEELERRLRKR----GTDSEEVIERRLAKAK  149 (180)
T ss_pred             HHHHHHHH--CCCeEEEECC---HHHHHHHHH-hCCCcEEEEEECCCHHHHHHHHHHc----CCCCHHHHHHHHHHHH
Confidence            45555555  4778888853   334444444 3444555666678889999999988    3446677888887665

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>smart00072 GuKc Guanylate kinase homologues

Probab=99.35  E-value=5.1e-12  Score=89.68  Aligned_cols=133  Identities=23%  Similarity=0.347  Sum_probs=83.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHc---CCcc----hHHHHHHHHcCCCCCHH--------H
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKS---GSEN----GTMIQNMIKEGKIVPSE--------V   84 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~--------~   84 (196)
                      ++.|+|.|||||||+|+++.|.+.+. ...+......|....+   +..+    .+.+...++.|.++.+.        +
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            46799999999999999999998863 1222221222222111   1111    25666676666654432        2


Q ss_pred             HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEE-cCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 029252           85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFKVF  163 (196)
Q Consensus        85 ~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~  163 (196)
                      ....+...+.  .++.+|+|..+....+   +.. ....+ .+||+. .+.+++.+|+..|    .+++.+.+.+|+...
T Consensus        82 ~~~~i~~~~~--~~~~~ild~~~~~~~~---l~~-~~~~~-~vIfi~~~s~~~l~~rl~~R----~~~~~~~i~~rl~~a  150 (184)
T smart00072       82 SKETIRQVAE--QGKHCLLDIDPQGVKQ---LRK-AQLYP-IVIFIAPPSSEELERRLRGR----GTETAERIQKRLAAA  150 (184)
T ss_pred             CHHHHHHHHH--cCCeEEEEECHHHHHH---HHH-hCCCc-EEEEEeCcCHHHHHHHHHhc----CCCCHHHHHHHHHHH
Confidence            2446666665  4888999976544444   333 33333 688887 5567799999977    455677888888765


Q ss_pred             H
Q 029252          164 L  164 (196)
Q Consensus       164 ~  164 (196)
                      .
T Consensus       151 ~  151 (184)
T smart00072      151 Q  151 (184)
T ss_pred             H
Confidence            4

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.35  E-value=4.1e-11  Score=84.47  Aligned_cols=112  Identities=19%  Similarity=0.265  Sum_probs=64.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (196)
                      .++.+|++.|+|||||||+++.|++++.     ..+++.|. +++.+.... +.. ... ..      .......+...+
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~-~r~~~~~~~-~~~-~~~-~~------~~~~~~~l~~~l   74 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE-LREILGHYG-YDK-QSR-IE------MALKRAKLAKFL   74 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH-HHhhcCCCC-CCH-HHH-HH------HHHHHHHHHHHH
Confidence            3567999999999999999999999885     45555544 444332211 000 000 00      000112222223


Q ss_pred             HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhh
Q 029252           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (196)
Q Consensus        94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~  143 (196)
                      . ..+..||+|+.... ........ ....+..+|||++|++++.+|...
T Consensus        75 ~-~~g~~VI~~~~~~~-~~~~~~~~-~~~~~~~~v~l~~~~e~~~~R~~~  121 (176)
T PRK05541         75 A-DQGMIVIVTTISMF-DEIYAYNR-KHLPNYFEVYLKCDMEELIRRDQK  121 (176)
T ss_pred             H-hCCCEEEEEeCCcH-HHHHHHHH-hhcCCeEEEEEeCCHHHHHHhchh
Confidence            2 24678889875432 22222222 223345799999999999999753

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.33  E-value=2e-11  Score=83.24  Aligned_cols=112  Identities=20%  Similarity=0.198  Sum_probs=63.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHH-HHHHHcCCCCCHHHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMI-QNMIKEGKIVPSEVTIKLLQKAM   93 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l   93 (196)
                      ++.+|+|+|.|||||||+|+.|.++|.     ..+++. |.++..+..+-.+...- ...+.         ....+...+
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e~~r---------r~~~~A~ll   70 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREENIR---------RIAEVAKLL   70 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHHHHH---------HHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHHHHH---------HHHHHHHHH
Confidence            467899999999999999999999882     345555 54554433322221111 11110         023333334


Q ss_pred             HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHh
Q 029252           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL  142 (196)
Q Consensus        94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~  142 (196)
                      .+ .+..+|+.......+.++...+.......+.||++||.++|.+|-.
T Consensus        71 ~~-~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~  118 (156)
T PF01583_consen   71 AD-QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDP  118 (156)
T ss_dssp             HH-TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTT
T ss_pred             Hh-CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCc
Confidence            32 4777888865555555555554222124569999999999999943

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=99.31  E-value=1.8e-10  Score=86.41  Aligned_cols=122  Identities=16%  Similarity=0.218  Sum_probs=73.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC------cchHHHHHHHH--cCCCCCHH-------
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS------ENGTMIQNMIK--EGKIVPSE-------   83 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~-------   83 (196)
                      ..|.+|+|.|++||||||+|..|+++++...+...|.+++.++...      .........+.  ....-+++       
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~  169 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFE  169 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHH
Confidence            4678999999999999999999999999874433566765444311      00000001110  00000111       


Q ss_pred             ----H----HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEE-cCHHHHHHHHhhc
Q 029252           84 ----V----TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNR  144 (196)
Q Consensus        84 ----~----~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~R~~~R  144 (196)
                          .    ....+...+.  ++..+|++|.+..+.....+.. ..... ..++|. .+++...+|+..|
T Consensus       170 ~~~~~v~~gi~~~I~~~~~--~g~s~IiEGvhl~P~~i~~~~~-~~~~~-i~~~l~i~~ee~h~~RF~~R  235 (301)
T PRK04220        170 RHVEPVSVGVEAVIERALK--EGISVIIEGVHIVPGFIKEKYL-ENPNV-FMFVLTLSDEEAHKARFYAR  235 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHH--hCCcEEEecCCCCHHHHHHhhh-cCCCE-EEEEEEECCHHHHHHHHHHH
Confidence                1    1334444444  4889999998888877654332 22222 344444 6679999999999

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.31  E-value=9.1e-11  Score=84.68  Aligned_cols=137  Identities=20%  Similarity=0.284  Sum_probs=77.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc---CCc----chHHHHHHHHcCCCCC-----HH---H
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVP-----SE---V   84 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~~-----~~---~   84 (196)
                      ++.+|+|.|+|||||||+++.|+..++...+......+....+   +..    ....+...+..+.+..     ..   .
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   83 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT   83 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence            4578999999999999999999998763333332222221110   000    1123333333222211     01   1


Q ss_pred             HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029252           85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL  164 (196)
Q Consensus        85 ~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~  164 (196)
                      ....+...+.  .+..+|+|..+   .....+.+ ....+..++++.++.+++.+|+..|    ..++.+.+..|+..+.
T Consensus        84 ~~~~i~~~l~--~g~~vi~dl~~---~g~~~l~~-~~~~~~~I~i~~~s~~~l~~Rl~~R----~~~~~~~i~~rl~~~~  153 (205)
T PRK00300         84 PRSPVEEALA--AGKDVLLEIDW---QGARQVKK-KMPDAVSIFILPPSLEELERRLRGR----GTDSEEVIARRLAKAR  153 (205)
T ss_pred             cHHHHHHHHH--cCCeEEEeCCH---HHHHHHHH-hCCCcEEEEEECcCHHHHHHHHHhc----CCCCHHHHHHHHHHHH
Confidence            1344555554  47778888533   33333443 3333334555577889999999988    3356778888887776


Q ss_pred             hc
Q 029252          165 ES  166 (196)
Q Consensus       165 ~~  166 (196)
                      ..
T Consensus       154 ~~  155 (205)
T PRK00300        154 EE  155 (205)
T ss_pred             HH
Confidence            43

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.30  E-value=7.7e-11  Score=86.04  Aligned_cols=38  Identities=34%  Similarity=0.606  Sum_probs=35.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA   58 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~   58 (196)
                      +.+|.|.|++||||||+++.|++++++.+++.+++++.
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~   41 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA   41 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence            57899999999999999999999999999999998776

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.30  E-value=5.1e-11  Score=88.94  Aligned_cols=129  Identities=17%  Similarity=0.176  Sum_probs=66.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (196)
                      ++|+|+|.|||||||+|+.|++.+.     ..+++.+++.   +..+. +.......      .-...+...+.+.+.  
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~-y~~~~~Ek------~~R~~l~s~v~r~ls--   69 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRND-YADSKKEK------EARGSLKSAVERALS--   69 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSS-S--GGGHH------HHHHHHHHHHHHHHT--
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhh-hhchhhhH------HHHHHHHHHHHHhhc--
Confidence            4799999999999999999999762     3445543433   11111 11000000      001123455566554  


Q ss_pred             CCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCC-CCcHHHHHHHHHHHH
Q 029252           97 GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRE-DDNVETIRKRFKVFL  164 (196)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~-~~~~~~~~~~~~~~~  164 (196)
                      ....||+|+.....-.+..+..+  .......+||+++|.+.|.+|..+|  +.. ..+.+.+..-..+|.
T Consensus        70 ~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R--~~~~~~~~e~i~~m~~RfE  138 (270)
T PF08433_consen   70 KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKR--PEPERYPEETIDDMIQRFE  138 (270)
T ss_dssp             T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHT--T-S--S-HHHHHHHHHH--
T ss_pred             cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhcc--CCCCCCCHHHHHHHHHHhc
Confidence            36889999865555444443332  4444557999999999999999999  322 244455555444444

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.29  E-value=1.3e-10  Score=79.64  Aligned_cols=119  Identities=20%  Similarity=0.178  Sum_probs=69.2

Q ss_pred             cccCCCCCcEEEEEcCCCCChHHHHHHHHHHh---C-CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHH
Q 029252           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---G-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL   89 (196)
Q Consensus        14 ~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~---~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (196)
                      ..+...++.+|+++|.|||||||+|..|.++|   | ..++-.+|-+|..+..+-.+...-+...        -.-...+
T Consensus        16 ~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~en--------iRRvaev   87 (197)
T COG0529          16 EALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIEN--------IRRVAEV   87 (197)
T ss_pred             HHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHH--------HHHHHHH
Confidence            44556678899999999999999999999988   3 3444455667766554333221111100        0013334


Q ss_pred             HHHHHhcCCCeEEEeccCCCH-HHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHh
Q 029252           90 QKAMEESGNDKFLIDGFPRNE-ENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL  142 (196)
Q Consensus        90 ~~~l~~~~~~~~iidg~~~~~-~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~  142 (196)
                      ...+.  +...++|-.+-... +.++...++......+-||+++|.++|.+|--
T Consensus        88 Akll~--daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDp  139 (197)
T COG0529          88 AKLLA--DAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDP  139 (197)
T ss_pred             HHHHH--HCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCc
Confidence            44443  23334444433332 33333333233334579999999999998843

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.29  E-value=1.5e-10  Score=79.27  Aligned_cols=109  Identities=20%  Similarity=0.198  Sum_probs=64.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHH--HHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL--LQKAMEE   95 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~   95 (196)
                      +++|.|.|||||||+++.|++.+   +  ..+++. |.++..+.....+...-          .......+  ....+. 
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~~~----------~~~~~~~~~~~a~~l~-   68 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSRED----------REENIRRIAEVAKLLA-   68 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCcch----------HHHHHHHHHHHHHHHH-
Confidence            47899999999999999999988   4  344554 44444322211111000          00111111  111222 


Q ss_pred             cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhh
Q 029252           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (196)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~  143 (196)
                      ..+..+|+|........+..+.++....+..++|+++|.+++.+|...
T Consensus        69 ~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          69 DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence            247788999765555666655553223445699999999999999543

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK07429 phosphoribulokinase; Provisional

Probab=99.29  E-value=1e-10  Score=89.60  Aligned_cols=141  Identities=15%  Similarity=0.192  Sum_probs=75.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHH---HHH--cCCcc---h---HHHH---HHHHcCCCC
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRA---EIK--SGSEN---G---TMIQ---NMIKEGKIV   80 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~---~~~--~~~~~---~---~~~~---~~~~~~~~~   80 (196)
                      ..++.+|.|.|++||||||+++.|++.++   ..++..|++...   ...  +....   .   ..+.   ..+..+..+
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I   84 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI   84 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence            34678999999999999999999999887   456777776421   000  00000   0   0000   111222211


Q ss_pred             CHHHHHHHH---HHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHH
Q 029252           81 PSEVTIKLL---QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR  157 (196)
Q Consensus        81 ~~~~~~~~~---~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~  157 (196)
                      ....+....   .......+...+|+||.....+.  .+.    ..+|+.||+++|.++..+|..+|...+...+.+.+.
T Consensus        85 ~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~~--~lr----~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~  158 (327)
T PRK07429         85 LKPIYNHETGTFDPPEYIEPNKIVVVEGLHPLYDE--RVR----ELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVL  158 (327)
T ss_pred             ecceeecCCCCcCCcEecCCCcEEEEechhhcCcH--hHH----hhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHH
Confidence            111000000   00000012457889995422111  111    247899999999999998888772222233556666


Q ss_pred             HHHHHHH
Q 029252          158 KRFKVFL  164 (196)
Q Consensus       158 ~~~~~~~  164 (196)
                      .++....
T Consensus       159 ~~i~~r~  165 (327)
T PRK07429        159 AEIEARE  165 (327)
T ss_pred             HHHHHhC
Confidence            6665443

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=99.29  E-value=7.1e-10  Score=87.50  Aligned_cols=123  Identities=15%  Similarity=0.134  Sum_probs=73.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC--c----ch-HHHHH--HHHcCC------CCCHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS--E----NG-TMIQN--MIKEGK------IVPSE   83 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~--~----~~-~~~~~--~~~~~~------~~~~~   83 (196)
                      .+|.+|++.|+|||||||++..|+.++++..+...|.+++.+..--  .    .. ..+..  .+..+.      .....
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~  332 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAE  332 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHH
Confidence            4589999999999999999999999999875544466666444411  0    00 00111  110010      01101


Q ss_pred             -----------H---HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           84 -----------V---TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        84 -----------~---~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                                 +   ...++.+.+.  ++..+|+||.+..+........ .......+.+.--++++..+|+..|
T Consensus       333 vi~Gf~~q~~~V~~gi~~vI~r~l~--eG~SvIIEGVHl~P~~i~~~~~-~~~~~i~flv~isdeeeH~~Rf~~R  404 (475)
T PRK12337        333 VLRGFRDQVQQVAVGLGAIQERSAQ--EGTSLVLEGVHLVPGYLRHPYQ-AGALVVPMLVTLPDEALHRRRFELR  404 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--cCCeEEEECCCCCHHHHHHHHh-cCCceEEEEEEECCHHHHHHHHHHH
Confidence                       1   2444555555  5999999998777766553222 2222222344455778899999999

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.28  E-value=1.6e-10  Score=79.50  Aligned_cols=162  Identities=18%  Similarity=0.264  Sum_probs=97.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH-----------HH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------IK   87 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~   87 (196)
                      .+..+|++.|...|||||.+..|.+.+.-... . ......-......++.+..++.+....++..+           .+
T Consensus         3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~-~-~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~   80 (208)
T KOG3327|consen    3 IRGALIVLEGLDRSGKSTQCGKLVESLIPGLD-P-AELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS   80 (208)
T ss_pred             CCccEEeeeccccCCceeehhHHHHHHHhccC-h-HHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence            35678999999999999999999998842211 1 11222212245667777777776666655443           34


Q ss_pred             HHHHHHHhcCCCeEEEeccCCC-HH----------HHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHH
Q 029252           88 LLQKAMEESGNDKFLIDGFPRN-EE----------NRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETI  156 (196)
Q Consensus        88 ~~~~~l~~~~~~~~iidg~~~~-~~----------~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~  156 (196)
                      ++.+.+.  .+..+|+|.|... ..          ....... -...||.++||+++++.+.+| .++  |........+
T Consensus        81 ~i~e~l~--kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~-gL~KPDlvlfL~v~p~~~a~r-ggf--G~Erye~v~f  154 (208)
T KOG3327|consen   81 LIKEKLA--KGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDV-GLPKPDLVLFLDVSPEDAARR-GGF--GEERYETVAF  154 (208)
T ss_pred             HHHHHHh--cCCeEEEecceecchhhhhhcCCCcchhhCCcc-CCCCCCeEEEEeCCHHHHHHh-cCc--chhHHHHHHH
Confidence            4555454  3777999975432 11          1111222 567799999999999995444 444  3222223344


Q ss_pred             HHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          157 RKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      +++...+..   .+..  .....+.++|++.+.|+|.
T Consensus       155 qekv~~~~q---~l~r--~e~~~~~~vDAs~sve~V~  186 (208)
T KOG3327|consen  155 QEKVLVFFQ---KLLR--KEDLNWHVVDASKSVEKVH  186 (208)
T ss_pred             HHHHHHHHH---HHHh--ccCCCeEEEecCccHHHHH
Confidence            444333332   2211  1334799999999988764

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=99.28  E-value=1.3e-10  Score=84.02  Aligned_cols=153  Identities=18%  Similarity=0.276  Sum_probs=78.3

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHH---HHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE---VTIKLL   89 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~   89 (196)
                      ...+.+|+|+|.||.|||++|++|++.|+     ..+++.+++-|+......... .+......+......   ...+-+
T Consensus         9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~-ff~p~n~~~~~~R~~~a~~~l~dl   87 (222)
T PF01591_consen    9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAE-FFDPDNEEAKKLREQIAKEALEDL   87 (222)
T ss_dssp             ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GG-GGSTT-HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccc-cCCCCChHHHHHHHHHHHHHHHHH
Confidence            44678999999999999999999998774     468999998888755411100 000000000000001   112223


Q ss_pred             HHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEE--cCHHHHHHHHhhc-cCC-------CCCCcHHHHHHH
Q 029252           90 QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD--CSEEEMERRILNR-NQG-------REDDNVETIRKR  159 (196)
Q Consensus        90 ~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~--~~~~~~~~R~~~R-~~~-------r~~~~~~~~~~~  159 (196)
                      ...+.+..++..|+|+...+.+.+..+.+........++|++  |+++.+.++...+ ...       .++...+.+.+|
T Consensus        88 ~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~R  167 (222)
T PF01591_consen   88 IEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKR  167 (222)
T ss_dssp             HHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHH
T ss_pred             HHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHH
Confidence            334454568899999999999988877664111113456654  4554444444443 111       122334667789


Q ss_pred             HHHHHhcchhHH
Q 029252          160 FKVFLESSLPVV  171 (196)
Q Consensus       160 ~~~~~~~~~~~~  171 (196)
                      ++.|...+.|+-
T Consensus       168 I~~Ye~~YEpl~  179 (222)
T PF01591_consen  168 IEHYEKVYEPLD  179 (222)
T ss_dssp             HHHHHTT-----
T ss_pred             HHhhcccccccc
Confidence            999998888884

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.28  E-value=1.4e-10  Score=80.82  Aligned_cols=113  Identities=15%  Similarity=0.240  Sum_probs=67.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcC----Ccc---------hHHHHHHHHcCCCCCHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSG----SEN---------GTMIQNMIKEGKIVPSEVTI   86 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~~----~~~---------~~~~~~~~~~~~~~~~~~~~   86 (196)
                      .+|+|.|+|.|||||+|+.|.+.+.  +.+++.|++........    ..+         +..+...+        ..+.
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~   73 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLY--------AAMH   73 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHH--------HHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHH--------HHHH
Confidence            6899999999999999999999996  56888887776532221    000         01111100        1112


Q ss_pred             HHHHHHHHhcCCCeEEEeccCCCHHH-HHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           87 KLLQKAMEESGNDKFLIDGFPRNEEN-RAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        87 ~~~~~~l~~~~~~~~iidg~~~~~~~-~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ..+.....  .+..+|+|........ .+.+.++....+.+.|-+.||.+++.+|-..|
T Consensus        74 ~~iaa~a~--aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~R  130 (174)
T PF07931_consen   74 AAIAAMAR--AGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERAR  130 (174)
T ss_dssp             HHHHHHHH--TT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHH
T ss_pred             HHHHHHHh--CCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhc
Confidence            33333222  4888999986555543 45554434455667999999999999999999

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=99.27  E-value=1.4e-10  Score=85.15  Aligned_cols=136  Identities=13%  Similarity=0.134  Sum_probs=71.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCC-----cE-ecHHHHHHHHH--HcCCcchHHHHHHHHcCCCCCHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-----TH-LSAGDLLRAEI--KSGSENGTMIQNMIKEGKIVPSEVTIKLL   89 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~-----~~-~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (196)
                      ..++.++.|.|++||||||+++.|+..+..     .+ +..|++.....  ......     .................+
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~-----~~~~~~~~~d~~~~~~~l  104 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLR-----PRKGAPETFDVAGLAALL  104 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccc-----cccCCCCCCCHHHHHHHH
Confidence            356789999999999999999999988742     22 55555332110  000000     000000001111111111


Q ss_pred             HHHHHh------------------------cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc
Q 029252           90 QKAMEE------------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (196)
Q Consensus        90 ~~~l~~------------------------~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~  145 (196)
                      ......                        .....+|+||.+..... ..+.. ....+|.++|+++|.+++.+|+..|.
T Consensus       105 ~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~-~~~~~-l~~~~D~vi~v~~~~~~~~~R~~~R~  182 (229)
T PRK09270        105 RRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDE-EPWRR-LAGLFDFTIFLDAPAEVLRERLVARK  182 (229)
T ss_pred             HHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeecc-ccHHH-HHhhCCEEEEEECCHHHHHHHHHHHH
Confidence            111100                        02456778886543321 11121 22357899999999999999999981


Q ss_pred             CCCCCCcHHHHHHHHH
Q 029252          146 QGREDDNVETIRKRFK  161 (196)
Q Consensus       146 ~~r~~~~~~~~~~~~~  161 (196)
                      . ....+.+.+.+++.
T Consensus       183 ~-~~g~s~~~~~~~~~  197 (229)
T PRK09270        183 L-AGGLSPEAAEAFVL  197 (229)
T ss_pred             H-hcCCCHHHHHHHHH
Confidence            1 12234566666654

>PRK15453 phosphoribulokinase; Provisional

Probab=99.26  E-value=3.4e-11  Score=89.22  Aligned_cols=39  Identities=21%  Similarity=0.294  Sum_probs=31.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR   57 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~   57 (196)
                      .++.+|+|+|.|||||||+++.|++.++     ..+++.|++.+
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            3568999999999999999999998774     45677777664

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.25  E-value=4.5e-10  Score=79.71  Aligned_cols=113  Identities=16%  Similarity=0.176  Sum_probs=68.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchH-HHHHHHHcCCCCCHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQK   91 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   91 (196)
                      ..++.+++|.|+|||||||+++.|+..+.     ..+++.|+ +++.+..+..+.. .....+        ..... +..
T Consensus        15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~-~r~~l~~~~~~~~~~~~~~~--------~~~~~-~~~   84 (184)
T TIGR00455        15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN-VRHGLNKDLGFSEEDRKENI--------RRIGE-VAK   84 (184)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH-HHhhhccccCCCHHHHHHHH--------HHHHH-HHH
Confidence            35678999999999999999999998872     34566544 4433222111110 000000        00011 112


Q ss_pred             HHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHH
Q 029252           92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI  141 (196)
Q Consensus        92 ~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~  141 (196)
                      .+ ...+..+|+|........+..+.......+..++||++|.+++.+|.
T Consensus        85 ~~-~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~  133 (184)
T TIGR00455        85 LF-VRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRD  133 (184)
T ss_pred             HH-HcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhC
Confidence            22 22488899998655566666666532222456899999999999993

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.24  E-value=5.6e-10  Score=75.14  Aligned_cols=159  Identities=18%  Similarity=0.160  Sum_probs=97.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      ++.+.++.|+.||||||+...+...+  +..+++.|.+.... ....+....++..         ......+...+.  .
T Consensus         1 m~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i-~p~~p~~~~i~A~---------r~ai~~i~~~I~--~   68 (187)
T COG4185           1 MKRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI-SPDNPTSAAIQAA---------RVAIDRIARLID--L   68 (187)
T ss_pred             CceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc-CCCCchHHHHHHH---------HHHHHHHHHHHH--c
Confidence            46788999999999999987766555  35677886665554 3322221111110         111333443443  3


Q ss_pred             CCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHhcchhHHHHH
Q 029252           98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSLPVVQYY  174 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (196)
                      +.++..+.........+.+...  .++-..+.+++--+.+...+|++.| ..|.++.+++.++.|+.+..+    ++++|
T Consensus        69 ~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rsle----~l~~~  144 (187)
T COG4185          69 GRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRSLE----LLAQA  144 (187)
T ss_pred             CCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH----HHHHH
Confidence            7778877655444444444432  4444444444555678999999999 889999999999998776554    33444


Q ss_pred             Hhc-CcEEEEeCCCCceeEEe
Q 029252          175 EAK-GKVRKVIFCSPIFILVI  194 (196)
Q Consensus       175 ~~~-~~~~~id~~~~~e~v~~  194 (196)
                      -.. ....+.|++...-.++.
T Consensus       145 l~l~dr~~IydNS~~~~~lv~  165 (187)
T COG4185         145 LTLADRATIYDNSRLAPRLVA  165 (187)
T ss_pred             HhhcceeEEecCCCCCceEEE
Confidence            332 24667777765544443

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=99.24  E-value=2.9e-10  Score=95.18  Aligned_cols=164  Identities=20%  Similarity=0.240  Sum_probs=90.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH----HHcCCcch--HHHHHHHHc-------------CCCCC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENG--TMIQNMIKE-------------GKIVP   81 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~----~~~~~~~~--~~~~~~~~~-------------~~~~~   81 (196)
                      .+.|.|.||+||||||+++.|++++++.+++.+.++|..    ...+-...  ..+...+..             +..+.
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVT  521 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEch
Confidence            468999999999999999999999999999999999885    22222111  111111111             00010


Q ss_pred             H-----------------HHHHHHHHHHHHhc-CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhh
Q 029252           82 S-----------------EVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (196)
Q Consensus        82 ~-----------------~~~~~~~~~~l~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~  143 (196)
                      .                 ..+...+.....+. ...++|+||--..  .      .-.+..++-|||++++++..+|..+
T Consensus       522 ~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~~v~eGRdig--t------vv~p~a~~kifl~a~~~~Ra~Rr~~  593 (661)
T PRK11860        522 DAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPGLVADGRDMG--T------VIFPDAALKVFLTASAEARAERRYK  593 (661)
T ss_pred             hhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCCEEEECCCCc--c------EECCCCCeEEEEECChhHHHHHHHH
Confidence            0                 01111111111111 1446888872111  0      0233478899999999999999877


Q ss_pred             c--cCCCCCCcHHHHHHHHHH--HHhcchhHHHHHHhcCcEEEEeCC-CCceeEEe
Q 029252          144 R--NQGREDDNVETIRKRFKV--FLESSLPVVQYYEAKGKVRKVIFC-SPIFILVI  194 (196)
Q Consensus       144 R--~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~id~~-~~~e~v~~  194 (196)
                      .  ..+. ..+.+.+.+.+..  +.+..+. ...+....+-++||++ .++++++.
T Consensus       594 ~~~~~~~-~~~~~~~~~~~~~Rd~~d~~R~-~~pl~~~~da~~idts~~~~~~v~~  647 (661)
T PRK11860        594 QLISKGI-SANIADLLADLEARDARDTQRS-VAPLKPAQDALLLDNSDLTIEQAVA  647 (661)
T ss_pred             HHHhCCC-CCCHHHHHHHHHHHhHHhhcCC-CCCCccCCCEEEEECCCCCHHHHHH
Confidence            5  2233 2333333333311  1111111 1222444467788887 48877653

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=99.24  E-value=2.4e-11  Score=85.73  Aligned_cols=110  Identities=18%  Similarity=0.184  Sum_probs=64.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHH----
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM----   93 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----   93 (196)
                      +|+|.|+|||||||+|+.|++.+     +..+++.|++++.........+     .......+..+.+.+.+....    
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g-----~~d~~~~~d~~~l~~~l~~l~~~~~   75 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDG-----NYDFESILDLDLLNKNLHDLLNGKE   75 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCC-----CCCCCccccHHHHHHHHHHHHCCCe
Confidence            48999999999999999999987     3578899998874300000000     000000001112222222111    


Q ss_pred             -------------------HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHH-HHHHHhhc
Q 029252           94 -------------------EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE-MERRILNR  144 (196)
Q Consensus        94 -------------------~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~-~~~R~~~R  144 (196)
                                         ...+...+|+||.+....   .+.+    ..|+.||++++.+. ++.|...|
T Consensus        76 ~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~---~l~~----~~d~~I~vd~~~~~~rl~rri~R  139 (179)
T cd02028          76 VELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE---RLRS----LLDIRVAVSGGVHLNRLLRRVVR  139 (179)
T ss_pred             eecccceeECCccCCCceEEeCCCCEEEEecHHhcCH---hHHh----hcCEEEEEeCCccHHHHHHHHHH
Confidence                               111246788999655432   2222    26899999999998 77777766

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.23  E-value=6.2e-10  Score=78.35  Aligned_cols=109  Identities=19%  Similarity=0.246  Sum_probs=63.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchH-HHHHHHHcCCCCCHHHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKAM   93 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l   93 (196)
                      ++.+|+|.|+|||||||+++.|+..+.     ..+++.|.+ +.....+..+.. .......        . ...+...+
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r~~~~~--------~-~~~~a~~~   72 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDRDTNIR--------R-IGFVANLL   72 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhHHHHHH--------H-HHHHHHHH
Confidence            457999999999999999999999873     455676554 333222111110 0000000        0 11122222


Q ss_pred             HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHH
Q 029252           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI  141 (196)
Q Consensus        94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~  141 (196)
                      . ..+..+++++..........+.. .. ....++||++|.+++.+|.
T Consensus        73 ~-~~g~~vi~~~~~~~~~~~~~l~~-~~-~~~~~v~l~~~~e~~~~R~  117 (175)
T PRK00889         73 T-RHGVIVLVSAISPYRETREEVRA-NI-GNFLEVFVDAPLEVCEQRD  117 (175)
T ss_pred             H-hCCCEEEEecCCCCHHHHHHHHh-hc-CCeEEEEEcCCHHHHHHhC
Confidence            2 23667778865333444444444 22 2335999999999999994

>PHA03132 thymidine kinase; Provisional

Probab=99.21  E-value=8.9e-10  Score=89.37  Aligned_cols=28  Identities=25%  Similarity=0.323  Sum_probs=25.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~   48 (196)
                      ..+|+|.|+.||||||+++.|++.++..
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~lg~~  284 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGILGDN  284 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            5789999999999999999999998433

>PRK05439 pantothenate kinase; Provisional

Probab=99.21  E-value=3.5e-10  Score=85.69  Aligned_cols=126  Identities=16%  Similarity=0.236  Sum_probs=67.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHHHHHHH---------cCCcch---HHHHHH---HH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIK---------SGSENG---TMIQNM---IK   75 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d~~~~~~~---------~~~~~~---~~~~~~---~~   75 (196)
                      ...+.+|.|.|+|||||||+|+.|++.++       ..++++|+++...-.         .+.+..   ..+...   +.
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk  162 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVK  162 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHH
Confidence            45678999999999999999999998663       356778877643211         011100   011111   11


Q ss_pred             cCCC-CCHHHH----HHHHHHH-HHhcCCCeEEEeccCCC-HHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           76 EGKI-VPSEVT----IKLLQKA-MEESGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        76 ~~~~-~~~~~~----~~~~~~~-l~~~~~~~~iidg~~~~-~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .|.. +....+    .+..... ....+...+|+||.... ......+.. -....|+.||+++|.+++.+|+.+|
T Consensus       163 ~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~-l~d~~D~~IfVda~~~~~~~w~i~R  237 (311)
T PRK05439        163 SGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLF-VSDFFDFSIYVDADEDLIEKWYIER  237 (311)
T ss_pred             cCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchh-hHHhCCEEEEEECCHHHHHHHHHHH
Confidence            1211 100000    0000000 00012456788995432 221101111 1234789999999999999988887

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.20  E-value=1.8e-10  Score=86.40  Aligned_cols=134  Identities=16%  Similarity=0.197  Sum_probs=68.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHH---HH--HcCC---cc----hH--HHHHHHHcCCCCCHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRA---EI--KSGS---EN----GT--MIQNMIKEGKIVPSEVT   85 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~---~~--~~~~---~~----~~--~~~~~~~~~~~~~~~~~   85 (196)
                      +|.|.|++||||||+++.|+..++   ..++..|++...   ..  .+..   +.    ..  ..-..+..+..+....+
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y   80 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY   80 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence            478999999999999999998774   456777665421   00  0000   00    00  00111222222211111


Q ss_pred             HHHHHHHH---HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252           86 IKLLQKAM---EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV  162 (196)
Q Consensus        86 ~~~~~~~l---~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~  162 (196)
                      ........   ...+...+|+||.....+  ..+    ...+|+.||++++.++.++|..+|...+...+.+.+.+++..
T Consensus        81 ~~~~~~~~~~~~i~~~~ivIvEG~~~l~~--~~l----~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~  154 (273)
T cd02026          81 NHVTGLIDPPELIKPTKIVVIEGLHPLYD--ERV----RELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEA  154 (273)
T ss_pred             cccCCCcCCcEEcCCCCEEEEeeehhhCc--hhh----hhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            00000000   001246788898542111  111    224789999999999998887777211122345556665543

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.19  E-value=7.2e-10  Score=85.01  Aligned_cols=134  Identities=16%  Similarity=0.133  Sum_probs=75.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHc---CCcch---HHHHH--------H---HHcCCC
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKS---GSENG---TMIQN--------M---IKEGKI   79 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~------~~~~~~~d~~~~~~~~---~~~~~---~~~~~--------~---~~~~~~   79 (196)
                      +.+++|+|||||||+++.|++.+.      ..+++.||++......   +....   +.+++        .   +..|..
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~   80 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE   80 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            368999999999999999998775      3488899888321111   00000   11111        1   112222


Q ss_pred             CCH------------------------------HHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEE
Q 029252           80 VPS------------------------------EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFV  127 (196)
Q Consensus        80 ~~~------------------------------~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~  127 (196)
                      ...                              .....++...+.  ....+|+|+.+.....+..+..+  .......+
T Consensus        81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~Ls--rpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~  158 (340)
T TIGR03575        81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVS--RPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQ  158 (340)
T ss_pred             ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHh--CCCCceecCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence            111                              011111111111  24468899866666665555443  33334479


Q ss_pred             EEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 029252          128 LFFDCSEEEMERRILNRNQGREDDNVETIRKRFK  161 (196)
Q Consensus       128 i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~  161 (196)
                      ||+++|.+++.+|..+|  +. ..+.+.+.....
T Consensus       159 V~ld~ple~~l~RN~~R--~~-~v~devie~m~~  189 (340)
T TIGR03575       159 LFLDCPVESCLLRNKQR--PV-PLPDETIQLMGR  189 (340)
T ss_pred             EEEeCCHHHHHHHHhcC--CC-CCCHHHHHHHHH
Confidence            99999999999999998  32 334444444333

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.19  E-value=3.5e-10  Score=76.28  Aligned_cols=155  Identities=16%  Similarity=0.201  Sum_probs=91.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcc----hHHHHHHHHcCCC-CCHHHH------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSEN----GTMIQNMIKEGKI-VPSEVT------   85 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~------   85 (196)
                      +..+|++.||||+||-|+......++..   .+|.-.-+.|..-.+++..    ...|...-..|.+ +.|...      
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi   83 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI   83 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence            5789999999999999999999888842   2222112222211111110    1122222222211 122111      


Q ss_pred             HHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029252           86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE  165 (196)
Q Consensus        86 ~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~  165 (196)
                      -..+...+.  .+..+|+.|.-..+.+..     ..+.--.++++.++++++.+|+.+|  ||  ++.+++..|+.+-..
T Consensus        84 p~eId~wl~--~G~vvl~NgSRa~Lp~ar-----rry~~Llvv~ita~p~VLaqRL~~R--GR--Es~eeI~aRL~R~a~  152 (192)
T COG3709          84 PAEIDLWLA--AGDVVLVNGSRAVLPQAR-----RRYPQLLVVCITASPEVLAQRLAER--GR--ESREEILARLARAAR  152 (192)
T ss_pred             chhHHHHHh--CCCEEEEeccHhhhHHHH-----HhhhcceeEEEecCHHHHHHHHHHh--cc--CCHHHHHHHHHhhcc
Confidence            233444454  488888888644333322     2223346999999999999999999  55  567888888765432


Q ss_pred             cchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          166 SSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       166 ~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      ..       ...+++..||++.+++..
T Consensus       153 ~~-------~~~~dv~~idNsG~l~~a  172 (192)
T COG3709         153 YT-------AGPGDVTTIDNSGELEDA  172 (192)
T ss_pred             cc-------cCCCCeEEEcCCCcHHHH
Confidence            11       235589999999888753

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=99.18  E-value=2.1e-09  Score=80.95  Aligned_cols=97  Identities=24%  Similarity=0.304  Sum_probs=55.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh--cC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--SG   97 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~   97 (196)
                      +..+|+|+|++||||||+++.|. ..|+.+++.                           .+-.++.+++......  ..
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~---------------------------~~~~L~~~l~~~~~~~~~~~   56 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN---------------------------LPPSLLPKLVELLAQSGGIR   56 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC---------------------------cCHHHHHHHHHHHHhcCCCC
Confidence            34689999999999999999995 557655522                           1111112222221111  12


Q ss_pred             CCeEEEeccCCCH--HHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           98 NDKFLIDGFPRNE--ENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        98 ~~~~iidg~~~~~--~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .-.+++|-.....  +....+..+ .......+|||+++++++.+|+.++
T Consensus        57 ~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~  106 (288)
T PRK05416         57 KVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSET  106 (288)
T ss_pred             CeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhc
Confidence            3356677532211  122222222 1222335899999999999999754

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.16  E-value=1.2e-09  Score=78.50  Aligned_cols=112  Identities=18%  Similarity=0.117  Sum_probs=61.9

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHH--H
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL--L   89 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   89 (196)
                      .+.++.+|+|+|++||||||+++.|+..+     +..+++.|++.... .....+.          .......+..+  +
T Consensus        20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~-~~~~~~~----------~~~~~~~~~~l~~~   88 (198)
T PRK03846         20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGL-CSDLGFS----------DADRKENIRRVGEV   88 (198)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhh-hhcCCcC----------cccHHHHHHHHHHH
Confidence            34677899999999999999999999987     24556554443222 1111000          00001111111  1


Q ss_pred             HHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHH
Q 029252           90 QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR  140 (196)
Q Consensus        90 ~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R  140 (196)
                      ...+.. .+..+|.+........+..+.++......++|||++|.+++.+|
T Consensus        89 a~~~~~-~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R  138 (198)
T PRK03846         89 AKLMVD-AGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR  138 (198)
T ss_pred             HHHHhh-CCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence            222221 25555543322234566666653222223479999999999999

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=99.14  E-value=1.1e-09  Score=82.43  Aligned_cols=126  Identities=17%  Similarity=0.262  Sum_probs=66.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHHHHHH--Hc-------CCcch---HHHHH---HHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEI--KS-------GSENG---TMIQN---MIK   75 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d~~~~~~--~~-------~~~~~---~~~~~---~~~   75 (196)
                      ...|.+|.|.|++||||||+++.|+..+.       ..++++|++.....  ..       +.+..   ..+..   .+.
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk  138 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK  138 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence            35678999999999999999998876653       34566666553211  10       11110   11111   112


Q ss_pred             cCCC-CCHHHH----HHHHHHH-HHhcCCCeEEEeccCCCHHHH-----HHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           76 EGKI-VPSEVT----IKLLQKA-MEESGNDKFLIDGFPRNEENR-----AAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        76 ~~~~-~~~~~~----~~~~~~~-l~~~~~~~~iidg~~~~~~~~-----~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .|.. +....+    .+..... ....+...+|+||.+......     ..+.. ....+|+.||+++|.+++.+|..+|
T Consensus       139 ~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~-~~d~~D~~IyvDa~~d~~~~w~i~R  217 (290)
T TIGR00554       139 SGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVF-VSDFVDFSIYVDAEEDLLQTWYINR  217 (290)
T ss_pred             CCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHH-HHHhCCEEEEEECCHHHHHHHHHHH
Confidence            2221 111111    0111100 000135677889954321110     01111 1235889999999999999998888

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=99.10  E-value=1e-08  Score=71.28  Aligned_cols=66  Identities=11%  Similarity=0.098  Sum_probs=41.3

Q ss_pred             cCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHH---HHHHHHHHHHhcchhHHHHHH--hcCcEEEEeCCCCce
Q 029252          120 TKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVE---TIRKRFKVFLESSLPVVQYYE--AKGKVRKVIFCSPIF  190 (196)
Q Consensus       120 ~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~id~~~~~e  190 (196)
                      ....+|.+|||.++|++|.+|+..| +......+.+   .+++..+.|.-     ...+.  ...++.++|++.+.+
T Consensus       150 ~~v~~dgiIYLrasPetc~~Ri~~R~R~EE~gipL~YLe~LH~~HE~WLi-----~~~f~~lq~vpvLVLDad~n~d  221 (244)
T KOG4235|consen  150 MDVSLDGIIYLRASPETCYKRIYLRAREEEKGIPLKYLEALHELHESWLI-----KLHFPNLQAVPVLVLDADHNMD  221 (244)
T ss_pred             cccccceEEEeecChHHHHHHHHHHhhhhhcCCcHHHHHHHHHHHHHHHH-----HHhhhHhhcCCeEEEecccchh
Confidence            3467899999999999999999999 2222233333   33333333321     11122  344799999887655

>PLN02772 guanylate kinase

Probab=99.08  E-value=2e-09  Score=83.44  Aligned_cols=136  Identities=22%  Similarity=0.373  Sum_probs=83.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHc---CC----cchHHHHHHHHcCCCCCHH--------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GS----ENGTMIQNMIKEGKIVPSE--------   83 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~--------   83 (196)
                      ..+.++|.||+|||||||++.|.+.+.. ..+......|.....   +.    -..+.+..++..+.++.+.        
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG  213 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG  213 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence            4468999999999999999999887632 222333333332111   00    0124455565555554332        


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 029252           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF  163 (196)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~  163 (196)
                      +....+...+.  .++.+|+|   ...+....+.. ....+..++++..+.+++.+|+..|    ..++.+.+++|+..+
T Consensus       214 Tsk~~V~~vl~--~Gk~vILd---LD~qGar~Lr~-~~l~~v~IFI~PPSlEeLe~RL~~R----GteseE~I~kRL~~A  283 (398)
T PLN02772        214 TSIEAVEVVTD--SGKRCILD---IDVQGARSVRA-SSLEAIFIFICPPSMEELEKRLRAR----GTETEEQIQKRLRNA  283 (398)
T ss_pred             ccHHHHHHHHH--hCCcEEEe---CCHHHHHHHHH-hcCCeEEEEEeCCCHHHHHHHHHhc----CCCCHHHHHHHHHHH
Confidence            22555666655  47778888   44455555554 3334434555556689999999988    334667899999877


Q ss_pred             Hh
Q 029252          164 LE  165 (196)
Q Consensus       164 ~~  165 (196)
                      ..
T Consensus       284 ~~  285 (398)
T PLN02772        284 EA  285 (398)
T ss_pred             HH
Confidence            43

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=99.08  E-value=7e-09  Score=76.97  Aligned_cols=95  Identities=25%  Similarity=0.372  Sum_probs=57.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---CC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES---GN   98 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~   98 (196)
                      .+|+|+|.|||||||.++.| +.+|+.+++                           .+|-.++.++++......   ..
T Consensus         2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvD---------------------------NlP~~Ll~~l~~~~~~~~~~~~~   53 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRAL-EDLGYYCVD---------------------------NLPPSLLPQLIELLAQSNSKIEK   53 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHH-HhcCeeEEc---------------------------CCcHHHHHHHHHHHHhcCCCCce
Confidence            47899999999999999988 788887772                           233333344443322111   13


Q ss_pred             CeEEEeccCCC--HHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           99 DKFLIDGFPRN--EENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        99 ~~~iidg~~~~--~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      -.+++|--...  .+....+.++ .....-.++||+++++++.+|..+-
T Consensus        54 ~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eT  102 (284)
T PF03668_consen   54 VAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSET  102 (284)
T ss_pred             EEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhc
Confidence            34567742111  1111222222 2222334999999999999999764

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.07  E-value=1e-09  Score=92.74  Aligned_cols=37  Identities=30%  Similarity=0.533  Sum_probs=34.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~   59 (196)
                      .|.|.|||||||||+|+.|++++++.+++.+.+++..
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~   39 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC   39 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence            6899999999999999999999999999988888774

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.07  E-value=1.4e-09  Score=80.10  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR   57 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~   57 (196)
                      +|.|+|.|||||||+++.+.+.++     ..+++.|++.+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            488999999999999999998773     45677777665

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=99.07  E-value=8.1e-10  Score=89.40  Aligned_cols=145  Identities=14%  Similarity=0.154  Sum_probs=74.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHH--HcCCcch-----HHHH---HHHHcCCCCCHHHHH-
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEI--KSGSENG-----TMIQ---NMIKEGKIVPSEVTI-   86 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~--~~~~~~~-----~~~~---~~~~~~~~~~~~~~~-   86 (196)
                      ..+.+|.|.|++||||||+++.|+..+. ...+.+|++.....  ..+....     ..+.   ..+..+..+....+- 
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf  142 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDF  142 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCcccc
Confidence            3468999999999999999999998874 45677766532110  0000000     0000   112222222111110 


Q ss_pred             ---HHHHH-HHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc---cCCCCCCcHHHHHHH
Q 029252           87 ---KLLQK-AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR---NQGREDDNVETIRKR  159 (196)
Q Consensus        87 ---~~~~~-~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R---~~~r~~~~~~~~~~~  159 (196)
                         ..... .+...+...+|+||.+.....   +.    ...|+.||++++.+.+..|...|   ..|+   +.+.+.++
T Consensus       143 ~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~---Lr----~LlDlkIFVDtdvDirL~RRI~RD~~eRGr---s~EsVi~q  212 (656)
T PLN02318        143 KSSSRVGYRTLEVPSSRIVIIEGIYALSEK---LR----PLLDLRVSVTGGVHFDLVKRVLRDIQRAGQ---EPEEIIHQ  212 (656)
T ss_pred             ccCcccCCceeecCCCcEEEEechhhccHh---HH----hhCCEEEEEcCCccHHHHHHHHHHHHHhCC---CHHHHHHH
Confidence               00000 011113567889997665322   22    24689999998866655555555   3344   23333333


Q ss_pred             HHHHHhcchhHHHHHHh
Q 029252          160 FKVFLESSLPVVQYYEA  176 (196)
Q Consensus       160 ~~~~~~~~~~~~~~~~~  176 (196)
                         +.....|....|..
T Consensus       213 ---~~~~VkP~y~~FIe  226 (656)
T PLN02318        213 ---ISETVYPMYKAFIE  226 (656)
T ss_pred             ---HHHhhcchHHHHhC
Confidence               44444455555544

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.07  E-value=2.2e-09  Score=88.07  Aligned_cols=111  Identities=15%  Similarity=0.147  Sum_probs=65.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCC------cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHH---HH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY------THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK---LL   89 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~   89 (196)
                      +.+.+|+|+|+|||||||+++.|+++++.      .+++.| .+++.+.+...+...-..           ....   .+
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er~-----------~~~~~l~~~  457 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDRD-----------LNILRIGFV  457 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHHH-----------HHHHHHHHH
Confidence            45679999999999999999999999985      667665 445543322212111111           1111   11


Q ss_pred             HHHHHhcCCCeEEEeccCCCHHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHh
Q 029252           90 QKAMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRIL  142 (196)
Q Consensus        90 ~~~l~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~  142 (196)
                      .+.+. ..+.++|++........+..+.++ ......++|||++|.+++.+|..
T Consensus       458 a~~v~-~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~r  510 (568)
T PRK05537        458 ASEIT-KNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDR  510 (568)
T ss_pred             HHHHH-hCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcc
Confidence            22122 137788888643333333333332 11122358999999999999963

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=99.06  E-value=1.8e-08  Score=72.97  Aligned_cols=122  Identities=16%  Similarity=0.269  Sum_probs=74.3

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCc------chH-HHHHHHHcCCCCCHH-H-----
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSE------NGT-MIQNMIKEGKIVPSE-V-----   84 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~-~-----   84 (196)
                      ...|.+|+|.|+||.||||+|..||.++|..++-..|.+|+.+++--.      ... .+..+...+.....+ +     
T Consensus        86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~  165 (299)
T COG2074          86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFE  165 (299)
T ss_pred             cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHH
Confidence            345789999999999999999999999998877777888887666111      111 111111111111111 1     


Q ss_pred             ---------HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEE-EEcCHHHHHHHHhhc
Q 029252           85 ---------TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF-FDCSEEEMERRILNR  144 (196)
Q Consensus        85 ---------~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~-l~~~~~~~~~R~~~R  144 (196)
                               +...+++++.  ++..+||+|.+..+.....-.  . ....+.++ .-.+++....|+-.|
T Consensus       166 dqa~~V~~GI~~VI~RAi~--eG~~lIIEGvHlVPg~i~~~~--~-~~n~~~~~l~i~dee~Hr~RF~~R  230 (299)
T COG2074         166 DQASAVMVGIEAVIERAIE--EGEDLIIEGVHLVPGLIKEEA--L-GNNVFMFMLYIADEELHRERFYDR  230 (299)
T ss_pred             HHhHHHHHHHHHHHHHHHh--cCcceEEEeeeeccccccHhh--h-ccceEEEEEEeCCHHHHHHHHHHH
Confidence                     1344555555  588899999665554333211  1 12234444 456778888999988

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=99.05  E-value=1.8e-09  Score=75.35  Aligned_cols=115  Identities=18%  Similarity=0.205  Sum_probs=71.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHcCC--c---------------chHHHHHHHHcCCCCCH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGS--E---------------NGTMIQNMIKEGKIVPS   82 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~~~~~--~---------------~~~~~~~~~~~~~~~~~   82 (196)
                      ..+|.|.|.+.|||||||+.|.+.|+ ...|+-||++........  .               +.+.+...+......+.
T Consensus         4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~~   83 (225)
T KOG3308|consen    4 TLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAPE   83 (225)
T ss_pred             EEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccch
Confidence            36789999999999999999999884 778888888765433210  0               11222233333222221


Q ss_pred             HHHHHHHHH-----H-----HHhcCCCeEEEeccCCC--HHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           83 EVTIKLLQK-----A-----MEESGNDKFLIDGFPRN--EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        83 ~~~~~~~~~-----~-----l~~~~~~~~iidg~~~~--~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                       ....++..     .     ....+.+.+|+||+...  .....        ..+..+++..|-++|++|...|
T Consensus        84 -ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~--------~~d~~im~~~~y~~~krRr~~R  148 (225)
T KOG3308|consen   84 -AREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVD--------LFDRIIMLTLDYETCKRRREAR  148 (225)
T ss_pred             -HhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhh--------hhhhheeeeccHHHHHHhhccc
Confidence             11111111     1     11112667999996532  22322        3556999999999999999999

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=99.04  E-value=7.3e-09  Score=88.21  Aligned_cols=40  Identities=28%  Similarity=0.497  Sum_probs=37.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~   59 (196)
                      ...+|.|.|||||||||+|+.||+++++.+++.+.++|..
T Consensus        33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~   72 (863)
T PRK12269         33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF   72 (863)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence            3468999999999999999999999999999999999975

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.02  E-value=6.7e-09  Score=86.82  Aligned_cols=112  Identities=20%  Similarity=0.176  Sum_probs=68.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHH--HH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL--LQ   90 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   90 (196)
                      ..++.+|+++|.|||||||+|+.|+++++     ..+++.|+ +++.+..+..+...-.          ...+..+  +.
T Consensus       457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~~~~~~~~r----------~~~~~~l~~~a  525 (632)
T PRK05506        457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRDLGFSDADR----------VENIRRVAEVA  525 (632)
T ss_pred             CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCCCCCCHHHH----------HHHHHHHHHHH
Confidence            34689999999999999999999999973     45666655 4443322111111000          0111111  11


Q ss_pred             HHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHH
Q 029252           91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI  141 (196)
Q Consensus        91 ~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~  141 (196)
                      ..+. ..+..+|+|........++.+.+........++||++|.+++.+|.
T Consensus       526 ~~~~-~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~  575 (632)
T PRK05506        526 RLMA-DAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD  575 (632)
T ss_pred             HHHH-hCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC
Confidence            1111 2477888887544555666655522222447999999999999994

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=99.01  E-value=1.6e-09  Score=64.24  Aligned_cols=23  Identities=35%  Similarity=0.723  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +|++.|+|||||||+++.|++.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999885

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.99  E-value=2.3e-09  Score=76.03  Aligned_cols=133  Identities=21%  Similarity=0.348  Sum_probs=76.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHc---CCc----chHHHHHHHHcCCCCCHH--------H
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE--------V   84 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~--------~   84 (196)
                      ++.|+|+||+||||||+++.|.+.++. .........|..-.+   +..    ..+.+..+...+.++...        +
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt   81 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT   81 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence            578999999999999999999998752 111111112221110   111    123444444444433211        1


Q ss_pred             HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcC-HHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 029252           85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKVF  163 (196)
Q Consensus        85 ~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~  163 (196)
                      ....+...+.  .++..|+|..   .+....+.. ....| .+||+.++ .+.+.+|+..|    ..+..+.+.+|+...
T Consensus        82 ~~~~i~~~~~--~gk~~il~~~---~~g~~~L~~-~~~~~-~~IfI~~~s~~~l~~~l~~r----~~~~~~~i~~r~~~~  150 (183)
T PF00625_consen   82 SKSAIDKVLE--EGKHCILDVD---PEGVKQLKK-AGFNP-IVIFIKPPSPEVLKRRLRRR----GDESEEEIEERLERA  150 (183)
T ss_dssp             EHHHHHHHHH--TTTEEEEEET---HHHHHHHHH-CTTTE-EEEEEEESSHHHHHHHHHTT----THCHHHHHHHHHHHH
T ss_pred             ccchhhHhhh--cCCcEEEEcc---HHHHHHHHh-cccCc-eEEEEEccchHHHHHHHhcc----ccccHHHHHHHHHHH
Confidence            2455666665  4777888843   455555665 54444 57777655 67788887766    445566777777665


Q ss_pred             H
Q 029252          164 L  164 (196)
Q Consensus       164 ~  164 (196)
                      .
T Consensus       151 ~  151 (183)
T PF00625_consen  151 E  151 (183)
T ss_dssp             H
T ss_pred             H
Confidence            5

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PHA00729 NTP-binding motif containing protein

Probab=98.91  E-value=5e-08  Score=70.56  Aligned_cols=111  Identities=15%  Similarity=0.125  Sum_probs=61.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      ....|+|+|+||+||||+|..|+++++.  ..++.++.....  ..            ....+..+.....+........
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~--~~------------~~~fid~~~Ll~~L~~a~~~~~   81 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQY--VQ------------NSYFFELPDALEKIQDAIDNDY   81 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhc--CC------------cEEEEEHHHHHHHHHHHHhcCC
Confidence            3357999999999999999999998752  222222111111  00            0011222222333433332211


Q ss_pred             -CCeEEEeccCCCHHH--HH--------HHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           98 -NDKFLIDGFPRNEEN--RA--------AFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        98 -~~~~iidg~~~~~~~--~~--------~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                       ...+|+|++......  ..        .+..+....++.++++.++++.+.+++.+|
T Consensus        82 ~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R  139 (226)
T PHA00729         82 RIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK  139 (226)
T ss_pred             CCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence             245689973221111  00        011112225778999999999999999998

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=98.81  E-value=1.9e-08  Score=71.54  Aligned_cols=132  Identities=15%  Similarity=0.147  Sum_probs=70.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (196)
                      ++|+++|.|+|||||.|+.|.+.|.     ..++-.+|.. -.+..++.++....+..-.      ..+...+.+.+.  
T Consensus         2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des-lg~~~ns~y~~s~~EK~lR------g~L~S~v~R~Ls--   72 (281)
T KOG3062|consen    2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES-LGIEKNSNYGDSQAEKALR------GKLRSAVDRSLS--   72 (281)
T ss_pred             CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh-cCCCCcccccccHHHHHHH------HHHHHHHHhhcc--
Confidence            4799999999999999999998873     2333333322 1111122222211111111      112334444443  


Q ss_pred             CCCeEEEeccCCCHHHHHH---HHhhcCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHH
Q 029252           97 GNDKFLIDGFPRNEENRAA---FEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVF  163 (196)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~---~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~~~~~~~~~~  163 (196)
                      .+..||+|.....+-.+..   ..+ .....-.+|+..+|.+.|++...+| ..+.+..+.+.+..-+.+|
T Consensus        73 k~~iVI~DslNyIKGfRYeLyC~ak-~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~e~le~L~~Ry  142 (281)
T KOG3062|consen   73 KGDIVIVDSLNYIKGFRYELYCEAK-AARTTYCVVHTAVPQELCREWNSEREDPGEDGYDDELLEALVQRY  142 (281)
T ss_pred             cCcEEEEecccccccceeeeeeehh-ccceeEEEEEecCCHHHHHHhcccCCCCCCCCCCHHHHHHHHHHh
Confidence            3888999964332222222   111 2222335899999999999999888 2222333334444444444

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=3.1e-08  Score=79.93  Aligned_cols=128  Identities=16%  Similarity=0.249  Sum_probs=75.1

Q ss_pred             ccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHH--HHHHHHHHcCC--cchHHHHHHHHcCC------------
Q 029252           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG--DLLRAEIKSGS--ENGTMIQNMIKEGK------------   78 (196)
Q Consensus        15 ~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~--d~~~~~~~~~~--~~~~~~~~~~~~~~------------   78 (196)
                      .+...+|.-++++||||||||.+|+.+|.+++.++++..  .++... .+.+  ...+.|.+......            
T Consensus       217 ~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv-SGESEkkiRelF~~A~~~aPcivFiDeIDAI~  295 (802)
T KOG0733|consen  217 SLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV-SGESEKKIRELFDQAKSNAPCIVFIDEIDAIT  295 (802)
T ss_pred             hcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc-CcccHHHHHHHHHHHhccCCeEEEeecccccc
Confidence            344556788999999999999999999999998887632  111111 1100  11122222111100            


Q ss_pred             ----CCCHHHHHHHHHHHH---Hhc-----CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           79 ----IVPSEVTIKLLQKAM---EES-----GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        79 ----~~~~~~~~~~~~~~l---~~~-----~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                          ....+.-..++...+   ...     .+..|++-|....++..+--.+ +...+|.-|+|.+|.++.+.++..-
T Consensus       296 pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLR-RaGRFdrEI~l~vP~e~aR~~IL~~  372 (802)
T KOG0733|consen  296 PKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALR-RAGRFDREICLGVPSETAREEILRI  372 (802)
T ss_pred             cchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHh-ccccccceeeecCCchHHHHHHHHH
Confidence                001112222222222   111     1566777775555555444444 7888999999999999999998875

>PLN02165 adenylate isopentenyltransferase

Probab=98.79  E-value=5.3e-08  Score=74.27  Aligned_cols=37  Identities=24%  Similarity=0.471  Sum_probs=33.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~   55 (196)
                      .++.+|+|.||+||||||++..|++.++..+++.|.+
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            3457899999999999999999999999999998776

>PHA03136 thymidine kinase; Provisional

Probab=98.76  E-value=3.2e-07  Score=70.73  Aligned_cols=30  Identities=27%  Similarity=0.418  Sum_probs=25.1

Q ss_pred             cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCC
Q 029252          120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (196)
Q Consensus       120 ~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~  151 (196)
                      ....+|.+|||+.+++++.+|+.+|  +|+.+
T Consensus       188 ~~p~pD~IIyL~l~~e~~~~RI~kR--gR~~E  217 (378)
T PHA03136        188 DEPHGGNIVIMDLDECEHAERIIAR--GRPGE  217 (378)
T ss_pred             CCCCCCEEEEEeCCHHHHHHHHHHc--CCCcc
Confidence            3456899999999999999999999  55443

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=98.76  E-value=3.6e-07  Score=62.35  Aligned_cols=125  Identities=15%  Similarity=0.272  Sum_probs=72.4

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 029252           24 VFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  102 (196)
                      ++=.+.+||||||++..|++-|+ +-++..|++..+                      ....+...+.+.+.+.....||
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k----------------------~~~~f~~~~l~~L~~~~~~vVi   59 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGK----------------------RKPKFIKAVLELLAKDTHPVVI   59 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCC----------------------CHHHHHHHHHHHHhhCCCCEEE
Confidence            45578999999999999999999 999888775322                      1111233333445444688899


Q ss_pred             EeccCCCHHHHHHHHhh-cCCCC-------cE-EEEEE----cCH----HHHHHHHhhccC----CCCCC-cHHHHHHHH
Q 029252          103 IDGFPRNEENRAAFEAV-TKIEP-------EF-VLFFD----CSE----EEMERRILNRNQ----GREDD-NVETIRKRF  160 (196)
Q Consensus       103 idg~~~~~~~~~~~~~~-~~~~~-------~~-~i~l~----~~~----~~~~~R~~~R~~----~r~~~-~~~~~~~~~  160 (196)
                      .|.......+++.+.+. ....+       .+ +|.|.    .+.    +.+.+|+.+|..    -+.+. ....+..-|
T Consensus        60 aDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im  139 (168)
T PF08303_consen   60 ADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIM  139 (168)
T ss_pred             EeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHH
Confidence            99887777666655432 11001       11 33332    122    567788888811    11222 334455555


Q ss_pred             HHHHhcchhH
Q 029252          161 KVFLESSLPV  170 (196)
Q Consensus       161 ~~~~~~~~~~  170 (196)
                      ..|.....|+
T Consensus       140 ~gFi~rfep~  149 (168)
T PF08303_consen  140 EGFIKRFEPV  149 (168)
T ss_pred             HHHHHhcCCC
Confidence            5665544444

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=98.66  E-value=5.8e-07  Score=65.52  Aligned_cols=93  Identities=25%  Similarity=0.360  Sum_probs=55.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH-hc--CC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-ES--GN   98 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~--~~   98 (196)
                      .+|+|+|.||||||+.++.| +.+|+.+++                           .+|-.++.+++.-... +.  ..
T Consensus         2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvD---------------------------NLPp~Llp~~~~~~~~~~~~~~k   53 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVD---------------------------NLPPQLLPKLADLMLTLESRITK   53 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHH-HhcCeeeec---------------------------CCCHHHHHHHHHHHhhcccCCce
Confidence            47999999999999999988 778876662                           2333333333332111 11  13


Q ss_pred             CeEEEeccC----CCH-HHHHHHHhhcCCCCc-EEEEEEcCHHHHHHHHhhc
Q 029252           99 DKFLIDGFP----RNE-ENRAAFEAVTKIEPE-FVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        99 ~~~iidg~~----~~~-~~~~~~~~~~~~~~~-~~i~l~~~~~~~~~R~~~R  144 (196)
                      -.+++|--.    ... +....+.+ .. ..+ .++||+++.+++.+|..+-
T Consensus        54 vAv~iDiRs~~~~~~l~~~l~~l~~-~~-~~~~~iLFLeA~~~~Lv~RY~et  103 (286)
T COG1660          54 VAVVIDVRSREFFGDLEEVLDELKD-NG-DIDPRVLFLEADDETLVRRYSET  103 (286)
T ss_pred             EEEEEecccchhHHHHHHHHHHHHh-cC-CCCceEEEEECchhHHHHHHhhh
Confidence            345677311    111 11222222 22 222 4999999999999999764

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=98.66  E-value=7.8e-08  Score=70.73  Aligned_cols=126  Identities=17%  Similarity=0.268  Sum_probs=69.2

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHH------HHH---HHHcCCcchH---H---HHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDL------LRA---EIKSGSENGT---M---IQNMI   74 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d~------~~~---~~~~~~~~~~---~---~~~~~   74 (196)
                      ....|.+|.+.|++|+||||+|+.|+..+.       ...+.+|-+      +.+   +-.+|.+..-   .   +-..+
T Consensus        78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~v  157 (283)
T COG1072          78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDV  157 (283)
T ss_pred             CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHH
Confidence            355678999999999999999999988663       122222211      111   0011222211   1   11122


Q ss_pred             HcCCC-CCHHHHHHHHHHHH----H-hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           75 KEGKI-VPSEVTIKLLQKAM----E-ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        75 ~~~~~-~~~~~~~~~~~~~l----~-~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      +.+.. +....+-..+...+    . ....+.+|++|.+...+.. -+.. ...-+|+.||+|++.+.+.+|..+|
T Consensus       158 K~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~-p~~~-~sdffDfSIyvDa~~~~le~wyi~R  231 (283)
T COG1072         158 KAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGE-PWLF-LSDFFDFSIYVDADEELLEERYIER  231 (283)
T ss_pred             hcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCC-cccc-ccccceEEEEecCCHHHHHHHHHHH
Confidence            22222 22222222221111    1 1125678899966444332 1111 3445789999999999999999999

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.61  E-value=1.8e-07  Score=63.13  Aligned_cols=108  Identities=13%  Similarity=0.227  Sum_probs=55.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCc-EecHHHHHHHHHHc---CCc----chHHHHHHHHcCCCCCH--------HHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYT-HLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPS--------EVTI   86 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~-~~~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~--------~~~~   86 (196)
                      +|+|.||+||||||+++.|++.+... ........+.....   +..    ....+......+.++..        ....
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~   80 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK   80 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence            37899999999999999999876421 11111111111000   000    11233333443332211        1224


Q ss_pred             HHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHH
Q 029252           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (196)
Q Consensus        87 ~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~  137 (196)
                      ..+...+.  .++.+|+|..   .+....+.. ....+ .+||+.+|+.++
T Consensus        81 ~~i~~~~~--~g~~~il~~~---~~~~~~l~~-~~~~~-~~I~i~~~~~~~  124 (137)
T cd00071          81 AAVEEALA--EGKIVILEID---VQGARQVKK-SYPDA-VSIFILPPDYVI  124 (137)
T ss_pred             HHHHHHHh--CCCeEEEEec---HHHHHHHHH-cCCCe-EEEEEECCCeEE
Confidence            44555554  4788888853   333444444 33322 588888884433

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK06761 hypothetical protein; Provisional

Probab=98.54  E-value=8.4e-07  Score=66.59  Aligned_cols=28  Identities=21%  Similarity=0.370  Sum_probs=25.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      ++++|+|.|+|||||||+++.|++++..
T Consensus         2 m~~lIvI~G~~GsGKTTla~~L~~~L~~   29 (282)
T PRK06761          2 MTKLIIIEGLPGFGKSTTAKMLNDILSQ   29 (282)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            3578999999999999999999999864

>PF13173 AAA_14: AAA domain

Probab=98.51  E-value=1.6e-06  Score=57.85  Aligned_cols=99  Identities=13%  Similarity=0.246  Sum_probs=59.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (196)
                      ..+++|.|+.||||||+++.+++.+.    ..+++.++........                  .+  ..+.+.+... .
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~------------------~~--~~~~~~~~~~-~   60 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD------------------PD--LLEYFLELIK-P   60 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh------------------hh--hHHHHHHhhc-c
Confidence            46799999999999999999998864    6677766544322100                  00  1222222211 1


Q ss_pred             CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHH
Q 029252           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR  140 (196)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R  140 (196)
                      ....+++|......+....+..+....++.-+++..+......+
T Consensus        61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~  104 (128)
T PF13173_consen   61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSK  104 (128)
T ss_pred             CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhh
Confidence            35668899766555544444443222256677777776665543

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=98.49  E-value=1.1e-06  Score=58.87  Aligned_cols=118  Identities=20%  Similarity=0.255  Sum_probs=60.6

Q ss_pred             cccCCCCCcEEEEEcCCCCChHHHHHHHHHHh---C-CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHH
Q 029252           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---G-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL   89 (196)
Q Consensus        14 ~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~---~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (196)
                      +.+..++..+|+|+|.+||||||+|-.|.+.+   | ..++-.+|=+|.-+..  ..+...+...   ..+   --...+
T Consensus        24 q~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~--DL~F~a~dR~---ENI---RRigeV   95 (207)
T KOG0635|consen   24 QKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK--DLGFKAEDRN---ENI---RRIGEV   95 (207)
T ss_pred             HHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc--ccCcchhhhh---hhH---HHHHHH
Confidence            44556678899999999999999999998877   2 3344333434432222  1111111100   000   001222


Q ss_pred             HHHHHhcCCCeEEEeccCCC-HHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHH
Q 029252           90 QKAMEESGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRI  141 (196)
Q Consensus        90 ~~~l~~~~~~~~iidg~~~~-~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~  141 (196)
                      .....  +...+.|-.+-.. ...++...++.......-||+++|.++|.+|-
T Consensus        96 aKLFA--Dag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RD  146 (207)
T KOG0635|consen   96 AKLFA--DAGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARD  146 (207)
T ss_pred             HHHHh--ccceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccC
Confidence            22222  2222333332111 12333444432223446899999999998874

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=8.4e-06  Score=66.69  Aligned_cols=128  Identities=16%  Similarity=0.239  Sum_probs=69.4

Q ss_pred             cccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHHHHHHHcCC-cchHHHHHHHH---------------
Q 029252           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEIKSGS-ENGTMIQNMIK---------------   75 (196)
Q Consensus        14 ~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~--~~d~~~~~~~~~~-~~~~~~~~~~~---------------   75 (196)
                      ..+.-.+|+-|++.|||||||||+|+.+|+.-+..+++  ..+++.+++...+ ..+..|..+-.               
T Consensus       461 ~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~  540 (693)
T KOG0730|consen  461 ARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALA  540 (693)
T ss_pred             HHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHh
Confidence            34455677899999999999999999999988765554  3444444432221 11112221111               


Q ss_pred             --cCCCCCHHHHHHHHHHHHHhcC----CCeEEEeccCCCHHHHHH-HHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           76 --EGKIVPSEVTIKLLQKAMEESG----NDKFLIDGFPRNEENRAA-FEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        76 --~~~~~~~~~~~~~~~~~l~~~~----~~~~iidg~~~~~~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                        ++.... ......+...+.+-+    .+.|++-+..+.++..+. +.  +-...|.+||+..|+......+.+-
T Consensus       541 ~~R~g~~~-~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALl--RPGRlD~iiyVplPD~~aR~~Ilk~  613 (693)
T KOG0730|consen  541 GSRGGSSS-GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALL--RPGRLDRIIYVPLPDLEARLEILKQ  613 (693)
T ss_pred             hccCCCcc-chHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHc--CCcccceeEeecCccHHHHHHHHHH
Confidence              110000 111222222222222    333444433333333222 22  4556899999999999888888764

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=98.47  E-value=1e-06  Score=63.29  Aligned_cols=125  Identities=14%  Similarity=0.131  Sum_probs=68.4

Q ss_pred             ccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCc-------------EecHHHH--HHHHHHcCCcchHHHHHHHHcC-C
Q 029252           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT-------------HLSAGDL--LRAEIKSGSENGTMIQNMIKEG-K   78 (196)
Q Consensus        15 ~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~-------------~~~~~d~--~~~~~~~~~~~~~~~~~~~~~~-~   78 (196)
                      .+.+....++.+.|+||+||||++..+.++++..             ++.+|-+  .+.....   +..-....-.+| .
T Consensus       113 ~L~~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~---f~dP~~AharRGap  189 (323)
T KOG2702|consen  113 ALTSNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDL---FKDPQTAHARRGAP  189 (323)
T ss_pred             HhcccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHh---hcChHHHHhhcCCC
Confidence            4456667899999999999999999999876422             1222221  1111111   000000011111 1


Q ss_pred             CCCH-HHHHHHHHHHH----------------H---------hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEc
Q 029252           79 IVPS-EVTIKLLQKAM----------------E---------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC  132 (196)
Q Consensus        79 ~~~~-~~~~~~~~~~l----------------~---------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~  132 (196)
                      +.++ +++.++++-.-                .         +..++.+|++|.+...++ ..|.+ .....+...++++
T Consensus       190 wTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~-~~Wkd-i~k~~d~k~~idV  267 (323)
T KOG2702|consen  190 WTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQ-ENWKD-IYKTLDDKYKIDV  267 (323)
T ss_pred             cccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecC-ccHHH-HHHHhhhheeccc
Confidence            2222 33333322211                0         011566889997655544 22333 2233555799999


Q ss_pred             CHHHHHHHHhhc
Q 029252          133 SEEEMERRILNR  144 (196)
Q Consensus       133 ~~~~~~~R~~~R  144 (196)
                      +-++..+|...|
T Consensus       268 ~~~~a~~RVa~R  279 (323)
T KOG2702|consen  268 DYEAAEERVAKR  279 (323)
T ss_pred             cHHHHHHHHHHH
Confidence            999999999999

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=98.45  E-value=1.6e-06  Score=61.23  Aligned_cols=114  Identities=17%  Similarity=0.228  Sum_probs=56.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-C--C----cchHHHH--HH---HHcC-------CCCCHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-G--S----ENGTMIQ--NM---IKEG-------KIVPSE   83 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~-~--~----~~~~~~~--~~---~~~~-------~~~~~~   83 (196)
                      +|.|.|..|||++|+++.||+++|+.+++- +++...... +  .    .+.+...  ..   +..+       .....+
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD   79 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence            588999999999999999999999999988 555443222 0  0    0111111  11   1111       111122


Q ss_pred             HHHHHHHHHHHhc-CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           84 VTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        84 ~~~~~~~~~l~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+.......+.+. ....+|+.|..     ...+.  ...+..+-|||.+|.+...+|+.+|
T Consensus        80 ~~~~~~~~~i~~la~~~~~Vi~GR~-----a~~il--~~~~~~l~V~i~A~~~~Rv~ri~~~  134 (179)
T PF13189_consen   80 KIFRAQSEIIRELAAKGNCVIVGRC-----ANYIL--RDIPNVLHVFIYAPLEFRVERIMER  134 (179)
T ss_dssp             HHHHHHHHHHHHHHH---EEEESTT-----HHHHT--TT-TTEEEEEEEE-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCEEEEecC-----Hhhhh--CCCCCeEEEEEECCHHHHHHHHHHH
Confidence            2222222222211 13455666532     12222  2334457999999999999999988

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=2.1e-06  Score=66.13  Aligned_cols=38  Identities=24%  Similarity=0.386  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAE   59 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~--~~d~~~~~   59 (196)
                      +-++|+||||+|||.||+.++...+..+|+  ..++..++
T Consensus       246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKw  285 (491)
T KOG0738|consen  246 KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKW  285 (491)
T ss_pred             ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhh
Confidence            579999999999999999999999976654  44444443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.44  E-value=1.4e-05  Score=67.50  Aligned_cols=39  Identities=23%  Similarity=0.338  Sum_probs=29.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC-----cEecHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRA   58 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~-----~~~~~~d~~~~   58 (196)
                      ...+++|.|.||+||||+++.|++.+++     .++..+.+-+.
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~  257 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRR  257 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhh
Confidence            3568999999999999999999999854     44455444433

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.43  E-value=1.8e-07  Score=62.40  Aligned_cols=27  Identities=26%  Similarity=0.664  Sum_probs=24.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           24 VFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      |+|.|+||+||||+++.+++.++..++
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~   27 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFI   27 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccc
Confidence            689999999999999999999986554

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=98.43  E-value=2.5e-05  Score=56.95  Aligned_cols=150  Identities=17%  Similarity=0.123  Sum_probs=82.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      .+.|.+|++.|..||||..+.+.|.+.++-..+.+-.+       ..+...              +.....+.+.-...+
T Consensus        28 ~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~-------~~pt~e--------------E~~~p~lwRfw~~lP   86 (230)
T TIGR03707        28 TGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVAL-------PKPSDR--------------ERTQWYFQRYVQHLP   86 (230)
T ss_pred             cCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeC-------CCCCHH--------------HHcChHHHHHHHhCC
Confidence            34689999999999999999999999996433322110       000000              000111111111112


Q ss_pred             --CCeEEEeccCCC-------------------HHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc---cCCCCCC
Q 029252           98 --NDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR---NQGREDD  151 (196)
Q Consensus        98 --~~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R---~~~r~~~  151 (196)
                        ++..|+++....                   .++...|++.  .....-+-|||.++.++..+|+.+|   ...+-..
T Consensus        87 ~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~  166 (230)
T TIGR03707        87 AAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQWKL  166 (230)
T ss_pred             CCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccC
Confidence              555666653211                   1112222222  4444557999999999999999999   2233334


Q ss_pred             cHHHHHH--HHHHHHhcchhHHHHHH-hcCcEEEEeCCCC
Q 029252          152 NVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKVIFCSP  188 (196)
Q Consensus       152 ~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~  188 (196)
                      +...+..  +...|......++..-. ...++++|+++..
T Consensus       167 ~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk  206 (230)
T TIGR03707       167 SPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDK  206 (230)
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence            4333333  34555544444444332 2348999998753

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.41  E-value=7.1e-06  Score=64.70  Aligned_cols=108  Identities=25%  Similarity=0.372  Sum_probs=57.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh----CC-cEecHHHHHHHHHHcCCcchHHHHHHHHcCC-C-CCHHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF----GY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGK-I-VPSEVTIKLLQKA   92 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~----~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~   92 (196)
                      ++.++++.|++||||||++..|+..+    +. ..+...|..+...      ...+..+..... . ..... ...+...
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA------~eQLk~yAe~lgvp~~~~~~-~~~l~~~  294 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA------IEQLKRYADTMGMPFYPVKD-IKKFKET  294 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH------HHHHHHHHHhcCCCeeehHH-HHHHHHH
Confidence            45789999999999999999999765    21 3333335554421      122222222111 1 11111 2233333


Q ss_pred             HHhcCCCeEEEe--ccC-CCHHHHHHHHhhc---C--CCCcEEEEEEcCH
Q 029252           93 MEESGNDKFLID--GFP-RNEENRAAFEAVT---K--IEPEFVLFFDCSE  134 (196)
Q Consensus        93 l~~~~~~~~iid--g~~-~~~~~~~~~~~~~---~--~~~~~~i~l~~~~  134 (196)
                      +.....+.++||  |++ ....+...+..+.   .  .+...+++|++.-
T Consensus       295 l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~  344 (432)
T PRK12724        295 LARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS  344 (432)
T ss_pred             HHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence            443346779999  543 4556666665531   1  1334566666554

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=6.2e-06  Score=61.67  Aligned_cols=40  Identities=23%  Similarity=0.378  Sum_probs=33.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAEIK   61 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~--~~~~d~~~~~~~   61 (196)
                      .-|++.||||+|||++|+.+|..-+..+  ++..|++.+++.
T Consensus       167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG  208 (439)
T KOG0739|consen  167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG  208 (439)
T ss_pred             eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence            5699999999999999999999887544  456788877643

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.40  E-value=3.1e-07  Score=69.95  Aligned_cols=36  Identities=25%  Similarity=0.465  Sum_probs=32.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~   55 (196)
                      ++.+|+|.||+||||||+|..|+++++..+++.|.+
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            457899999999999999999999999988888773

>PHA03135 thymidine kinase; Provisional

Probab=98.38  E-value=1.5e-05  Score=60.81  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..|.|.|+.|+||||+++.+++..
T Consensus        10 ~~rIYlDG~~GvGKTT~~~~l~~~~   34 (343)
T PHA03135         10 LIRVYLDGPFGIGKTSMLNEMPDHS   34 (343)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHhc
Confidence            3679999999999999999998753

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=9.5e-07  Score=67.33  Aligned_cols=64  Identities=25%  Similarity=0.444  Sum_probs=48.4

Q ss_pred             cccCchhhhh--cccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHHHHHHcCCcch
Q 029252            4 VVETPVKEAD--ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSGSENG   67 (196)
Q Consensus         4 ~~~~~~~~~~--~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~~~~~~~~~~~~~   67 (196)
                      ++|.|+..++  ..+.-.+|+-|++.||||+|||-+|+++|.+-++.+|  .-..++.+.+..++.+-
T Consensus       166 ~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlV  233 (406)
T COG1222         166 VVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLV  233 (406)
T ss_pred             HhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHH
Confidence            4567776544  5677778899999999999999999999999987665  44566666655555443

>PLN02840 tRNA dimethylallyltransferase

Probab=98.35  E-value=5.3e-07  Score=71.01  Aligned_cols=38  Identities=24%  Similarity=0.386  Sum_probs=32.2

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d   54 (196)
                      ...+..+|+|.||+||||||++..|+++++..+++.|.
T Consensus        17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds   54 (421)
T PLN02840         17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS   54 (421)
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence            34455789999999999999999999999887777654

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.31  E-value=7.6e-07  Score=60.43  Aligned_cols=28  Identities=36%  Similarity=0.584  Sum_probs=25.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .+.+.|+|+|+||+||||+++++++.+.
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence            3567899999999999999999998874

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=98.31  E-value=6e-05  Score=60.86  Aligned_cols=146  Identities=13%  Similarity=0.086  Sum_probs=81.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   94 (196)
                      ...+.+|++.|..||||+++.+.|.+.++-   .+.........                        +.....+.+.-.
T Consensus        37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~e------------------------E~~~~flwRfw~   92 (493)
T TIGR03708        37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDE------------------------ERERPPMWRFWR   92 (493)
T ss_pred             cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHH------------------------HhcCcHHHHHHH
Confidence            356899999999999999999999999863   33322110000                        000111211111


Q ss_pred             hcC--CCeEEEeccCCC-------------------HHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc---cCCC
Q 029252           95 ESG--NDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR---NQGR  148 (196)
Q Consensus        95 ~~~--~~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R---~~~r  148 (196)
                      ..+  |...|.|++...                   .++...|++.  .....-+-|||.++.++..+|+.+|   ...+
T Consensus        93 ~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~  172 (493)
T TIGR03708        93 RLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETR  172 (493)
T ss_pred             hCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence            112  566666652211                   1111222221  3444456999999999999999999   2223


Q ss_pred             CCCcHHHHHH--HHHHHHhcchhHHHHHH-hcCcEEEEeCCC
Q 029252          149 EDDNVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKVIFCS  187 (196)
Q Consensus       149 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~  187 (196)
                      -..+...+..  +...|......++..-. ...++++|+++.
T Consensus       173 WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~add  214 (493)
T TIGR03708       173 WRVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGED  214 (493)
T ss_pred             cCCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence            3344444433  34445444444443322 233899999875

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>CHL00195 ycf46 Ycf46; Provisional

Probab=98.29  E-value=1.9e-05  Score=63.97  Aligned_cols=34  Identities=21%  Similarity=0.408  Sum_probs=29.3

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      ...|+-|++.||||||||++|+.++..++.+++.
T Consensus       256 l~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~  289 (489)
T CHL00195        256 LPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLR  289 (489)
T ss_pred             CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            3456789999999999999999999999876554

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=1.7e-06  Score=65.19  Aligned_cols=43  Identities=16%  Similarity=0.433  Sum_probs=33.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCc-----------EecHHHHHHHHHHc
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT-----------HLSAGDLLRAEIKS   62 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~-----------~~~~~d~~~~~~~~   62 (196)
                      ..++|++.||||+|||++||.|++++...           -++...++.+++..
T Consensus       176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsE  229 (423)
T KOG0744|consen  176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSE  229 (423)
T ss_pred             eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhh
Confidence            35789999999999999999999998422           24566666666554

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.24  E-value=3.6e-06  Score=56.10  Aligned_cols=26  Identities=27%  Similarity=0.539  Sum_probs=20.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...+++|.|++|+|||++++.+++.+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999999976

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=98.23  E-value=1e-06  Score=69.62  Aligned_cols=46  Identities=28%  Similarity=0.358  Sum_probs=34.7

Q ss_pred             cccCchhh---hhcccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252            4 VVETPVKE---ADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (196)
Q Consensus         4 ~~~~~~~~---~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~   49 (196)
                      ++++|.+.   .+....+.....|+|.|++|||||||++.|++++|...
T Consensus       199 IR~~p~~~w~~i~~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~  247 (399)
T PRK08099        199 IRENPFRYWEYIPTEVRPFFVRTVAILGGESSGKSTLVNKLANIFNTTS  247 (399)
T ss_pred             HhhCHHHHHHhcCHHHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence            45566653   33334445668899999999999999999999998654

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=98.23  E-value=9.8e-05  Score=54.98  Aligned_cols=151  Identities=11%  Similarity=0.115  Sum_probs=81.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (196)
                      ..|.+|++.|..||||..+.+.|.+.++-..+.+-.+       ..+.....    .  ..    . ...+...+= ..+
T Consensus        54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~-------~~Pt~eE~----~--~p----~-lWRfw~~lP-~~G  114 (264)
T TIGR03709        54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSF-------KAPSAEEL----D--HD----F-LWRIHKALP-ERG  114 (264)
T ss_pred             CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeC-------CCCCHHHH----c--Cc----h-HHHHHHhCC-CCC
Confidence            3489999999999999999999999986443332110       00000000    0  00    0 111222221 126


Q ss_pred             CeEEEeccCCC-------------------HHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc-c--CCCCCCcHH
Q 029252           99 DKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-N--QGREDDNVE  154 (196)
Q Consensus        99 ~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R-~--~~r~~~~~~  154 (196)
                      ...|+|+....                   .++...|++.  .....-+-|||.++.++..+|+.+| .  ..+-..+..
T Consensus       115 ~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~  194 (264)
T TIGR03709       115 EIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSPA  194 (264)
T ss_pred             eEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCHH
Confidence            66666653211                   1111222221  3444457999999999999999998 1  222233333


Q ss_pred             HHHH--HHHHHHhcchhHHHHHH-hcCcEEEEeCCCC
Q 029252          155 TIRK--RFKVFLESSLPVVQYYE-AKGKVRKVIFCSP  188 (196)
Q Consensus       155 ~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~  188 (196)
                      .+..  +...|......++..-. ...++++|+++..
T Consensus       195 D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk  231 (264)
T TIGR03709       195 DLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDK  231 (264)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence            3332  44555544444444322 2448999998753

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.20  E-value=1.5e-06  Score=62.69  Aligned_cols=28  Identities=29%  Similarity=0.463  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~   49 (196)
                      .-+++.||||+||||+|+.+|+.++..+
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~   78 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELGVNF   78 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred             ceEEEECCCccchhHHHHHHHhccCCCe
Confidence            4589999999999999999999998544

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=98.19  E-value=7.9e-06  Score=58.27  Aligned_cols=120  Identities=13%  Similarity=0.146  Sum_probs=58.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH-HcC--CcchHHH---------HHHHHcCCCCCHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSG--SENGTMI---------QNMIKEGKIVPSEVTIKLL   89 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~-~~~--~~~~~~~---------~~~~~~~~~~~~~~~~~~~   89 (196)
                      .+++|.||+|+|||.+|-.||+++|.++++.|.+..-.- .-+  .+....+         ...+..|. ++.+...+.+
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~L   80 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERL   80 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHH
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHH
Confidence            468999999999999999999999999998876544320 101  1111111         11233343 3333334444


Q ss_pred             HHHHHhcC-CCeEEEeccCCCHHHHHHHHhhc---CCCCcEEEEEEcC-HHHHHHHHhhc
Q 029252           90 QKAMEESG-NDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCS-EEEMERRILNR  144 (196)
Q Consensus        90 ~~~l~~~~-~~~~iidg~~~~~~~~~~~~~~~---~~~~~~~i~l~~~-~~~~~~R~~~R  144 (196)
                      ...+.... +.++|++|-.-+  -...+.+..   ..-...+.++..+ .+....|..+|
T Consensus        81 i~~v~~~~~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R  138 (233)
T PF01745_consen   81 ISEVNSYSAHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR  138 (233)
T ss_dssp             HHHHHTTTTSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred             HHHHHhccccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence            44444333 889999984322  222222211   2223456677665 46677777777

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=98.19  E-value=2.7e-06  Score=61.28  Aligned_cols=39  Identities=21%  Similarity=0.252  Sum_probs=31.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcE-ecHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIK   61 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~-~~~~d~~~~~~~   61 (196)
                      ++|+|+|+|||||||+++.+.++ +..+ +++.+.++..+.
T Consensus         1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~   40 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILA   40 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHH
Confidence            47999999999999999988655 5555 888888887544

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.18  E-value=1.6e-06  Score=57.96  Aligned_cols=27  Identities=33%  Similarity=0.636  Sum_probs=24.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      +..++|.|+|||||||+++.++..+..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence            467999999999999999999998854

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PLN02748 tRNA dimethylallyltransferase

Probab=98.18  E-value=2.1e-06  Score=68.75  Aligned_cols=36  Identities=33%  Similarity=0.545  Sum_probs=32.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d   54 (196)
                      .++.+|+|.||+||||||++..|+++++..+++.|.
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds   55 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS   55 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence            456789999999999999999999999999998865

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.17  E-value=2.2e-06  Score=66.24  Aligned_cols=29  Identities=17%  Similarity=0.417  Sum_probs=25.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+.++++|.|||||||||+++.|++.++.
T Consensus        76 ~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       76 ERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34688999999999999999999998853

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK09087 hypothetical protein; Validated

Probab=98.17  E-value=2.3e-05  Score=57.37  Aligned_cols=38  Identities=21%  Similarity=0.193  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA   58 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~   58 (196)
                      .+.++|.|++|||||++++.+++..+..+++.+++...
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~   81 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSD   81 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchH
Confidence            35689999999999999999999888888888654443

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=98.16  E-value=1.7e-06  Score=65.24  Aligned_cols=32  Identities=19%  Similarity=0.431  Sum_probs=29.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d   54 (196)
                      +|+|.||+|||||+++..|++.++..+++.|.
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds   32 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS   32 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence            48999999999999999999999988888866

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PHA03138 thymidine kinase; Provisional

Probab=98.15  E-value=9.2e-05  Score=56.66  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..|.|.|+.|+||||+++.+.+.+
T Consensus        12 ~~riYleG~~GvGKTT~~~~~l~~~   36 (340)
T PHA03138         12 ILRIYLDGAFGIGKTTAAEAFLHGF   36 (340)
T ss_pred             EEEEEEECCCCcCHHhHHHHHHHhh
Confidence            3679999999999999998787655

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=98.15  E-value=2e-05  Score=57.54  Aligned_cols=146  Identities=14%  Similarity=0.158  Sum_probs=73.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (196)
                      .|.+|++.|..||||+.+.+.|.+.++-   .+.+..........                ...     ...+...+ -.
T Consensus        30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE~~----------------~p~-----lwRfw~~l-P~   87 (228)
T PF03976_consen   30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEELR----------------RPF-----LWRFWRAL-PA   87 (228)
T ss_dssp             HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHHHT----------------S-T-----THHHHTTS---
T ss_pred             CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhHcC----------------CCc-----HHHHHHhC-CC
Confidence            4589999999999999999999988753   33332211111100                000     11111111 11


Q ss_pred             CCCeEEEeccCCC-------------------HHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc---cCCCCCCc
Q 029252           97 GNDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR---NQGREDDN  152 (196)
Q Consensus        97 ~~~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R---~~~r~~~~  152 (196)
                      .|...|+|+....                   .++...|++.  .....-+-|||.++.++..+|+.+|   ...+-..+
T Consensus        88 ~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~wkv~  167 (228)
T PF03976_consen   88 RGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRWKVS  167 (228)
T ss_dssp             TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGGG--
T ss_pred             CCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCccccccCC
Confidence            2777777763211                   1111222221  4444557999999999999999999   22333333


Q ss_pred             HHHHHH--HHHHHHhcchhHHHHHH-hcCcEEEEeCCC
Q 029252          153 VETIRK--RFKVFLESSLPVVQYYE-AKGKVRKVIFCS  187 (196)
Q Consensus       153 ~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~  187 (196)
                      +..+..  ....|......++..-. ...++++|+++.
T Consensus       168 ~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~d  205 (228)
T PF03976_consen  168 PEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADD  205 (228)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SS
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCC
Confidence            443333  34455544444444322 344899999875

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.15  E-value=9.6e-06  Score=62.61  Aligned_cols=27  Identities=33%  Similarity=0.519  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+|.+|+++|++|+||||++..|+..+
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l  164 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYL  164 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            357899999999999999888888765

>CHL00181 cbbX CbbX; Provisional

Probab=98.15  E-value=9.8e-05  Score=56.06  Aligned_cols=26  Identities=23%  Similarity=0.382  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+..+++.|+||+||||+|+.+++.+
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34568999999999999999998865

>PHA03134 thymidine kinase; Provisional

Probab=98.14  E-value=0.00041  Score=53.16  Aligned_cols=26  Identities=19%  Similarity=0.247  Sum_probs=22.6

Q ss_pred             cEEEEEEcCHHHHHHHHhhccCCCCCCc
Q 029252          125 EFVLFFDCSEEEMERRILNRNQGREDDN  152 (196)
Q Consensus       125 ~~~i~l~~~~~~~~~R~~~R~~~r~~~~  152 (196)
                      +.+|+++.++++..+|+.+|  +|+.+.
T Consensus       165 ~niVl~~l~~~e~~~Rl~~R--~R~gE~  190 (340)
T PHA03134        165 GNLVVTTLNPDEHLRRLRAR--ARIGEQ  190 (340)
T ss_pred             CeEEEEeCCHHHHHHHHHHc--CCCccc
Confidence            78999999999999999999  555543

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=98.14  E-value=1.9e-06  Score=59.90  Aligned_cols=37  Identities=27%  Similarity=0.532  Sum_probs=25.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS   62 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~   62 (196)
                      .|+|+|++||||||+++.|+++ |+.++  ....+.....
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~   37 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIEE   37 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHH
Confidence            3899999999999999999988 87766  4555554433

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.13  E-value=3.2e-06  Score=57.06  Aligned_cols=26  Identities=31%  Similarity=0.590  Sum_probs=23.8

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252           24 VFVLGGPGSGKGTQCANIVEHFGYTH   49 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~~~~~   49 (196)
                      |+|.|+||+|||++++.+++.++..+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~   27 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPV   27 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcce
Confidence            78999999999999999999998654

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK09169 hypothetical protein; Validated

Probab=98.12  E-value=0.00011  Score=67.61  Aligned_cols=108  Identities=12%  Similarity=0.067  Sum_probs=74.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGND   99 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~   99 (196)
                      ...|+|+|.+|+||||+.+.|+.+++..+++.|..+.+.      .+..+..++ ..|  .+.+.-...+...+.   ..
T Consensus      2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG--~FRe~Eaa~V~Dllr---~~ 2178 (2316)
T PRK09169       2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG--LSPEQAAARVRDALR---WE 2178 (2316)
T ss_pred             hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC--chHHHHHHHHHHHhc---CC
Confidence            357899999999999999999999999999998877765      334444444 333  555666666666553   33


Q ss_pred             eEEEe-cc-CCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          100 KFLID-GF-PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       100 ~~iid-g~-~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .||=. |+ .........+..     -.++||+..+.+++.+|+...
T Consensus      2179 vVLSTGGGav~~~enr~~L~~-----~GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169       2179 VVLPAEGFGAAVEQARQALGA-----KGLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred             eEEeCCCCcccCHHHHHHHHH-----CCEEEEEECCHHHHHHHhccC
Confidence            33322 32 233444444544     236999999999999998754

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.12  E-value=2.7e-06  Score=66.86  Aligned_cols=34  Identities=15%  Similarity=0.325  Sum_probs=30.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~   53 (196)
                      .|..|+|.|||||||||+++.|++.++.+++..+
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd   79 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   79 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence            4578999999999999999999999998777665

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=98.10  E-value=4.3e-06  Score=58.35  Aligned_cols=30  Identities=13%  Similarity=0.183  Sum_probs=25.5

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ...++.++.|+|++||||||+++.|...+.
T Consensus         2 ~~~~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          2 NKTMIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CCCCceEEEEECCCCChHHHHHHHHHHHHh
Confidence            345667999999999999999999998774

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=98.09  E-value=4.8e-06  Score=55.53  Aligned_cols=28  Identities=32%  Similarity=0.487  Sum_probs=25.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+.+|+|.|..||||||+++.+++.++.
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            4578999999999999999999999975

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PLN02796 D-glycerate 3-kinase

Probab=98.08  E-value=2.9e-06  Score=65.22  Aligned_cols=38  Identities=29%  Similarity=0.332  Sum_probs=30.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL   56 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~   56 (196)
                      ..|.+|.|.|++||||||+++.|...+.     ...++.|++.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            3678899999999999999999998874     2445555554

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.07  E-value=0.0001  Score=58.68  Aligned_cols=27  Identities=33%  Similarity=0.623  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+|.+|+++|++||||||.+..||..+
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l  124 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYY  124 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            347899999999999999999999766

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR00959 ffh signal recognition particle protein

Probab=98.06  E-value=7.2e-05  Score=59.70  Aligned_cols=27  Identities=41%  Similarity=0.733  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+|.+++++|++||||||++..||..+
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l  123 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYL  123 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            457899999999999999999888764

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.05  E-value=0.00016  Score=55.03  Aligned_cols=101  Identities=29%  Similarity=0.376  Sum_probs=63.3

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh---C-CcEecHHHHHHHHHHc-CCcchHHHHH-HHH-cCCCCCHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---G-YTHLSAGDLLRAEIKS-GSENGTMIQN-MIK-EGKIVPSEVTIKLLQ   90 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~---~-~~~~~~~d~~~~~~~~-~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~   90 (196)
                      ..+|.+|+++|..|+||||-..+||..+   | -+.+...|.+|...-. -..|++...- .+. ....-|..+..+.+.
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~  215 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ  215 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence            4568999999999999999999999887   3 3566777888875221 1111111110 011 112345567778887


Q ss_pred             HHHHhcCCCeEEEeccCCCHHHHHHHHhh
Q 029252           91 KAMEESGNDKFLIDGFPRNEENRAAFEAV  119 (196)
Q Consensus        91 ~~l~~~~~~~~iidg~~~~~~~~~~~~~~  119 (196)
                      .+..+ ....+++|-..+.++....+.++
T Consensus       216 ~Akar-~~DvvliDTAGRLhnk~nLM~EL  243 (340)
T COG0552         216 AAKAR-GIDVVLIDTAGRLHNKKNLMDEL  243 (340)
T ss_pred             HHHHc-CCCEEEEeCcccccCchhHHHHH
Confidence            76653 47788899766665555444443

>PRK10867 signal recognition particle protein; Provisional

Probab=98.04  E-value=5.9e-05  Score=60.20  Aligned_cols=27  Identities=33%  Similarity=0.628  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+|.+|+++|++||||||.+..||..+
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l  124 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYL  124 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            457899999999999999888888755

>PRK06620 hypothetical protein; Validated

Probab=98.04  E-value=0.00021  Score=51.94  Aligned_cols=30  Identities=13%  Similarity=0.025  Sum_probs=25.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      ..++|.|+||||||++++.+++..+..++.
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~   74 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK   74 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence            568999999999999999998887765554

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.04  E-value=5.7e-05  Score=64.67  Aligned_cols=33  Identities=24%  Similarity=0.520  Sum_probs=27.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      ..|..++|.||||||||++|+.++..++..++.
T Consensus       485 ~~~~giLL~GppGtGKT~lakalA~e~~~~fi~  517 (733)
T TIGR01243       485 RPPKGVLLFGPPGTGKTLLAKAVATESGANFIA  517 (733)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence            445679999999999999999999998765553

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=98.03  E-value=6.8e-06  Score=62.20  Aligned_cols=37  Identities=22%  Similarity=0.409  Sum_probs=33.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLL   56 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~   56 (196)
                      .+.+|+|.||+|||||-+|-.||++++..+|+.|...
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQ   38 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQ   38 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhh
Confidence            4678999999999999999999999999999987653

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=98.03  E-value=5.1e-06  Score=65.41  Aligned_cols=33  Identities=15%  Similarity=0.334  Sum_probs=29.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~   53 (196)
                      |..|+|.|||||||||+|+.|++.++.+++..|
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD   82 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence            577999999999999999999999987766654

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.02  E-value=0.00014  Score=59.52  Aligned_cols=33  Identities=30%  Similarity=0.516  Sum_probs=28.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      ..|..++|.||||||||++++.++...+..++.
T Consensus        86 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~  118 (495)
T TIGR01241        86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS  118 (495)
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence            445679999999999999999999998866554

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.02  E-value=5.3e-06  Score=59.21  Aligned_cols=27  Identities=37%  Similarity=0.551  Sum_probs=22.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++-+++|.|||||||||+.+.| +.|
T Consensus        25 v~~Gevv~iiGpSGSGKSTlLRcl-N~L   51 (240)
T COG1126          25 VEKGEVVVIIGPSGSGKSTLLRCL-NGL   51 (240)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHH-HCC
Confidence            346688999999999999999998 444

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.02  E-value=1.3e-05  Score=64.10  Aligned_cols=27  Identities=37%  Similarity=0.628  Sum_probs=24.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..|.+|+++|++||||||++..|+..+
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L  119 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYF  119 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            457899999999999999999999877

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.01  E-value=7.3e-05  Score=60.81  Aligned_cols=29  Identities=28%  Similarity=0.501  Sum_probs=25.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      ..|..++|.||||+|||++++.+++.++.
T Consensus       214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~  242 (512)
T TIGR03689       214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQ  242 (512)
T ss_pred             CCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence            34667999999999999999999998753

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.01  E-value=4e-05  Score=60.34  Aligned_cols=27  Identities=30%  Similarity=0.473  Sum_probs=24.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..|.+|+++|++|+||||.+..||..+
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~  198 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIY  198 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999999865

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=98.01  E-value=6.6e-06  Score=63.63  Aligned_cols=41  Identities=34%  Similarity=0.656  Sum_probs=32.7

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRA   58 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~--~~~~d~~~~   58 (196)
                      ...|..+.|.||||+|||.+|+.+++.++..+  ++..++..+
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk  187 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE  187 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence            45678899999999999999999999998654  455555433

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=98.00  E-value=5.2e-06  Score=65.22  Aligned_cols=38  Identities=26%  Similarity=0.240  Sum_probs=30.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL   56 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~   56 (196)
                      .+|.+|.|.|++||||||+++.|...+.     ...++.||+.
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            3678999999999999999999987663     3456666655

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=0.00012  Score=59.82  Aligned_cols=34  Identities=24%  Similarity=0.409  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      ...+..+++.||||+|||++|+.++..++..+++
T Consensus       273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~  306 (494)
T COG0464         273 LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS  306 (494)
T ss_pred             CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence            3455689999999999999999999987766554

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.99  E-value=7.9e-06  Score=61.23  Aligned_cols=27  Identities=30%  Similarity=0.439  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +...-+++.||||+||||+|+.+++.+
T Consensus        40 ~~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        40 KQVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999999865

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.98  E-value=0.00014  Score=57.15  Aligned_cols=26  Identities=27%  Similarity=0.449  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+.+|+|.|++||||||++..|+..+
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L  265 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQF  265 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence            46789999999999999999999766

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.97  E-value=8.6e-06  Score=56.94  Aligned_cols=31  Identities=23%  Similarity=0.422  Sum_probs=25.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC--CcEecH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA   52 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~   52 (196)
                      +.++|.|+|||||||+|..++.+++  ..++..
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat   34 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIAT   34 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence            4689999999999999999999876  344443

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.96  E-value=0.00067  Score=52.62  Aligned_cols=24  Identities=29%  Similarity=0.542  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+++.||||+||||+++.+++.+
T Consensus        37 ~~lll~Gp~GtGKT~la~~~~~~l   60 (337)
T PRK12402         37 PHLLVQGPPGSGKTAAVRALAREL   60 (337)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            458899999999999999999887

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.96  E-value=1.4e-05  Score=53.74  Aligned_cols=26  Identities=31%  Similarity=0.613  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ....++|.|+||+||||+++.+++.+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999999987

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK12377 putative replication protein; Provisional

Probab=97.96  E-value=0.00042  Score=51.42  Aligned_cols=38  Identities=26%  Similarity=0.398  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE   59 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~~   59 (196)
                      ..++|.|+||+|||++|..+++.+   +  ..+++..+++...
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l  144 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL  144 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence            578999999999999999999887   2  3456666666544

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.96  E-value=8.7e-06  Score=58.26  Aligned_cols=25  Identities=32%  Similarity=0.600  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      |.+|+++||+|+||||.+.+||.++
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~   25 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARL   25 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHH
Confidence            6789999999999999999999876

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.95  E-value=1.3e-05  Score=63.50  Aligned_cols=40  Identities=23%  Similarity=0.465  Sum_probs=31.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLR   57 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~--~~~~d~~~   57 (196)
                      ...|..|+|.||||+|||++|+.+++.++..+  ++..++..
T Consensus       162 ~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~  203 (389)
T PRK03992        162 IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ  203 (389)
T ss_pred             CCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence            34567899999999999999999999987544  44444443

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.94  E-value=1.4e-05  Score=63.27  Aligned_cols=35  Identities=26%  Similarity=0.470  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      ....|..++|.||||||||++++.++..++..++.
T Consensus       175 Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~  209 (398)
T PTZ00454        175 GIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR  209 (398)
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence            34467789999999999999999999998765543

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.94  E-value=1.4e-05  Score=52.43  Aligned_cols=30  Identities=33%  Similarity=0.437  Sum_probs=26.9

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+|.++.+.|+||+|||.+++.||+.+
T Consensus        48 ~~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   48 PNPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             CCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            356788999999999999999999999985

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>CHL00176 ftsH cell division protein; Validated

Probab=97.94  E-value=0.0004  Score=58.28  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=28.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      ..+.-++|.||||+|||++|+.++...+.+++.
T Consensus       214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~  246 (638)
T CHL00176        214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFS  246 (638)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            345679999999999999999999998866554

>PF13245 AAA_19: Part of AAA domain

Probab=97.93  E-value=1.4e-05  Score=48.00  Aligned_cols=25  Identities=40%  Similarity=0.608  Sum_probs=18.4

Q ss_pred             CcEEEEEcCCCCChH-HHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKG-TQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKs-Tla~~L~~~~   45 (196)
                      ..+.+|.|+|||||| |+++.++..+
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            466788999999999 5555555444

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=6e-05  Score=63.33  Aligned_cols=128  Identities=15%  Similarity=0.156  Sum_probs=68.6

Q ss_pred             ccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH--HHHHHHHHHcCC-cchHHHHHHH-----------------
Q 029252           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA--GDLLRAEIKSGS-ENGTMIQNMI-----------------   74 (196)
Q Consensus        15 ~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~--~d~~~~~~~~~~-~~~~~~~~~~-----------------   74 (196)
                      .+.-.-|+-++|+||||+|||-||+++|..-+.+++++  .+++.-....+. .....+...-                 
T Consensus       338 ~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~  417 (774)
T KOG0731|consen  338 ELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGR  417 (774)
T ss_pred             HcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccc
Confidence            34445577899999999999999999999988888763  232222111111 1111111100                 


Q ss_pred             Hc-C--CCCCHHHHHHHHHHHHHhcC----CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhh
Q 029252           75 KE-G--KIVPSEVTIKLLQKAMEESG----NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (196)
Q Consensus        75 ~~-~--~~~~~~~~~~~~~~~l~~~~----~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~  143 (196)
                      .+ |  .....+-..+-+...+-+-+    ...+|+.+....++..+.-.- +-..+|..|+++.|...-+..+.+
T Consensus       418 ~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~all-rpGRfdr~i~i~~p~~~~r~~i~~  492 (774)
T KOG0731|consen  418 KRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALL-RPGRFDRQIQIDLPDVKGRASILK  492 (774)
T ss_pred             cccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhc-CCCccccceeccCCchhhhHHHHH
Confidence            01 1  11111111222222222212    455777765544444333222 566788899999987766666654

>PHA03133 thymidine kinase; Provisional

Probab=97.92  E-value=0.00094  Score=51.53  Aligned_cols=25  Identities=32%  Similarity=0.497  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ..|.|.|+.|.||||+++.+...++
T Consensus        41 ~rvYlDG~~GvGKTTt~~~l~~a~~   65 (368)
T PHA03133         41 LRIYVDGPHGLGKTTTAAALAAALG   65 (368)
T ss_pred             EEEEEeCCCcCCHHHHHHHHHHhhC
Confidence            5799999999999999988888775

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.92  E-value=1.3e-05  Score=55.97  Aligned_cols=22  Identities=36%  Similarity=0.770  Sum_probs=20.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 029252           24 VFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      |+|+|+||+||||+++.+.+.+
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            7999999999999999999988

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.91  E-value=0.00057  Score=55.14  Aligned_cols=27  Identities=19%  Similarity=0.284  Sum_probs=24.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      +..++++||+|+||||+|+.+++.++.
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnc   66 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNC   66 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            457899999999999999999999875

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=6e-05  Score=61.52  Aligned_cols=45  Identities=27%  Similarity=0.537  Sum_probs=35.0

Q ss_pred             Cchhhhh--cccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252            7 TPVKEAD--ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus         7 ~~~~~~~--~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      .|++.++  ....-..|.-|+|+||||||||-+|+++|+.-+..+++
T Consensus       529 ~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFis  575 (802)
T KOG0733|consen  529 APIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFIS  575 (802)
T ss_pred             hhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEe
Confidence            3444432  45555667889999999999999999999988776665

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.91  E-value=3.7e-05  Score=55.35  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=24.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .-++|.||+|+||+|+.++|.+.++.
T Consensus        38 ~~ivl~gpsg~gk~tll~~l~ee~~~   63 (231)
T KOG0707|consen   38 KPIVLSGPSGVGKSTLLKRLREELGG   63 (231)
T ss_pred             ceEEEeCCCCcchhHHHHHHHHHcCC
Confidence            77999999999999999999999973

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.91  E-value=1.2e-05  Score=61.54  Aligned_cols=29  Identities=28%  Similarity=0.455  Sum_probs=26.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      .-|+|.|+||+||||+++.|+++++..++
T Consensus        65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~   93 (327)
T TIGR01650        65 RRVMVQGYHGTGKSTHIEQIAARLNWPCV   93 (327)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence            45999999999999999999999987654

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type

Probab=97.90  E-value=0.00028  Score=49.02  Aligned_cols=115  Identities=13%  Similarity=0.114  Sum_probs=69.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCCC---CC--------------H
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKI---VP--------------S   82 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------------~   82 (196)
                      +|+|+|..+|||.|++..|.++++.   .++...+.++..+....  +..+...+..+.+   .+              .
T Consensus         1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~--gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp   78 (182)
T TIGR01223         1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEH--GLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP   78 (182)
T ss_pred             CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHh--ChhHHHhcCCcccchhhhHHHHHHHHHHHhhCc
Confidence            5899999999999999999999874   25666666666544311  1111111111110   00              0


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ..+...+..   ..+...|||.+. +.......|.. ....-...|-+.+++++..+|.-..
T Consensus        79 ~~F~r~~~~---~~~~~v~iIsD~-Rr~~dv~~f~~-~~g~~~~~VRV~AseetR~~Rgw~F  135 (182)
T TIGR01223        79 GFFCRKIVE---GISQPIWLVSDT-RRVSDIQWFRE-AYGAVTQTVRVVALEQSRQQRGWVF  135 (182)
T ss_pred             cHHHHHHHh---ccCCCEEEEeCC-CcccHHHHHHH-HcCCceEEEEEecCHHHHHHHHHhc
Confidence            111222222   112557788875 55667777777 4434446899999999999998655

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.90  E-value=1.1e-05  Score=55.41  Aligned_cols=29  Identities=21%  Similarity=0.337  Sum_probs=24.3

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...++-.|.|+|||||||||+.+.++.-.
T Consensus        25 ~v~~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          25 SVRAGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             eecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence            34456789999999999999999998743

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.90  E-value=1.1e-05  Score=52.09  Aligned_cols=23  Identities=26%  Similarity=0.601  Sum_probs=20.4

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhC
Q 029252           24 VFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      |+|.|+||+|||++++.|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999987653

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.89  E-value=1.3e-05  Score=58.48  Aligned_cols=27  Identities=37%  Similarity=0.461  Sum_probs=23.4

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .-..+-++.|.|||||||||+.+.++-
T Consensus        25 ~v~~GEfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          25 SVEKGEFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            344668999999999999999999985

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.89  E-value=1.7e-05  Score=62.31  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=27.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ..|..++|.||||+|||++++.+++.++..++
T Consensus       154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~  185 (364)
T TIGR01242       154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFI  185 (364)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhCCCCEE
Confidence            44677999999999999999999999876544

Many proteins may score above the trusted cutoff because an internal

>PF05729 NACHT: NACHT domain

Probab=97.89  E-value=1.4e-05  Score=55.31  Aligned_cols=24  Identities=33%  Similarity=0.686  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+++|.|.+|+||||+++.++..+
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHH
Confidence            368999999999999999999877

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.89  E-value=6.4e-05  Score=55.08  Aligned_cols=25  Identities=40%  Similarity=0.579  Sum_probs=21.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +++..++|.|+||||||+++.+++-
T Consensus        17 p~gs~~li~G~~GsGKT~l~~q~l~   41 (226)
T PF06745_consen   17 PKGSVVLISGPPGSGKTTLALQFLY   41 (226)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHH
Confidence            4568999999999999999988663

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.88  E-value=1.4e-05  Score=57.99  Aligned_cols=26  Identities=27%  Similarity=0.354  Sum_probs=22.5

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      -.+.-+++|.|||||||||+...++-
T Consensus        28 i~~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          28 IEAGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            34567899999999999999998864

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.88  E-value=1.6e-05  Score=61.63  Aligned_cols=30  Identities=23%  Similarity=0.268  Sum_probs=25.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ..-.++.||||+||||+|+.++...+..+.
T Consensus        48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~   77 (436)
T COG2256          48 LHSMILWGPPGTGKTTLARLIAGTTNAAFE   77 (436)
T ss_pred             CceeEEECCCCCCHHHHHHHHHHhhCCceE
Confidence            345789999999999999999999876544

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=97.88  E-value=7.4e-06  Score=53.88  Aligned_cols=26  Identities=31%  Similarity=0.557  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252           24 VFVLGGPGSGKGTQCANIVEHFGYTH   49 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~~~~~   49 (196)
                      ++|.|+||+||||+++.|++.++..+
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~f   27 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLSF   27 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--E
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCce
Confidence            68999999999999999999998544

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.88  E-value=1.5e-05  Score=50.94  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIV   42 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~   42 (196)
                      ...+++|.|+|||||||+++.+.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            35789999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.88  E-value=6.4e-05  Score=56.86  Aligned_cols=36  Identities=22%  Similarity=0.484  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~   55 (196)
                      +-++|+|.|++|||||-|+--||.+|+..+|+.|.+
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm   41 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM   41 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccce
Confidence            457999999999999999999999999999887553

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.87  E-value=1.8e-05  Score=51.97  Aligned_cols=29  Identities=28%  Similarity=0.462  Sum_probs=24.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      +...+|++.|.-||||||+++.+++.++.
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~   41 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALGI   41 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            34578999999999999999999999875

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE

Probab=97.87  E-value=0.0008  Score=50.28  Aligned_cols=123  Identities=20%  Similarity=0.185  Sum_probs=59.5

Q ss_pred             cCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcC-CcchHHHHH---HHHcCCCCCHHH--H-----------HHH
Q 029252           28 GGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSG-SENGTMIQN---MIKEGKIVPSEV--T-----------IKL   88 (196)
Q Consensus        28 G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~--~-----------~~~   88 (196)
                      |+.|.||||+++.+++...  ..++...+.+..+-.-. +..-+.+.+   ....|..-..+.  .           ...
T Consensus         1 G~~GvGKTT~~~~l~~~~~~~~~vl~~pEPM~YWr~~f~~d~i~~Iy~~~~r~~~G~~s~~~as~~~~~~Q~~fatP~~~   80 (281)
T PF00693_consen    1 GAMGVGKTTTLKALAEALPAGDPVLYFPEPMAYWRTVFGTDVIKGIYEAQKRKDRGEISSEEASAIMASCQMKFATPYLA   80 (281)
T ss_dssp             SSTTSSHHHHHHHHHHCCTSSCCEEEE---HHHHHTCSSSSHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHccCCCCCeEEecccHHHHHHHhhHHHHHHHHHHHhHhhccCcCccHHHHHHHHHHHHhcchHHH
Confidence            8899999999999999874  34555445544442222 222233332   223333321110  0           111


Q ss_pred             HHHHHHh------------cCCCeEEEeccCCCHH----------------HHHHHHh-h-cCCCCcEEEEEEcCHHHHH
Q 029252           89 LQKAMEE------------SGNDKFLIDGFPRNEE----------------NRAAFEA-V-TKIEPEFVLFFDCSEEEME  138 (196)
Q Consensus        89 ~~~~l~~------------~~~~~~iidg~~~~~~----------------~~~~~~~-~-~~~~~~~~i~l~~~~~~~~  138 (196)
                      +...+..            .+...+|+|.+|....                ..-.+.. + ...+-+-+|.++.+.++..
T Consensus        81 ~~~~i~~~~~~~~~~~~~~~pd~~~ifDRHplAA~vcFPlary~~G~ls~~~li~lla~~p~~~pG~niVl~~L~~~E~~  160 (281)
T PF00693_consen   81 LHARISRLCGPEAVPPAGPSPDVWLIFDRHPLAATVCFPLARYLLGDLSFEDLISLLATFPPEPPGTNIVLMTLPEEEHL  160 (281)
T ss_dssp             HHHHHCCTSEEEEECTTSSS-SEEEEEES-THHHHTHHHHHHHHTTSS-HHHHHHHHTTS----TTEEEEEEE--HHHHH
T ss_pred             HHHHHHHhcCCccCCCCCCCCCeEEEEecchhHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHH
Confidence            2222211            1134578897654321                1111111 0 2233455888999999999


Q ss_pred             HHHhhccCCCCCCc
Q 029252          139 RRILNRNQGREDDN  152 (196)
Q Consensus       139 ~R~~~R~~~r~~~~  152 (196)
                      +|+.+|  +|+.+.
T Consensus       161 rRl~~R--~R~gE~  172 (281)
T PF00693_consen  161 RRLKAR--GRPGER  172 (281)
T ss_dssp             HHHHHT--STTT-S
T ss_pred             HHHHHc--CCCccc
Confidence            999999  666654

The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=97.87  E-value=0.0011  Score=53.84  Aligned_cols=149  Identities=15%  Similarity=0.113  Sum_probs=83.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      ...+.+|++.|..+|||....+.|.+.++-..+.+-.+       ..+...              +.....+.+.-...+
T Consensus       296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~-------~~Pt~~--------------E~~~~~lwRf~~~lP  354 (493)
T TIGR03708       296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPI-------AAPTDE--------------EKAQHYLWRFWRHIP  354 (493)
T ss_pred             CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeC-------CCcCHH--------------HHcCcHHHHHHHhCC
Confidence            45689999999999999999999999986433322000       111110              011111222222222


Q ss_pred             --CCeEEEeccC-------------CCHH------HHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc---cCCCCCC
Q 029252           98 --NDKFLIDGFP-------------RNEE------NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR---NQGREDD  151 (196)
Q Consensus        98 --~~~~iidg~~-------------~~~~------~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R---~~~r~~~  151 (196)
                        +...|+|++.             ...+      +...|++.  .....-+-|||.++.++..+|+..|   ...+-..
T Consensus       355 ~~G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k~WK~  434 (493)
T TIGR03708       355 RRGRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFKRYKI  434 (493)
T ss_pred             CCCeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCccCCcC
Confidence              5666666421             1111      11222221  4445557999999999999999999   2333445


Q ss_pred             cHHHHHH--HHHHHHhcchhHHHHHH-hcCcEEEEeCCC
Q 029252          152 NVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKVIFCS  187 (196)
Q Consensus       152 ~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~  187 (196)
                      +++.+..  +...|......++..-. ...++++|.++.
T Consensus       435 t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~d  473 (493)
T TIGR03708       435 TDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEAND  473 (493)
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCC
Confidence            5555444  34445444444443322 234899999875

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.86  E-value=2.1e-05  Score=64.17  Aligned_cols=31  Identities=19%  Similarity=0.444  Sum_probs=27.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ...+++|.|||||||||..+.|++.++..+.
T Consensus        44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~   74 (519)
T PF03215_consen   44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQ   74 (519)
T ss_pred             CcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence            4568999999999999999999999987554

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.84  E-value=1.9e-05  Score=59.16  Aligned_cols=29  Identities=21%  Similarity=0.271  Sum_probs=24.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      .-++|.|+||+|||++|+.+++.++..++
T Consensus        22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~   50 (262)
T TIGR02640        22 YPVHLRGPAGTGKTTLAMHVARKRDRPVM   50 (262)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            45779999999999999999998886544

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=97.84  E-value=2.4e-05  Score=59.42  Aligned_cols=34  Identities=15%  Similarity=0.288  Sum_probs=29.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~   55 (196)
                      +++|+|.||+|||||.+|-.||++ +..+++.|..
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~   37 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI   37 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence            358999999999999999999999 5588887654

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.83  E-value=1.9e-05  Score=56.71  Aligned_cols=24  Identities=38%  Similarity=0.612  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +|+|.||+||||||+++.+...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            689999999999999999888774

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.83  E-value=2.1e-05  Score=55.74  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 029252           24 VFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++|.|+||||||+++..++...
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~   23 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAG   23 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Confidence            7899999999999999886643

A related protein is found in archaea.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=4.8e-05  Score=58.81  Aligned_cols=113  Identities=26%  Similarity=0.443  Sum_probs=67.5

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh---CC-cEecHHHHHHHHHHcCCcchHHHHHHHHcCCC--------CCHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKI--------VPSEV   84 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~---~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~   84 (196)
                      ...+|.+|.++|.-||||||.|-+||-.+   |+ +.+.+.|.+|...     +.+.-....+.+..        -|..+
T Consensus        97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA-----fDQLkqnA~k~~iP~ygsyte~dpv~i  171 (483)
T KOG0780|consen   97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA-----FDQLKQNATKARVPFYGSYTEADPVKI  171 (483)
T ss_pred             ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch-----HHHHHHHhHhhCCeeEecccccchHHH
Confidence            45578999999999999999999999877   33 3444445555431     11111112221111        12223


Q ss_pred             HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhh----cCCCCcEE-EEEEcCHH
Q 029252           85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV----TKIEPEFV-LFFDCSEE  135 (196)
Q Consensus        85 ~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~----~~~~~~~~-i~l~~~~~  135 (196)
                      ...-+.+ ..+..-..+|+|...+...+...+.++    ....|+.+ +++|.+--
T Consensus       172 a~egv~~-fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG  226 (483)
T KOG0780|consen  172 ASEGVDR-FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG  226 (483)
T ss_pred             HHHHHHH-HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence            3333333 233347778899887777777777665    56677774 45577743

>COG4240 Predicted kinase [General function prediction only]

Probab=97.82  E-value=3.1e-05  Score=55.76  Aligned_cols=45  Identities=36%  Similarity=0.393  Sum_probs=35.0

Q ss_pred             cccCCCCCcEEEEEcCCCCChHHHHHHHHHHh---C---CcEecHHHHHHH
Q 029252           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---G---YTHLSAGDLLRA   58 (196)
Q Consensus        14 ~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~---~---~~~~~~~d~~~~   58 (196)
                      ......+|.++.|.||-||||||++..+...+   +   ...++.||++.-
T Consensus        43 ~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlt   93 (300)
T COG4240          43 WAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLT   93 (300)
T ss_pred             hhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcc
Confidence            34455678999999999999999998887655   2   356788887654

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00011  Score=61.01  Aligned_cols=44  Identities=25%  Similarity=0.394  Sum_probs=34.2

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH--HHHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA--GDLLRAEI   60 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~--~d~~~~~~   60 (196)
                      +...+.-|++.||||||||.++..++..++..+++.  .+++.+.+
T Consensus       697 plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI  742 (952)
T KOG0735|consen  697 PLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI  742 (952)
T ss_pred             CcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence            334456799999999999999999999999888873  34444443

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.82  E-value=0.00075  Score=58.14  Aligned_cols=28  Identities=14%  Similarity=0.178  Sum_probs=25.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      -+..++++|++|+||||+|+.+++.++.
T Consensus        37 l~HAyLFtGPpGtGKTTLARiLAk~Lnc   64 (944)
T PRK14949         37 LHHAYLFTGTRGVGKTSLARLFAKGLNC   64 (944)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence            4567899999999999999999999875

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.82  E-value=3.1e-05  Score=61.87  Aligned_cols=33  Identities=30%  Similarity=0.501  Sum_probs=27.7

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ...+..++|.||||||||++++.++..++..++
T Consensus       214 i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi  246 (438)
T PTZ00361        214 IKPPKGVILYGPPGTGKTLLAKAVANETSATFL  246 (438)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence            345678999999999999999999999875544

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.82  E-value=2.3e-05  Score=55.98  Aligned_cols=30  Identities=23%  Similarity=0.423  Sum_probs=24.2

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +.-....+..+.|||||||||+.+.+ ++++
T Consensus        28 l~i~~~~VTAlIGPSGcGKST~LR~l-NRmn   57 (253)
T COG1117          28 LDIPKNKVTALIGPSGCGKSTLLRCL-NRMN   57 (253)
T ss_pred             eeccCCceEEEECCCCcCHHHHHHHH-Hhhc
Confidence            33456688999999999999999988 5553

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.81  E-value=1.8e-05  Score=62.83  Aligned_cols=32  Identities=19%  Similarity=0.318  Sum_probs=27.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~   52 (196)
                      ...++|.||||||||++|+.|++.++.+++..
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i  139 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIA  139 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence            35689999999999999999999998665543

>PRK06893 DNA replication initiation factor; Validated

Probab=97.81  E-value=0.00039  Score=51.07  Aligned_cols=33  Identities=18%  Similarity=0.398  Sum_probs=26.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh-----CCcEecHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAG   53 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~-----~~~~~~~~   53 (196)
                      .+.++|.|+||+|||++++.+++.+     +..++...
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            4578999999999999999999875     45566654

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.80  E-value=0.0014  Score=54.70  Aligned_cols=28  Identities=18%  Similarity=0.223  Sum_probs=25.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+..++++|++|+||||+++.|++.++.
T Consensus        37 LpHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         37 LHHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4567899999999999999999999875

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.80  E-value=2.7e-05  Score=60.12  Aligned_cols=30  Identities=30%  Similarity=0.448  Sum_probs=26.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ...|+|.|+|||||||+++.|++.++..++
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v  191 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA  191 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence            468999999999999999999999887664

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.80  E-value=2.3e-05  Score=55.33  Aligned_cols=30  Identities=20%  Similarity=0.436  Sum_probs=19.9

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ....+..++|.|++|+||||+++.+.+++.
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345578999999999999999998887763

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.80  E-value=9.6e-05  Score=54.60  Aligned_cols=26  Identities=31%  Similarity=0.576  Sum_probs=21.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +++..++|.|+||||||++|..++-.
T Consensus        19 ~~gs~~lI~G~pGsGKT~la~~~l~~   44 (237)
T TIGR03877        19 PERNVVLLSGGPGTGKSIFSQQFLWN   44 (237)
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            35689999999999999999876543

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=1.5e-05  Score=62.64  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=30.2

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      .....+.-.++.||||+||||+..++|+.|++.+.+
T Consensus       230 vGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIyd  265 (457)
T KOG0743|consen  230 VGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYD  265 (457)
T ss_pred             cCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEE
Confidence            344456779999999999999999999999976654

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.79  E-value=1.9e-05  Score=60.64  Aligned_cols=25  Identities=32%  Similarity=0.423  Sum_probs=22.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..+-+++|.|||||||||+.+.+|-
T Consensus        27 ~~Gef~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          27 EDGEFVVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3456899999999999999999984

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.78  E-value=3.1e-05  Score=56.20  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=25.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d   54 (196)
                      |..++|.|+||+||||+|+.|+.  ...+++.|.
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~   43 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM   43 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence            57799999999999999999862  345666544

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=97.78  E-value=8.4e-05  Score=57.70  Aligned_cols=111  Identities=21%  Similarity=0.246  Sum_probs=67.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-ND   99 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~   99 (196)
                      ..++++.|++|||||++...|.+. +..+++..++....   ++.++...     . ..-...-+.+.+...+...+ ..
T Consensus       141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~-----~-~qpsQ~~Fe~~l~~~l~~~~~~~  210 (345)
T PRK11784        141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLG-----G-PQPSQKDFENLLAEALLKLDPAR  210 (345)
T ss_pred             CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCC-----C-CCcchHHHHHHHHHHHHcCCCCC
Confidence            456889999999999999999754 66788887766554   33332111     0 11122334555656565544 46


Q ss_pred             eEEEeccCCCHHH----HHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          100 KFLIDGFPRNEEN----RAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       100 ~~iidg~~~~~~~----~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+++++....+-.    ...+..+.. .  ..|++++|.+...+|+.+-
T Consensus       211 ~i~vE~Es~~IG~~~lP~~l~~~m~~-~--~~v~i~~~~e~Rv~~l~~~  256 (345)
T PRK11784        211 PIVVEDESRRIGRVHLPEALYEAMQQ-A--PIVVVEAPLEERVERLLED  256 (345)
T ss_pred             eEEEEeccccccCccCCHHHHHHHhh-C--CEEEEECCHHHHHHHHHHH
Confidence            7778863322211    112222111 2  3789999999999999887

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.78  E-value=0.0015  Score=53.93  Aligned_cols=28  Identities=18%  Similarity=0.188  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+..+++.|++|+||||+|+.+++.++.
T Consensus        37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         37 VHHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3456899999999999999999998864

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.78  E-value=3.7e-05  Score=58.88  Aligned_cols=29  Identities=28%  Similarity=0.432  Sum_probs=25.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~   48 (196)
                      .+..++++||||+|||++++.+++.++..
T Consensus        29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~   57 (305)
T TIGR00635        29 ALDHLLLYGPPGLGKTTLAHIIANEMGVN   57 (305)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            34568999999999999999999998743

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK04328 hypothetical protein; Provisional

Probab=97.77  E-value=0.00011  Score=54.70  Aligned_cols=36  Identities=25%  Similarity=0.492  Sum_probs=26.0

Q ss_pred             hhhhhcccC--CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252            9 VKEADATVT--VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus         9 ~~~~~~~~~--~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ++.++..+.  -+++..++|.|+||||||+++..++..
T Consensus         9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~   46 (249)
T PRK04328          9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN   46 (249)
T ss_pred             chhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            334444433  235689999999999999999886643

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.77  E-value=3.5e-05  Score=59.69  Aligned_cols=30  Identities=30%  Similarity=0.417  Sum_probs=25.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~   49 (196)
                      .+..++|.||||+||||+|+.+++.++..+
T Consensus        50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~   79 (328)
T PRK00080         50 ALDHVLLYGPPGLGKTTLANIIANEMGVNI   79 (328)
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence            345689999999999999999999997643

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=97.77  E-value=0.0013  Score=55.84  Aligned_cols=28  Identities=18%  Similarity=0.195  Sum_probs=25.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+..++++|++|+||||+++.|++.++.
T Consensus        37 L~HAyLFtGPpGvGKTTlAriLAKaLnC   64 (830)
T PRK07003         37 LHHAYLFTGTRGVGKTTLSRIFAKALNC   64 (830)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3567889999999999999999999875

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=97.77  E-value=0.00035  Score=47.54  Aligned_cols=128  Identities=16%  Similarity=0.182  Sum_probs=69.1

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHc--CCcchHHHHHH-HHcCC-C--C-CHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKS--GSENGTMIQNM-IKEGK-I--V-PSEVTIK   87 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~--~~~~~~~~~~~-~~~~~-~--~-~~~~~~~   87 (196)
                      ...+..+|++.|.|.+|||++|..+.+-..  +.++.+|-+.......  ....+...... ...+. +  + +..+...
T Consensus        19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~   98 (205)
T COG3896          19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILEL   98 (205)
T ss_pred             CCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHH
Confidence            344568999999999999999999987664  6677775544432111  11111000010 00010 0  0 1111111


Q ss_pred             HH---HHHH--HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           88 LL---QKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        88 ~~---~~~l--~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+   ...+  ....+..+|.|.+..+....--+.+.....+...|=+-+|.|+..+|-..|
T Consensus        99 ~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr  160 (205)
T COG3896          99 AMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRR  160 (205)
T ss_pred             HHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhc
Confidence            11   1111  111377788888665544333323213333445888899999999998776

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.76  E-value=3.1e-05  Score=52.38  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++|.|+|+.+|||||+++.|.+.+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999877

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.76  E-value=0.0014  Score=53.26  Aligned_cols=27  Identities=26%  Similarity=0.434  Sum_probs=24.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      +.-+++.|++|+||||+|+.+++.++.
T Consensus        35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC   61 (491)
T PRK14964         35 PQSILLVGASGVGKTTCARIISLCLNC   61 (491)
T ss_pred             CceEEEECCCCccHHHHHHHHHHHHcC
Confidence            557999999999999999999998864

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.76  E-value=3.6e-05  Score=44.06  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...+|.|++||||||+..++.--
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999888643

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=97.76  E-value=0.00054  Score=46.78  Aligned_cols=29  Identities=34%  Similarity=0.457  Sum_probs=25.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~   48 (196)
                      ..+.+.|.|+-.||||||+++|++.+|..
T Consensus         7 F~K~VailG~ESsGKStLv~kLA~~fnt~   35 (187)
T COG3172           7 FVKTVAILGGESSGKSTLVNKLANIFNTT   35 (187)
T ss_pred             hheeeeeecCcccChHHHHHHHHHHhCCC
Confidence            34689999999999999999999999863

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=3.5e-05  Score=63.85  Aligned_cols=35  Identities=23%  Similarity=0.421  Sum_probs=29.6

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ....++++++++||||+|||++++.+|+.++-.++
T Consensus       345 ~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv  379 (782)
T COG0466         345 TKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV  379 (782)
T ss_pred             hccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence            34556799999999999999999999999985443

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=97.74  E-value=3.2e-05  Score=61.26  Aligned_cols=29  Identities=17%  Similarity=0.354  Sum_probs=25.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ..++|.||||||||++|+.|++.++.++.
T Consensus       117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~  145 (413)
T TIGR00382       117 SNILLIGPTGSGKTLLAQTLARILNVPFA  145 (413)
T ss_pred             ceEEEECCCCcCHHHHHHHHHHhcCCCeE
Confidence            57999999999999999999999886554

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.74  E-value=3.2e-05  Score=58.10  Aligned_cols=26  Identities=23%  Similarity=0.479  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +..++|.|++||||||+++.+++.+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            45799999999999999999998875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.74  E-value=2.2e-05  Score=57.93  Aligned_cols=21  Identities=43%  Similarity=0.734  Sum_probs=18.6

Q ss_pred             EEcCCCCChHHHHHHHHHHhC
Q 029252           26 VLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        26 i~G~~gsGKsTla~~L~~~~~   46 (196)
                      |.||+||||||+++.+.+.+.
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~   21 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLE   21 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999774

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.73  E-value=5.9e-05  Score=55.16  Aligned_cols=39  Identities=21%  Similarity=0.231  Sum_probs=30.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL   56 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~   56 (196)
                      ...+..++|.|++||||||+++.+++...     ..+++..++.
T Consensus        35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence            34567899999999999999999998752     4566665554

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.00039  Score=56.18  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=29.9

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      ...-|+-|+++||||+|||-+|+.+|-.-+.+++.
T Consensus       333 GGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~  367 (752)
T KOG0734|consen  333 GGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFY  367 (752)
T ss_pred             cCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEe
Confidence            33457889999999999999999999988887765

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.73  E-value=0.00051  Score=58.95  Aligned_cols=33  Identities=24%  Similarity=0.496  Sum_probs=28.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ...+..++|.|+|||||||+++.+++.++..++
T Consensus       209 i~~~~giLL~GppGtGKT~laraia~~~~~~~i  241 (733)
T TIGR01243       209 IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFI  241 (733)
T ss_pred             CCCCceEEEECCCCCChHHHHHHHHHHhCCeEE
Confidence            345678999999999999999999999876544

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.73  E-value=0.0022  Score=52.64  Aligned_cols=28  Identities=18%  Similarity=0.207  Sum_probs=25.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+..++++||+|+||||+|+.+++.++.
T Consensus        37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   64 (509)
T PRK14958         37 LHHAYLFTGTRGVGKTTISRILAKCLNC   64 (509)
T ss_pred             CCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4567899999999999999999999875

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.73  E-value=3.3e-05  Score=56.17  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=22.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .++-++.|.|.|||||||+++.|+-
T Consensus        31 ~~Ge~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124          31 ERGETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhc
Confidence            4567899999999999999999985

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.73  E-value=7.2e-05  Score=55.10  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=22.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +++.+++|.|+|||||||++..++..
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~~~~~   48 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQFVYG   48 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHH
Confidence            45689999999999999999998654

>TIGR00101 ureG urease accessory protein UreG

Probab=97.72  E-value=3.9e-05  Score=55.10  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      |..|.|.|++||||||+++.+.+.+.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~   26 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALR   26 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence            46799999999999999999988763

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.72  E-value=0.00019  Score=56.41  Aligned_cols=109  Identities=28%  Similarity=0.418  Sum_probs=60.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh---CC-cEecHHHHHHHHHHcCCcchHHHHHHH--------HcC-CCCCHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKSGSENGTMIQNMI--------KEG-KIVPSEV   84 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~---~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~   84 (196)
                      ..+|.+|+++|.=||||||.|-+||..|   +. +.+...|++|...-      ++++..-        ..+ ..-|-++
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~------eQL~~La~q~~v~~f~~~~~~~Pv~I  170 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAI------EQLKQLAEQVGVPFFGSGTEKDPVEI  170 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHH------HHHHHHHHHcCCceecCCCCCCHHHH
Confidence            4568999999999999999999999877   32 33333465655311      1222111        111 1123334


Q ss_pred             HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhh----cCCCCcE-EEEEEcC
Q 029252           85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV----TKIEPEF-VLFFDCS  133 (196)
Q Consensus        85 ~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~----~~~~~~~-~i~l~~~  133 (196)
                      ....++.+-. ...+.+|+|-..+..-+-..+.++    ....|+. ++++|.-
T Consensus       171 ak~al~~ak~-~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam  223 (451)
T COG0541         171 AKAALEKAKE-EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAM  223 (451)
T ss_pred             HHHHHHHHHH-cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence            4444444332 236888999766554444444433    4455655 4455654

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.72  E-value=0.00073  Score=52.95  Aligned_cols=27  Identities=19%  Similarity=0.346  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.++++.||+||||||++..|+..+
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l  230 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQL  230 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999999766

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.72  E-value=0.0025  Score=53.35  Aligned_cols=28  Identities=18%  Similarity=0.211  Sum_probs=25.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+..++++||+|+||||+|+.+|+.++.
T Consensus        36 l~HAyLF~GPpGvGKTTlAriLAK~LnC   63 (702)
T PRK14960         36 LHHAYLFTGTRGVGKTTIARILAKCLNC   63 (702)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3578899999999999999999999875

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.72  E-value=2.8e-05  Score=60.07  Aligned_cols=24  Identities=38%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +.-++.|.|||||||||+.+.+|-
T Consensus        30 ~Gef~~lLGPSGcGKTTlLR~IAG   53 (352)
T COG3842          30 KGEFVTLLGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            456899999999999999999985

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.71  E-value=0.0025  Score=50.78  Aligned_cols=28  Identities=18%  Similarity=0.099  Sum_probs=24.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+.-+++.||+|+||||+|+.+++.+..
T Consensus        37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c   64 (397)
T PRK14955         37 VGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (397)
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3456899999999999999999999865

>COG3911 Predicted ATPase [General function prediction only]

Probab=97.71  E-value=3.7e-05  Score=51.66  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ++++|+|.||+||||+...|+++
T Consensus        10 ~~fIltGgpGaGKTtLL~aLa~~   32 (183)
T COG3911          10 KRFILTGGPGAGKTTLLAALARA   32 (183)
T ss_pred             eEEEEeCCCCCcHHHHHHHHHHc
Confidence            58999999999999999999875

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.70  E-value=3.4e-05  Score=51.95  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +.|++.|++|||||||++.|...
T Consensus         2 krimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCC
Confidence            35899999999999999999653

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.70  E-value=4.7e-05  Score=58.74  Aligned_cols=28  Identities=25%  Similarity=0.324  Sum_probs=24.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..++.+|.|.|+|||||||++..|...+
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999988766

>PRK04195 replication factor C large subunit; Provisional

Probab=97.70  E-value=5e-05  Score=61.89  Aligned_cols=30  Identities=20%  Similarity=0.579  Sum_probs=27.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      +..++|.||||+||||+++.|++.+++.++
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~i   68 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVI   68 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            678999999999999999999999986554

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.69  E-value=7.1e-05  Score=56.79  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +.-+++.|+||+||||+|+.+++.+
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHH
Confidence            3469999999999999998888765

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.69  E-value=5.2e-05  Score=58.32  Aligned_cols=27  Identities=37%  Similarity=0.666  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.++++.||+||||||++..|+..+
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            356899999999999999999999876

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.69  E-value=0.0017  Score=54.02  Aligned_cols=37  Identities=19%  Similarity=0.193  Sum_probs=29.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh-------CCcEecHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAE   59 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~-------~~~~~~~~d~~~~~   59 (196)
                      .++|.|++|+|||.|++.++..+       ...+++..+++...
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el  359 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF  359 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence            48999999999999999999865       23677777776554

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.68  E-value=4.9e-05  Score=55.97  Aligned_cols=27  Identities=26%  Similarity=0.533  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+..+|.|+|+||+||||+...|...+
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence            456899999999999999999999877

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=97.68  E-value=0.0016  Score=56.25  Aligned_cols=28  Identities=14%  Similarity=0.228  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+.-++|.|++|+||||+++.|++.++.
T Consensus        36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C   63 (824)
T PRK07764         36 INHAYLFSGPRGCGKTSSARILARSLNC   63 (824)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence            3456899999999999999999999974

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=97.68  E-value=0.0043  Score=49.57  Aligned_cols=38  Identities=21%  Similarity=0.286  Sum_probs=29.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh-----C--CcEecHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLRAE   59 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~-----~--~~~~~~~d~~~~~   59 (196)
                      ..++|.|++|+|||++++.+++.+     +  ..+++..++....
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~  181 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDF  181 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHH
Confidence            458999999999999999999865     2  4567777665543

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.68  E-value=0.00014  Score=54.56  Aligned_cols=90  Identities=20%  Similarity=0.251  Sum_probs=52.0

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhC----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCC-HHHHHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP-SEVTIKLLQK   91 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   91 (196)
                      ...+.-+|+++||.||||||-...+-+.+|    .-++...|.+.-.......       .+.....-. ..-+.+.++.
T Consensus       121 ~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skks-------lI~QREvG~dT~sF~~aLra  193 (353)
T COG2805         121 AESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKS-------LINQREVGRDTLSFANALRA  193 (353)
T ss_pred             HhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHh-------hhhHHHhcccHHHHHHHHHH
Confidence            344556899999999999998888888876    3456666665544322111       111111111 1223555666


Q ss_pred             HHHhcCCCeEEEeccCCCHHHHHH
Q 029252           92 AMEESGNDKFLIDGFPRNEENRAA  115 (196)
Q Consensus        92 ~l~~~~~~~~iidg~~~~~~~~~~  115 (196)
                      ++.+  ...+|+-|..+..+....
T Consensus       194 ALRe--DPDVIlvGEmRD~ETi~~  215 (353)
T COG2805         194 ALRE--DPDVILVGEMRDLETIRL  215 (353)
T ss_pred             Hhhc--CCCEEEEeccccHHHHHH
Confidence            6653  445666676666665544

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.67  E-value=5.9e-05  Score=55.66  Aligned_cols=34  Identities=6%  Similarity=0.183  Sum_probs=27.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGD   54 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d   54 (196)
                      ...++|.||+|||||++++.++....     ..++..++
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            35789999999999999999988653     45666655

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.67  E-value=4.7e-05  Score=56.62  Aligned_cols=26  Identities=35%  Similarity=0.567  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYT   48 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~   48 (196)
                      =+++.||||-||||+|..+|+.+|..
T Consensus        54 HvLl~GPPGlGKTTLA~IIA~Emgvn   79 (332)
T COG2255          54 HVLLFGPPGLGKTTLAHIIANELGVN   79 (332)
T ss_pred             eEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence            48999999999999999999999853

>PRK08116 hypothetical protein; Validated

Probab=97.67  E-value=0.00087  Score=50.43  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=30.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE   59 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~~   59 (196)
                      +..++|.|++|+|||.++..+++.+   +  ..+++..+++...
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i  157 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI  157 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            3469999999999999999999976   3  3456676666543

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=97.67  E-value=0.00051  Score=50.12  Aligned_cols=39  Identities=26%  Similarity=0.327  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh-------CCcEecHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEI   60 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~-------~~~~~~~~d~~~~~~   60 (196)
                      ..++|.|++|+|||.|++.+++.+       .+.+++.+++.....
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~   80 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFA   80 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHH
Confidence            347899999999999999998764       245777777766543

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00017  Score=52.99  Aligned_cols=54  Identities=17%  Similarity=0.371  Sum_probs=37.5

Q ss_pred             hcccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHHHHHHcCCcc
Q 029252           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSGSEN   66 (196)
Q Consensus        13 ~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~~~~~~~~~~~~   66 (196)
                      .....-.+|.-+++.||||+|||.+++.++.+-...++  .-+.++.+....++.+
T Consensus       181 y~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprm  236 (408)
T KOG0727|consen  181 YKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRM  236 (408)
T ss_pred             HHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHH
Confidence            34455667888999999999999999999987755444  3345555544444433

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=97.66  E-value=5.7e-05  Score=51.34  Aligned_cols=31  Identities=19%  Similarity=0.358  Sum_probs=24.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~   52 (196)
                      ..-++|.|+||+||||+|..|.++ ++..++.
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaD   44 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR-GHRLVAD   44 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEEC
Confidence            467999999999999999988765 5555543

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.66  E-value=6.3e-05  Score=52.66  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=23.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      ..+++.||+|+|||.+|+.|++.+..
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46899999999999999999999873

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.66  E-value=9.6e-05  Score=54.17  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=29.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLL   56 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~-----~~~~~~~~d~~   56 (196)
                      ...++|.|++|||||++++.+++..     ...+++..+..
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~   82 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL   82 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence            4578999999999999999999876     45667665543

>PHA02244 ATPase-like protein

Probab=97.66  E-value=3.7e-05  Score=59.69  Aligned_cols=33  Identities=30%  Similarity=0.453  Sum_probs=28.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d   54 (196)
                      .-++|.|+||||||++++.++..++.+++.+..
T Consensus       120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~  152 (383)
T PHA02244        120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA  152 (383)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence            347889999999999999999999977765543

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.66  E-value=6.4e-05  Score=56.61  Aligned_cols=27  Identities=33%  Similarity=0.620  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+|+++|++|+||||++..|+..+
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l   96 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKL   96 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            446789999999999999999999876

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.66  E-value=5.6e-05  Score=52.99  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++++.|+|||||||++..++..+
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~   24 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYL   24 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999998876

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=5.3e-05  Score=57.27  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~   52 (196)
                      +-.|++.||+|||||-+|+.||+.++.++--.
T Consensus        97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA  128 (408)
T COG1219          97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIA  128 (408)
T ss_pred             eccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence            45699999999999999999999999876544

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.64  E-value=0.00024  Score=53.25  Aligned_cols=34  Identities=15%  Similarity=0.201  Sum_probs=26.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSA   52 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~   52 (196)
                      ++..+++|.|+|||||||+|..++...   +  ..+++.
T Consensus        34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~   72 (259)
T TIGR03878        34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV   72 (259)
T ss_pred             ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            356899999999999999999987643   2  455554

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.64  E-value=0.0038  Score=52.02  Aligned_cols=28  Identities=14%  Similarity=0.228  Sum_probs=25.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+..+++.||+|+||||+|+.+++.++.
T Consensus        34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   61 (584)
T PRK14952         34 INHAYLFSGPRGCGKTSSARILARSLNC   61 (584)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4567899999999999999999998874

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.63  E-value=4.5e-05  Score=51.24  Aligned_cols=26  Identities=27%  Similarity=0.396  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +..+++|.|++||||||+.+.|+..+
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEccCCCccccceeeecccc
Confidence            45789999999999999999998654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.63  E-value=5.8e-05  Score=53.64  Aligned_cols=121  Identities=17%  Similarity=0.148  Sum_probs=57.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      ....++|.|++||||||+++.|...+.  ...+...+...-.........-....  ......+..-..+.+...+..  
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~lR~--   99 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRP--GNVEGSGEVTMADLLRSALRM--   99 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEec--CCCCCCCccCHHHHHHHHhcc--
Confidence            457899999999999999999987663  12222222111100000000000000  000001111224455555542  


Q ss_pred             CCeEEEeccCCCHHHHHHHHhhcCCCC-cEEEEEEcCHHHHHHHHhhc
Q 029252           98 NDKFLIDGFPRNEENRAAFEAVTKIEP-EFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ...+|+-|.-+..+....+........ .+.-.-..+......|+...
T Consensus       100 ~pd~i~igEir~~ea~~~~~a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~  147 (186)
T cd01130         100 RPDRIIVGEVRGGEALDLLQAMNTGHPGGMTTIHANSAEEALTRLELL  147 (186)
T ss_pred             CCCEEEEEccCcHHHHHHHHHHhcCCCCceeeecCCCHHHHHHHHHHH
Confidence            334455554455554444444333333 33444455667778898877

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.63  E-value=5.8e-05  Score=62.70  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=29.7

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      .+..++.+++||||-||||||+.+|++-|+.++.
T Consensus       323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvE  356 (877)
T KOG1969|consen  323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVE  356 (877)
T ss_pred             CCccceEEeecCCCCChhHHHHHHHHhcCceEEE
Confidence            3445789999999999999999999999987764

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.63  E-value=0.0065  Score=49.08  Aligned_cols=39  Identities=21%  Similarity=0.330  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh-------CCcEecHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEI   60 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~-------~~~~~~~~d~~~~~~   60 (196)
                      ..++|.|++|+|||++++.+++.+       ...+++.++++....
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~  176 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV  176 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence            459999999999999999999875       245677777666543

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.63  E-value=7.1e-05  Score=52.55  Aligned_cols=29  Identities=31%  Similarity=0.376  Sum_probs=24.6

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .-.+.-.++++|+|||||||+.+.+....
T Consensus        24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             eecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence            34456789999999999999999998755

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.63  E-value=5.8e-05  Score=55.90  Aligned_cols=28  Identities=29%  Similarity=0.376  Sum_probs=24.5

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -+.+.++.|.||.||||||+.+.++.-+
T Consensus        25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l   52 (258)
T COG1120          25 IPKGEITGILGPNGSGKSTLLKCLAGLL   52 (258)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            3456899999999999999999998755

>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]

Probab=97.63  E-value=0.00054  Score=48.26  Aligned_cols=35  Identities=29%  Similarity=0.560  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLR   57 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~------~~~~~~~d~~~   57 (196)
                      ++.+.|.|++||||+++.+.....      ..+++.||+.-
T Consensus         3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlm   43 (291)
T KOG4622|consen    3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLM   43 (291)
T ss_pred             eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence            578999999999999999875432      45666777663

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.62  E-value=0.00013  Score=51.47  Aligned_cols=40  Identities=28%  Similarity=0.444  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE   59 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~~   59 (196)
                      .+..++|.|++|+|||.+|..++..+   +  ..++...+++...
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l   90 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL   90 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence            45779999999999999999999765   2  5677888887765

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.00023  Score=53.34  Aligned_cols=46  Identities=28%  Similarity=0.451  Sum_probs=35.3

Q ss_pred             ccCchhh--hhcccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252            5 VETPVKE--ADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus         5 ~~~~~~~--~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      +|.|+.-  ..+.+.-.+|+-+++.|.||+|||-+|+++|+.-...++
T Consensus       201 vELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl  248 (440)
T KOG0726|consen  201 VELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL  248 (440)
T ss_pred             hcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh
Confidence            4555533  345677778899999999999999999999987665433

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=97.62  E-value=0.00049  Score=53.33  Aligned_cols=137  Identities=15%  Similarity=0.138  Sum_probs=66.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      ....|+|+|++||||||+++.|...+.  ..++...|...-.+............  ..+......-..+++...+...+
T Consensus       159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~--~~~~~~~~~~~~~ll~~~LR~~P  236 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLAS--KGGQGRAKVTTQDLIEACLRLRP  236 (332)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEec--CCCCCcCcCcHHHHHHHHhccCC
Confidence            356799999999999999999998775  34444444222111110000000000  00000001112556666665322


Q ss_pred             CCeEEEeccCCCHHHHHHHHhhcCCCC-cEEEEEEcCHHHHHHHHhhc-cCCCCCCcHHHHHHHH
Q 029252           98 NDKFLIDGFPRNEENRAAFEAVTKIEP-EFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRF  160 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~~~~~~~  160 (196)
                      .  +|+=|.-+..+....+..+....+ ...-.-.-+......|+... ..+....+.+.+...+
T Consensus       237 D--~IivGEiR~~ea~~~l~a~~tGh~G~~tTiHa~s~~~ai~Rl~~~~~~~~~~~~~~~~~~~i  299 (332)
T PRK13900        237 D--RIIVGELRGAEAFSFLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLGMPPDQIKKYI  299 (332)
T ss_pred             C--eEEEEecCCHHHHHHHHHHHcCCCcEEEEEecCCHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence            3  444444455554455554333333 23333344556666887755 2233334444554443

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.62  E-value=4.7e-05  Score=56.06  Aligned_cols=41  Identities=24%  Similarity=0.418  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEI   60 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~--~~d~~~~~~   60 (196)
                      .|+.|++.||||+|||.+|+.|+...+.+++.  ...++-+..
T Consensus       150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV  192 (368)
T COG1223         150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV  192 (368)
T ss_pred             CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence            46789999999999999999999998866554  444554443

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=97.61  E-value=6e-05  Score=51.90  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++.|.|++||||||++..|.+.+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999876

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.61  E-value=6.4e-05  Score=52.86  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=22.8

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .-.++.+++|.|++||||||+.+.+..
T Consensus        17 ~i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          17 SIPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            345568899999999999999998853

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.61  E-value=6.4e-05  Score=53.54  Aligned_cols=29  Identities=24%  Similarity=0.403  Sum_probs=24.2

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .-..+.+++|.|++||||||+++.++..+
T Consensus        14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        14 AAERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33456789999999999999999998644

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=97.61  E-value=0.0011  Score=56.08  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=26.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      +.-++|.|+||+||||+++.++..++..++.
T Consensus       185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~  215 (644)
T PRK10733        185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT  215 (644)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            4559999999999999999999999866543

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.60  E-value=6.5e-05  Score=54.52  Aligned_cols=27  Identities=30%  Similarity=0.396  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+++|.|++||||||+++.|+..+
T Consensus        25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          25 SAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998754

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.60  E-value=8.2e-05  Score=59.49  Aligned_cols=32  Identities=22%  Similarity=0.276  Sum_probs=26.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      .....++|.|+||+||||+++.+++.++..++
T Consensus        34 ~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~   65 (413)
T PRK13342         34 GRLSSMILWGPPGTGKTTLARIIAGATDAPFE   65 (413)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            34456888999999999999999998875443

>PHA02624 large T antigen; Provisional

Probab=97.60  E-value=9e-05  Score=60.89  Aligned_cols=34  Identities=26%  Similarity=0.275  Sum_probs=28.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~   52 (196)
                      ++..++++.|||||||||+++.|.+.++...+++
T Consensus       429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV  462 (647)
T PHA02624        429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV  462 (647)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence            4557999999999999999999999996555553

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.60  E-value=6.5e-05  Score=54.62  Aligned_cols=27  Identities=33%  Similarity=0.428  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.++.|.|++||||||+++.|+..+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998654

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.60  E-value=6.6e-05  Score=54.65  Aligned_cols=28  Identities=29%  Similarity=0.298  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.++.|.|++||||||+++.|+..+
T Consensus        27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          27 IEKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            3456789999999999999999998654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.60  E-value=6.4e-05  Score=61.52  Aligned_cols=28  Identities=21%  Similarity=0.488  Sum_probs=24.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .+.+++++.||||+||||+++.|++.+.
T Consensus       101 ~~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455        101 EKKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHHH
Confidence            3557999999999999999999998774

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.60  E-value=0.00012  Score=59.67  Aligned_cols=82  Identities=18%  Similarity=0.340  Sum_probs=47.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEec----HHHHHHHHHHcCCcchHHHHHHHHcCCC---------CC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLS----AGDLLRAEIKSGSENGTMIQNMIKEGKI---------VP   81 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~----~~d~~~~~~~~~~~~~~~~~~~~~~~~~---------~~   81 (196)
                      +..+++|.|+||+||||++.+++...   +  ..+++    .+.+.+....-+-    .+..+...+..         ..
T Consensus       262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~----~~~~~~~~g~l~~~~~~p~~~~  337 (484)
T TIGR02655       262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGI----DFEEMEQQGLLKIICAYPESAG  337 (484)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCC----ChHHHhhCCcEEEEEcccccCC
Confidence            56789999999999999999988754   2  45555    3444444422222    23333333211         01


Q ss_pred             HHHHHHHHHHHHHhcCCCeEEEec
Q 029252           82 SEVTIKLLQKAMEESGNDKFLIDG  105 (196)
Q Consensus        82 ~~~~~~~~~~~l~~~~~~~~iidg  105 (196)
                      .+.....+...+.+...+.+|||+
T Consensus       338 ~~~~~~~i~~~i~~~~~~~vvIDs  361 (484)
T TIGR02655       338 LEDHLQIIKSEIADFKPARIAIDS  361 (484)
T ss_pred             hHHHHHHHHHHHHHcCCCEEEEcC
Confidence            122344444555544567788886

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>COG2326 Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=0.0058  Score=44.89  Aligned_cols=145  Identities=13%  Similarity=0.110  Sum_probs=80.7

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   94 (196)
                      ...+.+|++.|..++||--..+.+.+.+|-   .++..          ..+..              .+.....+.+.+.
T Consensus        71 ~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval----------~aPt~--------------~E~~qwY~qRy~~  126 (270)
T COG2326          71 TGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVAL----------PAPTD--------------RERGQWYFQRYVA  126 (270)
T ss_pred             cCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeec----------CCCCh--------------HhhccHHHHHHHH
Confidence            445688999999999999999999999973   22222          11111              1111222333333


Q ss_pred             hcC--CCeEEEec-------------cCCCHHHHHHHHhh--------cCCCCcEEEEEEcCHHHHHHHHhhc---cCCC
Q 029252           95 ESG--NDKFLIDG-------------FPRNEENRAAFEAV--------TKIEPEFVLFFDCSEEEMERRILNR---NQGR  148 (196)
Q Consensus        95 ~~~--~~~~iidg-------------~~~~~~~~~~~~~~--------~~~~~~~~i~l~~~~~~~~~R~~~R---~~~r  148 (196)
                      ..+  +..+|+|.             |....++...+.++        ...-.-+-+||.++.++..+|+..|   ...+
T Consensus       127 ~lPa~GeiviFdRSwYnr~gVeRVmGfct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~~R~~dP~K~  206 (270)
T COG2326         127 HLPAAGEIVIFDRSWYNRAGVERVMGFCTPKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFLERRNDPLKQ  206 (270)
T ss_pred             hCCCCCeEEEechhhccccCeeeccccCCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHHHHhcCHHhc
Confidence            223  66677763             32222222222222        3333446899999999999999999   2223


Q ss_pred             CCCcHHHHHHHHHHHHhcchhHHHHHH----hcCcEEEEeCCC
Q 029252          149 EDDNVETIRKRFKVFLESSLPVVQYYE----AKGKVRKVIFCS  187 (196)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~id~~~  187 (196)
                      -..++..++.| ..+.+...+..+.+.    ..+++++|-++.
T Consensus       207 WKlSp~D~~~r-~~WddYt~A~~em~~~T~T~~APW~vV~add  248 (270)
T COG2326         207 WKLSPMDLESR-DRWDDYTKAKDEMFARTSTPEAPWYVVPADD  248 (270)
T ss_pred             cCCCHHHHHHH-HhHHHHHHHHHHHHhccCCCCCCeEEEeCCc
Confidence            34444444442 223333333333342    233788887764

>PRK10646 ADP-binding protein; Provisional

Probab=97.59  E-value=0.0001  Score=50.31  Aligned_cols=28  Identities=29%  Similarity=0.546  Sum_probs=25.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+.+|++.|.-|+||||+++.+++.++.
T Consensus        27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         27 GATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            3468999999999999999999999975

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.59  E-value=7.4e-05  Score=55.98  Aligned_cols=28  Identities=25%  Similarity=0.399  Sum_probs=25.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..++.+|.|+|+||+||||+...|..+|
T Consensus        48 tG~a~viGITG~PGaGKSTli~~L~~~l   75 (323)
T COG1703          48 TGNAHVIGITGVPGAGKSTLIEALGREL   75 (323)
T ss_pred             CCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence            3467899999999999999999999887

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.59  E-value=6.1e-05  Score=51.80  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +++|.|+||+||||++..++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            37899999999999999998876

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK13768 GTPase; Provisional

Probab=97.58  E-value=7.8e-05  Score=55.61  Aligned_cols=26  Identities=35%  Similarity=0.521  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++.++++.|++||||||++..++..+
T Consensus         1 ~~~~i~v~G~~G~GKTt~~~~~~~~l   26 (253)
T PRK13768          1 MMYIVFFLGTAGSGKTTLTKALSDWL   26 (253)
T ss_pred             CcEEEEEECCCCccHHHHHHHHHHHH
Confidence            45789999999999999999998766

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.58  E-value=8.4e-05  Score=56.32  Aligned_cols=26  Identities=31%  Similarity=0.523  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+.+|+|.||+||||||++..|+..+
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998765

>PRK13695 putative NTPase; Provisional

Probab=97.58  E-value=8.2e-05  Score=52.23  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +.|+|.|++||||||+++.++..+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999987765

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.58  E-value=7.4e-05  Score=54.07  Aligned_cols=28  Identities=32%  Similarity=0.392  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.+++|.|++||||||+++.|+..+
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          23 VEKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456889999999999999999998644

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.58  E-value=0.0048  Score=51.66  Aligned_cols=28  Identities=18%  Similarity=0.224  Sum_probs=25.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+..++++|++|+||||+++.+++.++.
T Consensus        37 l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC   64 (618)
T PRK14951         37 LHHAYLFTGTRGVGKTTVSRILAKSLNC   64 (618)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4567899999999999999999999875

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.58  E-value=8.2e-05  Score=48.58  Aligned_cols=22  Identities=27%  Similarity=0.447  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .|+|.|.+||||||+.+.|...
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~   22 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGG   22 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEECcCCCCHHHHHHHHhcC
Confidence            3899999999999999999864

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK06526 transposase; Provisional

Probab=97.58  E-value=0.00012  Score=54.48  Aligned_cols=39  Identities=23%  Similarity=0.296  Sum_probs=28.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRA   58 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~   58 (196)
                      .+..++|.||||+|||++|..++...   +  ..++...+++..
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~  140 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR  140 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence            34579999999999999999998764   3  233445454444

>cd04155 Arl3 Arl3 subfamily

Probab=97.58  E-value=7.8e-05  Score=52.00  Aligned_cols=28  Identities=18%  Similarity=0.297  Sum_probs=23.3

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +..+...|+|.|++||||||+.+.+...
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence            3344678999999999999999999753

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.58  E-value=7.6e-05  Score=54.04  Aligned_cols=28  Identities=32%  Similarity=0.441  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.++.|.|++||||||+++.|+..+
T Consensus        24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3456789999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.57  E-value=8.1e-05  Score=55.13  Aligned_cols=29  Identities=31%  Similarity=0.663  Sum_probs=26.0

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...+|.+|++.|+.||||||++++|..++
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl   43 (366)
T KOG1532|consen   15 AIQRPVIILVVGMAGSGKTTFMQRLNSHL   43 (366)
T ss_pred             cccCCcEEEEEecCCCCchhHHHHHHHHH
Confidence            35578999999999999999999998877

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.57  E-value=9.1e-05  Score=51.18  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +++.|.|.+||||||+++.|...+.
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~   26 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALS   26 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999873

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.57  E-value=7.7e-05  Score=52.52  Aligned_cols=27  Identities=26%  Similarity=0.423  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ....++.|.|++||||||+.+.++..+
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            456799999999999999999998644

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=97.57  E-value=0.0028  Score=53.21  Aligned_cols=28  Identities=18%  Similarity=0.198  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+..++++|++|+||||+|+.+++.++.
T Consensus        37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c   64 (647)
T PRK07994         37 LHHAYLFSGTRGVGKTTIARLLAKGLNC   64 (647)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            3456899999999999999999999875

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.57  E-value=7.7e-05  Score=53.79  Aligned_cols=28  Identities=18%  Similarity=0.268  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.++.|.|++||||||+.+.|+..+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          23 LYAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3456799999999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.56  E-value=8e-05  Score=54.05  Aligned_cols=28  Identities=25%  Similarity=0.437  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.++.|.|++||||||+++.++..+
T Consensus        25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        25 IRKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456789999999999999999998654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.56  E-value=8.4e-05  Score=53.87  Aligned_cols=28  Identities=43%  Similarity=0.424  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++.+++|.|++||||||+.+.|+..+
T Consensus        23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          23 VKKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456799999999999999999998654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.56  E-value=0.00028  Score=51.91  Aligned_cols=26  Identities=15%  Similarity=0.371  Sum_probs=20.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...+++|.|+|||||||+|.+++..+
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~~~   48 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAYGF   48 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45699999999999999976554433

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.56  E-value=9.9e-05  Score=59.79  Aligned_cols=28  Identities=18%  Similarity=0.260  Sum_probs=24.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+..+++.||||+||||+|+.+++.++.
T Consensus        35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         35 ISHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3456899999999999999999998864

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.55  E-value=8.3e-05  Score=54.81  Aligned_cols=28  Identities=32%  Similarity=0.507  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.+++|.|++||||||+++.|+..+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          23 VRRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456789999999999999999998654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.55  E-value=0.011  Score=47.75  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=28.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRA   58 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~-----~~~~~~~~d~~~~   58 (196)
                      .-++|.|++|+|||++++.++..+     ...+++.+++...
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~  183 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH  183 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH
Confidence            457899999999999999999875     2456666665443

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.55  E-value=8.3e-05  Score=55.07  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+++|.|++||||||+++.|+..+
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        26 NPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            456799999999999999999998644

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.55  E-value=0.0047  Score=51.79  Aligned_cols=29  Identities=17%  Similarity=0.095  Sum_probs=25.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~   48 (196)
                      -+.-+++.||+|+||||+|+.+++.++..
T Consensus        37 i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~   65 (620)
T PRK14954         37 VGHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (620)
T ss_pred             CCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            35569999999999999999999998763

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.55  E-value=8.7e-05  Score=53.85  Aligned_cols=28  Identities=29%  Similarity=0.261  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.+++|.|++||||||+++.|+..+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          23 VEPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456789999999999999999998644

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK04296 thymidine kinase; Provisional

Probab=97.55  E-value=9.1e-05  Score=52.82  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +..+++++|+||+||||++..++.++
T Consensus         1 ~g~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          1 MAKLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             CcEEEEEECCCCCHHHHHHHHHHHHH
Confidence            35689999999999999999998876

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.55  E-value=8e-05  Score=54.35  Aligned_cols=28  Identities=32%  Similarity=0.451  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++.+++|.|++||||||+++.|+..+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          23 VPEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456899999999999999999998644

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.55  E-value=7.6e-05  Score=55.02  Aligned_cols=28  Identities=25%  Similarity=0.307  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++.+++|.|++||||||+++.|+..+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          23 VRPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            3456789999999999999999998644

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=97.54  E-value=9e-05  Score=58.36  Aligned_cols=27  Identities=30%  Similarity=0.417  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +|.+|.|+|.+||||||++..|.+.+.
T Consensus         4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~   30 (369)
T PRK14490          4 HPFEIAFCGYSGSGKTTLITALVRRLS   30 (369)
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            578999999999999999999998875

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.54  E-value=8.8e-05  Score=54.83  Aligned_cols=28  Identities=21%  Similarity=0.307  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++-+++|.|++||||||+++.|+.-+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          24 INPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3456799999999999999999998644

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=5.9e-05  Score=57.93  Aligned_cols=40  Identities=23%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAE   59 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~--~~d~~~~~   59 (196)
                      ++..|++.||||+|||.+|++++++-+..+++  ++.+..++
T Consensus       126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW  167 (386)
T KOG0737|consen  126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW  167 (386)
T ss_pred             CCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence            56789999999999999999999999876654  33334344

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=97.54  E-value=9.8e-05  Score=50.88  Aligned_cols=27  Identities=22%  Similarity=0.284  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +.+++.++|.++||||||..+|.+.+.
T Consensus         1 m~~Il~ivG~k~SGKTTLie~lv~~L~   27 (161)
T COG1763           1 MMKILGIVGYKNSGKTTLIEKLVRKLK   27 (161)
T ss_pred             CCcEEEEEecCCCChhhHHHHHHHHHH
Confidence            357899999999999999999998873

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.54  E-value=9.7e-05  Score=52.08  Aligned_cols=28  Identities=32%  Similarity=0.372  Sum_probs=23.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.+..++.|.|++||||||+++.|+..+
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          23 IEAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456789999999999999999998543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.0001  Score=61.21  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=30.1

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCC--cEecH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSA   52 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~--~~~~~   52 (196)
                      +...+++++++||||.|||++++.+|+.+|-  ..|+.
T Consensus       434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSv  471 (906)
T KOG2004|consen  434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSV  471 (906)
T ss_pred             ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEec
Confidence            3456799999999999999999999999984  44444

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.54  E-value=0.00011  Score=53.18  Aligned_cols=31  Identities=23%  Similarity=0.426  Sum_probs=26.4

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .....+++|.+.|++||||||+.+.+.+.++
T Consensus        17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4455678999999999999999999988754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.54  E-value=0.0023  Score=49.53  Aligned_cols=38  Identities=21%  Similarity=0.336  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE   59 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~~   59 (196)
                      ..++|.|++|+|||.++..++..+   +  +.+++..+++...
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l  226 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL  226 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence            669999999999999999999876   2  4566777766554

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.54  E-value=8.5e-05  Score=54.19  Aligned_cols=27  Identities=26%  Similarity=0.265  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.++.|.|++||||||+++.|+..+
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          28 EEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.54  E-value=8.1e-05  Score=54.00  Aligned_cols=28  Identities=29%  Similarity=0.413  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.++.|.|++||||||+++.|+..+
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          22 VKPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3456789999999999999999998654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.54  E-value=9.4e-05  Score=53.63  Aligned_cols=27  Identities=30%  Similarity=0.302  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.++.|.|++||||||+++.|+..+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          24 ADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.53  E-value=9.4e-05  Score=54.22  Aligned_cols=28  Identities=21%  Similarity=0.281  Sum_probs=24.6

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++.++.|.|++||||||+++.|+..+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          23 IPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3466899999999999999999999765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=97.53  E-value=0.00067  Score=53.29  Aligned_cols=116  Identities=23%  Similarity=0.152  Sum_probs=57.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (196)
                      -+++|+|++||||||+++.|.+.++     ..++..+|...-.+..........+..+  +...  .-+...+...+.. 
T Consensus       150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~ev--g~~~--~~~~~~l~~aLR~-  224 (372)
T TIGR02525       150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQI--GRDV--DSFANGIRLALRR-  224 (372)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeeccccccc--CCCc--cCHHHHHHHhhcc-
Confidence            4789999999999999999988763     2355555544433221110000000000  1100  1234555555553 


Q ss_pred             CCCeEEEeccCCCHHHHHH-HHhhcCCCCcEEEEEEcCHHHHHHHHhh
Q 029252           97 GNDKFLIDGFPRNEENRAA-FEAVTKIEPEFVLFFDCSEEEMERRILN  143 (196)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~R~~~  143 (196)
                       .-.+|+-|.-+..+.... +......+..+.-.-.-+......|+..
T Consensus       225 -~PD~I~vGEiRd~et~~~al~aa~TGH~v~tTlHa~s~~~ai~Rl~~  271 (372)
T TIGR02525       225 -APKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISRCLQ  271 (372)
T ss_pred             -CCCEEeeCCCCCHHHHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHHH
Confidence             334555555566655543 3222222222222334455566666654

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>TIGR02012 tigrfam_recA protein RecA

Probab=97.53  E-value=0.00063  Score=52.30  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=26.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGD   54 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d   54 (196)
                      ++..++.|.|+|||||||+|..++...   +  ..+++...
T Consensus        53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~   93 (321)
T TIGR02012        53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH   93 (321)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence            456799999999999999988877654   2  34565543

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.53  E-value=9.7e-05  Score=51.83  Aligned_cols=27  Identities=30%  Similarity=0.341  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+..+++|.|++||||||+++.|+..+
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998644

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=97.53  E-value=0.0059  Score=50.80  Aligned_cols=28  Identities=14%  Similarity=0.152  Sum_probs=24.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+.-+++.||+|+||||+|+.+++.+..
T Consensus        37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~C   64 (605)
T PRK05896         37 LTHAYIFSGPRGIGKTSIAKIFAKAINC   64 (605)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3567999999999999999999999853

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.53  E-value=9.4e-05  Score=53.91  Aligned_cols=27  Identities=26%  Similarity=0.331  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+-+++|.|++||||||+++.|+.-+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          26 YKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=97.53  E-value=8.1e-05  Score=58.76  Aligned_cols=25  Identities=28%  Similarity=0.639  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..-|+|.|+||+||||+|+.||+-+
T Consensus       263 aeGILIAG~PGaGKsTFaqAlAefy  287 (604)
T COG1855         263 AEGILIAGAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             hcceEEecCCCCChhHHHHHHHHHH
Confidence            4569999999999999999999876

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.53  E-value=9.7e-05  Score=53.89  Aligned_cols=28  Identities=29%  Similarity=0.322  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++.++.|.|++||||||+.+.|+..+
T Consensus        28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        28 IGKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3466799999999999999999998654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.52  E-value=9.8e-05  Score=54.47  Aligned_cols=28  Identities=29%  Similarity=0.446  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++.+++|.|++||||||+++.|+..+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        24 VRPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3466899999999999999999998643

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.52  E-value=9.7e-05  Score=54.59  Aligned_cols=28  Identities=32%  Similarity=0.309  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.++.|.|++||||||+++.|+..+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          25 IPSGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456889999999999999999998644

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.52  E-value=9.8e-05  Score=54.32  Aligned_cols=28  Identities=29%  Similarity=0.296  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.+.-+++|.|++||||||+++.|+..+
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          28 VPKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456799999999999999999998755

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.52  E-value=0.0043  Score=51.93  Aligned_cols=28  Identities=14%  Similarity=0.221  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+..++++|++|+||||+++.+++.++.
T Consensus        37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c   64 (585)
T PRK14950         37 VAHAYLFTGPRGVGKTSTARILAKAVNC   64 (585)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3567899999999999999999998864

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.52  E-value=0.00011  Score=51.35  Aligned_cols=24  Identities=29%  Similarity=0.627  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +++|.|++|||||++|..++...+
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~   24 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELG   24 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcC
Confidence            478999999999999999987754

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.52  E-value=0.00011  Score=51.25  Aligned_cols=28  Identities=18%  Similarity=0.399  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.+..+++|.|++||||||+++.++..+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          24 IKPGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3456799999999999999999998754

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.52  E-value=9e-05  Score=53.69  Aligned_cols=25  Identities=24%  Similarity=0.198  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .. +++|.|++||||||+++.++..+
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            35 89999999999999999998644

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.51  E-value=0.0001  Score=53.56  Aligned_cols=27  Identities=26%  Similarity=0.213  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ....+++|.|++||||||+.+.++.-.
T Consensus        11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         11 GYHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            456789999999999999999998643

>PLN03025 replication factor C subunit; Provisional

Probab=97.51  E-value=0.00011  Score=56.68  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +-+++.||||+||||+++.+++.+
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            347889999999999999999987

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.51  E-value=0.0001  Score=54.27  Aligned_cols=27  Identities=22%  Similarity=0.230  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+-+++|.|++||||||+++.|+..+
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         33 GEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998654

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00015  Score=53.62  Aligned_cols=61  Identities=20%  Similarity=0.428  Sum_probs=41.6

Q ss_pred             ccCchhhhh--cccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHHHHHHHcCCc
Q 029252            5 VETPVKEAD--ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEIKSGSE   65 (196)
Q Consensus         5 ~~~~~~~~~--~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~--~~d~~~~~~~~~~~   65 (196)
                      +|.|+-.++  -.+.-.+|+-|++.||||+|||-+|+.++++-+..++.  -+.++.+.+..+..
T Consensus       193 ve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegar  257 (435)
T KOG0729|consen  193 VELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGAR  257 (435)
T ss_pred             HhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHH
Confidence            445543333  23445577889999999999999999999998876653  34555555444433

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.51  E-value=0.00011  Score=53.89  Aligned_cols=28  Identities=18%  Similarity=0.306  Sum_probs=23.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++-+++|.|++||||||+++.|+.-.
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         30 LRAGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3456789999999999999999998643

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.51  E-value=0.0001  Score=53.13  Aligned_cols=27  Identities=30%  Similarity=0.256  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.++.|.|++||||||+.+.|+..+
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        22 EKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            356789999999999999999998654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00043  Score=58.14  Aligned_cols=32  Identities=22%  Similarity=0.421  Sum_probs=28.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~   52 (196)
                      .--|++.||||+|||-+||++|..+...+++.
T Consensus       705 RSGILLYGPPGTGKTLlAKAVATEcsL~FlSV  736 (953)
T KOG0736|consen  705 RSGILLYGPPGTGKTLLAKAVATECSLNFLSV  736 (953)
T ss_pred             cceeEEECCCCCchHHHHHHHHhhceeeEEee
Confidence            34699999999999999999999998877763

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.51  E-value=0.00011  Score=53.63  Aligned_cols=27  Identities=22%  Similarity=0.367  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+-+++|.|++||||||+.+.|+..+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          24 RRGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.50  E-value=0.0001  Score=54.01  Aligned_cols=28  Identities=32%  Similarity=0.463  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.+++|.|++||||||+++.|+..+
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          28 IKKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456899999999999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.50  E-value=0.00037  Score=56.89  Aligned_cols=34  Identities=18%  Similarity=0.189  Sum_probs=25.4

Q ss_pred             hhhhcccC--CCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           10 KEADATVT--VKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        10 ~~~~~~~~--~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +.++..+.  -.+...++|.|+|||||||+|..++-
T Consensus         8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~   43 (484)
T TIGR02655         8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY   43 (484)
T ss_pred             hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            33444433  34568999999999999999998743

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.50  E-value=0.00011  Score=51.70  Aligned_cols=28  Identities=29%  Similarity=0.421  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++.++.|.|++||||||+++.|+...
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          25 LKQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3456789999999999999999998754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.50  E-value=0.00012  Score=51.38  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.++.|.|++||||||+++.|+..+
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          25 IEPGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3456789999999999999999998754

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.50  E-value=0.00011  Score=54.93  Aligned_cols=28  Identities=29%  Similarity=0.390  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++-+++|.|++||||||+++.|+..+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         24 LESGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456889999999999999999998643

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.50  E-value=0.00011  Score=52.56  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=22.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .+..++.|.|++||||||+++.|+.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          31 KPGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhC
Confidence            4567999999999999999999985

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.50  E-value=0.00013  Score=51.34  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=23.0

Q ss_pred             CCC-cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKP-TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~-~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++ ..|.+.|+||||||++..++.+.+
T Consensus        10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L   37 (202)
T COG0378          10 NRPMLRIGVGGPPGSGKTALIEKTLRAL   37 (202)
T ss_pred             cCceEEEEecCCCCcCHHHHHHHHHHHH
Confidence            345 689999999999999988887776

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.49  E-value=0.00011  Score=54.40  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+++|.|++||||||+++.|+..+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         27 EGGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998654

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.49  E-value=0.00044  Score=54.19  Aligned_cols=27  Identities=26%  Similarity=0.463  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ++.+|+++||.|+||||-..+||.++.
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~  228 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYV  228 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence            378999999999999998888988774

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.49  E-value=0.00013  Score=58.86  Aligned_cols=32  Identities=22%  Similarity=0.494  Sum_probs=28.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      .+..+.+|+||+||||||..+.|++.+|+.++
T Consensus       108 l~~~iLLltGPsGcGKSTtvkvLskelg~~~~  139 (634)
T KOG1970|consen  108 LGSRILLLTGPSGCGKSTTVKVLSKELGYQLI  139 (634)
T ss_pred             CCceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence            34578999999999999999999999997665

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.49  E-value=0.00012  Score=57.63  Aligned_cols=28  Identities=18%  Similarity=0.215  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+..+++.||+|+||||+|+.+++.++.
T Consensus        37 ~~h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         37 IHHAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            4567899999999999999999998863

>PRK09183 transposase/IS protein; Provisional

Probab=97.49  E-value=0.00023  Score=53.31  Aligned_cols=37  Identities=27%  Similarity=0.376  Sum_probs=27.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLL   56 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~   56 (196)
                      ....++|.|+||+|||+++..++...   +  ..+++..++.
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~  142 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL  142 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence            34578899999999999999997653   3  3445555544

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.49  E-value=0.00012  Score=52.43  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++-+++|.|++||||||+++.|+..+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         24 LPSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998754

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.49  E-value=0.00011  Score=53.92  Aligned_cols=27  Identities=37%  Similarity=0.405  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++-+++|.|++||||||+++.|+..+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          24 KQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998643

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.48  E-value=0.00012  Score=59.37  Aligned_cols=27  Identities=41%  Similarity=0.720  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +|.++.+.||||+|||||.+.|.+++.
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~t   94 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFT   94 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHH
Confidence            345667999999999999999999874

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.48  E-value=0.00011  Score=54.34  Aligned_cols=26  Identities=38%  Similarity=0.551  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..+-+++|.|++||||||+++.|+..
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        24 KKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999865

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.48  E-value=0.00013  Score=57.06  Aligned_cols=27  Identities=26%  Similarity=0.425  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+++|.||+|+||||++.+|+..+
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            345789999999999999999999764

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.48  E-value=0.00011  Score=50.86  Aligned_cols=29  Identities=28%  Similarity=0.450  Sum_probs=24.8

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+-|+++.|++||||||+.+.|...+
T Consensus        33 sV~aGECvvL~G~SG~GKStllr~LYaNY   61 (235)
T COG4778          33 SVNAGECVVLHGPSGSGKSTLLRSLYANY   61 (235)
T ss_pred             EecCccEEEeeCCCCCcHHHHHHHHHhcc
Confidence            34456799999999999999999998766

>CHL00206 ycf2 Ycf2; Provisional

Probab=97.48  E-value=0.00011  Score=67.13  Aligned_cols=40  Identities=13%  Similarity=0.234  Sum_probs=32.6

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLR   57 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~~~   57 (196)
                      ...|.-|++.||||+|||.+|++||...+++++  +..+++.
T Consensus      1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            345678999999999999999999999886654  5566654

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.48  E-value=0.00013  Score=51.56  Aligned_cols=28  Identities=25%  Similarity=0.409  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++.+++|.|++||||||+++.++..+
T Consensus        22 i~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          22 IEAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3466799999999999999999998654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.47  E-value=0.001  Score=51.25  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=26.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG   53 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~   53 (196)
                      ++..++.|.|+|||||||+|..++...   +  ..+++..
T Consensus        53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E   92 (325)
T cd00983          53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE   92 (325)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence            356789999999999999999887543   2  4556543

RecA couples ATP hydrolysis to DNA strand exchange.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.47  E-value=0.00011  Score=52.77  Aligned_cols=23  Identities=26%  Similarity=0.228  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..+++|+|++||||||+++.++-
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHH
Confidence            47899999999999999999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.47  E-value=0.00012  Score=53.75  Aligned_cols=28  Identities=36%  Similarity=0.436  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++-+++|.|++||||||+++.|+..+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        23 VPKGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456899999999999999999998654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.47  E-value=0.00012  Score=54.61  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .++.+++|.|++||||||+++.|+..
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         30 EQNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            45678999999999999999999853

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.47  E-value=0.00017  Score=48.65  Aligned_cols=29  Identities=34%  Similarity=0.491  Sum_probs=26.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      ..+.+|++.|.-||||||+++.+++.++.
T Consensus        23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802          23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            45689999999999999999999999973

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.47  E-value=0.00013  Score=50.67  Aligned_cols=28  Identities=29%  Similarity=0.427  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++-++.|.|++||||||+.+.++...
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          23 VRRGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456789999999999999999998643

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.47  E-value=0.00013  Score=54.08  Aligned_cols=27  Identities=19%  Similarity=0.222  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++-++.|.|++||||||+++.|+..+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         26 PQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998654

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.47  E-value=0.00011  Score=47.91  Aligned_cols=20  Identities=30%  Similarity=0.518  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHHHH
Q 029252           24 VFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~   43 (196)
                      |+|.|.+|+||||+.+.|..
T Consensus         2 V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999985

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=97.46  E-value=0.00056  Score=55.60  Aligned_cols=29  Identities=17%  Similarity=0.248  Sum_probs=25.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~   49 (196)
                      ..-+++.|+-|+||||+|+.+|+.++...
T Consensus        38 ~hAYlfsG~RGvGKTt~Ari~AkalNC~~   66 (515)
T COG2812          38 AHAYLFSGPRGVGKTTIARILAKALNCEN   66 (515)
T ss_pred             hhhhhhcCCCCcCchhHHHHHHHHhcCCC
Confidence            45589999999999999999999998654

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.46  E-value=0.00013  Score=51.66  Aligned_cols=27  Identities=15%  Similarity=0.177  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+++|.|++||||||+++.|+..+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          24 RAGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.46  E-value=0.00013  Score=52.67  Aligned_cols=27  Identities=33%  Similarity=0.354  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+++|.|++||||||+.+.++..+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          24 KKGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            456889999999999999999998643

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=97.46  E-value=0.00013  Score=53.99  Aligned_cols=29  Identities=28%  Similarity=0.391  Sum_probs=24.4

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .-.++.++.|.|++||||||+++.|+..+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          23 EIAKGEFLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33466789999999999999999998644

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=97.46  E-value=0.012  Score=41.84  Aligned_cols=27  Identities=15%  Similarity=0.174  Sum_probs=24.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      -+..+++.|++|+||||+++.+++.+.
T Consensus        13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~   39 (188)
T TIGR00678        13 LAHAYLFAGPEGVGKELLALALAKALL   39 (188)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence            457899999999999999999999874

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.46  E-value=0.00014  Score=52.28  Aligned_cols=28  Identities=21%  Similarity=0.278  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++-+++|.|++||||||+++.++...
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3466899999999999999999998654

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.46  E-value=0.00017  Score=52.16  Aligned_cols=27  Identities=30%  Similarity=0.556  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++..++.|.|+||||||++|..++...
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~   36 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVNA   36 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999988654

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.46  E-value=0.00017  Score=55.26  Aligned_cols=27  Identities=26%  Similarity=0.343  Sum_probs=24.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+|.|.|++||||||++..|+..+
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            457889999999999999999998865

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.46  E-value=0.0001  Score=57.18  Aligned_cols=27  Identities=22%  Similarity=0.367  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ....|+|.|++||||||+++.|...++
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcccC
Confidence            357799999999999999999998774

>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2

Probab=97.46  E-value=0.00011  Score=50.02  Aligned_cols=30  Identities=33%  Similarity=0.680  Sum_probs=23.2

Q ss_pred             cCCC-CcEEEEEEcCHHHHHHHHhhccCCCCCC
Q 029252          120 TKIE-PEFVLFFDCSEEEMERRILNRNQGREDD  151 (196)
Q Consensus       120 ~~~~-~~~~i~l~~~~~~~~~R~~~R~~~r~~~  151 (196)
                      .... |+++|||++|+++|.+|+.+|  ||+.+
T Consensus        63 ~~~~~pdl~IYL~~~~e~~~~RI~kR--gR~~E   93 (146)
T PF01712_consen   63 EIPKSPDLIIYLDASPETCLERIKKR--GREEE   93 (146)
T ss_dssp             HCCHH-SEEEEEE--HHHHHHHHHHC--TTGGG
T ss_pred             HhhccCCeEEEEeCCHHHHHHHHHHh--CCchh
Confidence            4556 999999999999999999999  77654

7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.46  E-value=0.00013  Score=53.04  Aligned_cols=27  Identities=30%  Similarity=0.320  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...-+++|.|++||||||+.+.|+.-+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          29 KPGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            456789999999999999999998644

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.46  E-value=0.00014  Score=49.52  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.+..++.|.|++||||||+++.|+..+
T Consensus        23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          23 INPGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3456789999999999999999998654

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.46  E-value=0.00013  Score=54.27  Aligned_cols=27  Identities=26%  Similarity=0.325  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+++|.|++||||||+++.|+..+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         27 PDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            456789999999999999999998653

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.46  E-value=0.00013  Score=53.46  Aligned_cols=28  Identities=25%  Similarity=0.451  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.++.|.|++||||||+.+.|+..+
T Consensus        26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          26 IKPGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            3456789999999999999999998654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=97.46  E-value=0.006  Score=51.81  Aligned_cols=30  Identities=17%  Similarity=0.257  Sum_probs=25.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~   48 (196)
                      ..+..+++.||+|+||||+|+.+++.+...
T Consensus        38 rl~HAYLF~GP~GtGKTt~AriLAk~LnC~   67 (725)
T PRK07133         38 KISHAYLFSGPRGTGKTSVAKIFANALNCS   67 (725)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence            346778999999999999999999988653

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.46  E-value=0.00014  Score=53.40  Aligned_cols=27  Identities=30%  Similarity=0.366  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++-++.|.|++||||||+++.++..+
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         34 KRGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            456899999999999999999998654

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.45  E-value=0.00012  Score=52.73  Aligned_cols=28  Identities=39%  Similarity=0.546  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++.+++|.|++||||||+++.|+..+
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233          30 VKPGEMVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence            3456799999999999999999998654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=97.45  E-value=0.00013  Score=53.61  Aligned_cols=27  Identities=33%  Similarity=0.614  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+++|.|++||||||+++.|+..+
T Consensus        10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        10 KRGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998644

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.45  E-value=0.00013  Score=54.19  Aligned_cols=27  Identities=37%  Similarity=0.303  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.++.|.|++||||||+++.|+..+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         27 KPGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998654

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.45  E-value=0.00015  Score=50.78  Aligned_cols=29  Identities=31%  Similarity=0.454  Sum_probs=24.7

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .-.+..++.|.|++||||||+.+.++..+
T Consensus        24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            33456899999999999999999998754

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00763 lon ATP-dependent protease La

Probab=97.45  E-value=0.00017  Score=62.06  Aligned_cols=31  Identities=23%  Similarity=0.448  Sum_probs=26.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ++..+++.||||+||||+|+.+++.++..++
T Consensus       346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~  376 (775)
T TIGR00763       346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFV  376 (775)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence            4457999999999999999999999975443

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.45  E-value=0.00014  Score=50.77  Aligned_cols=25  Identities=32%  Similarity=0.418  Sum_probs=22.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...-++.|.|+|||||||+...+|-
T Consensus        23 ~~ge~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          23 PAGEIVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHh
Confidence            4557899999999999999999985

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=97.45  E-value=0.00013  Score=54.43  Aligned_cols=27  Identities=26%  Similarity=0.353  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+++|.|++||||||+++.|+..+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        27 YPGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456899999999999999999998754

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=97.45  E-value=0.00013  Score=54.60  Aligned_cols=27  Identities=26%  Similarity=0.378  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++-+++|.|++||||||+++.|+..+
T Consensus        37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         37 AKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            456789999999999999999998543

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.45  E-value=0.00014  Score=53.48  Aligned_cols=27  Identities=22%  Similarity=0.284  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++-++.|.|++||||||+++.|+..+
T Consensus         9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184         9 QQGEFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998644

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK10908 cell division protein FtsE; Provisional

Probab=97.44  E-value=0.00014  Score=53.06  Aligned_cols=28  Identities=25%  Similarity=0.332  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.+++|.|++||||||+++.|+..+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         25 MRPGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3466899999999999999999998654

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=97.44  E-value=0.00013  Score=54.49  Aligned_cols=27  Identities=22%  Similarity=0.368  Sum_probs=23.5

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      -.++-++.|.|++||||||+++.|+..
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~laGl   53 (258)
T PRK14241         27 IEPRSVTAFIGPSGCGKSTVLRTLNRM   53 (258)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            345689999999999999999999964

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=97.44  E-value=0.00013  Score=52.18  Aligned_cols=24  Identities=21%  Similarity=0.484  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .-++|.|+||||||++|+.+..-+
T Consensus        23 h~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen   23 HHLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             --EEEES-CCCTHHHHHHHHHHCS
T ss_pred             CCeEEECCCCCCHHHHHHHHHHhC
Confidence            569999999999999999998755

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.44  E-value=0.00014  Score=54.89  Aligned_cols=30  Identities=27%  Similarity=0.440  Sum_probs=25.6

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +......++.|.|+||||||||++.+.+.+
T Consensus        99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l  128 (290)
T PRK10463         99 FAARKQLVLNLVSSPGSGKTTLLTETLMRL  128 (290)
T ss_pred             HHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            344567899999999999999999998876

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.44  E-value=0.00016  Score=55.69  Aligned_cols=28  Identities=25%  Similarity=0.476  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+..+++.|+||+||||+++.+++.++.
T Consensus        42 ~~~~lll~G~~G~GKT~la~~l~~~~~~   69 (316)
T PHA02544         42 IPNMLLHSPSPGTGKTTVAKALCNEVGA   69 (316)
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCc
Confidence            4567888999999999999999998764

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.44  E-value=0.0055  Score=49.70  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=29.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh-----C--CcEecHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLRA   58 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~-----~--~~~~~~~d~~~~   58 (196)
                      ..++|.|++|+|||++++.+++.+     +  ..+++..++...
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~  192 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND  192 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence            458999999999999999999876     2  346677666544

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.44  E-value=0.00014  Score=53.79  Aligned_cols=28  Identities=32%  Similarity=0.372  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++.+++|.|++||||||+++.|+..+
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         26 VNSGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3466899999999999999999998754

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.44  E-value=0.00014  Score=54.38  Aligned_cols=27  Identities=26%  Similarity=0.234  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++-+++|.|++||||||+++.|+..+
T Consensus        36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         36 PAGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998654

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=97.44  E-value=0.00014  Score=53.29  Aligned_cols=28  Identities=36%  Similarity=0.471  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -....++.|.|++||||||+++.|+..+
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234          30 VESGQVMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence            3456789999999999999999998654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd01394 radB RadB

Probab=97.44  E-value=0.00018  Score=52.40  Aligned_cols=27  Identities=30%  Similarity=0.453  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+..++.|.|+|||||||+|..++...
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~   43 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVET   43 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456889999999999999999998765

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.44  E-value=0.00016  Score=55.68  Aligned_cols=25  Identities=28%  Similarity=0.521  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...|+|+|++||||||+++.|...+
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999999876

>PRK08181 transposase; Validated

Probab=97.44  E-value=0.00032  Score=52.71  Aligned_cols=40  Identities=28%  Similarity=0.402  Sum_probs=30.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE   59 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~~   59 (196)
                      ....++|.|+||+|||.++..++...   +  ..+++..+++...
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l  149 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL  149 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence            34569999999999999999998754   3  4566777766654

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=97.44  E-value=0.00014  Score=53.47  Aligned_cols=28  Identities=32%  Similarity=0.434  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.+++|.|++||||||+++.|+..+
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (232)
T PRK10771         22 VERGERVAILGPSGAGKSTLLNLIAGFL   49 (232)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3456899999999999999999998643

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.43  E-value=0.00014  Score=54.15  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++-++.|.|++||||||+++.|+..+
T Consensus        27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         27 IPQNGVFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3456789999999999999999998653

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=97.43  E-value=0.00015  Score=52.86  Aligned_cols=28  Identities=25%  Similarity=0.395  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++.++.|.|++||||||+++.|+...
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          27 IRAGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            3466899999999999999999998654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.43  E-value=0.00015  Score=52.34  Aligned_cols=27  Identities=26%  Similarity=0.258  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.++.|.|++||||||+++.++...
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         26 AAGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456899999999999999999998754

>PRK06851 hypothetical protein; Provisional

Probab=97.43  E-value=0.00025  Score=55.41  Aligned_cols=28  Identities=36%  Similarity=0.591  Sum_probs=24.5

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .....+++|.|+||+||||+++.+.+.+
T Consensus        27 ~~~~~~~il~G~pGtGKStl~~~i~~~~   54 (367)
T PRK06851         27 DGANRIFILKGGPGTGKSTLMKKIGEEF   54 (367)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999998876

>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]

Probab=97.43  E-value=0.0048  Score=48.84  Aligned_cols=153  Identities=13%  Similarity=0.221  Sum_probs=85.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCC-----cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH---HHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLL   89 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   89 (196)
                      ...+.+|+++|.|++|||.++..+.+.+++     .+++.+.+-+........ ...+......+..+..++.   ..-+
T Consensus        25 ~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s-~~ff~p~n~~~~~lr~~~a~~~l~D~  103 (438)
T KOG0234|consen   25 MGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDS-EPFFLPDNAEASKLRKQLALLALNDL  103 (438)
T ss_pred             cCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhccccc-ccccccCChhhhhhhHHHHHHHhhhH
Confidence            345789999999999999999999987754     456666555554332211 0000000011111222222   2222


Q ss_pred             HHHHHhcCCCeEEEeccCCCHHHHHHHHhhcC-CCCcEEEEE--EcCHHHHHHHH-hhc----cC--C-CCCCcHHHHHH
Q 029252           90 QKAMEESGNDKFLIDGFPRNEENRAAFEAVTK-IEPEFVLFF--DCSEEEMERRI-LNR----NQ--G-REDDNVETIRK  158 (196)
Q Consensus        90 ~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~-~~~~~~i~l--~~~~~~~~~R~-~~R----~~--~-r~~~~~~~~~~  158 (196)
                      ...+...+++..|.|..+.+...+..+..... .....++|+  -|++..+..+. ..+    ..  + +.....+.+.+
T Consensus       104 ~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~~~e~a~~dfl~  183 (438)
T KOG0234|consen  104 LHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGKDQEEALKDFLK  183 (438)
T ss_pred             HHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCCCHHHHHHHHHH
Confidence            33344456899999998888888777766322 122234444  44444444444 435    11  1 22233455666


Q ss_pred             HHHHHHhcchhHH
Q 029252          159 RFKVFLESSLPVV  171 (196)
Q Consensus       159 ~~~~~~~~~~~~~  171 (196)
                      |+..|...+.|+-
T Consensus       184 ri~~ye~~YePld  196 (438)
T KOG0234|consen  184 RIRNYEKYYEPLD  196 (438)
T ss_pred             HHHhhhhccCcCC
Confidence            7888887777773

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=97.43  E-value=0.00015  Score=53.07  Aligned_cols=26  Identities=31%  Similarity=0.370  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++.++.|.|++||||||+++.|+..+
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=97.43  E-value=0.00017  Score=56.44  Aligned_cols=26  Identities=38%  Similarity=0.677  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +.-+|+|+|++||||||+++.|.+.+
T Consensus       133 ~~glilI~GpTGSGKTTtL~aLl~~i  158 (358)
T TIGR02524       133 QEGIVFITGATGSGKSTLLAAIIREL  158 (358)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999999876

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.43  E-value=0.00015  Score=53.86  Aligned_cols=26  Identities=27%  Similarity=0.332  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..-+++|.|++||||||+++.|+..+
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            46789999999999999999998643

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.43  E-value=0.00013  Score=51.55  Aligned_cols=26  Identities=35%  Similarity=0.437  Sum_probs=22.3

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      -...-.+++.|||||||||+.+.+|-
T Consensus        28 ia~ge~vv~lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          28 IASGELVVVLGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             ecCCCEEEEEcCCCccHHHHHHHHhc
Confidence            34567899999999999999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	196
1uky_A	203	Substrate Specificity And Assembly Of Catalytic Cen		7e-43
1qf9_A	194	Ph Influences Fluoride Coordination Number Of The A		9e-42
1tev_A	196	Crystal Structure Of The Human UmpCMP KINASE IN OPE		5e-41
3adk_A	195	Refined Structure Of Porcine Cytosolic Adenylate Ki		6e-37
1z83_A	196	Crystal Structure Of Human Ak1a In Complex With Ap5		8e-36
3umf_A	217	Schistosoma Mansoni Adenylate Kinase Length = 217		2e-33
2bwj_A	199	Structure Of Adenylate Kinase 5 Length = 199		1e-32
3cm0_A	186	Crystal Structure Of Adenylate Kinase From Thermus		3e-22
2rgx_A	206	Crystal Structure Of Adenylate Kinase From Aquifex		3e-21
1zd8_A	227	Structure Of Human Adenylate Kinase 3 Like 1 Length		4e-21
2ak3_A	226	The Three-Dimensional Structure Of The Complex Betw		5e-21
1ake_A	214	Structure Of The Complex Between Adenylate Kinase F		5e-21
3hpr_A	214	Crystal Structure Of V148g Adenylate Kinase From E.		6e-21
2ar7_A	246	Crystal Structure Of Human Adenylate Kinase 4, Ak4		6e-20
1e4v_A	214	Mutant G10v Of Adenylate Kinase From E. Coli, Modif		7e-20
1zak_A	222	Adenylate Kinase From Maize In Complex With The Inh		7e-20
1s3g_A	217	Crystal Structure Of Adenylate Kinase From Bacillus		2e-19
3ndp_A	231	Crystal Structure Of Human Ak4(L171p) Length = 231		2e-19
3fb4_A	216	Crystal Structure Of Adenylate Kinase From Mariniba		2e-19
3tlx_A	243	Crystal Structure Of Pf10_0086, Adenylate Kinase Fr		3e-19
1zin_A	217	Adenylate Kinase With Bound Ap5a Length = 217		4e-19
1e4y_A	214	Mutant P9l Of Adenylate Kinase From E. Coli, Modifi		1e-18
1p4s_A	181	Solution Structure Of Mycobacterium Tuberculosis Ad		1e-18
2cdn_A	201	Crystal Structure Of Mycobacterium Tuberculosis Ade		1e-18
3be4_A	217	Crystal Structure Of Cryptosporidium Parvum Adenyla		1e-18
2c9y_A	242	Structure Of Human Adenylate Kinase 2 Length = 242		8e-18
3dkv_A	217	Crystal Structure Of Adenylate Kinase Variant Aklse		1e-17
1ak2_A	233	Adenylate Kinase Isoenzyme-2 Length = 233		2e-17
3gmt_A	230	Crystal Structure Of Adenylate Kinase From Burkhold		4e-17
3dl0_A	216	Crystal Structure Of Adenylate Kinase Variant Aklse		6e-16
2p3s_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		7e-16
2qaj_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		7e-16
2eu8_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		7e-16
1p3j_A	217	Adenylate Kinase From Bacillus Subtilis Length = 21		7e-16
2ori_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-15
2oo7_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-15
2osb_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		6e-15
1aky_A	220	High-Resolution Structures Of Adenylate Kinase From		1e-14
3aky_A	220	Stability, Activity And Structure Of Adenylate Kina		1e-14
2xb4_A	223	Crystal Structures Of Zinc Containing Adenylate Kin		2e-13
3l0p_A	223	Crystal Structures Of Iron Containing Adenylate Kin		2e-13
1dvr_A	220	Structure Of A Mutant Adenylate Kinase Ligated With		9e-13

>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase Length = 203

Iteration: 1
 Score =  169 bits (429), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 84/163 (51%), Positives = 118/163 (72%), Gaps = 7/163 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVT 85
           LGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+ G +I+N IKEG+IVP E+T
Sbjct: 21  LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEIT 80
Query: 86  IKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           + LL+ A+ +   +   KFLIDGFPR  +   +FE    +E +F+LFFDC E+ M  R+L
Sbjct: 81  LALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIMLERLL 139
Query: 143 NRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
            R +  GR DDN+E+I+KRF  F E+S+PV++Y+E K KV +V
Sbjct: 140 ERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRV 182

>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx Phosphoryl Transfer Transition State Analog In UmpCMP Kinase Length = 194

Iteration: 1
 Score =  166 bits (419), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 89/159 (55%), Positives = 115/159 (72%), Gaps = 4/159 (2%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+IVPS VT+
Sbjct: 12  LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTV 71
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
           KLL+ A++ +    FL+DGFPRNEEN  ++E   K  ++ +FVLFFDC EE M +R+L R
Sbjct: 72  KLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKR 131
Query: 145 NQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR 181
            +  GR DDN+E+I+KRF  F   +  V+ +Y    KV+
Sbjct: 132 GESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVK 170

>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN Conformation Length = 196

Iteration: 1
 Score =  163 bits (413), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 115/167 (68%), Gaps = 10/167 (5%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
           LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+T
Sbjct: 9   LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEIT 68
Query: 86  IKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
           I LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC+ E   
Sbjct: 69  ISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128
Query: 139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
            R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+K+
Sbjct: 129 ERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKI 175

>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At 2.1 Angstroms Resolution Length = 195

Iteration: 1
 Score =  150 bits (378), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 76/162 (46%), Positives = 109/162 (67%), Gaps = 7/162 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G++VP E  +
Sbjct: 15  VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVL 74
Query: 87  KLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILN 143
            +L+ AM  +   +  FLIDG+PR  +    FE   KI +P  +L+ D   E M +R+L 
Sbjct: 75  DMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFER--KIGQPTLLLYVDAGPETMTKRLLK 132
Query: 144 RNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           R +  GR DDN ETI+KR + + +++ PV+ +YE +G VRKV
Sbjct: 133 RGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKV 174

>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a Length = 196

Iteration: 1
 Score =  146 bits (368), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 105/161 (65%), Gaps = 5/161 (3%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +GGPGSGKGTQC  IV+ +GYTHLS GDLLR+E+ SGS  G  +  ++++G++VP E  +
Sbjct: 15  VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVL 74
Query: 87  KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
            +L+ AM    N    FLIDG+PR  +    FE     +P  +L+ D   E M +R+L R
Sbjct: 75  DMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG-QPTLLLYVDAGPETMTQRLLKR 133
Query: 145 NQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
            +  GR DDN ETI+KR + + +++ PV+ +YE +G VRKV
Sbjct: 134 GETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKV 174

>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase Length = 217

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 106/159 (66%), Gaps = 7/159 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LGGPGSGKGTQC  +V+ F + HLS+GDLLRAE++SGS  G  ++ M++ G++VP EV +
Sbjct: 35  LGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVL 94
Query: 87  KLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEF-VLFFDCSEEEMERRILN 143
            LL++AM +    N  FLIDG+PR  +    FE   ++ P   V+ FD SEE M +R+L 
Sbjct: 95  ALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEK--EVCPCLCVINFDVSEEVMRKRLLK 152
Query: 144 R--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
           R     R DDN ETI KRF+ F E + PV+++Y+ + KV
Sbjct: 153 RAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKV 191

>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5 Length = 199

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 107/162 (66%), Gaps = 7/162 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +GGPGSGKGTQC  +VE +G+THLS G+LLR E+ S SE   +I+++++ G +VPS + +
Sbjct: 18  IGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVL 77
Query: 87  KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRIL- 142
           +LL++AM  S  D   FLIDG+PR  E +   E   +I +P+ V+  DCS + M  R+L 
Sbjct: 78  ELLKEAMVASLGDTRGFLIDGYPR--EVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQ 135
Query: 143 -NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
            +R+    DD  +TI KR + +  +S+PV+ YYE K ++ K+
Sbjct: 136 MSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKI 177

>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus Thermophilus Hb8 Length = 186

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 97/162 (59%), Gaps = 9/162 (5%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ + + +  G+  LS GD+LR  +  G+  G  ++ +++ G +VP ++ +
Sbjct: 10  LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLIL 69
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVL---FFDCSEEEMERRILN 143
           +L+++ + E    + + DGFPR      A + +       +L     +  EEE+ RRIL 
Sbjct: 70  ELIREELAE----RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILR 125
Query: 144 RN--QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           R   +GR DDN ET+R+R +V+ E + P+V YYEA+G +++V
Sbjct: 126 RAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRV 167

>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex Aeolicus In Complex With Ap5a Length = 206

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 98/188 (52%), Gaps = 27/188 (14%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + +  G+ H+S GD+LR  ++ G+  G   +  ++ G++VP ++ I
Sbjct: 6   LGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLII 65
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSE----EEMER 139
            L+++   + GN   + DGFPR  +   A + + +   ++ + VL F+  +    E +  
Sbjct: 66  ALIEEVFPKHGN--VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSG 123
Query: 140 RILNRNQG------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR 181
           R +N   G                  REDD  E I+KR +V+ E + P+++YY+ KG +R
Sbjct: 124 RRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILR 183
Query: 182 KVIFCSPI 189
            +    P+
Sbjct: 184 IIDASKPV 191

>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1 Length = 227

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGT  + I  HF   HLS+GDLLR  +  G+E G + +  I +GK++P +V  
Sbjct: 13  MGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMT 72
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
           +L    ++      +L+DGFPR      A +   +I+    L   F+  ++ +  R ++ 
Sbjct: 73  RLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHP 132
Query: 145 NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKG 178
             G                         REDD  ET+ KR K + + + PV++YY+ KG
Sbjct: 133 ASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKG 191

>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between Mitochondrial Matrix Adenylate Kinase And Its Substrate Amp At 1.85 Angstroms Resolution Length = 226

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGT  + I +HF   HLS+GDLLR  +  G+E G + +  I +GK++P +V  
Sbjct: 12  MGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMT 71
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
           +L+   ++      +L+DGFPR      A +   +I+    L   F+  ++ +  R ++ 
Sbjct: 72  RLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHP 131
Query: 145 NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKG 178
             G                         REDD  ET+ KR K +   + PV++YY  KG
Sbjct: 132 GSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLEYYRKKG 190

>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State Length = 214

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 31/178 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYY 174
                                          R+DD  ET+RKR   + + + P++ YY
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182

>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli, In Complex With Ap5a Length = 214

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 31/178 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYY 174
                                          R+DD  ET+RKR   + + + P++ YY
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182

>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4 Length = 246

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 27/183 (14%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGT C  I ++FG  HLS+G  LR  IK+ +E G M +  I++  +VP  V  
Sbjct: 33  LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 92
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
           +L+   +E      +L+DGFPR      A + + +++    L   F+  ++ + RR ++ 
Sbjct: 93  RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152
Query: 145 NQGR-------------------------EDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179
             GR                         EDD  E +  R + + + + PV++ Y+++G 
Sbjct: 153 PSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGV 212
Query: 180 VRK 182
           + +
Sbjct: 213 LHQ 215

>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 31/178 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG P +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYY 174
                                          R+DD  ET+RKR   + + + P++ YY
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182

>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a) Length = 222

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           G P SGKGTQC  I   +   H+SAGDLLRAEI +GSENG   +  +++G++VP E+ + 
Sbjct: 12  GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVN 71
Query: 88  LLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
           ++++ + +  +  + +L+DG+PR+     A E + +I P+  +  D  +E +  R++ R
Sbjct: 72  MVKERLRQPDAQENGWLLDGYPRSYSQAMALETL-EIRPDTFILLDVPDELLVERVVGR 129

>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus Globisporus Length = 217

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 33/184 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA I+ G+E G   ++ + +G +VP EVTI
Sbjct: 6   MGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFE---AVTKIEPEFVLFFDCSEEEMERRIL 142
            ++++ + +S  D  FL+DGFPR      A +   A    + E VL     +EE+  R+ 
Sbjct: 66  GIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN +T+  R +V +  + P++ +
Sbjct: 126 GRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAPLLAF 185
Query: 174 YEAK 177
           Y++K
Sbjct: 186 YDSK 189

>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p) Length = 231

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGT C  I ++FG  HLS+G  LR  IK+ +E G M +  I++  +VP  V  
Sbjct: 11  LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 70
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
           +L+   +E      +L+DGFPR      A + + +++    L   F+  ++ + RR ++ 
Sbjct: 71  RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 130
Query: 145 NQGR-------------------------EDDNVETIRKRFKVFLESSLPVVQYYEAKG 178
             GR                         EDD  E +  R + + + + PV++ Y+++G
Sbjct: 131 PSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKPVIELYKSRG 189

>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus Marinus Length = 216

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 99/190 (52%), Gaps = 33/190 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   I+E +   H+S GD+ RA IK+G+E G   ++ + +G +VP EVTI
Sbjct: 6   MGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEA-VTKI--EPEFVLFFDCSEEEMERR-- 140
            ++ + + +    K FL+DGFPR      A ++ +T +  + ++VL     +EE+ +R  
Sbjct: 66  GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLT 125
Query: 141 -----------------------ILNRNQG----REDDNVETIRKRFKVFLESSLPVVQY 173
                                  I +++ G    R DD  ET++ R  V ++ + P++ +
Sbjct: 126 GRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKV 183
           Y  KG ++ +
Sbjct: 186 YSQKGVLKDI 195

>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From Plasmodium Falciparum Length = 243

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 37/187 (19%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGTQ  N+ +   Y HLS GDLLR   +  +E G  I+N+I EGK+V  ++ +
Sbjct: 35  LGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL 94
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN-----EENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140
            L+ + ++     K F++DG+PRN     + N+   +  TK++   V +F+  +E +  R
Sbjct: 95  SLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDG--VFYFNVPDEVLVNR 152
Query: 141 I----LNRNQGR-------------------------EDDNVETIRKRFKVFLESSLPVV 171
           I    +++  GR                         EDDN + ++KR  VF   + P++
Sbjct: 153 ISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLI 212
Query: 172 QYYEAKG 178
            YY+ K 
Sbjct: 213 SYYKNKN 219

>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a Length = 217

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 33/190 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IV  +G  H+S GD+ RA +K G+  G   +  +  G +VP EVTI
Sbjct: 6   MGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTI 65
Query: 87  KLLQKAM-EESGNDKFLIDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSEEE-MER-- 139
            ++++ + ++   + FL+DGFPR      A E +      + ++V+  D  ++  MER  
Sbjct: 66  GIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLT 125
Query: 140 -RILNRNQG-------------------------REDDNVETIRKRFKVFLESSLPVVQY 173
            R + RN G                         R DDN  T+  R +V ++   P+V +
Sbjct: 126 GRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVDF 185
Query: 174 YEAKGKVRKV 183
           YE KG +R +
Sbjct: 186 YEQKGYLRNI 195

>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 31/178 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG   +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYY 174
                                          R+DD  ET+RKR   + + + P++ YY
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182

>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate Kinase Length = 181

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 87/152 (57%), Gaps = 6/152 (3%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + E  G   +S G+L R  I+ G++ G   +  +  G +VPS++T 
Sbjct: 6   LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTN 65
Query: 87  KLLQKAMEE-SGNDKFLIDGFPRN-EENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
           +L+   +      + F++DG+PR+ E+ +A  E + +   + + VL F  SEE +  R+ 
Sbjct: 66  ELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERL- 124
Query: 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYY 174
            + +GR DD  + I  R KV+ + + P+++YY
Sbjct: 125 -KGRGRADDTDDVILNRMKVYRDETAPLLEYY 155

>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate Kinase Complexed With Two Molecules Of Adp And Mg Length = 201

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 87/152 (57%), Gaps = 6/152 (3%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + E  G   +S G+L R  I+ G++ G   +  +  G +VPS++T 
Sbjct: 26  LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTN 85
Query: 87  KLLQKAMEE-SGNDKFLIDGFPRN-EENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
           +L+   +      + F++DG+PR+ E+ +A  E + +   + + VL F  SEE +  R+ 
Sbjct: 86  ELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERL- 144
Query: 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYY 174
            + +GR DD  + I  R KV+ + + P+++YY
Sbjct: 145 -KGRGRADDTDDVILNRMKVYRDETAPLLEYY 175

>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate Kinase Cgd5_3360 Length = 217

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 39/193 (20%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGTQC  I + +G  HLS GD+LR  IK+G++ G   +++I+ G  V  E+ +
Sbjct: 11  IGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVL 70
Query: 87  KLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEF------VLFFDCSEEEMER 139
            L+++  +     + F++DGFPR        E + KI  E       V++F+  + E+  
Sbjct: 71  GLVKEKFDLGVCVNGFVLDGFPRTIPQA---EGLAKILSEIGDSLTSVIYFEIDDSEIIE 127
Query: 140 RILNRNQ-----------------------------GREDDNVETIRKRFKVFLESSLPV 170
           RI  R                                R+DDN E ++ R  VF + + P+
Sbjct: 128 RISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPL 187
Query: 171 VQYYEAKGKVRKV 183
           V++YE  G +++V
Sbjct: 188 VKFYEDLGILKRV 200

>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2 Length = 242

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 33/185 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + E+F   HL+ GD+LRA + SGSE G  ++  +  GK+V  E+ +
Sbjct: 22  LGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVV 81
Query: 87  KLLQKAMEES-GNDKFLIDGFPRN-----------EENRAAFEAVTKIE-PEFVLF---- 129
           +L++K +E     + FL+DGFPR            E+ +   ++V +   P+ +L     
Sbjct: 82  ELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRIT 141
Query: 130 ---------------FDCSEEEMERRILNRNQ-GREDDNVETIRKRFKVFLESSLPVVQY 173
                          F+  +E M+  I       R DDN + ++ R + +   + P+++Y
Sbjct: 142 GRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTTPLIEY 201
Query: 174 YEAKG 178
           Y  +G
Sbjct: 202 YRKRG 206

>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1 Length = 217

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 33/184 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +S  ++ FL+DGFPR   +             P ++V+     +EE+  R+ 
Sbjct: 66  GIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLAF 185
Query: 174 YEAK 177
           Y++K
Sbjct: 186 YDSK 189

>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2 Length = 233

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 33/185 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + ++F   HL+ GD+LRA + SGSE G  ++  +  GK+V  E+ +
Sbjct: 22  LGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVL 81
Query: 87  KLLQKAMEESG-NDKFLIDGFPRN-----------EENRAAFEAVTKIE-PEFVLF---- 129
           +L++K +E     + FL+DGFPR            E+ +   ++V +   P+ +L     
Sbjct: 82  ELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRIT 141
Query: 130 ---------------FDCSEEEMERRILNRNQ-GREDDNVETIRKRFKVFLESSLPVVQY 173
                          F+  +E M+  I       R DDN + ++ R + +   + P+V+Y
Sbjct: 142 GRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEY 201
Query: 174 YEAKG 178
           Y  +G
Sbjct: 202 YSKRG 206

>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia Pseu Length = 230

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 33/179 (18%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I E FG   +S GD LRA +K+G+  G   +    EGK+VP  + I
Sbjct: 14  LGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSLII 73
Query: 87  KLLQKAMEESG-NDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
            L+++ ++E+   + +L DGFPR   +  A  EA   I  ++VL  D    E+  R   R
Sbjct: 74  GLVKERLKEADCANGYLFDGFPRTIAQADAXKEAGVAI--DYVLEIDVPFSEIIERXSGR 131
Query: 145 NQG-----------------------------REDDNVETIRKRFKVFLESSLPVVQYY 174
                                           R+DD  ET++KR  V+   + P++ YY
Sbjct: 132 RTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYY 190

>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3 Length = 216

Iteration: 1
 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 33/190 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+     ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDF 185
Query: 174 YEAKGKVRKV 183
           Y+ KG +  V
Sbjct: 186 YDEKGYLVNV 195

>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (G214rQ199R) Length = 217

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 33/190 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKV 183
           Y  KG +  V
Sbjct: 186 YSEKGYLANV 195

>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199rG213E) Length = 217

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 33/190 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKV 183
           Y  KG +  V
Sbjct: 186 YSEKGYLANV 195

>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199r) Length = 216

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 33/190 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKV 183
           Y  KG +  V
Sbjct: 186 YSEKGYLANV 195

>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis Length = 217

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 33/190 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKV 183
           Y  KG +  V
Sbjct: 186 YSEKGYLANV 195

>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (A193vQ199R) Length = 216

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 33/190 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKV 183
           Y  KG +  V
Sbjct: 186 YSEKGYLVNV 195

>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (T179iQ199R) Length = 217

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 33/190 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++   P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQIQPLLDF 185
Query: 174 YEAKGKVRKV 183
           Y  KG +  V
Sbjct: 186 YSEKGYLANV 195

>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (q16l/q199r/) Length = 216

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 33/190 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGT    IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKV 183
           Y  KG +  V
Sbjct: 186 YSEKGYLANV 195

>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast Ligated With Inhibitor Ap5a, Showing The Pathway Of Phosphoryl Transfer Length = 220

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 34/196 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87  KLLQKAMEESG--NDKFLIDGFPRN-----------EENRAAFEAVT--KIEPEFVL--- 128
            +++  +  +    + F++DGFPR            +E     E     K++ E ++   
Sbjct: 70  NMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129
Query: 129 ---------------FFDCSEEEMERRILNRNQ-GREDDNVETIRKRFKVFLESSLPVVQ 172
                           F+  +E+M+  +       R DDN + ++KR   +   + P+V 
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVD 189
Query: 173 YYEAKGKVRKVIFCSP 188
           +Y+  G    V    P
Sbjct: 190 FYKKTGIWAGVDASQP 205

>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase Mutants Length = 220

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 34/196 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87  KLLQKAMEESG--NDKFLIDGFPRN-----------EENRAAFEAVT--KIEPEFVL--- 128
            +++  +  +    + F++DGFPR            +E     E     K++ E ++   
Sbjct: 70  NMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129
Query: 129 ---------------FFDCSEEEMERRILNRNQ-GREDDNVETIRKRFKVFLESSLPVVQ 172
                           F+  +E+M+  +       R DDN + ++KR   +   + P+V 
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVD 189
Query: 173 YYEAKGKVRKVIFCSP 188
           +Y+  G    V    P
Sbjct: 190 FYKKTGIWAGVDASQP 205

>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 29  GP-GSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           GP GSGKGTQ   + + +   H+ +G + R  I  G+E G   +  I  G +VP ++TI 
Sbjct: 7   GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 88  LLQKAMEESGNDKFLIDGFPRNE-ENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
           ++ + +E  G D +L+DGFPRN  + +  FEA+ +  ++  FV+      E  + RI+ R
Sbjct: 67  MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126

>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 29  GP-GSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           GP GSGKGTQ   + + +   H+ +G + R  I  G+E G   +  I  G +VP ++TI 
Sbjct: 7   GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 88  LLQKAMEESGNDKFLIDGFPRNE-ENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
           ++ + +E  G D +L+DGFPRN  + +  FEA+ +  ++  FV+      E  + RI+ R
Sbjct: 67  MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126

>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An Atp- Analogue Showing Domain Closure Over Atp Length = 220

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 89/196 (45%), Gaps = 34/196 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87  KLLQKAMEESGNDK--FLIDGFPRN-----------EENRAAFEAVT--KIEPEFVL--- 128
            +++  +  +   K  F++ GFPR            +E     E     K++ E ++   
Sbjct: 70  NMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129
Query: 129 ---------------FFDCSEEEMERRILNRNQGR-EDDNVETIRKRFKVFLESSLPVVQ 172
                           F+  +E+M+  +      +  DDN + ++KR   +   + P+V 
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVD 189
Query: 173 YYEAKGKVRKVIFCSP 188
           +Y+  G    V    P
Sbjct: 190 FYKKTGIWAGVDASQP 205

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	4e-91
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	2e-88
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	3e-88
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	2e-87
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	1e-85
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	3e-49
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	4e-49
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	9e-49
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	1e-47
2rgx_A	206	Adenylate kinase; transferase(phosphotransferase),	8e-47
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	6e-46
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	8e-46
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	3e-45
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	4e-45
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	4e-45
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	4e-45
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	6e-45
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	7e-45
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	2e-44
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	3e-40
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	1e-25
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	9e-23
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	1e-12
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	1e-10
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	1e-09
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	4e-09
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	9e-08
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	2e-07
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	1e-06
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	3e-06
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	7e-06
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	1e-05
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	2e-05
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	5e-05
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	6e-05
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score =  263 bits (676), Expect = 4e-91
 Identities = 94/169 (55%), Positives = 121/169 (71%), Gaps = 4/169 (2%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
            KP VVFVLGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+
Sbjct: 4   SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGE 63

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEE 136
           IVPS VT+KLL+ A++ +    FL+DGFPRNEEN  ++E      ++ +FVLFFDC EE 
Sbjct: 64  IVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEV 123

Query: 137 MERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           M +R+L R +  GR DDN+E+I+KRF  F   +  V+ +Y    KV+ +
Sbjct: 124 MTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKII 172

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score =  257 bits (659), Expect = 2e-88
 Identities = 69/170 (40%), Positives = 109/170 (64%), Gaps = 5/170 (2%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           ++K  ++F++GGPGSGKGTQC  +VE +G+THLS G+LLR E+ S SE   +I+++++ G
Sbjct: 9   LRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERG 68

Query: 78  KIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135
            +VPS + ++LL++AM  S  D   FLIDG+PR  +    F      +P+ V+  DCS +
Sbjct: 69  DLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIG-DPQLVICMDCSAD 127

Query: 136 EMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
            M  R+L    +    DD  +TI KR + +  +S+PV+ YYE K ++ K+
Sbjct: 128 TMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKI 177

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score =  256 bits (657), Expect = 3e-88
 Identities = 77/169 (45%), Positives = 111/169 (65%), Gaps = 5/169 (2%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KK  ++FV+GGPGSGKGTQC  IV+ +GYTHLS GDLLR+E+ SGS  G  +  ++++G+
Sbjct: 7   KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQ 66

Query: 79  IVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136
           +VP E  + +L+ AM    N    FLIDG+PR  +    FE     +P  +L+ D   E 
Sbjct: 67  LVPLETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG-QPTLLLYVDAGPET 125

Query: 137 MERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           M +R+L R +  GR DDN ETI+KR + + +++ PV+ +YE +G VRKV
Sbjct: 126 MTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKV 174

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score =  255 bits (653), Expect = 2e-87
 Identities = 88/183 (48%), Positives = 126/183 (68%), Gaps = 7/183 (3%)

Query: 7   TPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSE 65
           T    +    +  + +V+FVLGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+
Sbjct: 1   TAATTSQPAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQ 60

Query: 66  NGTMIQNMIKEGKIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKI 122
            G +I+N IKEG+IVP E+T+ LL+ A+ +   +   KFLIDGFPR  +   +FE     
Sbjct: 61  YGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIV- 119

Query: 123 EPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
           E +F+LFFDC E+ M  R+L R +  GR DDN+E+I+KRF  F E+S+PV++Y+E K KV
Sbjct: 120 ESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKV 179

Query: 181 RKV 183
            +V
Sbjct: 180 VRV 182

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score =  249 bits (639), Expect = 1e-85
 Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 10/174 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFD 131
           IVP E+TI LL++ M++     +  +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           C+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+K+
Sbjct: 122 CNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKI 175

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Length = 186

 Score =  157 bits (399), Expect = 3e-49
 Identities = 58/162 (35%), Positives = 98/162 (60%), Gaps = 9/162 (5%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ + + +  G+  LS GD+LR  +  G+  G  ++ +++ G +VP ++ +
Sbjct: 10  LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLIL 69

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILN 143
           +L+++ + E    + + DGFPR      A + +   T      V+  +  EEE+ RRIL 
Sbjct: 70  ELIREELAE----RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILR 125

Query: 144 RN--QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           R   +GR DDN ET+R+R +V+ E + P+V YYEA+G +++V
Sbjct: 126 RAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRV 167

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Length = 246

 Score =  158 bits (403), Expect = 4e-49
 Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 31/186 (16%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGT C  I ++FG  HLS+G  LR  IK+ +E G M +  I++  +VP  V  
Sbjct: 33  LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 92

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-- 144
           +L+   +E      +L+DGFPR      A + + ++  + V+  +   E ++ R+  R  
Sbjct: 93  RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEV--DLVISLNIPFETLKDRLSRRWI 150

Query: 145 ----------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYYEAK 177
                             G           +EDD  E +  R + + + + PV++ Y+++
Sbjct: 151 HPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSR 210

Query: 178 GKVRKV 183
           G + + 
Sbjct: 211 GVLHQF 216

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Length = 227

 Score =  157 bits (399), Expect = 9e-49
 Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 31/186 (16%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGT  + I  HF   HLS+GDLLR  +  G+E G + +  I +GK++P +V  
Sbjct: 13  MGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMT 72

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-- 144
           +L    ++      +L+DGFPR      A +   +I  + V+  +   E +++R+  R  
Sbjct: 73  RLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQI--DTVINLNVPFEVIKQRLTARWI 130

Query: 145 ----------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYYEAK 177
                             G           REDD  ET+ KR K + + + PV++YY+ K
Sbjct: 131 HPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKK 190

Query: 178 GKVRKV 183
           G +   
Sbjct: 191 GVLETF 196

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201

 Score =  153 bits (390), Expect = 1e-47
 Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 9/187 (4%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MG+        +          V+  LG PG+GKGTQ   + E  G   +S G+L R  I
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMRVLL-LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNI 59

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAV 119
           + G++ G   +  +  G +VPS++T +L+   +        F++DG+PR+ E   A   +
Sbjct: 60  EEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEM 119

Query: 120 ---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176
                 + + VL F  SEE +  R+  R  GR DD  + I  R KV+ + + P+++YY  
Sbjct: 120 LERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVILNRMKVYRDETAPLLEYY-- 175

Query: 177 KGKVRKV 183
           + +++ V
Sbjct: 176 RDQLKTV 182

>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, nucleo binding, transferase; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Length = 206

 Score =  151 bits (384), Expect = 8e-47
 Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 27/182 (14%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + +  G+ H+S GD+LR  ++ G+  G   +  ++ G++VP ++ I
Sbjct: 6   LGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLII 65

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILN 143
            L+++   +  +   + DGFPR  +   A + + +   ++ + VL F+  +E +  R+  
Sbjct: 66  ALIEEVFPK--HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSG 123

Query: 144 RN----------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR 181
           R                         REDD  E I+KR +V+ E + P+++YY+ KG +R
Sbjct: 124 RRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILR 183

Query: 182 KV 183
            +
Sbjct: 184 II 185

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Length = 243

 Score =  150 bits (382), Expect = 6e-46
 Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 33/190 (17%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGTQ  N+ +   Y HLS GDLLR   +  +E G  I+N+I EGK+V  ++ +
Sbjct: 35  LGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL 94

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            L+ + ++     K F++DG+PRN +       + +    + + V +F+  +E +  RI 
Sbjct: 95  SLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRIS 154

Query: 143 NR------------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQY 173
            R                                REDDN + ++KR  VF   + P++ Y
Sbjct: 155 GRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISY 214

Query: 174 YEAKGKVRKV 183
           Y+ K  +  +
Sbjct: 215 YKNKNLLINL 224

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Length = 217

 Score =  149 bits (379), Expect = 8e-46
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 33/190 (17%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGTQC  I + +G  HLS GD+LR  IK+G++ G   +++I+ G  V  E+ +
Sbjct: 11  IGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVL 70

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            L+++  +       F++DGFPR          +          V++F+  + E+  RI 
Sbjct: 71  GLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERIS 130

Query: 143 NR------------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQY 173
            R                    G           R+DDN E ++ R  VF + + P+V++
Sbjct: 131 GRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKF 190

Query: 174 YEAKGKVRKV 183
           YE  G +++V
Sbjct: 191 YEDLGILKRV 200

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Length = 214

 Score =  148 bits (375), Expect = 3e-45
 Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 31/191 (16%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG P +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR- 144
            L+++ + +      FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA-GINVDYVLEFDVPDELIVDRIVGRR 124

Query: 145 -----------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYYEA 176
                             +G           R+DD  ET+RKR   + + + P++ YY  
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSK 184

Query: 177 KGKVRKVIFCS 187
           + +     +  
Sbjct: 185 EAEAGNTKYAK 195

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Length = 220

 Score =  148 bits (375), Expect = 4e-45
 Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 34/191 (17%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69

Query: 87  KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRI 141
            +++  +  +   K  F++DGFPR        + + K      E  +     +E +  RI
Sbjct: 70  NMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129

Query: 142 LNR------------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQ 172
             R                                R DDN + ++KR   +   + P+V 
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVD 189

Query: 173 YYEAKGKVRKV 183
           +Y+  G    V
Sbjct: 190 FYKKTGIWAGV 200

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Length = 216

 Score =  147 bits (374), Expect = 4e-45
 Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 33/190 (17%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR      A E + +      ++V+     ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLT 125

Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDF 185

Query: 174 YEAKGKVRKV 183
           Y+ KG +  V
Sbjct: 186 YDEKGYLVNV 195

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Length = 216

 Score =  147 bits (374), Expect = 4e-45
 Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 33/190 (17%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   I+E +   H+S GD+ RA IK+G+E G   ++ + +G +VP EVTI
Sbjct: 6   MGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            ++ + + +    K FL+DGFPR      A +++      + ++VL     +EE+ +R+ 
Sbjct: 66  GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLT 125

Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DD  ET++ R  V ++ + P++ +
Sbjct: 126 GRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDF 185

Query: 174 YEAKGKVRKV 183
           Y  KG ++ +
Sbjct: 186 YSQKGVLKDI 195

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Length = 233

 Score =  147 bits (374), Expect = 6e-45
 Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 33/208 (15%)

Query: 9   VKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGT 68
           V  A+      K     +LG PG+GKGTQ   + ++F   HL+ GD+LRA + SGSE G 
Sbjct: 4   VPAAEPVPESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGK 63

Query: 69  MIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEP 124
            ++  +  GK+V  E+ ++L++K +E       FL+DGFPR        + + +    + 
Sbjct: 64  KLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKL 123

Query: 125 EFVLFFDCSEEEMERRILNR------------------NQG-----------REDDNVET 155
           + V+ F   +  + RRI  R                                R DDN + 
Sbjct: 124 DSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKA 183

Query: 156 IRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           ++ R + +   + P+V+YY  +G    +
Sbjct: 184 LKIRLEAYHTQTTPLVEYYSKRGIHSAI 211

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 230

 Score =  147 bits (374), Expect = 7e-45
 Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 32/198 (16%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I
Sbjct: 14  LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLII 73

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR- 144
            L+++ ++E+     +L DGFPR      A +    +  ++VL  D    E+  R+  R 
Sbjct: 74  GLVKERLKEADCANGYLFDGFPRTIAQADAMKEA-GVAIDYVLEIDVPFSEIIERMSGRR 132

Query: 145 -----------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYYEA 176
                             +G           R+DD  ET++KR  V+   + P++ YY  
Sbjct: 133 THPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGD 192

Query: 177 KGKVRKVIFC-SPIFILV 193
             +        +P +  +
Sbjct: 193 WARRGAENGLKAPAYRKI 210

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Length = 222

 Score =  146 bits (370), Expect = 2e-44
 Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 30/194 (15%)

Query: 17  TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 76
            +  P  V + G P SGKGTQC  I   +   H+SAGDLLRAEI +GSENG   +  +++
Sbjct: 1   ALADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEK 60

Query: 77  GKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134
           G++VP E+ + ++++ + +    +  +L+DG+PR+     A E + +I P+  +  D  +
Sbjct: 61  GQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETL-EIRPDTFILLDVPD 119

Query: 135 EEMERRILNRN-------------------------QGREDDNVETIRKRFKVFLESSLP 169
           E +  R++ R                            R DD  E ++ R + + ++   
Sbjct: 120 ELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIES 179

Query: 170 VVQYYEAKGKVRKV 183
           ++  Y  +  + KV
Sbjct: 180 LLSTY--ENIIVKV 191

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Length = 223

 Score =  135 bits (342), Expect = 3e-40
 Identities = 47/199 (23%), Positives = 78/199 (39%), Gaps = 38/199 (19%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
            G  GSGKGTQ   + + +   H+ +G + R  I  G+E G   +  I  G +VP ++TI
Sbjct: 6   FGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITI 65

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILN 143
            ++ + +E  G D +L+DGFPRN           +   ++  FV+      E  + RI+ 
Sbjct: 66  PMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMG 125

Query: 144 RN-------------------------------QGREDDNVE-TIRKRFKVF---LESSL 168
           R                                  R DD  E  I KR  ++   ++ +L
Sbjct: 126 RRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTL 185

Query: 169 PVVQYYEAKGKVRKVIFCS 187
               YY+        ++  
Sbjct: 186 AAAYYYKNMAAKEGFVYIE 204

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 96.5 bits (240), Expect = 1e-25
 Identities = 25/138 (18%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-GKIVP 81
           V+ + G PGSGK    A +++  G   +   D++R      ++ G  + +  K   +I  
Sbjct: 3   VILITGMPGSGKSEF-AKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYG 61

Query: 82  SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141
             V  +L  + +  S +D  + DG  R+      F+     +  +++      +   +R+
Sbjct: 62  DGVVARLCVEELGTSNHDLVVFDGV-RSLAEVEEFKR-LLGDSVYIVAVHSPPKIRYKRM 119

Query: 142 LNRNQGREDDNVETIRKR 159
           + R +  +   +  + +R
Sbjct: 120 IERLRSDDSKEISELIRR 137

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 89.2 bits (221), Expect = 9e-23
 Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 11/155 (7%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +  + G  G GK T C  +      +    GD++   +  G           +   +   
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESD---ELLALTWK 60

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF---VLFFDCSEEEMER 139
            +T          + ND  ++D     +E  A  + V     +     +    + EE+ R
Sbjct: 61  NITDLT--VNFLLAQND-VVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLR 117

Query: 140 RILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY 174
           R   R   +++   E   +  + F    +    +Y
Sbjct: 118 RDALR--KKDEQMGERCLELVEEFESKGIDERYFY 150

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 62.5 bits (152), Expect = 1e-12
 Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 16/172 (9%)

Query: 21  PTVVFVLGGPGSGKGTQCANIV-EHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
             ++  +G PGSGK T     + ++ G+ +++  D  R  I +  E         KEG +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERDEYKYTKKKEGIV 60

Query: 80  VPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEE 135
             + +     +  +    + K  +I     N E R A+E        + E    FD    
Sbjct: 61  --TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHK-VFDVPWT 117

Query: 136 EMERRILNRNQGREDDNV--ETIRKRFKVFLESSLPVVQYYEAKGKVRKVIF 185
           E+ +    RN  R    V  + +R  +K      L +  Y    GK + VIF
Sbjct: 118 ELVK----RNSKRGTKAVPIDVLRSMYKSM-REYLGLPVYNGTPGKPKAVIF 164

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 57.0 bits (137), Expect = 1e-10
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 19/133 (14%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G PG GK T    +    G  +++ GDL R E            +   +  I+  +
Sbjct: 14  ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY------DGYDEEYDCPILDED 67

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143
             +  L   M E G    ++D    +      F  V      FVL        +  R+  
Sbjct: 68  RVVDELDNQMREGG---VIVDYHGCDFFPERWFHIV------FVL--RTDTNVLYERLET 116

Query: 144 RNQGRE--DDNVE 154
           R    +   DN++
Sbjct: 117 RGYNEKKLTDNIQ 129

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Length = 192

 Score = 54.3 bits (130), Expect = 1e-09
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 12/147 (8%)

Query: 23  VVFVLGGPGSGKGTQCANIVE-----HFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           VV V G PG G  T     ++        Y  +S G ++    K  +        M K  
Sbjct: 5   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSD-RDQMRKMD 63

Query: 78  KIVPSEVTIKLLQKAMEESGNDKFLIDG-----FPRNEENRAAFEAVTKIEPEFVLFFDC 132
                 +     +K  E +      +D       P+          + ++ P+ ++  + 
Sbjct: 64  PETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVET 123

Query: 133 SEEE-MERRILNRNQGREDDNVETIRK 158
           + +E + RR+ +  + R+ D   TI +
Sbjct: 124 TGDEILMRRMSDETRVRDLDTASTIEQ 150

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 53.0 bits (127), Expect = 4e-09
 Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 11/135 (8%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS--GSENGTMIQNMIKE 76
           + P ++ V G P +GK T    +        LS  D  +  +    G  +    + +   
Sbjct: 3   QTPALIIVTGHPATGKTTLSQALATGLRLPLLS-KDAFKEVMFDGLGWSDREWSRRVGAT 61

Query: 77  GKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSE 134
                  +        + +SG    +++   R + +    + +          +    S 
Sbjct: 62  AI----MMLYHTAATIL-QSGQS-LIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASG 115

Query: 135 EEMERRILNRNQGRE 149
           + +  RIL+R     
Sbjct: 116 DVLVERILSRIAQGA 130

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 50.1 bits (119), Expect = 9e-08
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 9/131 (6%)

Query: 21  PTVVFVLGGPGSGKGTQCANIV-EHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
             ++  +G PGSGK T     + ++ G+ +++  D  R  I +  E         KEG +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERDEYKYTKKKEGIV 60

Query: 80  VPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEE 135
             + +     +  +    + K  +I     N E R A+E   K    + E    FD    
Sbjct: 61  --TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHK-VFDVPWT 117

Query: 136 EMERRILNRNQ 146
           E+ +R   R  
Sbjct: 118 ELVKRNSKRGT 128

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 24/173 (13%), Positives = 49/173 (28%), Gaps = 10/173 (5%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 76
           K+P  + + G  G+GK T      + F      +                    ++ ++ 
Sbjct: 30  KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEY 89

Query: 77  GKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFV--LFFDCSE 134
            K    ++   L+ K      N   LI+G  R  +       + K +   V         
Sbjct: 90  TKDFAGKMVESLVTKLSSLGYN--LLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKP 147

Query: 135 EEMERRILNRNQGREDDNV----ETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           E      L R +     N      T ++     +   +   +  E      ++
Sbjct: 148 ELSYLSTLIRYEELYIINPNQARATPKEHHDFIVNHLVDNTRKLEELAIFERI 200

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 12/156 (7%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
              ++ + G PGSGK T    +    G    H    D L   IK G  +  + Q+  +  
Sbjct: 8   GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH-SDDLWGYIKHGRIDPWLPQSHQQNR 66

Query: 78  KIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137
            I+        +     + G    ++DG  R +   A       +     +    +  E 
Sbjct: 67  MIMQ---IAADVAGRYAKEGYF-VILDGVVRPDWLPAFTALARPLH---YIVLRTTAAEA 119

Query: 138 ERRILNRNQGREDD--NVETIRKRFKVFLESSLPVV 171
             R L+R      D   V  +  +F         V+
Sbjct: 120 IERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVL 155

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Length = 194

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 15/151 (9%)

Query: 23  VVFVLGGPGSGKGTQCANIVE-----HFGYTHLSAGDLLRAEIKSG---SENGTMIQNMI 74
           +  V G PG GK T  A + E           ++ GD + A         +   M +  +
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 75  KEGKIVPSEVTIKLLQKAMEESGNDKFLIDG-----FPRNEENRAAFEAVTKIEPEFVLF 129
           ++ K +  +    + ++A    G     ID       P           +T+I P  +  
Sbjct: 63  EKQKKLQIDAAKGIAEEA-RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFL 121

Query: 130 FDCSEEE-MERRILNRNQGREDDNVETIRKR 159
            +   +  + R+  +  + R D + E++   
Sbjct: 122 LEADPKIILSRQKRDTTRNRNDYSDESVILE 152

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184

 Score = 43.6 bits (102), Expect = 7e-06
 Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 20/145 (13%)

Query: 15  TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNM 73
           ++   K   + + G PG+GK +    I     G+ HL  G L++       EN    +  
Sbjct: 4   SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK-------ENHFYTEYD 56

Query: 74  IKEGKIVPSEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD 131
            +    +  E     L   ME         ++D            E   +     V+   
Sbjct: 57  TELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSS--------ELFPERWFHMVVVLH 108

Query: 132 CSEEEMERRILNRNQGRE--DDNVE 154
            S E +  R+  R        +N+E
Sbjct: 109 TSTEVLFERLTKRQYSEAKRAENME 133

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 12/139 (8%)

Query: 7   TPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSEN 66
           +   +++A    + P  + V+G  GSGK +    I E  GY  +    L   E       
Sbjct: 4   SIEYKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPE------- 56

Query: 67  GTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPE 125
                  + EG  +  +     L    E  +  +  ++         R            
Sbjct: 57  ---NIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLA 113

Query: 126 FVLFFDCSEEEMERRILNR 144
           FV F   SE  +  R+ +R
Sbjct: 114 FV-FLHGSESVLAERMHHR 131

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Length = 287

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 6/145 (4%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA-GDLLRAEIKSGSE-NGTMIQNMIK 75
           V+ PT   + G PGSGK +  + I E      +    D  + +  +  E      ++++K
Sbjct: 30  VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVK 89

Query: 76  EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIE--PEFVLFFDCS 133
                 + +T  ++ +  ++  N   +I+G  R  +       + + +     +      
Sbjct: 90  HVTPYSNRMTEAIISRLSDQGYN--LVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVP 147

Query: 134 EEEMERRILNRNQGREDDNVETIRK 158
           +       + R +    D+  T R 
Sbjct: 148 KINSYLGTIERYETMYADDPMTARA 172

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 17/133 (12%), Positives = 34/133 (25%), Gaps = 9/133 (6%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
              ++ + GG  +GK      +       +      D L   +    ++         +G
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG-VDSLIEAMPLKMQSAEGGIEFDADG 60

Query: 78  KIVPSEVTIKLLQ------KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD 131
            +        L         AM  +G    + D F      +  + +         +   
Sbjct: 61  GVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVR 120

Query: 132 CSEEEMERRILNR 144
           C     E R   R
Sbjct: 121 CDGAVAEGRETAR 133

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 23/150 (15%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNM 73
               ++ + G PG GK T   N+ +           L   DL+R       E        
Sbjct: 2   GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG-SDLIRESFPVWKEK------- 53

Query: 74  IKEGKIVPSEVTIKLLQKAMEESGNDKFLI--DGFPRNEENRAAFEAVTKIEPEF-VLFF 130
                    E   K   + ++ +  + ++I  D    N   R       K    + +++ 
Sbjct: 54  -------YEEFIKKSTYRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYL 106

Query: 131 DCSEEEMERRILNRNQGREDDNVETIRKRF 160
             S + + RR + R +   ++ ++ + ++F
Sbjct: 107 KASLDVLIRRNIERGEKIPNEVIKKMYEKF 136

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 7/144 (4%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
            G  + T      + +T +    V V+G  GSGK T    + +  G     A      E 
Sbjct: 9   SGVDLGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPEN 68

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
            +  + G  + +  +     P   ++     A  ++G    +     +    R       
Sbjct: 69  IATMQRGIPLTDEDRW----PWLRSLAEWMDARADAGVSTIITCSALK-RTYRDVLREG- 122

Query: 121 KIEPEFVLFFDCSEEEMERRILNR 144
                  L  D   E ++ R+  R
Sbjct: 123 -PPSVDFLHLDGPAEVIKGRMSKR 145

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 33/199 (16%), Positives = 58/199 (29%), Gaps = 70/199 (35%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE------------IKSGSENGT--- 68
           V + G  GSGK             T + A D+  +             +   + N     
Sbjct: 153 VLIDGVLGSGK-------------TWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 69  --MIQNMIKEGKIVPS-------EVTIKLLQKAMEESGNDKFLIDGFPR------NEENR 113
             M+Q ++   +I P+          IKL   +++           +        N +N 
Sbjct: 199 LEMLQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 114 AAFEAVTKIEPEFVLFFD--CSEEEMERRIL--NRNQGREDDNVETIRKRFKVFLESSLP 169
            A+ A           F+  C       +IL   R +   D           + L+    
Sbjct: 257 KAWNA-----------FNLSC-------KILLTTRFKQVTDFLSAATTTH--ISLDHHSM 296

Query: 170 VVQYYEAKGKVRKVIFCSP 188
            +   E K  + K + C P
Sbjct: 297 TLTPDEVKSLLLKYLDCRP 315

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 106 FPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQG----REDDNVETIRKRF 160
           F   E      + ++  E  FV  FDC + ++M + IL++ +        D V    + F
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 161 KVFLESSLPVVQYY 174
              L     +VQ +
Sbjct: 69  WTLLSKQEEMVQKF 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	100.0
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	100.0
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	100.0
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.97
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.96
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.96
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.96
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.96
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.96
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.96
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.96
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.96
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.96
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.95
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.95
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.95
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.95
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.94
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.94
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.94
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.86
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.85
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.77
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.77
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.77
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.76
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.75
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.75
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.74
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.73
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.73
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.73
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.73
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.73
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.72
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.72
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.71
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.71
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.7
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.69
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.69
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.69
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.69
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.68
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.68
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.68
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.68
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.68
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.67
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.67
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.66
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.65
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.65
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.64
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.64
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.64
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.62
1via_A	175	Shikimate kinase; structural genomics, transferase	99.62
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.61
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.6
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.6
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.59
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.58
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.58
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.57
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.56
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.56
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.55
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.55
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.54
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.54
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.53
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.51
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.5
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.49
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.48
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.48
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.46
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.46
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.45
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.44
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.44
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.43
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.41
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.41
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.38
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.37
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.37
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.32
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.31
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.28
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	99.26
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.25
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	99.23
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.2
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	99.18
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.17
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.16
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.16
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	99.14
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.13
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.08
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	99.07
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.06
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	99.04
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.03
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.02
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	99.0
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.99
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	98.97
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.93
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.88
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	98.87
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	98.84
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	98.82
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.8
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.79
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.78
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.77
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.75
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.7
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.64
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.62
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.6
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.53
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.52
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.48
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.45
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.44
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.39
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	98.39
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.32
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.27
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.26
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.26
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.26
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	98.26
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	98.26
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.25
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.17
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.16
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.14
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.12
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	98.1
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.07
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.06
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	98.05
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.04
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.03
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.03
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.02
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.99
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.97
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.97
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.97
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.95
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.94
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.94
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.93
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.92
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.92
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.92
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.91
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.91
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.9
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.89
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.88
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.87
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.87
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.86
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.86
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.86
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.85
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.85
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.82
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.82
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.82
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.82
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.82
3bos_A	242	Putative DNA replication factor; P-loop containing	97.81
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.8
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.79
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.78
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.76
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.75
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.75
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.75
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.74
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.74
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.74
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.73
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.72
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.72
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.72
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.71
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.71
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.71
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.7
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.68
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.68
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.68
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.68
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.68
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.67
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.67
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.66
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.65
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.65
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.64
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.64
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.64
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.64
2og2_A	359	Putative signal recognition particle receptor; nuc	97.63
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.63
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.63
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	97.62
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.62
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.61
3pvs_A	447	Replication-associated recombination protein A; ma	97.61
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.61
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.61
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.6
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.6
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.6
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.6
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.59
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.59
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.59
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.59
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.58
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.58
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.58
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.58
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.58
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.58
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.58
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.58
1g6h_A	257	High-affinity branched-chain amino acid transport	97.57
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.56
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.56
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.56
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.56
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.56
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.56
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.56
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.55
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.54
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.53
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.53
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.53
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.53
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.52
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.52
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.52
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.52
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.51
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.5
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.5
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.5
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.5
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.5
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.49
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.49
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.48
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.48
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.48
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.47
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.47
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.47
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.47
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.46
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.45
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.45
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.44
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.44
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.43
2qgz_A	308	Helicase loader, putative primosome component; str	97.43
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.43
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.43
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.42
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.42
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.42
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.42
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.42
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.41
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	97.41
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.4
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.4
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.4
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.4
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.4
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.4
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.39
3co5_A	143	Putative two-component system transcriptional RES	97.39
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.38
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.37
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.37
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.37
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.36
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.36
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.36
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.35
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.34
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.34
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.33
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.32
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.31
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.31
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.3
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.3
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.29
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.29
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.28
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.27
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.27
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.27
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.25
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.24
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.24
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.24
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.24
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.24
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.23
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.23
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.23
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.23
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.23
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.23
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.22
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.22
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.22
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.21
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.21
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.21
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.19
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.19
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.17
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.17
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.17
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.17
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.16
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.16
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.16
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.16
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.15
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.15
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.14
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.13
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.13
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.13
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.13
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.12
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.12
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.12
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.11
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.11
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.11
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.11
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.11
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.1
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.1
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.09
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.09
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.08
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.08
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.08
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.08
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.07
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.07
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.07
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.07
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	97.06
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.06
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.06
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.05
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	97.05
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.05
2xxa_A	433	Signal recognition particle protein; protein trans	97.05
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.05
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.04
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.04
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.04
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.04
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.04
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.04
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.03
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.03
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.02
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.02
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.01
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.01
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.0
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.0
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.0
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.99
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.99
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.99
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.99
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.98
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.98
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.98
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.97
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.97
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.97
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.97
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.97
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.97
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.96
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.96
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.96
2fna_A	357	Conserved hypothetical protein; structural genomic	96.95
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.95
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.95
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.95
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.95
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.95
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.94
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.94
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.93
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.92
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.92
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.92
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.92
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.91
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.91
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.91
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.91
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.91
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.91
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.91
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.9
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.89
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.89
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.89
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.87
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.87
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.87
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.87
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.86
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.86
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.86
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.86
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.85
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.85
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.85
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.85
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.84
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.84
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.84
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.84
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.83
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.83
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.83
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.83
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.83
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.82
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.81
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.81
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.8
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	96.8
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.8
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.79
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.79
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.78
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.78
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.77
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.77
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.76
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.75
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.75
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.74
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.74
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.74
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.74
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.73
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.73
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.72
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.72
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.71
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.7
3io5_A	333	Recombination and repair protein; storage dimer, i	96.68
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.67
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.67
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.65
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.64
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.64
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.63
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.63
3ice_A	422	Transcription termination factor RHO; transcriptio	96.62
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.62
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.62
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.61
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	96.6
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.6
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.59
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.58
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	96.58
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.57

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=100.00  E-value=2.8e-36  Score=216.83  Aligned_cols=175  Identities=45%  Similarity=0.740  Sum_probs=159.7

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      ..++++|+|.|||||||+|+|+.|++++++.+++.+|++|+.+..+++.+..+..++..|..+|+++...++...+.+..
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~  105 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLV  105 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999886533


Q ss_pred             --CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHH
Q 029252           98 --NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQY  173 (196)
Q Consensus        98 --~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  173 (196)
                        ..+||+||||++..+...|.. ....++.+++|++|++++.+|+..|  ..+|.+++++.+++|++.|+....|++++
T Consensus       106 ~~~~g~ilDGfPRt~~Qa~~l~~-~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~  184 (217)
T 3umf_A          106 DKNCHFLIDGYPRELDQGIKFEK-EVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEH  184 (217)
T ss_dssp             TTCSEEEEETBCSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             ccccCcccccCCCcHHHHHHHHH-hCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence              678999999999999999988 7788999999999999999999999  45788899999999999999999999999


Q ss_pred             HHhcCcEEEEeCCCCceeEE
Q 029252          174 YEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       174 ~~~~~~~~~id~~~~~e~v~  193 (196)
                      |...+.++.||++.++++|+
T Consensus       185 Y~~~~~l~~Idg~~~~eeV~  204 (217)
T 3umf_A          185 YKQQNKVITIDASGTVDAIF  204 (217)
T ss_dssp             HHTTTCEEEEETTSCHHHHH
T ss_pred             HHhcCCEEEEECCCCHHHHH
Confidence            99988999999999998875

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=100.00  E-value=1.7e-34  Score=206.67  Aligned_cols=170  Identities=31%  Similarity=0.659  Sum_probs=156.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (196)
                      ++|+|.|||||||+|+|+.|++++++.+++.+|++|+.+..++..+.....++..|..+|+++...++...+.+  ..+|
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~--~~~~   78 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK--HGNV   78 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS--SSCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc--CCce
Confidence            57899999999999999999999999999999999999999999999999999999999999999999998864  5679


Q ss_pred             EEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhc----cC------------------CCCCCcHHHH
Q 029252          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQ------------------GREDDNVETI  156 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R----~~------------------~r~~~~~~~~  156 (196)
                      |+||||++..++..|...   ....++.+++|++|++++.+|+..|    .+                  .|.+++++.+
T Consensus        79 ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i  158 (206)
T 3sr0_A           79 IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVI  158 (206)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHH
T ss_pred             EecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHH
Confidence            999999999999887543   5677899999999999999999998    11                  3678899999


Q ss_pred             HHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          157 RKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      ++|++.|+..+.+++++|...+.++.||++.++++|+
T Consensus       159 ~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~  195 (206)
T 3sr0_A          159 KKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVY  195 (206)
T ss_dssp             HHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence            9999999999999999999988999999999998875

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=100.00  E-value=5.8e-33  Score=200.09  Aligned_cols=173  Identities=32%  Similarity=0.581  Sum_probs=150.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-ND   99 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~   99 (196)
                      .+...|.|+|||||||+|+.|++++++.++++++++++....+++.+..+..++..|..+++++...++.+.+.+.+ ..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~   87 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCAN   87 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTT
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCC
Confidence            36789999999999999999999999999999999999988899999999999999999999999999999987643 67


Q ss_pred             eEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc----cC-------------------------CCCC
Q 029252          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----NQ-------------------------GRED  150 (196)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R----~~-------------------------~r~~  150 (196)
                      +||+||||++..+...|.+ ....++.+|+|++|++++.+|+..|    .+                         .|.+
T Consensus        88 g~ILDGfPRt~~Qa~~L~~-~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~D  166 (230)
T 3gmt_A           88 GYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDD  166 (230)
T ss_dssp             CEEEESCCCSHHHHHHHHH-TTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGG
T ss_pred             CeEecCCCCcHHHHHHHHH-hCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCC
Confidence            8999999999999998887 7778999999999999999999999    22                         2788


Q ss_pred             CcHHHHHHHHHHHHhcchhHHHHHHhc-----------CcEEEEeCCCCceeEEe
Q 029252          151 DNVETIRKRFKVFLESSLPVVQYYEAK-----------GKVRKVIFCSPIFILVI  194 (196)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~id~~~~~e~v~~  194 (196)
                      ++++.+++|++.|+..+.|++++|...           +.+..||++.++++|+.
T Consensus       167 D~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~  221 (230)
T 3gmt_A          167 DKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRA  221 (230)
T ss_dssp             GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC---------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHH
Confidence            999999999999999999999999873           68999999999999875

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.97  E-value=9.4e-30  Score=187.11  Aligned_cols=175  Identities=33%  Similarity=0.586  Sum_probs=155.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-   97 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-   97 (196)
                      .++++|+|+|+|||||||+|+.|+++++..+++.+++++.....+++.+..+..++..+..+++.+...++...+.... 
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~  106 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQC  106 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcccc
Confidence            4678999999999999999999999999999999999999888888899999999999999999998888888886533 


Q ss_pred             CCeEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc----C------------------------
Q 029252           98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN----Q------------------------  146 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~----~------------------------  146 (196)
                      +.+||+||+|....+...+.++   ....++.+++|++|++++.+|+.+|.    +                        
T Consensus       107 ~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l  186 (243)
T 3tlx_A          107 KKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPL  186 (243)
T ss_dssp             SSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred             cCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccccc
Confidence            7889999999999888776543   45678999999999999999999982    1                        


Q ss_pred             -CCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          147 -GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       147 -~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                       .|.+++++.+++|+..|+....++.++|...+.++.||++.++++|+
T Consensus       187 ~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~  234 (243)
T 3tlx_A          187 IQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLE  234 (243)
T ss_dssp             BCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHH
Confidence             35678899999999999999999999999888899999999998765

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.96  E-value=3e-28  Score=176.17  Aligned_cols=172  Identities=32%  Similarity=0.576  Sum_probs=151.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~  100 (196)
                      +.|+|+|+|||||||+|+.|++++++.+++.|++++.....+++.+..+..++..+..+++.....++...+.... +..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~   80 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG   80 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence            3589999999999999999999999999999999999988888899999999999999999888888888876533 788


Q ss_pred             EEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc-----------------------------CCC
Q 029252          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR  148 (196)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-----------------------------~~r  148 (196)
                      +|+||+|....+...+...   ....++.+|+|++|++++.+|+.+|.                             .+|
T Consensus        81 ~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r  160 (216)
T 3dl0_A           81 FLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR  160 (216)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCC
Confidence            9999999998887766543   45568999999999999999999881                             145


Q ss_pred             CCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      .+++++.+++|+..|.....++.++|...+.++.||++.++++++
T Consensus       161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~  205 (216)
T 3dl0_A          161 ADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVY  205 (216)
T ss_dssp             TTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence            778899999999999999999999999888899999999988764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.96  E-value=5.8e-28  Score=174.65  Aligned_cols=172  Identities=31%  Similarity=0.605  Sum_probs=150.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~  100 (196)
                      +.|+|+|+|||||||+|+.|++++++.+++.|++++.....+.+.+..+..++..+..+++.+...++...+.... +.+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~   80 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG   80 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence            3689999999999999999999999999999999999988888889999999999999999888888888876533 788


Q ss_pred             EEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc-----------------------------CCC
Q 029252          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR  148 (196)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-----------------------------~~r  148 (196)
                      +|+||+|....+...+...   ....++.+|+|++|++++.+|+.+|.                             .+|
T Consensus        81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r  160 (216)
T 3fb4_A           81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQR  160 (216)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccC
Confidence            9999999998887766543   45568999999999999999999881                             134


Q ss_pred             CCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      .+++++.+++|+..|.....++.++|...+.++.||++.++++++
T Consensus       161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~  205 (216)
T 3fb4_A          161 IDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVF  205 (216)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHH
Confidence            667889999999999999999999999888899999999988764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=8.1e-28  Score=174.06  Aligned_cols=173  Identities=32%  Similarity=0.600  Sum_probs=144.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-ND   99 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~   99 (196)
                      .+.|+|.|+|||||||+++.|++++++.+++.|++++.....+++.+..+..++..|..++++....++...+.... +.
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~   84 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCVN   84 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCC
Confidence            46899999999999999999999999999999999999888888888888888888888888888888887776433 77


Q ss_pred             eEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc-C----------------------------C
Q 029252          100 KFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-Q----------------------------G  147 (196)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-~----------------------------~  147 (196)
                      +||+||+|....+...+...   ....|+.+|||++|++++.+|+..|. .                            .
T Consensus        85 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~  164 (217)
T 3be4_A           85 GFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVW  164 (217)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBC
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccccccccc
Confidence            89999999998776665531   45678999999999999999999871 1                            1


Q ss_pred             CCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       148 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      +.++..+.+.+++..|+....+++++|...+.++.||++.++++|+
T Consensus       165 ~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~  210 (217)
T 3be4_A          165 RDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVT  210 (217)
T ss_dssp             CGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHH
Confidence            3345678889999999999999999998767899999999988765

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.96  E-value=2.4e-27  Score=171.87  Aligned_cols=174  Identities=26%  Similarity=0.534  Sum_probs=146.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH-hc-C
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-ES-G   97 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~   97 (196)
                      ++++|+|.|+|||||||+++.|+++++..+++.|++++.....+++.+..+..++..|...++.....++...+. .. .
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~   82 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPAC   82 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcccc
Confidence            457899999999999999999999999999999999999878888888888898988888899888888877765 22 2


Q ss_pred             CCeEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc-C---------------------------
Q 029252           98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-Q---------------------------  146 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-~---------------------------  146 (196)
                      +.+||+||++....+...+.++   ....++.+|||++|++++.+|+..|. .                           
T Consensus        83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l  162 (220)
T 1aky_A           83 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEAL  162 (220)
T ss_dssp             GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred             CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccccc
Confidence            5689999999888776655432   45678999999999999999998872 1                           


Q ss_pred             -CCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          147 -GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       147 -~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                       .|.+++.+.+++|+..|+....+++++|...+.++.||++.++++|+
T Consensus       163 ~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~  210 (220)
T 1aky_A          163 VQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVW  210 (220)
T ss_dssp             BCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHH
Confidence             24556678899999999999999999998767799999999988764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.96  E-value=1.6e-27  Score=172.16  Aligned_cols=170  Identities=36%  Similarity=0.638  Sum_probs=146.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF  101 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~  101 (196)
                      .|+|.|+|||||||+++.|++++++.+++.|+++++....+++.+..+..++..+..+++.....++...+.... ..+|
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~   81 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGF   81 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCE
Confidence            589999999999999999999999999999999999888888888888888888888888888888888776432 4679


Q ss_pred             EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc-C----------------------------CCCCCc
Q 029252          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-Q----------------------------GREDDN  152 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~-~----------------------------~r~~~~  152 (196)
                      |+||++....+...+.. ....++.+|||++|++++.+|+..|. .                            .|.++.
T Consensus        82 i~dg~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd~  160 (214)
T 1e4v_A           82 LLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ  160 (214)
T ss_dssp             EEESCCCSHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTCS
T ss_pred             EEeCCCCCHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCCC
Confidence            99999998888777766 56678999999999999999998872 1                            366777


Q ss_pred             HHHHHHHHHHHHhcchhHHHHHHhc-----CcEEEEeCCCCceeEE
Q 029252          153 VETIRKRFKVFLESSLPVVQYYEAK-----GKVRKVIFCSPIFILV  193 (196)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~id~~~~~e~v~  193 (196)
                      .+.+++|+..|+....+++++|...     ..++.||++.++++|+
T Consensus       161 ~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~  206 (214)
T 1e4v_A          161 EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVR  206 (214)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHH
Confidence            8899999999999999999999754     5799999999988764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.96  E-value=4.3e-27  Score=172.01  Aligned_cols=174  Identities=32%  Similarity=0.586  Sum_probs=146.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-C
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-N   98 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~   98 (196)
                      .++.|+|.|+|||||||+++.|++++++.+++.++++++....++..+..+..++..+..++++....++...+.... +
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~   94 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCK   94 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccc
Confidence            457899999999999999999999999999999999999877788888888898988888899888888888776432 5


Q ss_pred             CeEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc-C-----------------------C----
Q 029252           99 DKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-Q-----------------------G----  147 (196)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-~-----------------------~----  147 (196)
                      .+||+|||+....+...+.++   ....++.+|||++|++++.+|+..|. .                       +    
T Consensus        95 ~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~  174 (233)
T 1ak2_A           95 NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLI  174 (233)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBCE
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccccccc
Confidence            679999999988776655432   34568999999999999999999882 1                       1    


Q ss_pred             -CCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          148 -REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       148 -r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                       |.++..+.+++|+..|+....+++++|...+.++.||++.++++|+
T Consensus       175 ~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~  221 (233)
T 1ak2_A          175 RRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVF  221 (233)
T ss_dssp             ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence             4556778899999999988888889998766789999999988764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.96  E-value=5.8e-27  Score=166.37  Aligned_cols=177  Identities=53%  Similarity=0.889  Sum_probs=146.8

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (196)
                      ...++.+|+|+|+|||||||+++.|++++++.+++.|++++.....+.+.+..+...+..+...+.......+...+...
T Consensus         2 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~   81 (194)
T 1qf9_A            2 EKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN   81 (194)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Confidence            34567899999999999999999999999999999999999887677788888888888888888887777887777654


Q ss_pred             CCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHH
Q 029252           97 GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQ  172 (196)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~  172 (196)
                      .+..+|+||++....+...+...  ....++++|||++|++++.+|+..|  ..++.+++.+.+.+|+..+.....++.+
T Consensus        82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~  161 (194)
T 1qf9_A           82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVID  161 (194)
T ss_dssp             TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHH
T ss_pred             CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence            57889999999988777666542  2236788999999999999999998  2356677788899999998888888888


Q ss_pred             HHHhcCcEEEEeCCCCceeEE
Q 029252          173 YYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       173 ~~~~~~~~~~id~~~~~e~v~  193 (196)
                      .|.....+++||++.++++++
T Consensus       162 ~~~~~~~~~~id~~~~~~~~~  182 (194)
T 1qf9_A          162 HYNKFDKVKIIPANRDVNEVY  182 (194)
T ss_dssp             HHHHTTCEEEEECSSCHHHHH
T ss_pred             HHHhCCCEEEEECCCCHHHHH
Confidence            887666678999998887654

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.96  E-value=5.1e-27  Score=167.95  Aligned_cols=173  Identities=30%  Similarity=0.586  Sum_probs=141.8

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (196)
                      .+.++++|+|+|+|||||||+++.|++.+++.+++.|++++.....+...+..+...+..+...++......+...+...
T Consensus        16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~   95 (201)
T 2cdn_A           16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP   95 (201)
T ss_dssp             CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc
Confidence            45567899999999999999999999999999999999999877777777888888888888888877777776665432


Q ss_pred             -CCCeEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHH
Q 029252           97 -GNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ  172 (196)
Q Consensus        97 -~~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~  172 (196)
                       .+.+||+|+++....+...+..+   ....++.+|||++|++++.+|+.+|  ++.+++.+.+.+++..|.....++.+
T Consensus        96 ~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R--~r~~~~~e~~~~r~~~~~~~~~~~~~  173 (201)
T 2cdn_A           96 DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVILNRMKVYRDETAPLLE  173 (201)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH--CCTTCSHHHHHHHHHHHHHHTTTHHH
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence             26679999999888766555432   3456889999999999999999999  67667788899999999887778877


Q ss_pred             HHHhcCcEEEEeCCCCceeEE
Q 029252          173 YYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       173 ~~~~~~~~~~id~~~~~e~v~  193 (196)
                      +|  ...+++||++.++++++
T Consensus       174 ~~--~~~~~~Id~~~~~eev~  192 (201)
T 2cdn_A          174 YY--RDQLKTVDAVGTMDEVF  192 (201)
T ss_dssp             HT--TTTEEEEECCSCHHHHH
T ss_pred             Hh--cCcEEEEeCCCCHHHHH
Confidence            77  34588999998888764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.96  E-value=1.1e-26  Score=165.34  Aligned_cols=173  Identities=43%  Similarity=0.819  Sum_probs=142.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G   97 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~   97 (196)
                      ++.+|+|.|+|||||||+++.|+++++..+++.|++++.....++..+..+...+..|..++.......+...+...  .
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~   87 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNT   87 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcccc
Confidence            45789999999999999999999999999999999999877777778888888888888888877766666655432  3


Q ss_pred             CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHHHH
Q 029252           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (196)
                      +..+|+||++....+...+.. ....++.+|||++|++++.+|+..|  ..++.+.+.+.+.+|+..+.....++.+.|.
T Consensus        88 ~~~vi~d~~~~~~~~~~~~~~-~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  166 (196)
T 2c95_A           88 SKGFLIDGYPREVQQGEEFER-RIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYE  166 (196)
T ss_dssp             CSCEEEESCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999998887776665 4466889999999999999999988  2345556678888999999888888888887


Q ss_pred             hcCcEEEEeCCCCceeEE
Q 029252          176 AKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       176 ~~~~~~~id~~~~~e~v~  193 (196)
                      ....++.||++.++++++
T Consensus       167 ~~~~~~~Id~~~~~e~v~  184 (196)
T 2c95_A          167 KRGIVRKVNAEGSVDSVF  184 (196)
T ss_dssp             HHTCEEEEECCSCHHHHH
T ss_pred             hcCcEEEEECCCCHHHHH
Confidence            666678899998887664

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.95  E-value=1.1e-26  Score=168.83  Aligned_cols=172  Identities=27%  Similarity=0.489  Sum_probs=143.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (196)
                      ++|+|.|+|||||||+++.|++++++.+++.|++++.....+++.+..+..++..|...++.....++...+....+..|
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~v   80 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGW   80 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeE
Confidence            46999999999999999999999999999999999998667777888888888888888888888888887764337889


Q ss_pred             EEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc-----CC--------------------------
Q 029252          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----QG--------------------------  147 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-----~~--------------------------  147 (196)
                      |+||++....+...+.+.   ....|+.+|||++|++++.+|+..|.     +|                          
T Consensus        81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~  160 (223)
T 2xb4_A           81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSA  160 (223)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEEC
T ss_pred             EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccccccccc
Confidence            999999988777666542   35678999999999999999999882     11                          


Q ss_pred             CCCCcHH-HHHHHHHHHHhcchhHHH---HHHh-----cCcEEEEeCCCCceeEE
Q 029252          148 REDDNVE-TIRKRFKVFLESSLPVVQ---YYEA-----KGKVRKVIFCSPIFILV  193 (196)
Q Consensus       148 r~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~id~~~~~e~v~  193 (196)
                      +.+++.+ .+++|+..|+....++.+   .|..     .+.++.||++.++++|+
T Consensus       161 r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~  215 (223)
T 2xb4_A          161 RADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIK  215 (223)
T ss_dssp             CGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHH
Confidence            2233456 899999999999999988   8876     56789999999988765

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.95  E-value=6.4e-26  Score=162.41  Aligned_cols=177  Identities=49%  Similarity=0.906  Sum_probs=142.3

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH-cCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   94 (196)
                      ..+.++.+|+|+|+|||||||+++.|++++++.+++.|++++.... .+...++.+..++..|...++.+...++...+.
T Consensus        10 ~~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~   89 (203)
T 1ukz_A           10 FSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS   89 (203)
T ss_dssp             SCTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence            3445668999999999999999999999999999999999988654 466777888888877887777766665555443


Q ss_pred             h---cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchh
Q 029252           95 E---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLP  169 (196)
Q Consensus        95 ~---~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~  169 (196)
                      .   .....+|+||++...++...+.. ....++.+|||++|++++.+|+..|  ..++.+++.+.+.+|+..|.....+
T Consensus        90 ~~l~~g~~~~i~dg~~~~~~~~~~~~~-~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~  168 (203)
T 1ukz_A           90 DNVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMP  168 (203)
T ss_dssp             HHHHTTCCEEEEETCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHH
T ss_pred             hhhccCCCeEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHH
Confidence            2   12368999999998887777666 4455899999999999999999988  2356667788899999999888888


Q ss_pred             HHHHHHhcCcEEEEeCCCCceeEE
Q 029252          170 VVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       170 ~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      +.++|.....++.||++.++++++
T Consensus       169 ~~~~~~~~~~vi~id~~~~~e~v~  192 (203)
T 1ukz_A          169 VIEYFETKSKVVRVRCDRSVEDVY  192 (203)
T ss_dssp             HHHHHHTTTCEEEEECSSCHHHHH
T ss_pred             HHHHHHhcCcEEEEECCCCHHHHH
Confidence            888887666788899999888764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.95  E-value=4.1e-26  Score=162.22  Aligned_cols=174  Identities=52%  Similarity=0.910  Sum_probs=138.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH----
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME----   94 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----   94 (196)
                      ++.+|+|.|+|||||||+++.|++++++.+++.|++++..... ++..+..+...+..+...+..+...++...+.    
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   81 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA   81 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence            4689999999999999999999999999999999999887654 45667777777777877777665544443332    


Q ss_pred             hc-CCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchh
Q 029252           95 ES-GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLP  169 (196)
Q Consensus        95 ~~-~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~  169 (196)
                      .. .+..||+||++....+...+...  ....++.+|||++|++++.+|+.+|  ..+|.+.+.+.+.+++..|.....+
T Consensus        82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~  161 (196)
T 1tev_A           82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKP  161 (196)
T ss_dssp             HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHH
Confidence            11 37789999999988766555432  2235778999999999999999988  3467777888889999999999889


Q ss_pred             HHHHHHhcCcEEEEeCCCCceeEE
Q 029252          170 VVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       170 ~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      +.++|...+.++.||++.++++++
T Consensus       162 ~~~~y~~~~~~~~id~~~~~~~v~  185 (196)
T 1tev_A          162 IIDLYEEMGKVKKIDASKSVDEVF  185 (196)
T ss_dssp             HHHHHHHTTCEEEEETTSCHHHHH
T ss_pred             HHHHHHhcCCEEEEECCCCHHHHH
Confidence            888898777788999998888764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.95  E-value=9.8e-27  Score=166.01  Aligned_cols=173  Identities=39%  Similarity=0.750  Sum_probs=139.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G   97 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~   97 (196)
                      ++++|+|.|+|||||||+++.|++++++.+++.|++++.....+.+.+..+...+..|...+.......+...+...  .
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~   90 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD   90 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence            45789999999999999999999999999999999999887667777778888888888888877777776655433  4


Q ss_pred             CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccC--CCCCCcHHHHHHHHHHHHhcchhHHHHHH
Q 029252           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYE  175 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (196)
                      +..+|+||++....+...+.. ....++++|||++|++++.+|+.+|..  ++.+++.+.+.+|+..+.....++.++|.
T Consensus        91 ~~~vi~dg~~~~~~~~~~l~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  169 (199)
T 2bwj_A           91 TRGFLIDGYPREVKQGEEFGR-RIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYE  169 (199)
T ss_dssp             CSCEEEETCCSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999998887777665 444688999999999999999999821  23333456788888888888888777887


Q ss_pred             hcCcEEEEeCCCCceeEE
Q 029252          176 AKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       176 ~~~~~~~id~~~~~e~v~  193 (196)
                      ....+++||++.++++++
T Consensus       170 ~~~~~~~id~~~~~e~v~  187 (199)
T 2bwj_A          170 TKTQLHKINAEGTPEDVF  187 (199)
T ss_dssp             HHSEEEEEETTSCHHHHH
T ss_pred             hcCCEEEEECCCCHHHHH
Confidence            666678999988887764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.94  E-value=1e-25  Score=164.09  Aligned_cols=171  Identities=32%  Similarity=0.579  Sum_probs=140.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   99 (196)
                      ++++|+|.|+|||||||+++.|+++++..+++.|++++.....+++.+..+..++..|...++.....++.+.+....+.
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~~   85 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQY   85 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccCC
Confidence            45789999999999999999999999999999999999987777878888888888888888877777676666532367


Q ss_pred             eEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc----CC-------------------------CCC
Q 029252          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN----QG-------------------------RED  150 (196)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~----~~-------------------------r~~  150 (196)
                      .||+|+++....+...+..  ...++.+|||++|++++.+|+..|.    .+                         |.+
T Consensus        86 ~~vid~~~~~~~~~~~l~~--~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~~  163 (227)
T 1zd8_A           86 SWLLDGFPRTLPQAEALDR--AYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQRED  163 (227)
T ss_dssp             CEEEESCCCSHHHHHHHHT--TSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGG
T ss_pred             CEEEeCCCCCHHHHHHHHH--hcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCCC
Confidence            8999999988777665554  2567899999999999999998771    12                         334


Q ss_pred             CcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          151 DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      +..+.+.+|+..|.....++.++|...+.++.||++ ++++++
T Consensus       164 ~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~  205 (227)
T 1zd8_A          164 DKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIW  205 (227)
T ss_dssp             GSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHH
Confidence            567889999999999999999999876779999998 877764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.94  E-value=1e-25  Score=159.11  Aligned_cols=170  Identities=34%  Similarity=0.654  Sum_probs=137.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   99 (196)
                      ++.+|+|.|+|||||||+++.|++++++.+++.|++++.....+.+.+..+...+..+...++......+...+.    .
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----~   78 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----E   78 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC----S
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc----C
Confidence            357899999999999999999999999999999999998877777778888888888888888776666666553    2


Q ss_pred             eEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhcchhHHHHH
Q 029252          100 KFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN--QGREDDNVETIRKRFKVFLESSLPVVQYY  174 (196)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (196)
                      ++|+||++....+...+..+   .+..++.+|||++|++++.+|+..|.  .++.+.+.+.+.+|+..+.....++.+.|
T Consensus        79 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~  158 (186)
T 3cm0_A           79 RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYY  158 (186)
T ss_dssp             EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            49999999887765544321   23347899999999999999999882  25677788889999988887777777888


Q ss_pred             HhcCcEEEEeCCCCceeEE
Q 029252          175 EAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       175 ~~~~~~~~id~~~~~e~v~  193 (196)
                      ...+.++.||++.++++++
T Consensus       159 ~~~~~~~~id~~~~~~~v~  177 (186)
T 3cm0_A          159 EARGVLKRVDGLGTPDEVY  177 (186)
T ss_dssp             HHTTCEEEEECCSCHHHHH
T ss_pred             HhcCcEEEEECCCCHHHHH
Confidence            7655688999998888764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.94  E-value=1.5e-25  Score=162.66  Aligned_cols=171  Identities=32%  Similarity=0.616  Sum_probs=138.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G   97 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~   97 (196)
                      ++++|+|.|+|||||||+++.|+++++..+++.|++++.....++..+..+..++..|...++.....++.+.+...  .
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ   83 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhcccc
Confidence            45789999999999999999999999999999999999877778888888888888888888887777676665422  1


Q ss_pred             CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc-C------------------------CCCCCc
Q 029252           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-Q------------------------GREDDN  152 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~-~------------------------~r~~~~  152 (196)
                      ..++|+||++...++...+.. ....++++|||++|++++.+|+..|. .                        .+.++.
T Consensus        84 ~~~~vidg~~~~~~~~~~l~~-~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~  162 (222)
T 1zak_A           84 ENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDT  162 (222)
T ss_dssp             HTCEEEESCCCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCC
T ss_pred             CCcEEEECCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCC
Confidence            467888999998877777766 56678999999999999999998771 1                        123455


Q ss_pred             HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      .+.+.+|+..++....++.+.|..  .++.||++.++++++
T Consensus       163 ~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~  201 (222)
T 1zak_A          163 EEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVF  201 (222)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHH
Confidence            678888998888877787777743  488999999888764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.86  E-value=1.1e-19  Score=133.58  Aligned_cols=171  Identities=31%  Similarity=0.583  Sum_probs=130.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   99 (196)
                      ++.+|+|.|++||||||+++.|+++++...++.+++++.........+..+...+..+...+.......+...+....+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~  105 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ  105 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence            46799999999999999999999999999999999988765544455556666666777777766666666555433456


Q ss_pred             eEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-c---CC-------------------------CCC
Q 029252          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N---QG-------------------------RED  150 (196)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~---~~-------------------------r~~  150 (196)
                      .++++|++....+...+..  ...++.++||++|++++.+|+..| .   .+                         +..
T Consensus       106 ~~il~g~~~~~~~~~~l~~--~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~  183 (246)
T 2bbw_A          106 HWLLDGFPRTLGQAEALDK--ICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQED  183 (246)
T ss_dssp             CEEEESCCCSHHHHHHHHT--TCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGG
T ss_pred             eEEEECCCCCHHHHHHHHh--hcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCC
Confidence            7889998877655444443  245789999999999999999876 1   11                         223


Q ss_pred             CcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          151 DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      ...+.+.+++..|.....++.++|...+.++.||++.+ ++|+
T Consensus       184 ~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~  225 (246)
T 2bbw_A          184 DKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIW  225 (246)
T ss_dssp             GSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHH
T ss_pred             CcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHH
Confidence            45678888999998888888899987778999999987 6553

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.85  E-value=1.3e-19  Score=126.40  Aligned_cols=160  Identities=16%  Similarity=0.197  Sum_probs=107.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCC----cchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS----ENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      ++|+|.|+|||||||+++.| +++++.+++.+++++.......    ............   .........+...+....
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~   77 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGTSN   77 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHhcC
Confidence            68999999999999999999 9999999999999998755421    112222222211   112234455555553345


Q ss_pred             CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCC--CCcHHHHHHHHHHHHhcchhHHHHHH
Q 029252           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRE--DDNVETIRKRFKVFLESSLPVVQYYE  175 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (196)
                      +..+|+||+ ....+...+.+ ....++.+|||++|++++.+|+..|  +++  ..+.+.+.+++.....  .+ ...|.
T Consensus        78 ~~~vi~dg~-~~~~~~~~l~~-~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~r~~~~~~--~~-~~~~~  150 (179)
T 3lw7_A           78 HDLVVFDGV-RSLAEVEEFKR-LLGDSVYIVAVHSPPKIRYKRMIER--LRSDDSKEISELIRRDREELK--LG-IGEVI  150 (179)
T ss_dssp             CSCEEEECC-CCHHHHHHHHH-HHCSCEEEEEEECCHHHHHHHHHTC--C----CCCHHHHHHHHHHHHH--HT-HHHHH
T ss_pred             CCeEEEeCC-CCHHHHHHHHH-HhCCCcEEEEEECCHHHHHHHHHhc--cCCCCcchHHHHHHHHHhhhc--cC-hHhHH
Confidence            888999998 88888787777 4446788999999999999999999  432  3556667666533221  11 22333


Q ss_pred             hcCcEEEEeCCCCceeEE
Q 029252          176 AKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       176 ~~~~~~~id~~~~~e~v~  193 (196)
                      .... ++||++.++++++
T Consensus       151 ~~ad-~vId~~~~~~~~~  167 (179)
T 3lw7_A          151 AMAD-YIITNDSNYEEFK  167 (179)
T ss_dssp             HTCS-EEEECCSCHHHHH
T ss_pred             HhCC-EEEECCCCHHHHH
Confidence            3333 4677777777653

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.77  E-value=1.3e-17  Score=116.80  Aligned_cols=136  Identities=20%  Similarity=0.286  Sum_probs=90.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH-HhCCcEecHHHHHHHHHHcCCc-----chHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE-HFGYTHLSAGDLLRAEIKSGSE-----NGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~-~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (196)
                      ||.+|+|.|+|||||||+++.|++ .+++.+++.|. ++......+.     +.......       ........+...+
T Consensus         1 M~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~-~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l   72 (181)
T 1ly1_A            1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSIL   72 (181)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHH-HHHHhhCCCccchhhhchhhhhH-------HHHHHHHHHHHHH
Confidence            467899999999999999999999 68899999855 4444333211     11111110       1122344455555


Q ss_pred             Hh-cCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029252           94 EE-SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE  165 (196)
Q Consensus        94 ~~-~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~  165 (196)
                      .. ..+..+|+|+++....+...+.++  ....+..+|||++|++++.+|+..|  +....+.+.+.++++.|..
T Consensus        73 ~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~i~~~~~~~~~  145 (181)
T 1ly1_A           73 YGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMRE  145 (181)
T ss_dssp             TSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC--GGGCCCHHHHHHHHHHHHH
T ss_pred             hhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcc--ccCCCCHHHHHHHHHHhhc
Confidence            22 247899999988877666655532  1122346999999999999999998  3335567778887777764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.77  E-value=1.8e-17  Score=118.30  Aligned_cols=151  Identities=16%  Similarity=0.220  Sum_probs=98.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHH---HHHHHHHHHHhc
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV---TIKLLQKAMEES   96 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~   96 (196)
                      ++++|+|.|+|||||||+++.|++.++..+++.|++.....          ......+.......   ....+.+.+  .
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~~--~   84 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGERL--A   84 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHHH--T
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHHH--h
Confidence            45789999999999999999999999999999887642210          00111122222211   122333333  2


Q ss_pred             CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (196)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (196)
                      .+..+|+|+..........+.. ....+..+|||++|++++.+|+.+|  ++.....+.+..++..+.    ++   + .
T Consensus        85 ~~~~vivd~~~~~~~~~~~l~~-~~~~~~~vi~l~~~~e~~~~Rl~~R--~~~~~~~~~~~~~~~~~~----~~---~-~  153 (202)
T 3t61_A           85 SREPVVVSCSALKRSYRDKLRE-SAPGGLAFVFLHGSESVLAERMHHR--TGHFMPSSLLQTQLETLE----DP---R-G  153 (202)
T ss_dssp             SSSCCEEECCCCSHHHHHHHHH-TSTTCCEEEEEECCHHHHHHHHHHH--HSSCCCHHHHHHHHHHCC----CC---T-T
T ss_pred             cCCCEEEECCCCCHHHHHHHHH-hcCCCeEEEEEeCCHHHHHHHHHHh--hccCCCHHHHHHHHHhcC----CC---C-C
Confidence            4778999988777777777776 4455678999999999999999999  222223444444443332    21   1 2


Q ss_pred             cCcEEEEeCCCCceeEE
Q 029252          177 KGKVRKVIFCSPIFILV  193 (196)
Q Consensus       177 ~~~~~~id~~~~~e~v~  193 (196)
                      ....++||++.++++++
T Consensus       154 ~~~~~~Id~~~~~~e~~  170 (202)
T 3t61_A          154 EVRTVAVDVAQPLAEIV  170 (202)
T ss_dssp             STTEEEEESSSCHHHHH
T ss_pred             CCCeEEEeCCCCHHHHH
Confidence            22477899998887654

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.77  E-value=3.1e-17  Score=117.11  Aligned_cols=159  Identities=16%  Similarity=0.270  Sum_probs=92.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH------------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT------------   85 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------   85 (196)
                      |+.+|++.|+.||||||+++.|++.+  +..++....      +++++.++.+...+..+...+....            
T Consensus         1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~   74 (205)
T 4hlc_A            1 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHL   74 (205)
T ss_dssp             -CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999998  343332211      2345556666666655554443221            


Q ss_pred             HHHHHHHHHhcCCCeEEEeccC------------CCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCC
Q 029252           86 IKLLQKAMEESGNDKFLIDGFP------------RNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (196)
Q Consensus        86 ~~~~~~~l~~~~~~~~iidg~~------------~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~  151 (196)
                      ...+...+.  .+..||.|.|.            ...+....+...  ....||++|||++|++++.+|+.+|  ++..+
T Consensus        75 ~~~i~p~l~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r--~~~~d  150 (205)
T 4hlc_A           75 VLKVIPALK--EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN--SRDQN  150 (205)
T ss_dssp             HHTHHHHHH--TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC--------
T ss_pred             HHHHHHHHH--cCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhc--CCccc
Confidence            112222333  47888889642            112222333221  4578999999999999999999988  33211


Q ss_pred             ---c-HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          152 ---N-VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       152 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                         . ...+.+++...   +..+.+.  ....+.+||++.++++|.
T Consensus       151 r~e~~~~~f~~~v~~~---Y~~l~~~--~~~~~~~IDa~~~~e~V~  191 (205)
T 4hlc_A          151 RLDQEDLKFHEKVIEG---YQEIIHN--ESQRFKSVNADQPLENVV  191 (205)
T ss_dssp             -CCHHHHHHHHHHHHH---HHHHHHS--CCTTEEEEETTSCHHHHH
T ss_pred             chhccCHHHHHHHHHH---HHHHHHh--CCCCEEEEECCCCHHHHH
Confidence               1 11222332211   1122211  233699999999998764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.76  E-value=3.2e-17  Score=119.16  Aligned_cols=162  Identities=19%  Similarity=0.294  Sum_probs=97.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHH-------
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-------   89 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   89 (196)
                      .++.+|+|.|+|||||||+++.|++.++  ..++...      .+.+++.++.+..++..+.........-++       
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~   97 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREH   97 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999986  3444321      123445566667766655533322211111       


Q ss_pred             -----HHHHHhcCCCeEEEe----------ccCCCH--HHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhcc--CCC
Q 029252           90 -----QKAMEESGNDKFLID----------GFPRNE--ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN--QGR  148 (196)
Q Consensus        90 -----~~~l~~~~~~~~iid----------g~~~~~--~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~--~~r  148 (196)
                           ...+.  .+..||+|          |+++..  .....+...  ....|+.+|||++|++++.+|+.+|.  ..+
T Consensus        98 ~~~~i~~~l~--~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr  175 (229)
T 4eaq_A           98 LVLKVIPALK--EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNR  175 (229)
T ss_dssp             CCCCCHHHHH--TTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----C
T ss_pred             HHHHHHHHHH--CCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccc
Confidence                 11122  36789999          765443  332333322  56689999999999999999999981  122


Q ss_pred             CCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      .+.....+.+++...+.   .+.+.|  ...+++||++.++++++
T Consensus       176 ~e~~~~~~~~rv~~~y~---~l~~~~--~~~~~vIDa~~s~eev~  215 (229)
T 4eaq_A          176 LDQEDLKFHEKVIEGYQ---EIIHNE--SQRFKSVNADQPLENVV  215 (229)
T ss_dssp             CCHHHHHHHHHHHHHHH---HHTTTC--TTTEEEEETTSCHHHHH
T ss_pred             hhhhhHHHHHHHHHHHH---HHHHhC--CCCEEEEeCCCCHHHHH
Confidence            22223344444433322   222222  23689999999998764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.75  E-value=5.4e-17  Score=114.89  Aligned_cols=153  Identities=17%  Similarity=0.264  Sum_probs=91.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH-----------HH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------IK   87 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~   87 (196)
                      ++|+|+|+|||||||+++.|++++   ++.+++.+.      ......+..+...+..|...+....           ..
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~   74 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE   74 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999998   888887642      1223334445555544543333111           11


Q ss_pred             HHHHHHHhcCCCeEEEe----------ccCCCH--HHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252           88 LLQKAMEESGNDKFLID----------GFPRNE--ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (196)
Q Consensus        88 ~~~~~l~~~~~~~~iid----------g~~~~~--~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~  153 (196)
                      .+...+.  .+..+|+|          |++...  .....+..+  ....++.+|||++|++++.+|+.+|  ++.+ ..
T Consensus        75 ~i~~~l~--~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r--~~~~-~~  149 (195)
T 2pbr_A           75 KIIPDLK--RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK--NRFE-NK  149 (195)
T ss_dssp             THHHHHH--TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT--TCCC-CH
T ss_pred             HHHHHHh--CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc--Cccc-hH
Confidence            2222232  36778888          333322  222222211  2346899999999999999999876  4443 33


Q ss_pred             HHHHHHHH-HHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          154 ETIRKRFK-VFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       154 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      + +.+++. .|.    .....|   ..+++||++.++++++
T Consensus       150 ~-~~~~~~~~~~----~~~~~~---~~~~~Id~~~~~~~~~  182 (195)
T 2pbr_A          150 E-FLEKVRKGFL----ELAKEE---ENVVVIDASGEEEEVF  182 (195)
T ss_dssp             H-HHHHHHHHHH----HHHHHS---TTEEEEETTSCHHHHH
T ss_pred             H-HHHHHHHHHH----HHHhhC---CCEEEEECCCCHHHHH
Confidence            3 444442 232    222222   3578999988887654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.75  E-value=2.7e-17  Score=116.35  Aligned_cols=119  Identities=13%  Similarity=0.158  Sum_probs=74.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   99 (196)
                      ++.+|+|.|+|||||||+++.|++++++.+++.|++..................+..   .........+...+.  .+.
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~--~g~   78 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ--SGQ   78 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH--TTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh--CCC
Confidence            568999999999999999999999999999999776544322100001100000000   000111222333333  477


Q ss_pred             eEEEeccCCCHHHHHHH---HhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          100 KFLIDGFPRNEENRAAF---EAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       100 ~~iidg~~~~~~~~~~~---~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+|+|+++........+   .. ....++++|||++|++++.+|+.+|
T Consensus        79 ~vi~d~~~~~~~~~~~~~~l~~-~~~~~~~~v~l~~~~e~~~~R~~~R  125 (193)
T 2rhm_A           79 SLIMESNFRVDLDTERMQNLHT-IAPFTPIQIRCVASGDVLVERILSR  125 (193)
T ss_dssp             CEEEEECCCHHHHHHHHHHHHH-HSCCEEEEEEEECCHHHHHHHHHHH
T ss_pred             eEEEecCCCCHHHHHHHHHHHH-hcCCeEEEEEEeCCHHHHHHHHHHh
Confidence            89999987322122222   33 4556788999999999999999988

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=1.8e-17  Score=118.03  Aligned_cols=156  Identities=13%  Similarity=0.170  Sum_probs=94.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   99 (196)
                      +..+|+|.|+|||||||+++.|++.+++.+++.|++.....  +......+...   +......+...++....   ...
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g~~i~~~~~~~---~~~~~~~~e~~~l~~l~---~~~   95 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--HKTVGELFTER---GEAGFRELERNMLHEVA---EFE   95 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHHHH---HHHHHHHHHHHHHHHHT---TCS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--CCcHHHHHHhc---ChHHHHHHHHHHHHHHh---hcC
Confidence            45689999999999999999999999999999999887653  22222222111   11111112222333322   255


Q ss_pred             eEEEe---ccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHh-hc-cCCC-CCCcHHHHHHHHHHHHhcchhHHHH
Q 029252          100 KFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL-NR-NQGR-EDDNVETIRKRFKVFLESSLPVVQY  173 (196)
Q Consensus       100 ~~iid---g~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~-~R-~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~  173 (196)
                      .+|++   |.+...+....+..     ++.+|||++|++++.+|+. .| .++. .....+.+.+++........+   .
T Consensus        96 ~~vi~~ggg~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~---~  167 (199)
T 3vaa_A           96 NVVISTGGGAPCFYDNMEFMNR-----TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAP---F  167 (199)
T ss_dssp             SEEEECCTTGGGSTTHHHHHHH-----HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHH---H
T ss_pred             CcEEECCCcEEccHHHHHHHHc-----CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHH---H
Confidence            67777   34444444444443     5689999999999999998 44 1111 233445555655555543333   4


Q ss_pred             HHhcCcEEEEeCCC-CceeEE
Q 029252          174 YEAKGKVRKVIFCS-PIFILV  193 (196)
Q Consensus       174 ~~~~~~~~~id~~~-~~e~v~  193 (196)
                      |.. . .+.||++. ++++++
T Consensus       168 y~~-a-d~~Idt~~~s~ee~~  186 (199)
T 3vaa_A          168 YTQ-A-QYIFNADELEDRWQI  186 (199)
T ss_dssp             HTT-S-SEEEECCCCSSHHHH
T ss_pred             Hhh-C-CEEEECCCCCHHHHH
Confidence            544 3 35677765 777654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.73  E-value=5.4e-17  Score=112.75  Aligned_cols=140  Identities=14%  Similarity=0.139  Sum_probs=88.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (196)
                      ++|+|.|+|||||||+++.|++++++.+++.|.+.....    .    ....            ... ...+.  .+..+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~----~~~~------------~~~-~~~l~--~~~~v   58 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----G----NEKL------------FEH-FNKLA--DEDNV   58 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----C----HHHH------------HHH-HHHHT--TCCSE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----H----HHHH------------HHH-HHHHH--hCCCe
Confidence            479999999999999999999999999998876554421    0    0000            011 11222  35566


Q ss_pred             EEeccC---------------CCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhc
Q 029252          102 LIDGFP---------------RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES  166 (196)
Q Consensus       102 iidg~~---------------~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~  166 (196)
                      |.|.+.               ........+.. ....++.+|||++|++++.+|+.+|  +++....+.+....+.|.  
T Consensus        59 i~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~l~~~~e~~~~R~~~r--~r~~~~~~~~~~~~~~~~--  133 (173)
T 3kb2_A           59 IIDRFVYSNLVYAKKFKDYSILTERQLRFIED-KIKAKAKVVYLHADPSVIKKRLRVR--GDEYIEGKDIDSILELYR--  133 (173)
T ss_dssp             EEESCHHHHHHHTTTBTTCCCCCHHHHHHHHH-HHTTTEEEEEEECCHHHHHHHHHHH--SCSCCCHHHHHHHHHHHH--
T ss_pred             EEeeeecchHHHHHHHHHhhHhhHHHHHHHhc-cCCCCCEEEEEeCCHHHHHHHHHhc--CCcchhhhHHHHHHHHHH--
Confidence            667321               12223333333 3456889999999999999999998  555555444443333333  


Q ss_pred             chhHHHHHHhcCcEEEEeCC-CCceeEE
Q 029252          167 SLPVVQYYEAKGKVRKVIFC-SPIFILV  193 (196)
Q Consensus       167 ~~~~~~~~~~~~~~~~id~~-~~~e~v~  193 (196)
                        ...+.|.  ...++||++ .++++++
T Consensus       134 --~~~~~~~--~~~~~id~~~~~~~ev~  157 (173)
T 3kb2_A          134 --EVMSNAG--LHTYSWDTGQWSSDEIA  157 (173)
T ss_dssp             --HHHHTCS--SCEEEEETTTSCHHHHH
T ss_pred             --HHHhhcC--CCEEEEECCCCCHHHHH
Confidence              3333332  357899998 4887764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.73  E-value=7.2e-17  Score=121.90  Aligned_cols=161  Identities=19%  Similarity=0.225  Sum_probs=102.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCCc-----chHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSE-----NGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~-~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (196)
                      ||.+|+|.|+|||||||+++.|++++ ++.+++.|+ ++........     +......       .........+...+
T Consensus         1 M~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~-~r~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~l   72 (301)
T 1ltq_A            1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEERDEYKYTKKKEG-------IVTGMQFDTAKSIL   72 (301)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCCCC---CCHHHHH-------HHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccH-HHHHhccCCcccccccchhhhh-------HHHHHHHHHHHHHH
Confidence            46789999999999999999999985 889999984 5544332111     1100000       00122234444444


Q ss_pred             Hh-cCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhH
Q 029252           94 EE-SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV  170 (196)
Q Consensus        94 ~~-~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  170 (196)
                      .. ..+..+|+|+++....+...+.++  ....+..+|||++|.+++.+|+.+|  +....+.+.+.++++.|.......
T Consensus        73 ~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~e~i~~~~~~~~~~~~~~  150 (301)
T 1ltq_A           73 YGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMREYLGLP  150 (301)
T ss_dssp             TSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHC--GGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred             hhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhc--cCCCCCHHHHHHHHHHHhcccCCc
Confidence            21 247889999988887766665542  2223457999999999999999998  434556788888887776422110


Q ss_pred             HHHHH---hcCcEEEEeCCCCceeE
Q 029252          171 VQYYE---AKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       171 ~~~~~---~~~~~~~id~~~~~e~v  192 (196)
                        .|.   .....+.+|.+.+++++
T Consensus       151 --~~~~~~~~~~~i~iD~dgtl~~~  173 (301)
T 1ltq_A          151 --VYNGTPGKPKAVIFDVDGTLAKM  173 (301)
T ss_dssp             --CCCCCTTSCEEEEEETBTTTBCC
T ss_pred             --ceeccccccceEEEeCCCCcccc
Confidence              011   11246678887776654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.73  E-value=2.1e-16  Score=113.45  Aligned_cols=161  Identities=17%  Similarity=0.190  Sum_probs=97.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCCcchHHHHHHHHcCC--CCCH-HHH-------
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPS-EVT-------   85 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~-------   85 (196)
                      +++++|+|.|++||||||+++.|++.++   ..++....      +.+++.++.+..++..+.  .... ...       
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~------p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R   77 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTRE------PGGTPLAERIRELLLAPSDEPMAADTELLLMFAAR   77 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEES------SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccC------CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999999999884   33433211      235566677777776553  1222 111       


Q ss_pred             ----HHHHHHHHHhcCCCeEEEeccC------------CCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhcc-C
Q 029252           86 ----IKLLQKAMEESGNDKFLIDGFP------------RNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN-Q  146 (196)
Q Consensus        86 ----~~~~~~~l~~~~~~~~iidg~~------------~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~-~  146 (196)
                          ...+..++.  .+..+|.|.|.            ...+....+...  ....||++|||++|++++.+|+..|. .
T Consensus        78 ~~~~~~~i~p~l~--~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~  155 (213)
T 4edh_A           78 AQHLAGVIRPALA--RGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL  155 (213)
T ss_dssp             HHHHHHTHHHHHH--TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSC
T ss_pred             HHHHHHHHHHHHH--CCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence                112222333  47889999642            112333333321  46789999999999999999999882 1


Q ss_pred             CCCCCcHHHHHHHH-HHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          147 GREDDNVETIRKRF-KVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       147 ~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      .+.+.....+.+++ +.|.    .+.+.|  ...+++||++.+++++.
T Consensus       156 dr~E~~~~~~~~rv~~~y~----~l~~~~--~~~~~vIDa~~s~eeV~  197 (213)
T 4edh_A          156 DRFEQEDRRFFEAVRQTYL----QRAAQA--PERYQVLDAGLPLAEVQ  197 (213)
T ss_dssp             CTTTTSCHHHHHHHHHHHH----HHHHHC--TTTEEEEETTSCHHHHH
T ss_pred             CcccccHHHHHHHHHHHHH----HHHHHC--CCcEEEEeCCCCHHHHH
Confidence            22222112333333 3333    333333  24699999999998764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.73  E-value=3.1e-17  Score=118.58  Aligned_cols=161  Identities=15%  Similarity=0.188  Sum_probs=94.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH-------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-------   85 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   85 (196)
                      ++.+|+|.|++||||||+++.|++.++       ..++..    +.  +.+++.++.+++++..+...+....       
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R   97 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFAGR   97 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            468999999999999999999999884       333321    11  2355667777777766644333221       


Q ss_pred             ----HHHHHHHHHhcCCCeEEEeccCC------------CHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhcc-C
Q 029252           86 ----IKLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN-Q  146 (196)
Q Consensus        86 ----~~~~~~~l~~~~~~~~iidg~~~------------~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~-~  146 (196)
                          ...+...+.  .+..||+|.|..            ..+....+...  ....||++|||++|++++.+|+.+|. .
T Consensus        98 ~~~~~~~i~p~l~--~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~  175 (227)
T 3v9p_A           98 REHLALVIEPALA--RGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMP  175 (227)
T ss_dssp             HHHHHHTHHHHHH--TTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC
T ss_pred             HHHHHHHHHHHHH--cCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCc
Confidence                112223333  478899996421            12233333221  45789999999999999999999882 1


Q ss_pred             CCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       147 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      .+.+.....+.++....+   ..+.+.|  ...+++||++.++++|.
T Consensus       176 dr~E~~~~ef~~rv~~~Y---~~la~~~--~~~~~vIDa~~s~eeV~  217 (227)
T 3v9p_A          176 DKFESESDAFFARTRAEY---LRRAQEA--PHRFVIVDSSEPIAQIR  217 (227)
T ss_dssp             ---CCHHHHHHHHHHHHH---HHHHHHC--TTTEEEEETTSCHHHHH
T ss_pred             cchhhhhHHHHHHHHHHH---HHHHHHh--cCCEEEEeCCCCHHHHH
Confidence            222221223333332221   2333333  34699999999998764

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.72  E-value=1.5e-16  Score=112.38  Aligned_cols=160  Identities=16%  Similarity=0.185  Sum_probs=91.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHH-cCCcchHHHHHHHHcCCCCCH--HHHHH----HH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPS--EVTIK----LL   89 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~   89 (196)
                      ++|+|.|+|||||||+++.|+++++     +.+++.++++++... .....+.  ..   .+...+.  .....    .+
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~i   76 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR--DE---MRKLSVEKQKKLQIDAAKGI   76 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH--HH---HTTSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch--hh---hhcCCHHHHHHHHHHHHHHH
Confidence            4799999999999999999999997     788888888876652 2111110  00   0111111  11111    12


Q ss_pred             HHHHHhcCCCeEEEeccCCCHHH--------HHHHHhhcCCCCcEEEEEEcCHHHHHHH-Hhh--ccCCC-CCCcHHHHH
Q 029252           90 QKAMEESGNDKFLIDGFPRNEEN--------RAAFEAVTKIEPEFVLFFDCSEEEMERR-ILN--RNQGR-EDDNVETIR  157 (196)
Q Consensus        90 ~~~l~~~~~~~~iidg~~~~~~~--------~~~~~~~~~~~~~~~i~l~~~~~~~~~R-~~~--R~~~r-~~~~~~~~~  157 (196)
                      ...+....+..||+|+++....+        ...+.. .  .++.+|||++|++++.+| +.+  |  ++ +....+.+.
T Consensus        77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~-~--~~~~vi~l~~~~~~~~~rr~~~~~R--~~~~~~~~~~~~  151 (194)
T 1nks_A           77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE-I--NPSVIFLLEADPKIILSRQKRDTTR--NRNDYSDESVIL  151 (194)
T ss_dssp             HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH-H--CCSEEEEEECCHHHHHHHHHHCTTT--CCCCCCSHHHHH
T ss_pred             HHHhhccCCCEEEECCchhhccccccccCCCHHHHHh-c--CCCEEEEEeCCHHHHHHHHHhhccc--CCCCccCHHHHH
Confidence            22221125788999986321111        222332 1  478999999999998866 666  6  54 333333322


Q ss_pred             HHHHHHHhcchhHHHHHHhcCcEEEE-eCCCCceeEE
Q 029252          158 KRFKVFLESSLPVVQYYEAKGKVRKV-IFCSPIFILV  193 (196)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~i-d~~~~~e~v~  193 (196)
                      .+ +............|. ...+++| |++.++++++
T Consensus       152 ~~-~~~~~~~~~~~~~~~-~~~~~~I~d~~~~~e~v~  186 (194)
T 1nks_A          152 ET-INFARYAATASAVLA-GSTVKVIVNVEGDPSIAA  186 (194)
T ss_dssp             HH-HHHHHHHHHHHHHHH-TCEEEEEECCSSCHHHHH
T ss_pred             HH-HHHHHHHHHHHHHhc-CCcEEEEeCCCCCHHHHH
Confidence            11 112222223333332 2457888 9888887664

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.72  E-value=2.8e-16  Score=112.73  Aligned_cols=159  Identities=14%  Similarity=0.252  Sum_probs=95.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC---C-cEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCHH-HH----
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---Y-THLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE-VT----   85 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~---~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~----   85 (196)
                      ++.+|++.|++||||||+++.|++.+.   . .++..    +.  +.+++.++.+..++...     ...... ..    
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~   75 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT----RE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFY   75 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE----ES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee----eC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHH
Confidence            468999999999999999999999883   3 22211    11  23556667777776521     122221 11    


Q ss_pred             -------HHHHHHHHHhcCCCeEEEeccC------------CCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           86 -------IKLLQKAMEESGNDKFLIDGFP------------RNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        86 -------~~~~~~~l~~~~~~~~iidg~~------------~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                             ...+..++.  .+..||.|.|.            ...+....+...  ....||++|||++|++++.+|+.+|
T Consensus        76 A~R~~~~~~~i~paL~--~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R  153 (213)
T 4tmk_A           76 AARVQLVETVIKPALA--NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARAR  153 (213)
T ss_dssp             HHHHHHHHHTHHHHHH--TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH--CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc
Confidence                   122333333  48889999642            112333333321  4678999999999999999999999


Q ss_pred             c-CCCCCCcHHHHHHHHH-HHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          145 N-QGREDDNVETIRKRFK-VFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       145 ~-~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      . ..+.+.....+.+++. .|.    .+.+   ....+++||++.++++|.
T Consensus       154 ~~~dr~E~~~~~f~~rv~~~y~----~la~---~~~~~~vIDa~~s~eeV~  197 (213)
T 4tmk_A          154 GELDRIEQESFDFFNRTRARYL----ELAA---QDKSIHTIDATQPLEAVM  197 (213)
T ss_dssp             SSCCTTTTSCHHHHHHHHHHHH----HHHH---TCTTEEEEETTSCHHHHH
T ss_pred             CCccchhhhHHHHHHHHHHHHH----HHHH---HCCcEEEECCCCCHHHHH
Confidence            1 1222221122333332 332    2222   225699999999998764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.71  E-value=8e-16  Score=106.95  Aligned_cols=153  Identities=19%  Similarity=0.269  Sum_probs=88.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (196)
                      ++|+|.|+|||||||+++.|++++++.+++.|++.+.. . +......+..   .+......+....+. .+.   ...+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~-~-g~~~~~~~~~---~~~~~~~~~~~~~~~-~l~---~~~~   73 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT-S-GMTVADVVAA---EGWPGFRRRESEALQ-AVA---TPNR   73 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH-H-CSCHHHHHHH---HHHHHHHHHHHHHHH-HHC---CSSE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH-h-CCCHHHHHHH---cCHHHHHHHHHHHHH-Hhh---cCCe
Confidence            57999999999999999999999999999999887765 2 2222221110   000000111111222 222   3345


Q ss_pred             EEe-c--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHh--hccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252          102 LID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL--NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (196)
Q Consensus       102 iid-g--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~--~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (196)
                      |++ |  ..........+..     ++.+|||++|++++.+|+.  .|...++....+...+++..+.....   ..|..
T Consensus        74 vi~~g~~~~~~~~~~~~l~~-----~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~  145 (173)
T 1e6c_A           74 VVATGGGMVLLEQNRQFMRA-----HGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLRERE---ALYQD  145 (173)
T ss_dssp             EEECCTTGGGSHHHHHHHHH-----HSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHH---HHHHH
T ss_pred             EEECCCcEEeCHHHHHHHHc-----CCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHH---HHHHh
Confidence            554 4  2233333444433     4689999999999999998  66223343333344444544443222   23433


Q ss_pred             cCcEEEEeCC-CCceeEE
Q 029252          177 KGKVRKVIFC-SPIFILV  193 (196)
Q Consensus       177 ~~~~~~id~~-~~~e~v~  193 (196)
                        ..++||++ .++++++
T Consensus       146 --~~~~Id~~~~~~~~~~  161 (173)
T 1e6c_A          146 --VAHYVVDATQPPAAIV  161 (173)
T ss_dssp             --HCSEEEETTSCHHHHH
T ss_pred             --CcEEEECCCCCHHHHH
Confidence              24578887 6777653

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.71  E-value=8.5e-18  Score=118.77  Aligned_cols=158  Identities=17%  Similarity=0.235  Sum_probs=90.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCC---cchHHHHHHHHcCCCCCH---HHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGS---ENGTMIQNMIKEGKIVPS---EVTIKLL   89 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~   89 (196)
                      +++|+|.|+|||||||+++.|+++++     +.+++.+++++.......   .... +      .. ...   ......+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~-~------~~-~~~~~~~~~~~~~   74 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQ-M------RK-MDPETQKRIQKMA   74 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGG-G------SS-CCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHH-H------hc-CCHHHHHHHHHHH
Confidence            57899999999999999999999998     899999998887643321   1110 0      00 111   1111122


Q ss_pred             HHHHHh-cCCCeEEEeccCCCH--HHH------HHHHhhcCCCCcEEEEEEcCHHHHHH-HHhh--ccCCCCCCcHHHHH
Q 029252           90 QKAMEE-SGNDKFLIDGFPRNE--ENR------AAFEAVTKIEPEFVLFFDCSEEEMER-RILN--RNQGREDDNVETIR  157 (196)
Q Consensus        90 ~~~l~~-~~~~~~iidg~~~~~--~~~------~~~~~~~~~~~~~~i~l~~~~~~~~~-R~~~--R~~~r~~~~~~~~~  157 (196)
                      ...+.. ..+..+|+|+++...  ...      ..+.. .  .++++|||++|++++.+ |+..  |  +++....+.+.
T Consensus        75 ~~~i~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~l~~~~~~~~~rRl~~~~R--~r~~~~~~~~~  149 (192)
T 1kht_A           75 GRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNE-L--NPDLIIVVETTGDEILMRRMSDETR--VRDLDTASTIE  149 (192)
T ss_dssp             HHHHHHHHTTSCEEEECCSEEEETTEEEESSCHHHHHH-H--CCSEEEEEECCHHHHHHHHHTSSSC--SSSCCCHHHHH
T ss_pred             HHHHHhhccCCeEEEccceeccccccccccCcHHHHhc-c--CCCEEEEEeCCHHHHHHHHhhhccc--CCCcCCHHHHH
Confidence            222211 135679999865311  000      12222 1  36789999999999996 8887  6  56555555544


Q ss_pred             HHHHHHHhcchhHHHHHHhcCcEEEE-eCCCCceeEE
Q 029252          158 KRFKVFLESSLPVVQYYEAKGKVRKV-IFCSPIFILV  193 (196)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~i-d~~~~~e~v~  193 (196)
                      .+... ..........|.. ..++.+ |.+.++++++
T Consensus       150 ~~~~~-~~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~  184 (192)
T 1kht_A          150 QHQFM-NRCAAMSYGVLTG-ATVKIVQNRNGLLDQAV  184 (192)
T ss_dssp             HHHHH-HHHHHHHHHHHHC-CEEEEEECCTTCHHHHH
T ss_pred             HHHHH-HHHHHHHHHHhcC-CcEEEEeCCCCCHHHHH
Confidence            33322 2222222333332 345555 4444576654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.70  E-value=2.8e-16  Score=110.47  Aligned_cols=156  Identities=13%  Similarity=0.141  Sum_probs=89.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  100 (196)
                      +..|+|.|+|||||||+++.|++++++.+++.|++......  ......+...   +...........+.....  ....
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g--~~~~~~~~~~---g~~~~~~~~~~~~~~~~~--~~~~   77 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG--ADIAWIFEME---GEAGFRRREREMIEALCK--LDNI   77 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT--SCHHHHHHHH---HHHHHHHHHHHHHHHHHH--SSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CChhhHHHHh---CHHHHHHHHHHHHHHHHh--cCCc
Confidence            56899999999999999999999999999999998776532  2222211111   111111222333333322  2344


Q ss_pred             EEEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHH--hhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252          101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI--LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (196)
Q Consensus       101 ~iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~--~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (196)
                      +|..|  ..........+..     ...+|||++|++++.+|+  ..+ ..|+........+++........+   .|..
T Consensus        78 vi~~gg~~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~~-~~rp~~~~~~~~~~l~~~~~~r~~---~y~~  148 (185)
T 3trf_A           78 ILATGGGVVLDEKNRQQISE-----TGVVIYLTASIDTQLKRIGQKGE-MRRPLFIKNNSKEKLQQLNEIRKP---LYQA  148 (185)
T ss_dssp             EEECCTTGGGSHHHHHHHHH-----HEEEEEEECCHHHHHHHHHCCTT-CSSCCCCCHHHHHHHHHHHHHHHH---HHHH
T ss_pred             EEecCCceecCHHHHHHHHh-----CCcEEEEECCHHHHHHHHhhcCC-CCCCCCCCCCHHHHHHHHHHHHHH---HHhh
Confidence            44444  3344444555544     237999999999999999  443 234443333333444433332223   3433


Q ss_pred             cCcEEEEeCCC-CceeEE
Q 029252          177 KGKVRKVIFCS-PIFILV  193 (196)
Q Consensus       177 ~~~~~~id~~~-~~e~v~  193 (196)
                      ... ++||++. ++++++
T Consensus       149 ~ad-~~Idt~~~~~~e~~  165 (185)
T 3trf_A          149 MAD-LVYPTDDLNPRQLA  165 (185)
T ss_dssp             HCS-EEEECTTCCHHHHH
T ss_pred             cCC-EEEECCCCCHHHHH
Confidence            233 4677765 666553

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.69  E-value=1.8e-16  Score=115.30  Aligned_cols=166  Identities=14%  Similarity=0.170  Sum_probs=91.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC---CCCCH--HH--H-----
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG---KIVPS--EV--T-----   85 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~--~-----   85 (196)
                      ..++.+|+|.|++||||||+++.|++.++...++...+++.  +.+++.++.+..++..+   .....  ..  +     
T Consensus        24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~  101 (236)
T 3lv8_A           24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARV  101 (236)
T ss_dssp             --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHH
Confidence            34578999999999999999999999884221210011111  23556677777766422   11221  11  1     


Q ss_pred             ---HHHHHHHHHhcCCCeEEEeccC------------CCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhcc-CC
Q 029252           86 ---IKLLQKAMEESGNDKFLIDGFP------------RNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN-QG  147 (196)
Q Consensus        86 ---~~~~~~~l~~~~~~~~iidg~~------------~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~-~~  147 (196)
                         ...+...+.  .+..||.|.|.            ...+....+...  ....||++|||++|++++.+|+.+|. ..
T Consensus       102 ~~~~~~I~paL~--~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~d  179 (236)
T 3lv8_A          102 QLVENVIKPALA--RGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELD  179 (236)
T ss_dssp             HHHHHTHHHHHH--TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCC
T ss_pred             HHHHHHHHHHHH--cCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcc
Confidence               122333333  47889999542            112222222221  45789999999999999999999881 12


Q ss_pred             CCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       148 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      +.+.....+.+++...+.   .+.+   ....+++||++.++++|.
T Consensus       180 r~E~~~~~~~~rv~~~y~---~la~---~~~~~~vIDa~~sieeV~  219 (236)
T 3lv8_A          180 RIEKMDISFFERARERYL---ELAN---SDDSVVMIDAAQSIEQVT  219 (236)
T ss_dssp             TTTTSCHHHHHHHHHHHH---HHHH---HCTTEEEEETTSCHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHH---HHHH---HCCCEEEEeCCCCHHHHH
Confidence            222211233333332221   2222   222399999999998764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.69  E-value=1.3e-15  Score=108.54  Aligned_cols=157  Identities=15%  Similarity=0.138  Sum_probs=90.7

Q ss_pred             hcccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHH-------HH
Q 029252           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE-------VT   85 (196)
Q Consensus        13 ~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~   85 (196)
                      ...+...++.+|+|.|++||||||+++.|+..+|..+++.+++......          .....+....+.       ..
T Consensus        21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~   90 (200)
T 4eun_A           21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENI----------ATMQRGIPLTDEDRWPWLRSL   90 (200)
T ss_dssp             -------CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHH----------HHHHTTCCCCHHHHHHHHHHH
T ss_pred             HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHH----------HHHhcCCCCCCcccccHHHHH
Confidence            3444555678999999999999999999999999999988775321100          000111111111       11


Q ss_pred             HHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029252           86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE  165 (196)
Q Consensus        86 ~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~  165 (196)
                      ...+...+.  .+..+|+|...........+.+  ......+|||++|++++.+|+.+|  +......+.+..++..+. 
T Consensus        91 ~~~~~~~~~--~g~~viid~~~~~~~~~~~l~~--~~~~~~vv~l~~~~e~l~~Rl~~R--~~~~~~~~~l~~~~~~~~-  163 (200)
T 4eun_A           91 AEWMDARAD--AGVSTIITCSALKRTYRDVLRE--GPPSVDFLHLDGPAEVIKGRMSKR--EGHFMPASLLQSQLATLE-  163 (200)
T ss_dssp             HHHHHHHHH--TTCCEEEEECCCCHHHHHHHTT--SSSCCEEEEEECCHHHHHHHHTTC--SCCSSCGGGHHHHHHHCC-
T ss_pred             HHHHHHHHh--cCCCEEEEchhhhHHHHHHHHH--hCCceEEEEEeCCHHHHHHHHHhc--ccCCCCHHHHHHHHHHhC-
Confidence            222222222  3567888875555555555544  223457999999999999999988  333233344444433322 


Q ss_pred             cchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          166 SSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       166 ~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                         +   .|... ..+.||++.++++++
T Consensus       164 ---~---~~~~~-~~~~Id~~~~~~e~~  184 (200)
T 4eun_A          164 ---A---LEPDE-SGIVLDLRQPPEQLI  184 (200)
T ss_dssp             ---C---CCTTS-CEEEEETTSCHHHHH
T ss_pred             ---C---CCCCC-CeEEEECCCCHHHHH
Confidence               1   12222 477899988887654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.69  E-value=9.6e-16  Score=109.60  Aligned_cols=152  Identities=16%  Similarity=0.134  Sum_probs=86.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCC-----CC--------------
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----VP--------------   81 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------------   81 (196)
                      +.+|+|.|++||||||+++.|++ +|..+++.|++.+.....+......+...+.....     ..              
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~   80 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED   80 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence            35799999999999999999987 89999999998876432222111111111111000     00              


Q ss_pred             ----H----HHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252           82 ----S----EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (196)
Q Consensus        82 ----~----~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~  153 (196)
                          .    ......+...+....+..+|+|+... .+. . +.    ..++.+|||++|++++.+|+..|    ...+.
T Consensus        81 ~~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l-~e~-~-~~----~~~d~vi~l~~~~e~~~~Rl~~R----~~~~~  149 (206)
T 1jjv_A           81 KLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLL-IEN-K-LT----ALCDRILVVDVSPQTQLARSAQR----DNNNF  149 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTT-TTT-T-CG----GGCSEEEEEECCHHHHHHHHC---------CH
T ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCEEEEEechh-hhc-C-cH----hhCCEEEEEECCHHHHHHHHHHc----CCCCH
Confidence                0    01111122223222355788887322 111 1 11    13678999999999999999988    23356


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCce
Q 029252          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIF  190 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e  190 (196)
                      +.+.+++...    .+..+.|.. .. ++||++.+++
T Consensus       150 e~~~~r~~~q----~~~~~~~~~-ad-~vIdn~~~~~  180 (206)
T 1jjv_A          150 EQIQRIMNSQ----VSQQERLKW-AD-DVINNDAELA  180 (206)
T ss_dssp             HHHHHHHHHS----CCHHHHHHH-CS-EEEECCSCHH
T ss_pred             HHHHHHHHhc----CChHHHHHh-CC-EEEECCCCcc
Confidence            6677766542    233444443 33 5788877777

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.69  E-value=1.5e-16  Score=111.87  Aligned_cols=155  Identities=17%  Similarity=0.200  Sum_probs=85.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  100 (196)
                      +++|+|.|+|||||||+++.|++++++.+++.|++.+...  +......+.   ..+...........+...+.  ....
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~--g~~~~~~~~---~~g~~~~~~~~~~~~~~~~~--~~~~   74 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRSIADIFA---TDGEQEFRRIEEDVVRAALA--DHDG   74 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSCHHHHHH---HHCHHHHHHHHHHHHHHHHH--HCCS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc--CCCHHHHHH---HhChHHHHHHHHHHHHHHHh--cCCe
Confidence            4579999999999999999999999999999999887763  221111111   11211112222233333332  1333


Q ss_pred             EEEeccC--CCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcC
Q 029252          101 FLIDGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG  178 (196)
Q Consensus       101 ~iidg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (196)
                      ++..|..  ........+   .   .+.+|||++|++++.+|+.+|. +++........+++..+....   .+.|....
T Consensus        75 vi~~g~~~v~~~~~~~~l---~---~~~vV~L~~~~e~~~~Rl~~r~-~r~~~~~~~~~~~i~~~~~~r---~~~~~~~~  144 (184)
T 2iyv_A           75 VLSLGGGAVTSPGVRAAL---A---GHTVVYLEISAAEGVRRTGGNT-VRPLLAGPDRAEKYRALMAKR---APLYRRVA  144 (184)
T ss_dssp             EEECCTTGGGSHHHHHHH---T---TSCEEEEECCHHHHHHHTTCCC-CCSSTTSCCHHHHHHHHHHHH---HHHHHHHC
T ss_pred             EEecCCcEEcCHHHHHHH---c---CCeEEEEeCCHHHHHHHHhCCC-CCCCccCCCHHHHHHHHHHHH---HHHHhccC
Confidence            4444422  222222221   1   4579999999999999998871 122111111122233332211   22343333


Q ss_pred             cEEEEeCC-CCceeEE
Q 029252          179 KVRKVIFC-SPIFILV  193 (196)
Q Consensus       179 ~~~~id~~-~~~e~v~  193 (196)
                       .++||++ .++++++
T Consensus       145 -~~~Idt~~~s~ee~~  159 (184)
T 2iyv_A          145 -TMRVDTNRRNPGAVV  159 (184)
T ss_dssp             -SEEEECSSSCHHHHH
T ss_pred             -CEEEECCCCCHHHHH
Confidence             3578887 6777653

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.68  E-value=2.4e-15  Score=106.76  Aligned_cols=155  Identities=17%  Similarity=0.232  Sum_probs=88.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHH----------HHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV----------TIKL   88 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~   88 (196)
                      ++|++.|+.||||||+++.|++.|   |..++....      +.+++.++.+..++......+...          ....
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~   74 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE   74 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999988   444432211      223344444444444333322211          1223


Q ss_pred             HHHHHHhcCCCeEEEeccCC------------CHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHH
Q 029252           89 LQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (196)
Q Consensus        89 ~~~~l~~~~~~~~iidg~~~------------~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~  154 (196)
                      +...+.  .+..||.|.|..            ..+....+...  ....||+++||++|++++.+|...|  .|.. ..+
T Consensus        75 I~~~L~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~--dr~e-~~e  149 (197)
T 3hjn_A           75 IKQYLS--EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL--NRFE-KRE  149 (197)
T ss_dssp             HHHHHT--TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-----CTTC-CHH
T ss_pred             HHHHHH--CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCc--Cccc-cHH
Confidence            333333  478889996431            12222222221  5678999999999999999997766  4432 233


Q ss_pred             HHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                       ..++....+   ..+.+.+  ...+++||+++++++|.
T Consensus       150 -f~~rv~~~y---~~la~~~--~~~~~~IDa~~~~eeV~  182 (197)
T 3hjn_A          150 -FLERVREGY---LVLAREH--PERIVVLDGKRSIEEIH  182 (197)
T ss_dssp             -HHHHHHHHH---HHHHHHC--TTTEEEEETTSCHHHHH
T ss_pred             -HHHHHHHHH---HHHHHhC--CCCEEEEcCCCCHHHHH
Confidence             333332222   1232222  23699999999998764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.68  E-value=5.2e-16  Score=107.43  Aligned_cols=148  Identities=16%  Similarity=0.227  Sum_probs=85.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCCe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-EGKIVPSEVTIKLLQKAMEESGNDK  100 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~  100 (196)
                      +.|+|+|+|||||||+++.|++++++.+++.|++.+...  +...    ...+. .+......+....+. .+.  ....
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~--g~~~----~~~~~~~~~~~~~~~~~~~l~-~l~--~~~~   71 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE--GLSI----PQIFEKKGEAYFRKLEFEVLK-DLS--EKEN   71 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCH----HHHHHHSCHHHHHHHHHHHHH-HHT--TSSS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc--CCCH----HHHHHHhChHHHHHHHHHHHH-HHh--ccCC
Confidence            469999999999999999999999999999999887653  2222    22221 111000111122222 222  1344


Q ss_pred             EEEe-c--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCC--CcHHHHHHHHHHHHhcchhHHHHHH
Q 029252          101 FLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED--DNVETIRKRFKVFLESSLPVVQYYE  175 (196)
Q Consensus       101 ~iid-g--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~  175 (196)
                      +|++ |  ..........+..     ++.+|||++|++++.+|+..|. .|+.  +..+.+..++...       .+.|.
T Consensus        72 ~Vi~~g~~~~~~~~~~~~l~~-----~~~~i~l~~~~e~~~~R~~~r~-~r~~~~~~~~~i~~~~~~~-------~~~~~  138 (168)
T 2pt5_A           72 VVISTGGGLGANEEALNFMKS-----RGTTVFIDIPFEVFLERCKDSK-ERPLLKRPLDEIKNLFEER-------RKIYS  138 (168)
T ss_dssp             EEEECCHHHHTCHHHHHHHHT-----TSEEEEEECCHHHHHHHCBCTT-CCBGGGSCGGGTHHHHHHH-------HHHHT
T ss_pred             eEEECCCCEeCCHHHHHHHHc-----CCEEEEEECCHHHHHHHHhCCC-CCCCCcchHHHHHHHHHHH-------HHHHH
Confidence            5554 3  2233333333332     6799999999999999998761 2222  1123333333211       22344


Q ss_pred             hcCcEEEEeCCCCceeEE
Q 029252          176 AKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       176 ~~~~~~~id~~~~~e~v~  193 (196)
                      . ..+++ +++.++++++
T Consensus       139 ~-~~~~i-~~~~~~~~~~  154 (168)
T 2pt5_A          139 K-ADIKV-KGEKPPEEVV  154 (168)
T ss_dssp             T-SSEEE-ECSSCHHHHH
T ss_pred             h-CCEEE-CCCCCHHHHH
Confidence            3 55666 7777877653

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.68  E-value=1.7e-15  Score=109.07  Aligned_cols=164  Identities=13%  Similarity=0.143  Sum_probs=81.2

Q ss_pred             hcccCCCCCcEEEEEcCCCCChHHHHHHHHHHhCC----cEec-HHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHH---
Q 029252           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THLS-AGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV---   84 (196)
Q Consensus        13 ~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~----~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   84 (196)
                      +..+...++.+|++.|++||||||+++.|++.++.    .++. .    +.  +.+++.++.+..++..........   
T Consensus        13 ~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~t----re--P~~t~~g~~ir~~l~~~~~~~~~~e~l   86 (223)
T 3ld9_A           13 EAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLT----RE--PGGTLLNESVRNLLFKAQGLDSLSELL   86 (223)
T ss_dssp             ------CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEE----ES--SCSSHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             cccccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEee----eC--CCCChHHHHHHHHHhCCCCCCHHHHHH
Confidence            33455567899999999999999999999998754    2221 1    00  223445555555554321122111   


Q ss_pred             H---------HHHHHHHHHhcCCCeEEEeccCC------------CHHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHh
Q 029252           85 T---------IKLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRIL  142 (196)
Q Consensus        85 ~---------~~~~~~~l~~~~~~~~iidg~~~------------~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~  142 (196)
                      +         ...+...+.  .+..||.|.|..            ..+....+... ....||++|||++|++++.+|+ 
T Consensus        87 lf~a~R~~~~~~~I~paL~--~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-  163 (223)
T 3ld9_A           87 FFIAMRREHFVKIIKPSLM--QKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-  163 (223)
T ss_dssp             HHHHHHHHHHHHTHHHHHH--TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC---------
T ss_pred             HHHHHHHHHHHHHHHHHHh--cCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-
Confidence            0         111233333  478889996431            12222233221 1168999999999999999999 


Q ss_pred             hccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       143 ~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      .|  +|.+.......+++...+   ..+.+.|  ...+++||++.+++++
T Consensus       164 ~r--dr~E~~~~e~~~rv~~~y---~~la~~~--~~~~~vIDa~~sieeV  206 (223)
T 3ld9_A          164 CK--NGYEFADMEFYYRVRDGF---YDIAKKN--PHRCHVITDKSETYDI  206 (223)
T ss_dssp             ----------CHHHHHHHHHHH---HHHHHHC--TTTEEEEESSCSSSCC
T ss_pred             cc--CccccchHHHHHHHHHHH---HHHHHHC--CCCEEEEcCCCCHHHH
Confidence            55  443221123333332222   2333333  2469999999999987

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.68  E-value=2e-17  Score=118.81  Aligned_cols=160  Identities=13%  Similarity=0.090  Sum_probs=90.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHH-----------H
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK-----------L   88 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~   88 (196)
                      ++++|+|+|+|||||||+++.|+++++..+++.+ .++.. ..+.+.+..+..++..+..++......           .
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNE   86 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999875544441 11111 012233333444443333333221111           1


Q ss_pred             HHHHHHhcCCCeEEEeccCCCH---HH------HHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHH
Q 029252           89 LQKAMEESGNDKFLIDGFPRNE---EN------RAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR  157 (196)
Q Consensus        89 ~~~~l~~~~~~~~iidg~~~~~---~~------~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~  157 (196)
                      +...+.  .+..+|+|+++...   ..      ...+..+  ....++.+|||++|++++.+|+..| ..+.+ . +.+.
T Consensus        87 i~~~l~--~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r-~~r~~-~-~~~~  161 (212)
T 2wwf_A           87 IKSLLL--KGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG-EEIYE-K-VETQ  161 (212)
T ss_dssp             HHHHHH--HTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT-SSTTC-S-HHHH
T ss_pred             HHHHHh--CCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC-ccccc-H-HHHH
Confidence            222222  36789999876321   11      1122111  2246899999999999999998755 12222 2 3455


Q ss_pred             HHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          158 KRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      +++...+.....       ....++||++.++++++
T Consensus       162 ~~~~~~~~~~~~-------~~~~~~Id~~~~~~~~~  190 (212)
T 2wwf_A          162 KKIYETYKHFAH-------EDYWINIDATRKIEDIH  190 (212)
T ss_dssp             HHHHHHGGGGTT-------CTTEEEEECSSCHHHHH
T ss_pred             HHHHHHHHHHhc-------cCCEEEEECCCCHHHHH
Confidence            555333221111       34588999998887654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.68  E-value=4.1e-15  Score=103.60  Aligned_cols=153  Identities=14%  Similarity=0.140  Sum_probs=88.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH----HHcCCcchH-HHHHHHHcCCCCCHHHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKAM   93 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l   93 (196)
                      ..+.+|+|.|+|||||||+++.|+..++..+++.|++....    ...+..... .....+        ......+...+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~   77 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL--------QALNDAAFAMQ   77 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHH--------HHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHH--------HHHHHHHHHHH
Confidence            34578999999999999999999999999999987764210    011111110 000000        01112222222


Q ss_pred             HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCc-EEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHH
Q 029252           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ  172 (196)
Q Consensus        94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~-~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~  172 (196)
                      .  .+..+|+|...........+.+ .  .++ .+|||++|++++.+|+..|  ++.......+..++..+.    +.  
T Consensus        78 ~--~~~~~vi~~~~~~~~~~~~l~~-~--~~~~~vv~l~~~~e~~~~R~~~R--~~~~~~~~~~~~~~~~~~----~~--  144 (175)
T 1knq_A           78 R--TNKVSLIVCSALKKHYRDLLRE-G--NPNLSFIYLKGDFDVIESRLKAR--KGHFFKTQMLVTQFETLQ----EP--  144 (175)
T ss_dssp             H--HCSEEEEECCCCSHHHHHHHHT-T--CTTEEEEEEECCHHHHHHHHHTS--TTCCCCHHHHHHHHHHCC----CC--
T ss_pred             h--cCCcEEEEeCchHHHHHHHHHh-c--CCCEEEEEEECCHHHHHHHHHhc--cCCCCchHHHHHHHHhhh----Cc--
Confidence            2  2567888854334444444443 2  234 6999999999999999988  322223344444332221    11  


Q ss_pred             HHHhcCcEEEEeCCCCceeEE
Q 029252          173 YYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       173 ~~~~~~~~~~id~~~~~e~v~  193 (196)
                      .|.. ...+.||++.++++++
T Consensus       145 ~~~~-~~~~~Id~~~~~~~~~  164 (175)
T 1knq_A          145 GADE-TDVLVVDIDQPLEGVV  164 (175)
T ss_dssp             CTTC-TTEEEEECSSCHHHHH
T ss_pred             ccCC-CCeEEEeCCCCHHHHH
Confidence            1222 2467899888877653

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.67  E-value=5.3e-16  Score=111.24  Aligned_cols=120  Identities=15%  Similarity=0.199  Sum_probs=66.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCc--Eec----HHHHHHHHHHcCC---cchHHHHHHHHcCCCCCHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLS----AGDLLRAEIKSGS---ENGTMIQNMIKEGKIVPSEVTIKLLQ   90 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~--~~~----~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (196)
                      ++++|+|.|+|||||||+++.|+++++..  ++.    .++.++..+..+.   .........+.....  .......+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~i~   80 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDF--SDRYERYIL   80 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHH--HHHHHHTHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHH--HHHHHHHHH
Confidence            36799999999999999999999999763  332    1223333222110   011000000000000  000011122


Q ss_pred             HHHHhcCCCeEEEeccCCCH-----------HHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHh-hc
Q 029252           91 KAMEESGNDKFLIDGFPRNE-----------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL-NR  144 (196)
Q Consensus        91 ~~l~~~~~~~~iidg~~~~~-----------~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~-~R  144 (196)
                      ..+.  .+..+|+|+++...           +....+.. ....++++|||++|++++.+|+. .|
T Consensus        81 ~~l~--~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vi~l~~~~e~~~~Rl~~~R  143 (213)
T 2plr_A           81 PMLK--SGFIVISDRYIYTAYARDSVRGVDIDWVKKLYS-FAIKPDITFYIRVSPDIALERIKKSK  143 (213)
T ss_dssp             HHHH--TTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTT-TSCCCSEEEEEECCHHHHHHHHHHTT
T ss_pred             HHHh--CCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccc
Confidence            2232  46789999876432           11222222 33458899999999999999998 77

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.67  E-value=6.1e-16  Score=114.55  Aligned_cols=151  Identities=17%  Similarity=0.208  Sum_probs=91.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH---hCCcEe--cHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH---FGYTHL--SAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~---~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   95 (196)
                      +++|+|+|+|||||||+++.|++.   .|+.++  +.|.+. .........+.   ..       ........+...+. 
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~-~~l~~~~~~~e---~~-------~~~~~~~~i~~~l~-   71 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR-ESFPVWKEKYE---EF-------IKKSTYRLIDSALK-   71 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH-TTSSSCCGGGH---HH-------HHHHHHHHHHHHHT-
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH-HHHhhhhHHHH---HH-------HHHHHHHHHHHHhh-
Confidence            578999999999999999999998   577666  765543 22111011010   00       01112334444443 


Q ss_pred             cCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHH
Q 029252           96 SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY  173 (196)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  173 (196)
                        ...+|+|+.+........+...  ....++.+|||++|++++.+|+..|  ++. .+.+.+......|..   +. ..
T Consensus        72 --~~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R--~~~-~~~~~l~~~~~~~e~---~~-~~  142 (260)
T 3a4m_A           72 --NYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER--GEK-IPNEVIKKMYEKFDE---PG-KK  142 (260)
T ss_dssp             --TSEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHT--TCS-SCHHHHHHHHHHCCC---TT-SS
T ss_pred             --CCEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhC--CCC-CCHHHHHHHHHHhcC---cc-cc
Confidence              3789999977666655555442  3455688999999999999999988  433 234455544333321   11 12


Q ss_pred             HHhcCcEEEEeCCC--CceeE
Q 029252          174 YEAKGKVRKVIFCS--PIFIL  192 (196)
Q Consensus       174 ~~~~~~~~~id~~~--~~e~v  192 (196)
                      |.-....+.||++.  +.+++
T Consensus       143 ~~~~~~~~~Id~~~~~~~~ei  163 (260)
T 3a4m_A          143 YKWDEPFLIIDTTKDIDFNEI  163 (260)
T ss_dssp             CGGGCCSEEEETTSCCCHHHH
T ss_pred             CCCCCCEEEEeCCCCCCHHHH
Confidence            22123467889886  45443

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.66  E-value=1.1e-15  Score=109.04  Aligned_cols=156  Identities=19%  Similarity=0.253  Sum_probs=86.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH-----------HH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------IK   87 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~   87 (196)
                      ++++|+|+|+|||||||+++.|++++ ++.+++.+...+     ....++.+..++..+........           ..
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~-----~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~   77 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQR-----STVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFAS   77 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCT-----TSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCC-----CCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999998 466665321100     12233344444433322222111           01


Q ss_pred             HHHHHHHhcCCCeEEEeccCCCH-----------HHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHH
Q 029252           88 LLQKAMEESGNDKFLIDGFPRNE-----------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETI  156 (196)
Q Consensus        88 ~~~~~l~~~~~~~~iidg~~~~~-----------~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~  156 (196)
                      .+...+.  .+..+|+|+++...           +....+.. ....|+.+|||++|++++.+   +|  +........+
T Consensus        78 ~i~~~l~--~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~-~~~~~d~vi~l~~~~e~~~~---~R--~~d~~e~~~~  149 (204)
T 2v54_A           78 FIQEQLE--QGITLIVDRYAFSGVAYAAAKGASMTLSKSYES-GLPKPDLVIFLESGSKEINR---NV--GEEIYEDVTF  149 (204)
T ss_dssp             HHHHHHH--TTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHT-TSBCCSEEEEECCCHHHHTT---CC--SSSTTCCSHH
T ss_pred             HHHHHHH--CCCEEEEECchhhHHHHHHccCCCHHHHHHHhc-CCCCCCEEEEEeCCHHHHHh---hc--CcccccHHHH
Confidence            1222333  46789999876421           22222222 33568999999999999987   45  2111111244


Q ss_pred             HHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          157 RKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      .+++...+.   ...+.  ....+++||++.++++++
T Consensus       150 ~~rl~~~y~---~~~~~--~~~~~~~Id~~~~~~~v~  181 (204)
T 2v54_A          150 QQKVLQEYK---KMIEE--GDIHWQIISSEFEEDVKK  181 (204)
T ss_dssp             HHHHHHHHH---HHHTT--CSSCEEEECTTSCHHHHH
T ss_pred             HHHHHHHHH---HHHHh--CCCcEEEEECCCCHHHHH
Confidence            455543221   11111  123688999998888764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.65  E-value=5e-15  Score=110.76  Aligned_cols=157  Identities=16%  Similarity=0.145  Sum_probs=92.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCHH---------
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE---------   83 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---------   83 (196)
                      ++.+.+|+|+|+|||||||+|+.|+ .+|+.+++.|++.+.....+......+...+...     ..+...         
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~  150 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN  150 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence            3456899999999999999999999 6899999999998776544332222221111100     000000         


Q ss_pred             ---------H----HHHHHHHHHH---hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCC
Q 029252           84 ---------V----TIKLLQKAME---ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQG  147 (196)
Q Consensus        84 ---------~----~~~~~~~~l~---~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~  147 (196)
                               +    +...+...+.   ......+|+||.......   +.    ..++.+|||++|++++.+|+.+|.  
T Consensus       151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~----~~~d~vI~l~a~~ev~~~Rl~~R~--  221 (281)
T 2f6r_A          151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAG---WQ----SMVHEVWTVVIPETEAVRRIVERD--  221 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTT---GG----GGCSEEEEEECCHHHHHHHHHHHH--
T ss_pred             HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccc---hH----HhCCEEEEEcCCHHHHHHHHHHcC--
Confidence                     0    0111111111   112467999986432111   11    236899999999999999999882  


Q ss_pred             CCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       148 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                        ..+.+.+..++...    .+...++ .... ++||++.+++++
T Consensus       222 --g~s~e~~~~ri~~q----~~~~~~~-~~AD-~vIdn~~s~eel  258 (281)
T 2f6r_A          222 --GLSEAAAQSRLQSQ----MSGQQLV-EQSN-VVLSTLWESHVT  258 (281)
T ss_dssp             --CCCHHHHHHHHHTS----CCHHHHH-HTCS-EEEECSSCHHHH
T ss_pred             --CCCHHHHHHHHHHc----CChHhhH-hhCC-EEEECCCCHHHH
Confidence              22455566655443    1222332 2334 467888777654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.65  E-value=5.6e-16  Score=111.35  Aligned_cols=162  Identities=15%  Similarity=0.196  Sum_probs=81.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHH-----------H
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI-----------K   87 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~   87 (196)
                      .++++|+|+|+|||||||+++.|+++++...++.+. ++.. ..+...+..+..++..+...+.....           .
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~   84 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL-LRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP   84 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-EESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE-eeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999987533332211 0000 00112223333333322222221111           1


Q ss_pred             HHHHHHHhcCCCeEEEeccC------------CCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHH
Q 029252           88 LLQKAMEESGNDKFLIDGFP------------RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET  155 (196)
Q Consensus        88 ~~~~~l~~~~~~~~iidg~~------------~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~  155 (196)
                      .+...+.  .+..+|+|.+.            ...+....+.. ....++.+|||++|++++.+|+..| ..+. +. ..
T Consensus        85 ~i~~~l~--~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~Rl~r~-~~~~-~~-~~  158 (215)
T 1nn5_A           85 LIKEKLS--QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV-GLPKPDLVLFLQLQLADAAKRGAFG-HERY-EN-GA  158 (215)
T ss_dssp             HHHHHHH--TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGT-TSBCCSEEEEEECCHHHHHHC------CTT-CS-HH
T ss_pred             HHHHHHH--CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHhccC-cccc-ch-HH
Confidence            2333333  36788899532            11222221222 2346899999999999999998643 1222 22 23


Q ss_pred             HHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          156 IRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      +.+++...+.   .....  ....+++||++.++++++
T Consensus       159 ~~~~~~~~~~---~~~~~--~~~~~~~Id~~~~~e~~~  191 (215)
T 1nn5_A          159 FQERALRCFH---QLMKD--TTLNWKMVDASKSIEAVH  191 (215)
T ss_dssp             HHHHHHHHHH---HHTTC--TTSCEEEEETTSCHHHHH
T ss_pred             HHHHHHHHHH---HHHHh--CCCCEEEEECCCCHHHHH
Confidence            3333322111   11000  123578999988887654

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.64  E-value=8.5e-16  Score=106.42  Aligned_cols=147  Identities=13%  Similarity=0.142  Sum_probs=81.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCCe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-EGKIVPSEVTIKLLQKAMEESGNDK  100 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~  100 (196)
                      ..|+|+|+|||||||+++.|++++++.+++.|++.+...  +...    ...+. .+...........+.....  ....
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~--g~~~----~~~~~~~g~~~~~~~~~~~l~~~~~--~~~~   79 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV--GLSV----REIFEELGEDNFRMFEKNLIDELKT--LKTP   79 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCH----HHHHHHTCHHHHHHHHHHHHHHHHT--CSSC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh--CCCH----HHHHHHhCHHHHHHHHHHHHHHHHh--cCCC
Confidence            579999999999999999999999999999999887753  2222    22221 1211111222233333222  2333


Q ss_pred             -EEEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHHhcchhHHHHHH
Q 029252          101 -FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-QGREDDN-VETIRKRFKVFLESSLPVVQYYE  175 (196)
Q Consensus       101 -~iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~-~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~  175 (196)
                       +|..|  ++.. ..   +     ..++.+|||++|++++.+|+..|. .+|+... .+.+...+...       .+.|.
T Consensus        80 ~Vi~~g~g~~~~-~~---l-----~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r-------~~~~~  143 (168)
T 1zuh_A           80 HVISTGGGIVMH-EN---L-----KGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKR-------QALYE  143 (168)
T ss_dssp             CEEECCGGGGGC-GG---G-----TTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHH-------HHHHH
T ss_pred             EEEECCCCEech-hH---H-----hcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH-------HHHHH
Confidence             33323  2222 11   1     236789999999999999998761 1233222 33333333221       12343


Q ss_pred             hcCcEEEEeCCCCceeEE
Q 029252          176 AKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       176 ~~~~~~~id~~~~~e~v~  193 (196)
                      ... .++||++.++++++
T Consensus       144 ~~a-~~~Id~~~~~e~~~  160 (168)
T 1zuh_A          144 KNA-SFIIDARGGLNNSL  160 (168)
T ss_dssp             HTC-SEEEEGGGCHHHHH
T ss_pred             HHC-CEEEECCCCHHHHH
Confidence            323 34678777777653

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.64  E-value=7e-15  Score=106.01  Aligned_cols=156  Identities=18%  Similarity=0.182  Sum_probs=89.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCHHH----------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEV----------   84 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----------   84 (196)
                      ++.+|+|+|++||||||+++.|++ +|..+++.|++.+.....+......+...+...     ..+....          
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~   81 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE   81 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence            457999999999999999999988 999999999988775433322222222222110     0111111          


Q ss_pred             --------HHHHHH----HHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCc
Q 029252           85 --------TIKLLQ----KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (196)
Q Consensus        85 --------~~~~~~----~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~  152 (196)
                              ....+.    ..+....+..+|+++ +...+..  +..    .++.+|||++|++++.+|+..|  +  ..+
T Consensus        82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~~l~~~~--~~~----~~d~vi~l~~~~e~~~~Rl~~R--~--~~~  150 (218)
T 1vht_A           82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVENS--LYK----KANRVLVVDVSPETQLKRTMQR--D--DVT  150 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTTT--GGG----GCSEEEEEECCHHHHHHHHHHH--H--TCC
T ss_pred             HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-eeeeccC--ccc----cCCEEEEEECCHHHHHHHHHHc--C--CCC
Confidence                    111111    112211234455554 3322221  211    3789999999999999999988  2  234


Q ss_pred             HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      .+.+.+++....    +...++. ... ++||++.++++++
T Consensus       151 ~~~~~~~~~~~~----~~~~~~~-~ad-~vId~~~~~~~~~  185 (218)
T 1vht_A          151 REHVEQILAAQA----TREARLA-VAD-DVIDNNGAPDAIA  185 (218)
T ss_dssp             HHHHHHHHHHSC----CHHHHHH-HCS-EEEECSSCTTSHH
T ss_pred             HHHHHHHHHhcC----ChHHHHH-hCC-EEEECCCCHHHHH
Confidence            555666554421    2222222 233 5788887777653

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.64  E-value=8.2e-15  Score=104.30  Aligned_cols=154  Identities=15%  Similarity=0.125  Sum_probs=98.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCHH-------------
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE-------------   83 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-------------   83 (196)
                      .-|.|+|.+||||||+++.|++ +|+++++.|.+.+..+..+.+.-..+...++..     ..+...             
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~   88 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR   88 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence            4699999999999999999987 999999999999888766655444444433221     112211             


Q ss_pred             -----HH----HHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHH
Q 029252           84 -----VT----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (196)
Q Consensus        84 -----~~----~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~  154 (196)
                           +.    ...+...+.+.....+|+|. |...+... +..    .+|.+|++++|+++..+|+.+|    ...+.+
T Consensus        89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~~-~~~----~~D~vi~V~ap~e~r~~Rl~~R----dg~s~e  158 (210)
T 4i1u_A           89 RRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESRN-WKA----RCDRVLVVDCPVDTQIARVMQR----NGFTRE  158 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCHH-HHH----HCSEEEEEECCHHHHHHHHHHH----HCCCHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccCC-ccc----cCCeEEEEECCHHHHHHHHHhc----CCCCHH
Confidence                 11    22233333333345577775 44433111 121    3789999999999999999998    345677


Q ss_pred             HHHHHHHHHHhcchhHHHHHHhcCcEEEEeCC-CCceeE
Q 029252          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKVIFC-SPIFIL  192 (196)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~e~v  192 (196)
                      .+..|+....    +..+++ ...+ ++|+++ .+++++
T Consensus       159 ea~~ri~~Q~----~~eek~-~~AD-~VIdN~~gsle~l  191 (210)
T 4i1u_A          159 QVEAIIARQA----TREARL-AAAD-DVIVNDAATPDAL  191 (210)
T ss_dssp             HHHHHHHHSC----CHHHHH-HTCS-EEEECSSCCHHHH
T ss_pred             HHHHHHHHcC----ChHHHH-HhCC-EEEECCCCCHHHH
Confidence            7777765432    333333 3334 467777 777653

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.62  E-value=1.9e-14  Score=102.85  Aligned_cols=156  Identities=17%  Similarity=0.162  Sum_probs=90.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH----cCCcc--hHHHHHHHH-----------------cCC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSEN--GTMIQNMIK-----------------EGK   78 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~----~~~~~--~~~~~~~~~-----------------~~~   78 (196)
                      ++|.|.|++||||||+++.|++.+++.+++.|++.+....    .+...  ...+.....                 .|.
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   82 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGE   82 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCe
Confidence            4899999999999999999999999999999998876532    12111  111222111                 111


Q ss_pred             CCCH-----------------HHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHH
Q 029252           79 IVPS-----------------EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI  141 (196)
Q Consensus        79 ~~~~-----------------~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~  141 (196)
                      .++.                 ..+...+........ ..+|+||.... .      . ....++++|||++|++++.+|+
T Consensus        83 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi~g~~~~-~------~-~~~~~d~~i~l~a~~e~~~~R~  153 (208)
T 3ake_A           83 DLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVAEGRDMG-T------A-VFPEAAHKFYLTASPEVRAWRR  153 (208)
T ss_dssp             ECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEEEESSCC-C------C-CCTTCSEEEEEECCHHHHHHHH
T ss_pred             eCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEEEcccee-E------E-EecCCcEEEEEECCHHHHHHHH
Confidence            1110                 111222222222223 67889986432 0      0 2234789999999999999999


Q ss_pred             hhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCC-CceeEE
Q 029252          142 LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCS-PIFILV  193 (196)
Q Consensus       142 ~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~e~v~  193 (196)
                      ..|  ..  .+.+.+.+++.........   .+....+.++||++. ++++++
T Consensus       154 ~~r--~~--~~~~~~~~~~~~R~~~~~~---~~~~~ad~~~Id~~~~~~ee~~  199 (208)
T 3ake_A          154 ARE--RP--QAYEEVLRDLLRRDERDKA---QSAPAPDALVLDTGGMTLDEVV  199 (208)
T ss_dssp             HHT--SS--SCHHHHHHHHHHHHHTC-----CCCCCTTCEEEETTTSCHHHHH
T ss_pred             Hhh--cc--cCHHHHHHHHHHHHHHHhh---cccCCCCEEEEECCCCCHHHHH
Confidence            888  22  3345555555432211100   002223457899885 877654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.62  E-value=1.6e-15  Score=105.81  Aligned_cols=148  Identities=16%  Similarity=0.169  Sum_probs=85.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  102 (196)
                      .|+|.|+|||||||+++.|++++++.+++.|++.+....  ......+.   ..+...........+.. +.  ....+|
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g--~~~~~~~~---~~g~~~~~~~~~~~~~~-l~--~~~~~v   77 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN--QKVSEIFE---QKRENFFREQEQKMADF-FS--SCEKAC   77 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT--SCHHHHHH---HHCHHHHHHHHHHHHHH-HT--TCCSEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC--CCHHHHHH---HcCHHHHHHHHHHHHHH-HH--ccCCEE
Confidence            699999999999999999999999999999998876521  11111111   11111111122222322 22  234455


Q ss_pred             Ee-ccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHHhcchhHHHHHHhcCc
Q 029252          103 ID-GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-QGREDDN-VETIRKRFKVFLESSLPVVQYYEAKGK  179 (196)
Q Consensus       103 id-g~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~-~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (196)
                      ++ |.....+ .. +..     .+.+|||++|++++.+|+..|. ..|+... .+.+...+..       ..+.|.... 
T Consensus        78 i~~g~~~~~~-~~-l~~-----~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~-------r~~~y~~~~-  142 (175)
T 1via_A           78 IATGGGFVNV-SN-LEK-----AGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNE-------RLSKYEQKA-  142 (175)
T ss_dssp             EECCTTGGGS-TT-GGG-----GCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHH-------HHHHHHHHC-
T ss_pred             EECCCCEehh-hH-Hhc-----CCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHH-------HHHHHHhcC-
Confidence            65 5332211 11 222     3589999999999999998772 2344332 3333332221       223343322 


Q ss_pred             EEEEeCC-CCceeEE
Q 029252          180 VRKVIFC-SPIFILV  193 (196)
Q Consensus       180 ~~~id~~-~~~e~v~  193 (196)
                      .+.||++ .++++++
T Consensus       143 ~~~Idt~~~~~eev~  157 (175)
T 1via_A          143 NFILNIENKNIDELL  157 (175)
T ss_dssp             SEEEECTTCCHHHHH
T ss_pred             CEEEECCCCCHHHHH
Confidence            4688888 6877654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.61  E-value=2.2e-15  Score=107.55  Aligned_cols=153  Identities=17%  Similarity=0.184  Sum_probs=87.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCC-----CCCHH-------------
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-----IVPSE-------------   83 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-------------   83 (196)
                      ++|+|.|++||||||+++.|++ +++.+++.|++.+.....+......+........     .....             
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   80 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL   80 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999999 9999999999887643322211111111111000     01110             


Q ss_pred             -----HHH----HHHHHHHHhcCC-CeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252           84 -----VTI----KLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (196)
Q Consensus        84 -----~~~----~~~~~~l~~~~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~  153 (196)
                           +..    ..+...+....+ ..+|+|+.......   +    ...++.+|||++|++++.+|+..|  +.   +.
T Consensus        81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~---~----~~~~~~~i~l~~~~e~~~~Rl~~R--~~---~~  148 (204)
T 2if2_A           81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKG---T----YKNYDKLIVVYAPYEVCKERAIKR--GM---SE  148 (204)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTT---C----GGGSSEEEEECCCHHHHHHHHHHT--CC---CH
T ss_pred             HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCC---c----hhhCCEEEEEECCHHHHHHHHHHc--CC---CH
Confidence                 001    111112221233 67889974322111   1    113678999999999999999988  42   34


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      +.+.+++....    +... |..... ++||++.++++++
T Consensus       149 ~~~~~~~~~~~----~~~~-~~~~ad-~vId~~~~~~~~~  182 (204)
T 2if2_A          149 EDFERRWKKQM----PIEE-KVKYAD-YVIDNSGSIEETY  182 (204)
T ss_dssp             HHHHHHHTTSC----CHHH-HGGGCS-EECCCSSCHHHHH
T ss_pred             HHHHHHHHhCC----ChhH-HHhcCC-EEEECCCCHHHHH
Confidence            45555543322    2222 333334 4788887777653

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.60  E-value=6.3e-15  Score=104.97  Aligned_cols=157  Identities=14%  Similarity=0.149  Sum_probs=81.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHH----HHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG----DLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      ++|+|.|+|||||||+++.|+++++..++.-.    .+++..+..    .........      .......+........
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~----~~~~~~~~~------~~~~~~r~~~~~~~~~   70 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKD----LKKTVFKMQ------IYMLTARSKQLKQAKN   70 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTC----HHHHHHHHH------HHHHHHHHHHHC----
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhC----ccccchhHH------HHHHHHHHHHHHHhhc
Confidence            46999999999999999999999997665310    111111000    000000000      0000111111111111


Q ss_pred             CCeEEEeccCCCHH---------------HHHH----HHhh--c-------CCCCcEEEEEEcCHHHHHHHHhhccCCCC
Q 029252           98 NDKFLIDGFPRNEE---------------NRAA----FEAV--T-------KIEPEFVLFFDCSEEEMERRILNRNQGRE  149 (196)
Q Consensus        98 ~~~~iidg~~~~~~---------------~~~~----~~~~--~-------~~~~~~~i~l~~~~~~~~~R~~~R~~~r~  149 (196)
                      ...+|+|++....-               ....    +...  .       ...++.+|||++|++++.+|+.+|  +++
T Consensus        71 ~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R--~r~  148 (205)
T 2jaq_A           71 LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKR--GRS  148 (205)
T ss_dssp             --CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHH--TCH
T ss_pred             cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHc--CCh
Confidence            33489998764311               0010    1111  1       256889999999999999999988  543


Q ss_pred             CCcH--HHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          150 DDNV--ETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       150 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      ....  ....+++...+   ....+.|......++||++.++++++
T Consensus       149 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~Id~~~~~~~v~  191 (205)
T 2jaq_A          149 EELLIGEEYWETLNKNY---EEFYKQNVYDFPFFVVDAELDVKTQI  191 (205)
T ss_dssp             HHHHSCHHHHHHHHHHH---HHHHHHHTTTSCEEEEETTSCHHHHH
T ss_pred             hhhcCcHHHHHHHHHHH---HHHHHHccccCcEEEEECCCCHHHHH
Confidence            2211  12333333333   23445554234588999998877654

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.60  E-value=1.1e-14  Score=104.37  Aligned_cols=161  Identities=11%  Similarity=0.168  Sum_probs=94.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCC-CCCH-HHH----------HH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-IVPS-EVT----------IK   87 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~----------~~   87 (196)
                      ++.+|++.|++||||||+++.|++.++.....    ++.. ..+++.++.+..++.... .... ...          ..
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~----~~ep-~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~   78 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKFP-ERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD   78 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE----EESS-CTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccceE----EEec-CCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999852211    1111 124556666777665433 1221 111          12


Q ss_pred             HHHHHHHhcCCCeEEEeccCCC-H----------HHHHHHHhh--cCCCCcEEEEE-EcCHHHHHHHHhhccCCCCCCcH
Q 029252           88 LLQKAMEESGNDKFLIDGFPRN-E----------ENRAAFEAV--TKIEPEFVLFF-DCSEEEMERRILNRNQGREDDNV  153 (196)
Q Consensus        88 ~~~~~l~~~~~~~~iidg~~~~-~----------~~~~~~~~~--~~~~~~~~i~l-~~~~~~~~~R~~~R~~~r~~~~~  153 (196)
                      .+..++.  .+..||.|.|..+ .          .....+..+  ....||++||| ++|++++.+|+..|  +...+. 
T Consensus        79 ~I~paL~--~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~--~dr~E~-  153 (216)
T 3tmk_A           79 KIKKDLL--EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFG--DERYET-  153 (216)
T ss_dssp             HHHHHHH--TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSS--CCTTCC-
T ss_pred             HHHHHHH--cCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccC--cccccH-
Confidence            3333343  4788899964211 1          112222222  45679999999 99999999997644  222333 


Q ss_pred             HHHHHHHHHHHhcchhHHHHH--HhcCcEEEEe-CCCCceeEE
Q 029252          154 ETIRKRFKVFLESSLPVVQYY--EAKGKVRKVI-FCSPIFILV  193 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~id-~~~~~e~v~  193 (196)
                      ....+++...+.   .+.+.+  .....+++|| ++.++++|.
T Consensus       154 ~~f~~rvr~~Y~---~la~~~~~~~~~~~~vID~a~~s~eeV~  193 (216)
T 3tmk_A          154 VKFQEKVKQTFM---KLLDKEIRKGDESITIVDVTNKGIQEVE  193 (216)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHHTTCCSEEEEECTTCCHHHHH
T ss_pred             HHHHHHHHHHHH---HHHHhccccCCCCEEEEeCCCCCHHHHH
Confidence            344444433322   222221  1235799999 899998764

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.59  E-value=2.8e-14  Score=103.37  Aligned_cols=40  Identities=30%  Similarity=0.577  Sum_probs=36.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI   60 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~   60 (196)
                      +.+|+|.|+|||||||+++.|++.+++.+++.|++++...
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~   44 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA   44 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhh
Confidence            4689999999999999999999999999999999998653

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.58  E-value=3.5e-14  Score=111.69  Aligned_cols=120  Identities=21%  Similarity=0.210  Sum_probs=83.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      .+.+.+|+|+|+|||||||+++.|++.+++.+++.|++-        .                .......+...+.  .
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l~--~  308 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAALR--Q  308 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHHH--T
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHHh--c
Confidence            346789999999999999999999999999999987741        0                1112334444444  4


Q ss_pred             CCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc-c--CCCCCCcHHHHHHHHHHH
Q 029252           98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-N--QGREDDNVETIRKRFKVF  163 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R-~--~~r~~~~~~~~~~~~~~~  163 (196)
                      +..+|+|+.......+..+.++  .......+|||++|.+++.+|+..| .  ......+.+.+......+
T Consensus       309 g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~  379 (416)
T 3zvl_A          309 GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQF  379 (416)
T ss_dssp             TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHC
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhc
Confidence            7789999988777666655443  2233446999999999999999999 2  222344555555544443

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.58  E-value=9.4e-15  Score=102.25  Aligned_cols=108  Identities=19%  Similarity=0.264  Sum_probs=70.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   99 (196)
                      ++.+|+|.|+|||||||+++.|+++++..+++.|++++.. ......+...     .............+...+..   .
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---g   80 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE-QLYDGYDEEY-----DCPILDEDRVVDELDNQMRE---G   80 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH-TCEEEEETTT-----TEEEECHHHHHHHHHHHHHH---C
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc-chhhhhhhhh-----cCccCChHHHHHHHHHHHhc---C
Confidence            4568999999999999999999999999999999988775 1111111000     00112233334445555542   3


Q ss_pred             eEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ++|++......     +   ....++.+|||++|++++.+|+.+|
T Consensus        81 ~~vv~~~~~~~-----~---~~~~~~~vi~L~~~~e~l~~R~~~r  117 (180)
T 3iij_A           81 GVIVDYHGCDF-----F---PERWFHIVFVLRTDTNVLYERLETR  117 (180)
T ss_dssp             CEEEECSCCTT-----S---CGGGCSEEEEEECCHHHHHHHHHHT
T ss_pred             CEEEEechhhh-----c---chhcCCEEEEEECCHHHHHHHHHHc
Confidence            56677533211     0   0112678999999999999999988

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.57  E-value=4e-14  Score=99.44  Aligned_cols=113  Identities=20%  Similarity=0.349  Sum_probs=72.8

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHH-hCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCC---CHHHHHHHHHH
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH-FGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV---PSEVTIKLLQK   91 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   91 (196)
                      +..++++.|+|+|+|||||||+++.|+++ +++.+++.|++.+.. .....++..+    .. ...   ..+.....+..
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~~~----~~-~~~~r~~~~~~~~~l~~   78 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDTEL----DT-HIIEEKDEDRLLDFMEP   78 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC----------C-CCCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHHHh----hh-cccCCCCHHHHHHHHHH
Confidence            34455678999999999999999999999 799999999998874 1111221111    10 112   22233444444


Q ss_pred             HHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        92 ~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+.  ...++++|.....     .+..   ..++.+|||++|++++.+|+.+|
T Consensus        79 ~~~--~~g~~vi~~~~~~-----~~~~---~~~~~vi~l~~~~e~~~~Rl~~R  121 (184)
T 1y63_A           79 IMV--SRGNHVVDYHSSE-----LFPE---RWFHMVVVLHTSTEVLFERLTKR  121 (184)
T ss_dssp             HHT--SSSEEEEECSCCT-----TSCG---GGCSEEEEEECCHHHHHHHHHHT
T ss_pred             HHh--ccCCEEEeCchHh-----hhhh---ccCCEEEEEECCHHHHHHHHHhC
Confidence            442  2456788864321     1111   12578999999999999999988

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.56  E-value=1.7e-13  Score=102.70  Aligned_cols=123  Identities=14%  Similarity=0.173  Sum_probs=73.3

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHh--CCcEecHHHHHHHHHHcCCcchHHHHHHHHcC----CCCCHHHHHHHH
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG----KIVPSEVTIKLL   89 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~   89 (196)
                      ....++.+|+|.|+|||||||+++.|++++  +..+++.|++ +.....   +...........    ......+....+
T Consensus        28 ~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~-R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v  103 (287)
T 1gvn_B           28 KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF-KQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAII  103 (287)
T ss_dssp             CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH-HTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh-HHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHH
Confidence            344567899999999999999999999998  6788887554 322111   100011100000    000011223344


Q ss_pred             HHHHHhcCCCeEEEeccCCCHHHHHHHHhh-cC-CCCcEEEEEEcCHHHH----HHHHhhc
Q 029252           90 QKAMEESGNDKFLIDGFPRNEENRAAFEAV-TK-IEPEFVLFFDCSEEEM----ERRILNR  144 (196)
Q Consensus        90 ~~~l~~~~~~~~iidg~~~~~~~~~~~~~~-~~-~~~~~~i~l~~~~~~~----~~R~~~R  144 (196)
                      ...+.  .+..+|+|+.+....+...+.+. .. .....++++.+|++++    .+|+..|
T Consensus       104 ~~~l~--~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R  162 (287)
T 1gvn_B          104 SRLSD--QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM  162 (287)
T ss_dssp             HHHHH--HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred             HHHHh--cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence            44444  37789999987776544333221 12 2223478999999999    8888777

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.56  E-value=2.6e-13  Score=95.01  Aligned_cols=149  Identities=12%  Similarity=0.102  Sum_probs=78.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe-cHH---HHHHHHHHcCCcchHHHHHHHHcCCCCCH-HHHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL-SAG---DLLRAEIKSGSENGTMIQNMIKEGKIVPS-EVTIKLLQKAME   94 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~-~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~   94 (196)
                      ++++|+|+|+|||||||+++.|+++++..++ +.+   +.++..+..+...       +.  ..... ......+...+.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i~~~~~~g~~~-------~~--~~~~~~~~~~~~i~~~l~   74 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGD-------PQ--EHPMWIPLMLDALQYASR   74 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHHHHHHTSTTCCSC-------GG--GSTTHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHHHHhCccccch-------hh--hhHHHHHHHHHHHHHHHH
Confidence            5679999999999999999999999998877 431   1222211100000       00  00011 223344444443


Q ss_pred             hcCCCeEEEeccCCCHHHHHH----HHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhH
Q 029252           95 ESGNDKFLIDGFPRNEENRAA----FEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV  170 (196)
Q Consensus        95 ~~~~~~~iidg~~~~~~~~~~----~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  170 (196)
                      . .+..+|+|+..........    +.. .+. ....|||++|++++.+|+..|. .++ ...+.+...+..    ..++
T Consensus        75 ~-~g~~vi~d~~~~~~~~~~~~~~~l~~-~~~-~~~~i~l~~~~e~~~~R~~~R~-~r~-~~~~~~~~~~~~----~~~~  145 (183)
T 2vli_A           75 E-AAGPLIVPVSISDTARHRRLMSGLKD-RGL-SVHHFTLIAPLNVVLERLRRDG-QPQ-VNVGTVEDRLNE----LRGE  145 (183)
T ss_dssp             H-CSSCEEEEECCCCHHHHHHHHHHHHH-TTC-CCEEEEEECCHHHHHHHHHTC------CCHHHHHHHHHH----HTSG
T ss_pred             h-CCCcEEEeeeccCHHHHHHHHHHHHh-cCC-ceEEEEEeCCHHHHHHHHHhcc-ccc-hhHHHHHHHHHh----hccc
Confidence            2 3667888976555433222    222 222 2357999999999999999881 122 223333332222    2222


Q ss_pred             HHHHHhcCcEEEEeCC-CCceeEE
Q 029252          171 VQYYEAKGKVRKVIFC-SPIFILV  193 (196)
Q Consensus       171 ~~~~~~~~~~~~id~~-~~~e~v~  193 (196)
                       . |   . . +||++ .++++++
T Consensus       146 -~-~---~-~-~Id~~~~~~~~~~  162 (183)
T 2vli_A          146 -Q-F---Q-T-HIDTAGLGTQQVA  162 (183)
T ss_dssp             -G-G---C-S-EEECTTCCHHHHH
T ss_pred             -c-c---c-e-EeeCCCCCHHHHH
Confidence             1 2   2 3 88887 7777653

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.55  E-value=2.9e-14  Score=104.61  Aligned_cols=113  Identities=19%  Similarity=0.264  Sum_probs=72.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  100 (196)
                      +..|+|.|+|||||||+++.|++.+++.+++.|++++... .+......+.   ..|...........+...... ....
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~-~g~~i~~i~~---~~ge~~fr~~e~~~l~~l~~~-~~~~  122 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM-KGTSVAEIFE---HFGESVFREKETEALKKLSLM-YHQV  122 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS-TTSCHHHHHH---HHCHHHHHHHHHHHHHHHHHH-CSSE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh-cCccHHHHHH---HhCcHHHHHHHHHHHHHHHhh-cCCc
Confidence            5689999999999999999999999999999999887753 1222222221   112222222323334443331 1345


Q ss_pred             EEEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       101 ~iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      +|.+|  .+........+.      .+.+|||++|++++.+|+..+
T Consensus       123 Via~GgG~v~~~~~~~~l~------~~~vV~L~a~~e~l~~Rl~~~  162 (250)
T 3nwj_A          123 VVSTGGGAVIRPINWKYMH------KGISIWLDVPLEALAHRIAAV  162 (250)
T ss_dssp             EEECCGGGGGSHHHHHHHT------TSEEEEEECCHHHHHHHHHC-
T ss_pred             EEecCCCeecCHHHHHHHh------CCcEEEEECCHHHHHHHHhhc
Confidence            55554  444444444332      268999999999999999863

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.55  E-value=3.9e-14  Score=100.79  Aligned_cols=153  Identities=19%  Similarity=0.175  Sum_probs=86.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHc---CCCCCHHHH----------
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE---GKIVPSEVT----------   85 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----------   85 (196)
                      +++.+|+|.|++||||||+++.|++. |+.+++.|++.+... .+..  ..+...+..   ...+....+          
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~   81 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPER   81 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHHH
Confidence            45688999999999999999999998 999999999887654 2111  111111100   001111111          


Q ss_pred             --------HHHH-HHHHH---hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252           86 --------IKLL-QKAME---ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (196)
Q Consensus        86 --------~~~~-~~~l~---~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~  153 (196)
                              ...+ ...+.   ...+..+|+|+. .....  .+    ...++.+|||++|++++.+|+..|  +  ..+.
T Consensus        82 ~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~-~l~~~--~~----~~~~d~~i~l~~~~e~~~~R~~~R--~--~~~~  150 (203)
T 1uf9_A           82 LKALEAVVHPEVRRLLMEELSRLEAPLVFLEIP-LLFEK--GW----EGRLHGTLLVAAPLEERVRRVMAR--S--GLSR  150 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECT-TTTTT--TC----GGGSSEEEEECCCHHHHHHHHHTT--T--CCTT
T ss_pred             HHHHHHHhChHHHHHHHHHhhhcCCCEEEEEec-ceecc--Cc----hhhCCEEEEEECCHHHHHHHHHHc--C--CCCH
Confidence                    1111 11111   122577888863 21111  01    123679999999999999999977  2  2233


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      +.+..++...   . +....+. ..+ ++||++.+++++
T Consensus       151 ~~~~~~i~~~---~-~~~~~~~-~ad-~vId~~~~~~~~  183 (203)
T 1uf9_A          151 EEVLARERAQ---M-PEEEKRK-RAT-WVLENTGSLEDL  183 (203)
T ss_dssp             HHHHHHHTTS---C-CHHHHHH-HCS-EEECCSSHHHHH
T ss_pred             HHHHHHHHHC---C-ChhHHHH-hCC-EEEECCCCHHHH
Confidence            4455554432   1 2222222 233 378887766654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.54  E-value=6.2e-15  Score=105.46  Aligned_cols=161  Identities=17%  Similarity=0.118  Sum_probs=91.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh--
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--   95 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--   95 (196)
                      .++.+|+|.|+|||||||+++.|++.+ ++.+++.|++++..... ......+... .....+........+...+..  
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~l~~~i~~~l~~~~   96 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEI-ETDKNGFLQY-DVLEALNMEKMMSAISCWMESAR   96 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGS-CBCTTSCBCC-SSGGGBCHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHh-hccccCCChh-HHHHHhHHHHHHHHHHHHHhCCC
Confidence            346789999999999999999999988 78899998876532100 0000000000 000001112222222222221  


Q ss_pred             -----------cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCc-HHHHH-HHHHH
Q 029252           96 -----------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN-VETIR-KRFKV  162 (196)
Q Consensus        96 -----------~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~-~~~~~-~~~~~  162 (196)
                                 .....+|+||......     .. ....++.++|+++|++++.+|+..|  ++..+. .+.+. ..+..
T Consensus        97 ~~~~~~~~~~~~~~~~vi~eg~~~~~~-----~~-~~~~~d~~i~l~~~~~~~~~R~~~R--~~~~e~~~~~~~~~~~~~  168 (207)
T 2qt1_A           97 HSVVSTDQESAEEIPILIIEGFLLFNY-----KP-LDTIWNRSYFLTIPYEECKRRRSTR--VYQPPDSPGYFDGHVWPM  168 (207)
T ss_dssp             TSSCCC-----CCCCEEEEECTTCTTC-----GG-GTTTCSEEEEEECCHHHHHHHHHHS--CCSSCCCTTHHHHTHHHH
T ss_pred             CCCcCCCeeecCCCCEEEEeehHHcCc-----HH-HHHhcCeeEEEECCHHHHHHHHHHc--CCCccchHHHHHHHHhHH
Confidence                       1256789999653311     11 2335789999999999999999888  332221 12232 22222


Q ss_pred             HHhcchhHHHHHHhc-CcEEEEeCCCCceeEE
Q 029252          163 FLESSLPVVQYYEAK-GKVRKVIFCSPIFILV  193 (196)
Q Consensus       163 ~~~~~~~~~~~~~~~-~~~~~id~~~~~e~v~  193 (196)
                      |.    ...+.+... ..++.||++.++++++
T Consensus       169 ~~----~~~~~~~~~~~~v~~Id~~~~~eev~  196 (207)
T 2qt1_A          169 YL----KYRQEMQDITWEVVYLDGTKSEEDLF  196 (207)
T ss_dssp             HH----HHHHHGGGCSSCCEEEETTSCHHHHH
T ss_pred             HH----HHHHHHHhcCCeEEEecCCCCHHHHH
Confidence            22    233444443 3677899999888764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.54  E-value=1.5e-14  Score=106.54  Aligned_cols=131  Identities=24%  Similarity=0.337  Sum_probs=77.0

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCc----------EecHHHHHHHHHHcCCcchHHHHHHHHcCCC-------
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT----------HLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-------   79 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~----------~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------   79 (196)
                      ...++.+|+|.|+|||||||+|+.|++.+++.          +++.|++++..      ....... ...+..       
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~------~~~~~~~-~~~g~~~f~~~~~   90 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL------TSEQKAK-ALKGQFNFDHPDA   90 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC------CHHHHHH-HHTTCSCTTSGGG
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc------Chhhhhh-hccCCCCCCCcch
Confidence            34466899999999999999999999999977          78898877521      0011110 111111       


Q ss_pred             CCHHHHHHHHHHHHH----------------------hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHH
Q 029252           80 VPSEVTIKLLQKAME----------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (196)
Q Consensus        80 ~~~~~~~~~~~~~l~----------------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~  137 (196)
                      .........+.....                      ......+|+||.+...+.  .+..    .++.+|||++|++++
T Consensus        91 ~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~----~~d~vi~l~~~~e~~  164 (252)
T 1uj2_A           91 FDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD----LFQMKLFVDTDADTR  164 (252)
T ss_dssp             BCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH----HCSEEEEEECCHHHH
T ss_pred             hhHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH----hcCeeEEEeCCHHHH
Confidence            111222334433321                      013567999996543111  1222    257899999999999


Q ss_pred             HHHHhhcc-CCCCCCcHHHHHHHHH
Q 029252          138 ERRILNRN-QGREDDNVETIRKRFK  161 (196)
Q Consensus       138 ~~R~~~R~-~~r~~~~~~~~~~~~~  161 (196)
                      .+|+..|. ..+ ..+.+.+.+++.
T Consensus       165 ~~R~~~R~~~~r-g~~~e~i~~~~~  188 (252)
T 1uj2_A          165 LSRRVLRDISER-GRDLEQILSQYI  188 (252)
T ss_dssp             HHHHHHHHHHHS-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHhhh-CCCHHHHHHHHH
Confidence            99999881 111 124455555543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.53  E-value=3.5e-14  Score=98.61  Aligned_cols=152  Identities=14%  Similarity=0.214  Sum_probs=79.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   99 (196)
                      ++.+|+|.|+|||||||+++.|+..++..+++.|++.+...  +......++. .  +..........++.. +.  ...
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~-~--g~~~~~~~~~~~l~~-l~--~~~   74 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDL-E--GEEGFRDREEKVINE-LT--EKQ   74 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHH-H--HHHHHHHHHHHHHHH-HH--TSS
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHH-H--hHHHHHHHHHHHHHH-HH--hCC
Confidence            34689999999999999999999999999999988876642  2222211110 0  000000111122332 22  133


Q ss_pred             eEEEe---ccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCC----CCc-HHHHHHHHHHHHhcchhHH
Q 029252          100 KFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRE----DDN-VETIRKRFKVFLESSLPVV  171 (196)
Q Consensus       100 ~~iid---g~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~----~~~-~~~~~~~~~~~~~~~~~~~  171 (196)
                      .+++.   +..........+..     ++.++|++++++++.+|+..|. +++    .+. .+.+...+....       
T Consensus        75 ~~v~~~~~~~~~~~~~~~~l~~-----~~~~i~l~~~~~~l~~R~~~r~-~r~~~~~~~~~~~~~~~~~~~r~-------  141 (173)
T 1kag_A           75 GIVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDK-KRPLLHVETPPREVLEALANERN-------  141 (173)
T ss_dssp             SEEEECCTTGGGSHHHHHHHHH-----HSEEEECCCCHHHHHSCC-------CCSSSSCCCHHHHHHHHHHHH-------
T ss_pred             CeEEECCCeEEecHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCC-CCCCCCCCCchHHHHHHHHHHHH-------
Confidence            45553   23333333343443     4579999999999999998871 121    222 444444332221       


Q ss_pred             HHHHhcCcEEEEeCC-CCceeEE
Q 029252          172 QYYEAKGKVRKVIFC-SPIFILV  193 (196)
Q Consensus       172 ~~~~~~~~~~~id~~-~~~e~v~  193 (196)
                      +.|.... .++||++ .++++++
T Consensus       142 ~~~~~~a-~~~id~~~~~~~~~~  163 (173)
T 1kag_A          142 PLYEEIA-DVTIRTDDQSAKVVA  163 (173)
T ss_dssp             HHHHHHC-SEEC-----CHHHHH
T ss_pred             HHHHhhC-CEEEECCCCCHHHHH
Confidence            2343333 3577776 6776653

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.51  E-value=4.4e-13  Score=93.41  Aligned_cols=120  Identities=13%  Similarity=0.180  Sum_probs=66.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHHHHHHcC--CcchHHHHHHHHcCCC-CCH---HHH---HHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSG--SENGTMIQNMIKEGKI-VPS---EVT---IKL   88 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~---~~~---~~~   88 (196)
                      ++.+|+|.|+|||||||+++.|+++++..++  +.|++........  ...+..+.   ..+.. ...   .+.   ...
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   78 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFD---ADGGVSIGPEFRALEGAWAEG   78 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEEC---TTSCEEECHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhcccc---CCCccccchhHHHHHHHHHHH
Confidence            4678999999999999999999999976544  5766544321100  00000000   00000 000   111   112


Q ss_pred             HHHHHHhcCCCeEEEeccCC-CHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           89 LQKAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        89 ~~~~l~~~~~~~~iidg~~~-~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      +...+.  .+..+|+|+... .......+.+.....+..+|||++|.+++.+|+..|
T Consensus        79 ~~~~~~--~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r  133 (178)
T 1qhx_A           79 VVAMAR--AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETAR  133 (178)
T ss_dssp             HHHHHH--TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHT
T ss_pred             HHHHHh--cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhh
Confidence            233232  366789998543 222222233212223346889999999999999988

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.50  E-value=2.7e-14  Score=105.88  Aligned_cols=69  Identities=14%  Similarity=0.195  Sum_probs=42.7

Q ss_pred             CCCcEEEEEEcCHHHHHHHHhhccCCCCC---CcH---HHHHHHHHHHHhc--chhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          122 IEPEFVLFFDCSEEEMERRILNRNQGRED---DNV---ETIRKRFKVFLES--SLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       122 ~~~~~~i~l~~~~~~~~~R~~~R~~~r~~---~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      ..|+++|||++|++++.+|+.+|  +|+.   ...   +.+..+++.+...  ..+.+..|.. ..+++||++.++++++
T Consensus       173 ~~pd~vi~L~~~~e~~~~Ri~~R--~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~  249 (263)
T 1p5z_B          173 LELDGIIYLQATPETCLHRIYLR--GRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKY  249 (263)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHH
T ss_pred             CCCCeEEEEECCHHHHHHHHHhc--CCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHH
Confidence            46899999999999999999988  4431   222   2223333333221  1122222233 4589999999888764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.49  E-value=1.1e-13  Score=98.80  Aligned_cols=158  Identities=17%  Similarity=0.150  Sum_probs=84.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHc---CCc----chHHHHHHHHcCCCCCH--------H
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPS--------E   83 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~--------~   83 (196)
                      ++.+|+|.|+|||||||+++.|++.++. ..++..+..|+....   +..    ....+......+.++..        .
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYG   90 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeec
Confidence            4578999999999999999999998842 222211111110000   000    00112222222222110        0


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCC-CcEEEEEE-cCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 029252           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIE-PEFVLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFK  161 (196)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~-~~~~i~l~-~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~  161 (196)
                      .....+...+.  .+..+|+|+.+   .....+.+ .... ...+|||+ +|++++.+|+..|  ++  ++.+.+.+|+.
T Consensus        91 ~~~~~i~~~l~--~g~~vi~d~~~---~~~~~l~~-~~~~~~~~~i~l~~~s~e~l~~Rl~~R--~~--~~~~~i~~rl~  160 (204)
T 2qor_A           91 TLKSEYDLAVG--EGKICLFEMNI---NGVKQLKE-SKHIQDGIYIFVKPPSIDILLGRLKNR--NT--EKPEEINKRMQ  160 (204)
T ss_dssp             EEHHHHHHHHH--TTCEEEEECCH---HHHHHHHH-CSSCSCCEEEEEECSCHHHHHHHHHTC--TT--SCHHHHHHHHH
T ss_pred             CCHHHHHHHHH--cCCeEEEEECH---HHHHHHHH-hcCCCCeEEEEEcCCCHHHHHHHHHHc--CC--CCHHHHHHHHH
Confidence            00233444454  48889999644   22333333 2221 23789998 9999999999988  43  35677888777


Q ss_pred             HHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          162 VFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      ..+....+.   |....+++++| + +++++
T Consensus       161 ~~~~~~~~~---~~~~~d~vi~n-~-~~e~~  186 (204)
T 2qor_A          161 ELTREMDEA---DKVGFNYFIVN-D-DLART  186 (204)
T ss_dssp             HHHHHHHHH---HHHTCSEEEEC-S-SHHHH
T ss_pred             HHHHHHHHh---hhccCcEEEEC-c-CHHHH
Confidence            665322211   34444555444 4 55544

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.48  E-value=7.9e-13  Score=97.34  Aligned_cols=40  Identities=33%  Similarity=0.589  Sum_probs=36.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~   59 (196)
                      ++.+|.|.|++||||||+++.|++++|+.+++.+.+++..
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~   65 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVL   65 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHh
Confidence            3478999999999999999999999999999999998664

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.48  E-value=1.1e-12  Score=93.30  Aligned_cols=159  Identities=13%  Similarity=0.159  Sum_probs=82.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcch-HHHHHHHHcCC-CC-------------CH---
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG-TMIQNMIKEGK-IV-------------PS---   82 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~-~~-------------~~---   82 (196)
                      .++|.|.|++||||||+++.|++++|+.+++ +++++..... .... ..+...-.... +.             ..   
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~-~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKD-GRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA   83 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHh-cCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence            4689999999999999999999999999999 7777653211 1010 11111100000 00             00   


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252           83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV  162 (196)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~  162 (196)
                      ......+.+ +......++|++|..  -.   .+.  ......+.|||++|++++.+|+.++. +   .+.+...+++..
T Consensus        84 ~~~~~~i~~-la~~~~~~~Vi~Gr~--g~---~vl--~~~~~~~~V~L~A~~e~r~~R~~~~~-~---~~~~~~~~~i~~  151 (201)
T 3fdi_A           84 IRQFNFIRK-KANEEKESFVIVGRC--AE---EIL--SDNPNMISAFILGDKDTKTKRVMERE-G---VDEKTALNMMKK  151 (201)
T ss_dssp             HHHHHHHHH-HHHTSCCCEEEESTT--HH---HHT--TTCTTEEEEEEEECHHHHHHHHHHHH-T---CCHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHhhcCCCEEEEECC--cc---hhc--CCCCCeEEEEEECCHHHHHHHHHHHh-C---CCHHHHHHHHHH
Confidence            111222222 220024457787642  11   111  11123579999999999999998771 2   233444444443


Q ss_pred             HHhcchhHHHHHH------hcCcEEEEeCC-CCceeEE
Q 029252          163 FLESSLPVVQYYE------AKGKVRKVIFC-SPIFILV  193 (196)
Q Consensus       163 ~~~~~~~~~~~~~------~~~~~~~id~~-~~~e~v~  193 (196)
                      ....-.+.+..|.      ....-++||++ .++++++
T Consensus       152 ~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv  189 (201)
T 3fdi_A          152 MDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTAT  189 (201)
T ss_dssp             HHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHH
Confidence            3333333333331      11123467765 4776654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.46  E-value=3.6e-13  Score=95.05  Aligned_cols=42  Identities=21%  Similarity=0.369  Sum_probs=38.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS   62 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~   62 (196)
                      ..+|+|+|++||||||+++.|++.+|+.+++.|++.++....
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~   53 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE   53 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence            478999999999999999999999999999999998887553

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.46  E-value=6.1e-14  Score=101.08  Aligned_cols=160  Identities=14%  Similarity=0.187  Sum_probs=89.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH----HHcCCcchHHHHHH-------H-----------HcC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGTMIQNM-------I-----------KEG   77 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~-------~-----------~~~   77 (196)
                      ++.+|+|.|++||||||+++.|++.+++.+++.|++++..    ...+.  ...+...       +           ..|
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g   79 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDN   79 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCC
Confidence            3578999999999999999999999999999999998863    22222  1111111       0           111


Q ss_pred             CCCCH----HHH-------------HHHHH---HHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHH
Q 029252           78 KIVPS----EVT-------------IKLLQ---KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (196)
Q Consensus        78 ~~~~~----~~~-------------~~~~~---~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~  137 (196)
                      ...+.    ...             ...+.   ..+.  .+.++|++|-...  .     . ....++++|||++|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~--~~~~~vi~g~~~~--~-----~-~~~~~~~vi~l~a~~e~~  149 (219)
T 2h92_A           80 EDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELA--AEKGIVMDGRDIG--T-----V-VLPDADLKVYMIASVEER  149 (219)
T ss_dssp             EECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHH--TTCCEEEEESSCC--C-----C-CCTTCSEEEEEECCHHHH
T ss_pred             ccchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhc--cCCcEEEEcCCcc--c-----e-ecCCCCEEEEEECCHHHH
Confidence            11100    010             11111   1122  3557889973210  0     0 122367899999999999


Q ss_pred             HHHHhhc--cCCCCCCcHHHHHHHHHHHH--hcchhHHHHHHhcCcEEEEeCCC-CceeEE
Q 029252          138 ERRILNR--NQGREDDNVETIRKRFKVFL--ESSLPVVQYYEAKGKVRKVIFCS-PIFILV  193 (196)
Q Consensus       138 ~~R~~~R--~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~id~~~-~~e~v~  193 (196)
                      .+|+..+  .++. ..+.+.+.+++....  +..+.+.+.|.. ...++||++. ++++++
T Consensus       150 ~~R~~~~~~~r~~-~~~~e~~~~~~~~r~~~d~~r~~~~~~~~-~d~~~Id~~~~~~ee~~  208 (219)
T 2h92_A          150 AERRYKDNQLRGI-ESNFEDLKRDIEARDQYDMNREISPLRKA-DDAVTLDTTGKSIEEVT  208 (219)
T ss_dssp             HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHCSSSCSCCC-TTCEEEECTTCCHHHHH
T ss_pred             HHHHHHHHHhcCc-ccCHHHHHHHHHHHHHhhhhhhccccccC-CCeEEEECCCCCHHHHH
Confidence            9997542  1233 234566666664321  111111122222 3346888874 777654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.45  E-value=8.9e-14  Score=99.76  Aligned_cols=113  Identities=14%  Similarity=0.163  Sum_probs=65.6

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHcCCcch-HHHHHHHHcCCCCCHHHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLL   89 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~------~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   89 (196)
                      ...++.+|+|.|+|||||||+++.|++.++      ..+++.|.+ +........+. ..-...+        ......+
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~-r~~l~~~~~~~~~~r~~~~--------~~~~~~~   91 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI-RFGLNKDLGFSEADRNENI--------RRIAEVA   91 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH-TTTTTTTCCSSHHHHHHHH--------HHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH-hhhhccccCCCHHHHHHHH--------HHHHHHH
Confidence            345678999999999999999999999886      667775443 32211111110 0000000        0011222


Q ss_pred             HHHHHhcCCCeEEEeccCCC-HHHHHHHHhh-c-------CCCCcEEEEEEcCHHHHHHHH
Q 029252           90 QKAMEESGNDKFLIDGFPRN-EENRAAFEAV-T-------KIEPEFVLFFDCSEEEMERRI  141 (196)
Q Consensus        90 ~~~l~~~~~~~~iidg~~~~-~~~~~~~~~~-~-------~~~~~~~i~l~~~~~~~~~R~  141 (196)
                      ...+.  .+..+|+| +... ......+..+ .       ...|+++|||++|++++.+|+
T Consensus        92 ~~~l~--~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~  149 (211)
T 1m7g_A           92 KLFAD--SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD  149 (211)
T ss_dssp             HHHHH--TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred             HHHHH--CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence            23333  36778888 4322 2333333332 1       125689999999999999995

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.44  E-value=1.9e-12  Score=94.41  Aligned_cols=165  Identities=21%  Similarity=0.250  Sum_probs=91.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH----cCCcc--hHHHHHHH------------------
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSEN--GTMIQNMI------------------   74 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~----~~~~~--~~~~~~~~------------------   74 (196)
                      .++.+|+|.|++||||||+++.|++.+|+.+++.|++.+....    .+.+.  ...+...+                  
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~   93 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVF   93 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEe
Confidence            4567899999999999999999999999999999999986432    23221  11111111                  


Q ss_pred             HcCCC----CCH-HHH------------HHHHHHHHHh-cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHH
Q 029252           75 KEGKI----VPS-EVT------------IKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE  136 (196)
Q Consensus        75 ~~~~~----~~~-~~~------------~~~~~~~l~~-~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~  136 (196)
                      ..|..    +.. .+.            ...+...... ..+.++|+||.....   ..+     ..++++|||++|+++
T Consensus        94 ~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~---~~l-----~~~d~vi~L~a~~e~  165 (236)
T 1q3t_A           94 VGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGT---VVL-----PQAELKIFLVASVDE  165 (236)
T ss_dssp             ETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSS---SSG-----GGCSEEEEEECCHHH
T ss_pred             ECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchh---hhc-----cCCCEEEEEECCHHH
Confidence            11211    111 111            1112111111 135678899865421   011     135789999999999


Q ss_pred             HHHHHhhc--cCCCCCCcHHHHHHHHHH--HHhcchhHHHHHHhcCcEEEEeCC-CCceeEE
Q 029252          137 MERRILNR--NQGREDDNVETIRKRFKV--FLESSLPVVQYYEAKGKVRKVIFC-SPIFILV  193 (196)
Q Consensus       137 ~~~R~~~R--~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~id~~-~~~e~v~  193 (196)
                      +.+|+..|  .+++ ..+.+.+.+++..  +......+.+.|.. ...++||++ .++++++
T Consensus       166 ~~~R~~~~~~~R~~-~~~~e~~~~~i~~R~~~~~~~~~~p~~~~-~d~~vId~~~~s~eev~  225 (236)
T 1q3t_A          166 RAERRYKENIAKGI-ETDLETLKKEIAARDYKDSHRETSPLKQA-EDAVYLDTTGLNIQEVV  225 (236)
T ss_dssp             HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHTTCSSSCCSCC-TTCEEEECSSCCHHHHH
T ss_pred             HHHHHHHHHHhcCC-CCCHHHHHHHHHHHhhhhhhccccccccc-CCEEEEcCCCCCHHHHH
Confidence            99998332  1133 2344555555532  11111111112222 234688888 4877654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.44  E-value=4e-13  Score=98.97  Aligned_cols=122  Identities=18%  Similarity=0.178  Sum_probs=70.5

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHc----CCcchHHHHHHHHcCCCCCHHHHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKS----GSENGTMIQNMIKEGKIVPSEVTIKLLQ   90 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (196)
                      ...++.+|+|.|+|||||||+++.|++.++  ..+++.|.+ +.....    ....+.........   ....+....+.
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~  103 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVT  103 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHH
Confidence            345678999999999999999999999986  456666543 321100    00011000111000   00111222333


Q ss_pred             HHHHhcCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           91 KAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        91 ~~l~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ..+.  .+..+|+|+++....+...+.+.  .......++++++|++++.+|..+|
T Consensus       104 ~~~~--~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R  157 (253)
T 2p5t_B          104 KLSS--LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR  157 (253)
T ss_dssp             HHHH--TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred             HHHh--cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence            3332  35689999988765543333221  2222334778899999999999988

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.43  E-value=3.7e-13  Score=97.80  Aligned_cols=69  Identities=13%  Similarity=0.123  Sum_probs=41.2

Q ss_pred             CCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH--HHHHHHHHHHHhcchhHHHHH--HhcCcEEEEeCCCCceeEEe
Q 029252          121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNV--ETIRKRFKVFLESSLPVVQYY--EAKGKVRKVIFCSPIFILVI  194 (196)
Q Consensus       121 ~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~~e~v~~  194 (196)
                      ...||++|||++|++++.+|+.+|  +|..+..  ....+++...+..+   ...|  .....+++||++.+++++..
T Consensus       144 ~~~pD~vi~Ld~~~e~~~~Ri~~R--~r~~e~~~~~~~~~rv~~~~~~~---~~~~~~~~~~~~~vId~~~~~eev~~  216 (230)
T 2vp4_A          144 HVQADLIIYLRTSPEVAYERIRQR--ARSEESCVPLKYLQELHELHEDW---LIHQRRPQSCKVLVLDADLNLENIGT  216 (230)
T ss_dssp             CCCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHH---HTSCCSSCCCEEEEEECCC-------
T ss_pred             cCCCCEEEEEeCCHHHHHHHHHHc--CCcccccCcHHHHHHHHHHHHHH---HHHhcccCCCCEEEEECCCCHHHHHH
Confidence            567999999999999999999988  5543321  13445554443321   1112  23446899999999998864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.41  E-value=8.3e-13  Score=92.50  Aligned_cols=133  Identities=18%  Similarity=0.323  Sum_probs=82.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHcCCc--------chHHHHHHHHcCCCCCHH--------HH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSE--------NGTMIQNMIKEGKIVPSE--------VT   85 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--------~~   85 (196)
                      .|+|+||||||||||++.|.+.+. ...++.....|.. +.++.        ..+.+..++..+.++.+.        ..
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p-R~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~   81 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP-RAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST   81 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC-CTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC-CCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence            489999999999999999998874 2334433333332 11111        125666677766665332        12


Q ss_pred             HHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029252           86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE  165 (196)
Q Consensus        86 ~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~  165 (196)
                      ...+...+.  .+..+|+|..+   +....+.......+..++.+..+.+++.+|+..|  +  .++.+.+.+|+.....
T Consensus        82 ~~~v~~~l~--~g~~vil~id~---~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~R--g--~e~~e~i~~Rl~~a~~  152 (186)
T 1ex7_A           82 VASVKQVSK--SGKTCILDIDM---QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGR--G--TETEESINKRLSAAQA  152 (186)
T ss_dssp             HHHHHHHHH--HTSEEEEECCH---HHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHH--C--CSCHHHHHHHHHHHHH
T ss_pred             cceeeehhh--CCCEEEecCCH---HHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhc--C--CCCHHHHHHHHHHHHH
Confidence            555666665  37888998533   3333343311223444555566789999999988  3  3567889999877653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.41  E-value=4e-12  Score=89.29  Aligned_cols=115  Identities=17%  Similarity=0.206  Sum_probs=66.2

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHH--HH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK--LL   89 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   89 (196)
                      ...++.+|+|.|+|||||||+++.|++.++     ..+++.|.+ +........+...-..          .....  .+
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~r~----------~~~~~~~~~   77 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA-RTTVSEGAGFTREERL----------RHLKRIAWI   77 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HTTTTTTCCCCHHHHH----------HHHHHHHHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH-HHHHhhccCCChhhHH----------HHHHHHHHH
Confidence            344678999999999999999999999885     245555443 3322111111100000          00111  11


Q ss_pred             HHHHHhcCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhh
Q 029252           90 QKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILN  143 (196)
Q Consensus        90 ~~~l~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~  143 (196)
                      ...+. ..+..+|+|+..........+..+  ....++.+|||++|++++.+|+..
T Consensus        78 ~~~~~-~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~  132 (186)
T 2yvu_A           78 ARLLA-RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPK  132 (186)
T ss_dssp             HHHHH-TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred             HHHHH-hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence            11122 236667778765443333333321  233578899999999999999753

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.38  E-value=3.3e-11  Score=86.87  Aligned_cols=41  Identities=20%  Similarity=0.306  Sum_probs=34.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK   61 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~   61 (196)
                      ++++|.|.|++||||||+++.|++++++.+++ .+++.....
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~   53 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASE   53 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHH
Confidence            35789999999999999999999999999999 566655433

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.37  E-value=1.9e-11  Score=88.53  Aligned_cols=40  Identities=28%  Similarity=0.418  Sum_probs=36.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~   59 (196)
                      ++.+|+|.|+|||||||+++.|++++++.+++.+.+++..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~   47 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA   47 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence            4679999999999999999999999999999999998774

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.37  E-value=3.1e-12  Score=103.10  Aligned_cols=151  Identities=17%  Similarity=0.291  Sum_probs=84.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCC-----cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHH---H
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL---Q   90 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~   90 (196)
                      .++.+|+|+|.|||||||+++.|++.+++     .+++.|++.+....... ....+......+......+....+   .
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~-~~~~f~~~~~~~~~~re~~~~~~l~~~~  111 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYS-SYNFFRPDNEEAMKVRKQCALAALRDVK  111 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCC-CGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCc-cccccCcccHHHHHHHHHHHHHHHHHHH
Confidence            45689999999999999999999998842     45788886655432211 110000000000000001111112   2


Q ss_pred             HHHHhcCCCeEEEeccCCCHHHHHHHHhh-cCCC-CcEEEEEEcC-HHHHHHHHhhccCCCCC----CcH---HHHHHHH
Q 029252           91 KAMEESGNDKFLIDGFPRNEENRAAFEAV-TKIE-PEFVLFFDCS-EEEMERRILNRNQGRED----DNV---ETIRKRF  160 (196)
Q Consensus        91 ~~l~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~-~~~~i~l~~~-~~~~~~R~~~R~~~r~~----~~~---~~~~~~~  160 (196)
                      ..+....+..+|+|+..........+.++ .... ..+++++.++ ++++.+|+..|...+++    +..   +.+.+|+
T Consensus       112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~~Ri  191 (520)
T 2axn_A          112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRI  191 (520)
T ss_dssp             HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHHHH
T ss_pred             HHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHHHHH
Confidence            22322357889999988888777665442 1112 2346666777 67777888666222221    222   3456677


Q ss_pred             HHHHhcchhH
Q 029252          161 KVFLESSLPV  170 (196)
Q Consensus       161 ~~~~~~~~~~  170 (196)
                      ..|...+.++
T Consensus       192 ~~y~~~Yepi  201 (520)
T 2axn_A          192 SCYEASYQPL  201 (520)
T ss_dssp             HHHHTTCCCC
T ss_pred             Hhhhhhhccc
Confidence            7777766665

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.32  E-value=3.4e-11  Score=85.54  Aligned_cols=113  Identities=17%  Similarity=0.140  Sum_probs=66.6

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh---CCc--EecHHHHHHHHHHcCCcch-HHHHHHHHcCCCCCHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GYT--HLSAGDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQK   91 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~---~~~--~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   91 (196)
                      ..++.+|+|.|+|||||||+++.|+..+   |..  +++.+++.... .....+. ......+.        . ...+..
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~-~~~~~~~~~~~~~~~~--------~-~~~~~~   91 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGL-NRDLSFKAEDRAENIR--------R-VGEVAK   91 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT-TTTCCSSHHHHHHHHH--------H-HHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHh-hcccCcChHHHHHHHH--------H-HHHHHH
Confidence            3457899999999999999999999988   544  77766543211 1111111 00000000        0 111122


Q ss_pred             HHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHH
Q 029252           92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI  141 (196)
Q Consensus        92 ~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~  141 (196)
                      .+. ..+..+|.............+.+.........|||++|.+++.+|+
T Consensus        92 ~~~-~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~  140 (200)
T 3uie_A           92 LFA-DAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD  140 (200)
T ss_dssp             HHH-HTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred             HHH-hCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence            222 1366677776555555666666522222345799999999999997

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.31  E-value=1.2e-11  Score=90.45  Aligned_cols=68  Identities=12%  Similarity=0.051  Sum_probs=41.8

Q ss_pred             CCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH--HHHHHHHHHHHhcc-----hhH-HHHHHhcCcEEEEeCCCCceeE
Q 029252          122 IEPEFVLFFDCSEEEMERRILNRNQGREDDNV--ETIRKRFKVFLESS-----LPV-VQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       122 ~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~--~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      ..|+.+|||++|++++.+|+.+|  ++..+..  ....+++...+..+     .++ ++.| ....+++||++.+++++
T Consensus       148 ~~pd~~i~l~~~~~~~~~R~~~R--~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~Id~~~~~~~v  223 (241)
T 2ocp_A          148 ITLHGFIYLQASPQVCLKRLYQR--AREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLVLDVNDDFSEE  223 (241)
T ss_dssp             HCCCEEEEEECCHHHHHHHHHHS--CCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEEEECCSCTTTC
T ss_pred             cCCCEEEEEECCHHHHHHHHHhc--CCcccccCCHHHHHHHHHHHHHHHhhcccccccccc-CCCCEEEEECCCChhhC
Confidence            36999999999999999999988  5543331  22223332222111     000 0112 34579999999987765

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.28  E-value=1.2e-10  Score=81.10  Aligned_cols=113  Identities=19%  Similarity=0.243  Sum_probs=60.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh---CCcEecHH-HHHHHHHHcCCcch-HHHHHHHHcCCCCCHHHHHHH--HHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAG-DLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKL--LQK   91 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~-d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~   91 (196)
                      .++.+|+|+|++||||||+++.|++.+   |+.++..+ +.++........+. ....           ..+...  ...
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~   71 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDRE-----------ENVRRIAEVAK   71 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHH-----------HHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHH-----------HHHHHHHHHHH
Confidence            346789999999999999999999988   76665332 33332111110000 0000           011111  111


Q ss_pred             HHHhcCCCeEEEeccCC-CHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           92 AMEESGNDKFLIDGFPR-NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        92 ~l~~~~~~~~iidg~~~-~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+.. .+. +++.++.. .......+..+  ....++.+|||++|++++.+|+..|
T Consensus        72 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~  125 (179)
T 2pez_A           72 LFAD-AGL-VCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG  125 (179)
T ss_dssp             HHHH-TTC-EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred             HHHH-CCC-EEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence            1222 343 44444332 22112222211  2335788999999999999997643

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=99.26  E-value=2e-12  Score=96.99  Aligned_cols=38  Identities=21%  Similarity=0.327  Sum_probs=30.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR   57 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~   57 (196)
                      ++.+|.|.|++||||||+++.|++.++     ..+++.|++.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            457899999999999999999999887     68888888764

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.25  E-value=7.3e-11  Score=96.42  Aligned_cols=115  Identities=15%  Similarity=0.180  Sum_probs=65.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh---CCcEecHH-HHHHHHHHcCCcchH-HHHHHHHcCCCCCHHHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAG-DLLRAEIKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKAM   93 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~-d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l   93 (196)
                      .++.+|+|+|+|||||||+++.|++++   +..++..| |.++........+.. .-...+.       . ....+...+
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r-------~-i~eva~~~l  121 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR-------R-IAEVAKLFA  121 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHH-------H-HHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHH-------H-HHHHHHHHH
Confidence            367899999999999999999999998   76665542 444432221111110 0011110       0 111222222


Q ss_pred             HhcCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhh
Q 029252           94 EESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILN  143 (196)
Q Consensus        94 ~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~  143 (196)
                      .  .+..+|.+...........+.++  ....++++|||++|++++.+|+.+
T Consensus       122 ~--~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r  171 (630)
T 1x6v_B          122 D--AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK  171 (630)
T ss_dssp             H--TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred             h--CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence            2  35666666322222222333322  334567899999999999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=99.23  E-value=2.8e-13  Score=97.14  Aligned_cols=67  Identities=21%  Similarity=0.159  Sum_probs=39.8

Q ss_pred             CCcEEEEEEcCHHHHHHHHhhccC---CCCCCc---HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          123 EPEFVLFFDCSEEEMERRILNRNQ---GREDDN---VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       123 ~~~~~i~l~~~~~~~~~R~~~R~~---~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      .++.+|||++|++++.+|+..|..   ++..+.   ...+.+++...+.   .+.+.+. ...+++||++.++++++
T Consensus       132 ~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~---~~~~~~~-~~~~~vId~~~~~~~v~  204 (214)
T 1gtv_A          132 KPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYA---ELAAQGW-GGRWLVVGADVDPGRLA  204 (214)
T ss_dssp             BCEEEEEEEEEHHHHHHHHHHHHHEBBEEEEEEEEEEHHHHHHHHHHHH---HHHHEEE-EEEEEEEEEEEBHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHcccccccccccccccccHHHHHHHHHHHH---HHHHhCC-CCCEEEEeCCCCHHHHH
Confidence            689999999999999999998811   111111   1344444432221   1211111 13578999998887654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.20  E-value=3.4e-11  Score=86.06  Aligned_cols=134  Identities=16%  Similarity=0.305  Sum_probs=68.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHc---CCc----chHHHHHHHHcCCCCCHH--------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE--------   83 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~--------   83 (196)
                      ++.+|+|.||+||||||+++.|++.++. .........+....+   +..    ....+...+..+.++...        
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg   86 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG   86 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence            4678999999999999999999988742 222111111100000   000    012222332222221110        


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEc-CHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKRFKV  162 (196)
Q Consensus        84 ~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~  162 (196)
                      .....+...+.  .+..+|+|...   .....+.. ....+ .+||+.. +.+++.+|+.+|  +.  ++.+.+.+|+..
T Consensus        87 ~~~~~i~~~l~--~g~~vild~~~---~g~~~~~~-~~~~~-~~i~i~~ps~~~l~~Rl~~R--~~--~~~e~i~~Rl~~  155 (208)
T 3tau_A           87 TPLEYVEEKLA--AGVDIFLEIEV---QGAMQVRK-AMPEG-IFIFLTPPDLSELKNRIIGR--GT--ESMEVVEERMET  155 (208)
T ss_dssp             EEHHHHHHHHH--TTCCEEEECCH---HHHHHHHH-HCTTS-EEEEEECTTTTTSSCC-----------CCHHHHHHHHH
T ss_pred             CcHHHHHHHHH--cCCeEEEEeeH---HHHHHHHH-hCCCe-EEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHHH
Confidence            01233455554  47788998633   33333443 34444 4555554 489999999988  32  455778888876


Q ss_pred             HH
Q 029252          163 FL  164 (196)
Q Consensus       163 ~~  164 (196)
                      ..
T Consensus       156 ~~  157 (208)
T 3tau_A          156 AK  157 (208)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=99.18  E-value=8.9e-11  Score=83.43  Aligned_cols=115  Identities=20%  Similarity=0.214  Sum_probs=53.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh---CC--cEecHHHHHHHHHH---cCCcchHHHHHHHHcCCCCCHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRAEIK---SGSENGTMIQNMIKEGKIVPSEVTIKLL   89 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~---~~--~~~~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (196)
                      ...+.+|+|.|++||||||+++.|+..+   +.  .+++.|.+......   .+...+.   .... + .+....+...+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~---~~~~-~-~~d~~~l~~~v   93 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWF---EYYY-L-QWDVEWLTHQL   93 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHH---HHHH-T-SSCHHHHHHHT
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCcc---CCCc-c-ccCHHHHHHHH
Confidence            4456899999999999999999999876   33  33444543322111   1111111   1111 1 11112211111


Q ss_pred             HHHH-----------------------HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           90 QKAM-----------------------EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        90 ~~~l-----------------------~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ...+                       ....+..+|+||.......   +    ...+|.+||+++|.+++.+|+..|
T Consensus        94 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~----~~~~d~~i~v~~~~~~~~~R~~~R  164 (201)
T 1rz3_A           94 FRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---W----RPFFDFVVYLDCPREIRFARENDQ  164 (201)
T ss_dssp             GGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---T----GGGCSEEEEECCC-----------
T ss_pred             HHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---H----HhhcCEEEEEeCCHHHHHHHHhcC
Confidence            0000                       0012567889986533211   1    123679999999999999999988

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.17  E-value=7.5e-12  Score=89.14  Aligned_cols=156  Identities=16%  Similarity=0.235  Sum_probs=58.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHc---CC----cchHHHHHHHHcCCCCCHH-------
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKS---GS----ENGTMIQNMIKEGKIVPSE-------   83 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~-~~~~~~~~d~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~-------   83 (196)
                      .++.+|+|.|++||||||+++.|+..+ ....+...+..+.....   +.    .....+......+..+...       
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY   83 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence            356799999999999999999999877 21111111111100000   00    0011222222222221100       


Q ss_pred             -HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEE-cCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 029252           84 -VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFK  161 (196)
Q Consensus        84 -~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~  161 (196)
                       .....+...+.  .+..+|+|+.+....   .+.. ....+ +++|+. ++.+++.+|+.+|  +  ..+.+.+.+++.
T Consensus        84 g~~~~~i~~~l~--~g~~vv~d~~~~~~~---~~~~-~~~~~-~~i~~~~~~~~~~~~Rl~~R--~--~~~~~~~~~rl~  152 (207)
T 2j41_A           84 GTPVQYVKDTMD--EGHDVFLEIEVEGAK---QVRK-KFPDA-LFIFLAPPSLEHLRERLVGR--G--TESDEKIQSRIN  152 (207)
T ss_dssp             EEEHHHHHHHHH--TTCEEEEECCGGGHH---HHHH-HCTTS-EEEEEECCC----------------------------
T ss_pred             CCCHHHHHHHHH--cCCeEEEEECHHHHH---HHHH-hcCCe-EEEEEECCCHHHHHHHHHhc--C--CCCHHHHHHHHH
Confidence             01233444444  367899997544322   2333 22122 344444 5688999999888  3  233456666666


Q ss_pred             HHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          162 VFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      .+....    .++ ...+++ |+++ +++++
T Consensus       153 ~~~~~~----~~~-~~~d~v-I~n~-~~e~~  176 (207)
T 2j41_A          153 EARKEV----EMM-NLYDYV-VVND-EVELA  176 (207)
T ss_dssp             ---CGG----GGG-GGCSEE-EECS-SHHHH
T ss_pred             HHHHHH----hcc-ccCCEE-EECC-CHHHH
Confidence            555332    122 233454 4444 56554

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.16  E-value=7.5e-11  Score=86.78  Aligned_cols=120  Identities=14%  Similarity=0.182  Sum_probs=66.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHH-HHH--cCCcchHHHHH---H-HHcC----CCCCHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-EIK--SGSENGTMIQN---M-IKEG----KIVPSEVTIKLLQ   90 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~-~~~--~~~~~~~~~~~---~-~~~~----~~~~~~~~~~~~~   90 (196)
                      .+|+|.|+|||||||+++.|+++++..+++.|++... ...  ...+.......   . +...    ..+....+.....
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   81 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI   81 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence            4789999999999999999999999999998875421 000  00110000000   0 0000    0122233333333


Q ss_pred             HHHHh-cCCCeEEEeccCCCHHHHHHHHhhcC---CCC-cEEEEEEcCH-HHHHHHHhhc
Q 029252           91 KAMEE-SGNDKFLIDGFPRNEENRAAFEAVTK---IEP-EFVLFFDCSE-EEMERRILNR  144 (196)
Q Consensus        91 ~~l~~-~~~~~~iidg~~~~~~~~~~~~~~~~---~~~-~~~i~l~~~~-~~~~~R~~~R  144 (196)
                      ..+.. ..+..+|+++...  .....+.. ..   ... ..++||++|. +++.+|+.+|
T Consensus        82 ~~i~~~~~g~~vIl~gg~~--~~~~~~~~-~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R  138 (253)
T 2ze6_A           82 FEVDWRKSEEGLILEGGSI--SLLNCMAK-SPFWRSGFQWHVKRLRLGDSDAFLTRAKQR  138 (253)
T ss_dssp             HHHHTTTTSSEEEEEECCH--HHHHHHHH-CTTTTSSCEEEEEECCCCCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeEEeccHH--HHHHHHHh-cccccccCceEEEEecchhHHHHHHHHHHH
Confidence            33311 1366677775321  22222222 20   122 2589999997 9999999999

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.16  E-value=1.4e-09  Score=77.25  Aligned_cols=135  Identities=16%  Similarity=0.244  Sum_probs=68.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH---cCC----cchHHHHHHHHcCCCCCH--------HH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK---SGS----ENGTMIQNMIKEGKIVPS--------EV   84 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~--------~~   84 (196)
                      ++.+++|.||+||||||+++.|+..+....+...+..+....   .+.    .....+......+.....        ..
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT   85 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence            357899999999999999999998764222222111110000   000    000111221111111000        00


Q ss_pred             HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029252           85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL  164 (196)
Q Consensus        85 ~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~  164 (196)
                      ....+...+.  .+..+++|+.+.   ....+.. ....+..+++...+++++.+|+.+|  ++  ++.+.+.+|+....
T Consensus        86 ~~~~i~~~l~--~g~~vi~d~~~~---~~~~~~~-~~~~~~~v~~~~~~~e~l~~Rl~~R--~~--~~~~~i~~rl~~~~  155 (205)
T 3tr0_A           86 EKDWVLRQLK--AGRDVLLEIDWQ---GARQIRE-LFPPALSIFILPPSIEALRERLIKR--RQ--DDTAIIEQRLALAR  155 (205)
T ss_dssp             EHHHHHHHHH--TTCEEEEECCHH---HHHHHHH-HCTTCEEEEEECSCHHHHHHHHHTC--TT--SCSSTHHHHHHHHH
T ss_pred             hHHHHHHHHH--cCCeEEEEECHH---HHHHHHH-hCCCcEEEEEECcCHHHHHHHHHHh--CC--CCHHHHHHHHHHHH
Confidence            0123444444  367788886432   2233333 3444544444555799999999988  33  33445666766654

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=99.14  E-value=2.5e-10  Score=91.16  Aligned_cols=148  Identities=16%  Similarity=0.261  Sum_probs=81.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCC---CCHHHHHH--
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI---VPSEVTIK--   87 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--   87 (196)
                      ..++.+|+|.|.|||||||+++.|++.++     ...++.+++........... ..+.   ..+..   ....+...  
T Consensus        36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~-~ifd---~~g~~~~r~re~~~~~~l  111 (469)
T 1bif_A           36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSF-EFFL---PDNEEGLKIRKQCALAAL  111 (469)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCG-GGGC---TTCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcc-cccC---CCCHHHHHHHHHHHHHHH
Confidence            34678999999999999999999999874     45667766554432111110 0000   00000   00011111  


Q ss_pred             -HHHHHHHhcCCCeEEEeccCCCHHHHHHHHhh-cCCCCcEEEEEE---cCHHHHHHHHhhccCCCCC---CcH----HH
Q 029252           88 -LLQKAMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFD---CSEEEMERRILNRNQGRED---DNV----ET  155 (196)
Q Consensus        88 -~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~l~---~~~~~~~~R~~~R~~~r~~---~~~----~~  155 (196)
                       .+...+....+..+|+|........+..+.+. ..... .++|++   .+++.+.+|+..+...+++   .+.    +.
T Consensus       112 ~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~-~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~~~e~~~~~  190 (469)
T 1bif_A          112 NDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGY-KTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATED  190 (469)
T ss_dssp             HHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTC-EEEEEEECCCCHHHHHHHHHHHTTTSTTTTTSCHHHHHHH
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEEEEEECCCHHHHHHHHHHhhhcCCcccCCCHHHHHHH
Confidence             12334433457789999988887776666442 11122 356666   5578888887765222232   122    34


Q ss_pred             HHHHHHHHHhcchhH
Q 029252          156 IRKRFKVFLESSLPV  170 (196)
Q Consensus       156 ~~~~~~~~~~~~~~~  170 (196)
                      +.+|+..|...+.++
T Consensus       191 ~~~R~~~y~~~ye~l  205 (469)
T 1bif_A          191 FMRRIECYENSYESL  205 (469)
T ss_dssp             HHHHHHHHHTTCCCC
T ss_pred             HHHHHHHhccEeEEC
Confidence            455666666666555

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.13  E-value=7.4e-10  Score=89.76  Aligned_cols=113  Identities=17%  Similarity=0.114  Sum_probs=68.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCC-----cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (196)
                      ..+.+|+++|++||||||+++.|+++++.     .+++.|. ++..+.....+...-....       ...+...+...+
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~-ir~~l~~~~~f~~~er~~~-------l~~i~~~~~~~l  441 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV-VRTHLSRGLGFSKEDRITN-------ILRVGFVASEIV  441 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH-HHHHTCTTCCSSHHHHHHH-------HHHHHHHHHHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH-hhhhhcccccccHHHHHHH-------HHHHHHHHHHHH
Confidence            34688999999999999999999998863     5677654 4544322222221100000       000112223333


Q ss_pred             HhcCCCeEEEeccCCCHHHHHHHHhhcCCCCc-EEEEEEcCHHHHHHHHh
Q 029252           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRIL  142 (196)
Q Consensus        94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~-~~i~l~~~~~~~~~R~~  142 (196)
                      .  .+..+|+|+..........+.+ ....++ .+|||++|.+++.+|+.
T Consensus       442 ~--~G~~VI~d~~~~~~~~r~~~~~-~l~~~d~~vV~L~~~~e~~~~Rl~  488 (546)
T 2gks_A          442 K--HNGVVICALVSPYRSARNQVRN-MMEEGKFIEVFVDAPVEVCEERDV  488 (546)
T ss_dssp             H--TTCEEEEECCCCCHHHHHHHHT-TSCTTCEEEEEEECCGGGHHHHCC
T ss_pred             h--CCCEEEEEcCCCCHHHHHHHHH-HhhcCCEEEEEEeCCHHHHHHHhh
Confidence            3  4778999975544444444444 222256 79999999999999975

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.08  E-value=6.1e-10  Score=79.52  Aligned_cols=38  Identities=29%  Similarity=0.441  Sum_probs=31.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLL   56 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~   56 (196)
                      .++.+|.|.|++||||||+++.|+..++  ..+++.|..+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~   43 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY   43 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence            4567899999999999999999999888  7777766543

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=99.07  E-value=1.8e-09  Score=82.06  Aligned_cols=27  Identities=19%  Similarity=0.131  Sum_probs=24.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      +++|+|.|+.||||||+++.|++.++.
T Consensus         7 ~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            7 IVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            578999999999999999999998853

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.06  E-value=4.1e-10  Score=80.37  Aligned_cols=134  Identities=13%  Similarity=0.126  Sum_probs=72.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHH--HHHcCCcchHHHHHHHHcCCCCCHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRA--EIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ   90 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (196)
                      ..++.++.|.|++||||||+++.|+..+.     ...+..|+....  ..........     ...............+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~   93 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPR-----KGAPETFDFEGFQRLCH   93 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGG-----TTSGGGBCHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhccccc-----CCCCchhhHHHHHHHHH
Confidence            35678999999999999999999998874     344554432211  1000000000     00000111122223333


Q ss_pred             HHHHh----------------------cC-CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--c
Q 029252           91 KAMEE----------------------SG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--N  145 (196)
Q Consensus        91 ~~l~~----------------------~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~  145 (196)
                      .....                      .. ...+|+||.....++. .|.. ....+|.++|++++.+++.+|+.+|  .
T Consensus        94 ~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~-~~~~-l~~~~d~~i~vd~~~~~~~~R~~~R~~~  171 (208)
T 3c8u_A           94 ALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAP-GWRD-LTAIWDVSIRLEVPMADLEARLVQRWLD  171 (208)
T ss_dssp             HHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCST-TGGG-GGGTCSEEEEECCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCc-hhHH-HHHhcCEEEEEeCCHHHHHHHHHHHHHh
Confidence            22111                      01 2578889854322221 1111 1234689999999999999999988  2


Q ss_pred             CCCCCCcHHHHHHHHH
Q 029252          146 QGREDDNVETIRKRFK  161 (196)
Q Consensus       146 ~~r~~~~~~~~~~~~~  161 (196)
                      .++   +.+.+.+++.
T Consensus       172 ~g~---t~~~~~~~~~  184 (208)
T 3c8u_A          172 HGL---NHDAAVARAQ  184 (208)
T ss_dssp             TTC---CHHHHHHHHH
T ss_pred             cCC---CHHHHHHHHH
Confidence            333   4556666554

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=99.04  E-value=5.8e-10  Score=84.44  Aligned_cols=38  Identities=16%  Similarity=0.252  Sum_probs=30.5

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDL   55 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d~   55 (196)
                      ...|.+|.|.|++||||||+++.|+..++       ..+++.|++
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            45678999999999999999999988774       345666654

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.02  E-value=3.6e-09  Score=86.15  Aligned_cols=114  Identities=14%  Similarity=0.111  Sum_probs=63.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHcCCcchHHHHH-HHHcCCCCCHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTMIQN-MIKEGKIVPSEVTIKLLQ   90 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~------~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   90 (196)
                      ..++.+|+|+|+|||||||+++.|+++++      +.+++.|. ++........+...-.. .+        ......+.
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~-ir~~l~~~~~f~~~er~~~i--------~ri~~v~~  463 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT-VRHELSSELGFTREDRHTNI--------QRIAFVAT  463 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH-HHHHTCTTCCCSHHHHHHHH--------HHHHHHHH
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH-HHHHhccccCCChhHHHHHH--------HHHHHHHH
Confidence            34568999999999999999999999976      24555544 44432222111110000 00        00111222


Q ss_pred             HHHHhcCCCeEEEeccCCCHHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHh
Q 029252           91 KAMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRIL  142 (196)
Q Consensus        91 ~~l~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~  142 (196)
                      ..+.  .+..+|.+........+..+.++ .......+|||++|.+++.+|..
T Consensus       464 ~~~~--~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~  514 (573)
T 1m8p_A          464 ELTR--AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK  514 (573)
T ss_dssp             HHHH--TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCS
T ss_pred             HHHh--CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhc
Confidence            2222  36667777433333333333332 11124579999999999999953

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=99.00  E-value=6.9e-09  Score=73.07  Aligned_cols=116  Identities=14%  Similarity=0.101  Sum_probs=73.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHc--CCcchHHH-----------------HHHHHcC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKS--GSENGTMI-----------------QNMIKEG   77 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~~~~~--~~~~~~~~-----------------~~~~~~~   77 (196)
                      ++.+|+|+|.|||||+|+|+.+.+.++   +.+++++|.++.....  +-.....+                 ......+
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d   89 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQAD   89 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcC
Confidence            457999999999999999999988885   6789999999964332  21211110                 0001111


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           78 KIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        78 ~~~~~~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ..+    +   +...+.......|||+|. +..++.+.|.+ ....-..+|.+.+++++..+|...+
T Consensus        90 ~~~----~---~~~~~~~~~~~~vII~dv-R~~~Ev~~fr~-~~g~~~~iirI~as~~~R~~Rg~~~  147 (202)
T 3ch4_B           90 PGF----F---CRKIVEGISQPIWLVSDT-RRVSDIQWFRE-AYGAVTQTVRVVALEQSRQQRGWVF  147 (202)
T ss_dssp             TTT----T---HHHHSBTCCCSEEEECCC-CSHHHHHHHHH-HHGGGEEEEEEEECHHHHHHTTCCC
T ss_pred             chH----H---HHHHHHhcCCCcEEEeCC-CCHHHHHHHHH-hCCCcEEEEEEECCHHHHHHHhhhc
Confidence            000    0   011111223457899986 66777788776 3332245899999999999996433

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.99  E-value=6.8e-09  Score=72.81  Aligned_cols=114  Identities=13%  Similarity=0.134  Sum_probs=62.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHcCC--cchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGS--ENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      +.+++|.|++||||||+++.|+..++. .+++.+++.... ..+.  +.........     + .............  .
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~~~~~~~~~~~~~-----~-~~~l~~~~~~~~~--~   72 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGYRPPWESDELLAL-----T-WKNITDLTVNFLL--A   72 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTCCCGGGCHHHHHH-----H-HHHHHHHHHHHHH--T
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-ccccccCccchhHHHH-----H-HHHHHHHHHHHHh--c
Confidence            457999999999999999999987765 667776653321 1110  0000000000     0 0001111111222  3


Q ss_pred             CCeEEEeccCCCHHHHHHHHhh---cCCC-CcEEEEEEcCHHHHHHHHhhc
Q 029252           98 NDKFLIDGFPRNEENRAAFEAV---TKIE-PEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~---~~~~-~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      +..+|+|+.. .......+...   .... ...+++|.++++++.+|...|
T Consensus        73 ~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r  122 (189)
T 2bdt_A           73 QNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALR  122 (189)
T ss_dssp             TCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTS
T ss_pred             CCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhc
Confidence            5578899853 33332322221   1222 234788999999999999988

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=98.97  E-value=5e-09  Score=79.67  Aligned_cols=28  Identities=18%  Similarity=0.114  Sum_probs=25.2

Q ss_pred             CCcEEEEEcCCCCChHHHH-HHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQC-ANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla-~~L~~~~~~   47 (196)
                      +++.|+|.|+.||||||++ +.|++.++.
T Consensus        11 ~~~~I~iEG~~GaGKTT~~~~~L~~~l~~   39 (341)
T 1osn_A           11 GVLRIYLDGAYGIGKTTAAEEFLHHFAIT   39 (341)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            4588999999999999999 999998864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.93  E-value=2e-08  Score=75.84  Aligned_cols=36  Identities=14%  Similarity=0.284  Sum_probs=29.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGD   54 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d   54 (196)
                      ..+.+|.|.|++||||||+++.|+..++       ..++++|+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~  120 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG  120 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence            4568999999999999999999998776       44555554

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.88  E-value=3.1e-10  Score=86.06  Aligned_cols=36  Identities=19%  Similarity=0.526  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~   55 (196)
                      ++.+|+|.||+||||||++..|+++++..+++.|.+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            346899999999999999999999999999988665

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=98.87  E-value=1.5e-08  Score=75.56  Aligned_cols=148  Identities=10%  Similarity=0.034  Sum_probs=83.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   95 (196)
                      ..+++|++.|..||||||.++.|.+.++-   .++...          .+......      ..+     ...+...+- 
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~----------~Pt~eE~~------~~y-----l~R~~~~LP-  141 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT----------KPTETERG------QWY-----FQRYVATFP-  141 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC----------SCCHHHHT------SCT-----THHHHTTCC-
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC----------CcChHHHh------chH-----HHHHHHhcc-
Confidence            45899999999999999999999999853   333321          11111111      111     112222221 


Q ss_pred             cCCCeEEEeccCCC------------HH----HHHHHHh---h--cCCCCcEEEEEEcCHHHHHHHHhhc-c--CCCCCC
Q 029252           96 SGNDKFLIDGFPRN------------EE----NRAAFEA---V--TKIEPEFVLFFDCSEEEMERRILNR-N--QGREDD  151 (196)
Q Consensus        96 ~~~~~~iidg~~~~------------~~----~~~~~~~---~--~~~~~~~~i~l~~~~~~~~~R~~~R-~--~~r~~~  151 (196)
                      ..+..+|.|.+...            .+    ....+..   .  ....+++.|||++++++..+|+..| .  ..+...
T Consensus       142 ~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~Wk~  221 (304)
T 3czq_A          142 TAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKIWKL  221 (304)
T ss_dssp             CTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTGGGC
T ss_pred             cCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcccccCC
Confidence            13888999974311            11    1111111   1  2457889999999999999999887 1  111123


Q ss_pred             cHHHHHH--HHHHHHhcchhHHHHHH-hcCcEEEEeCCCC
Q 029252          152 NVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKVIFCSP  188 (196)
Q Consensus       152 ~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~  188 (196)
                      +...+++  .+..|......++..-. ...++++|+++..
T Consensus       222 s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk  261 (304)
T 3czq_A          222 SPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDK  261 (304)
T ss_dssp             CHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCc
Confidence            3333332  23444433333333222 2347999999864

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=98.84  E-value=1.9e-08  Score=76.25  Aligned_cols=26  Identities=27%  Similarity=0.234  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .+.|+|.|+.||||||+++.|++.++
T Consensus         4 ~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            4 LLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            46899999999999999999998875

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=98.82  E-value=3.4e-08  Score=75.95  Aligned_cols=27  Identities=26%  Similarity=0.227  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ++++|+|.|+.||||||+++.|++.++
T Consensus        48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           48 TLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             EEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            457899999999999999999998875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.80  E-value=6e-07  Score=61.89  Aligned_cols=136  Identities=18%  Similarity=0.198  Sum_probs=75.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (196)
                      ..+.+++|.|++||||||+++.+..  +...++.|. ++..+....... .+....       .+.........+.  .+
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~d~-~~g~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~--~g   73 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHFK--PTEVISSDF-CRGLMSDDENDQ-TVTGAA-------FDVLHYIVSKRLQ--LG   73 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEHHH-HHHHHCSSTTCG-GGHHHH-------HHHHHHHHHHHHH--TT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHcc--CCeEEccHH-HHHHhcCcccch-hhHHHH-------HHHHHHHHHHHHh--CC
Confidence            3567899999999999999998542  445555543 444333221100 000000       0011112222222  36


Q ss_pred             CeEEEeccCCCHHHHH---HHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhH
Q 029252           99 DKFLIDGFPRNEENRA---AFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV  170 (196)
Q Consensus        99 ~~~iidg~~~~~~~~~---~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  170 (196)
                      ...++|..+.......   .+.......| .+++||.|...+..|...|  .....+.+.+.............+
T Consensus        74 ~~~~~~~~~~~s~g~~qrv~iAral~~~p-~~lllDEPt~~Ld~~~~~R--~~~~~~~~vi~~~~~~l~~~l~~l  145 (171)
T 4gp7_A           74 KLTVVDATNVQESARKPLIEMAKDYHCFP-VAVVFNLPEKVCQERNKNR--TDRQVEEYVIRKHTQQMKKSIKGL  145 (171)
T ss_dssp             CCEEEESCCCSHHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHTC--SSCCCCHHHHHHHHHHHHHHSTTH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHHcCCcE-EEEEEeCCHHHHHHHHhcc--cCCCCCHHHHHHHHHHhhhhhhhH
Confidence            6677887554443222   2222133334 5999999999999999988  334566666766555555444444

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.79  E-value=4.4e-09  Score=76.20  Aligned_cols=27  Identities=15%  Similarity=0.271  Sum_probs=17.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHH-HHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIV-EHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~-~~~   45 (196)
                      .++.+++|.||+||||||+++.|+ ..+
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            356789999999999999999999 665

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.78  E-value=1.4e-08  Score=71.57  Aligned_cols=34  Identities=9%  Similarity=0.245  Sum_probs=26.4

Q ss_pred             hcccCCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        13 ~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ...+++.++.+|+|.||+||||||+++.|.+.+.
T Consensus        11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             -----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3456667788999999999999999999998765

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.77  E-value=3.7e-08  Score=71.95  Aligned_cols=32  Identities=38%  Similarity=0.635  Sum_probs=26.7

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~   48 (196)
                      ...++.+|.|.|++||||||+++.|+..+|..
T Consensus        21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             --CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            34456899999999999999999999988754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.75  E-value=2.4e-07  Score=66.55  Aligned_cols=135  Identities=18%  Similarity=0.267  Sum_probs=73.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHH---HHcCC----cchHHHHHHHHcCCCCCH--------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAE---IKSGS----ENGTMIQNMIKEGKIVPS--------   82 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~--~~~~~~d~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~--------   82 (196)
                      .+.+++|.||+||||||+++.|+..+..  ...+.....+..   ...+.    .....+......+.+..+        
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y   94 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY   94 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence            4579999999999999999999987641  111110000000   00000    011222222221111000        


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252           83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV  162 (196)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~  162 (196)
                      ......+...+.  .+..+|+|   ........+.+ .......+++...+.+.+.+|+..|  |  .++.+.+..|+..
T Consensus        95 g~~~~~v~~~l~--~G~illLD---LD~~~~~~i~~-~l~~~~tI~i~th~~~~l~~Rl~~r--G--~~~~e~i~~rl~~  164 (219)
T 1s96_A           95 GTSREAIEQVLA--TGVDVFLD---IDWQGAQQIRQ-KMPHARSIFILPPSKIELDRRLRGR--G--QDSEEVIAKRMAQ  164 (219)
T ss_dssp             EEEHHHHHHHHT--TTCEEEEE---CCHHHHHHHHH-HCTTCEEEEEECSSHHHHHHHHHTT--S--CSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHh--cCCeEEEE---ECHHHHHHHHH-HccCCEEEEEECCCHHHHHHHHHHc--C--CCCHHHHHHHHHH
Confidence            001233444554  37889999   55555555555 2323334555566789999999777  4  5677888888876


Q ss_pred             HH
Q 029252          163 FL  164 (196)
Q Consensus       163 ~~  164 (196)
                      ..
T Consensus       165 a~  166 (219)
T 1s96_A          165 AV  166 (219)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.70  E-value=5.9e-08  Score=67.98  Aligned_cols=116  Identities=22%  Similarity=0.305  Sum_probs=63.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHH--HH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA--ME   94 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~   94 (196)
                      .++.+++|.|+|||||||+++.|+..++.  .+++.+++.... ......+...+.. .     +.......+...  ..
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~-~-----~~~~v~~~l~~~~~~~   79 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDPWLPQSH-Q-----QNRMIMQIAADVAGRY   79 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCTTSSSHH-H-----HHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccCCccchh-h-----hhHHHHHHHHHHHHHH
Confidence            45678999999999999999999987643  367766654321 1100000000000 0     011111111111  11


Q ss_pred             hcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           95 ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        95 ~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ...+..+++|+..... ....+.. .. .....+++.++.+++..|...|
T Consensus        80 ~~~~~~~~~~~~~~~~-~l~~~~~-~~-~~~~~ls~~~~~~v~~~R~~~r  126 (191)
T 1zp6_A           80 AKEGYFVILDGVVRPD-WLPAFTA-LA-RPLHYIVLRTTAAEAIERCLDR  126 (191)
T ss_dssp             HHTSCEEEECSCCCTT-TTHHHHT-TC-SCEEEEEEECCHHHHHHHHHTT
T ss_pred             hccCCeEEEeccCcHH-HHHHHHh-cC-CCeEEEEecCCHHHHHHHHHhc
Confidence            1135567888754321 2222222 12 2235899999999999999988

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.64  E-value=6.5e-07  Score=67.65  Aligned_cols=28  Identities=21%  Similarity=0.249  Sum_probs=24.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...+.++.|.|++||||||+++.|+..+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            4567899999999999999999999866

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.62  E-value=4.1e-07  Score=64.29  Aligned_cols=25  Identities=28%  Similarity=0.492  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +..++|.||+||||||+++.|...+
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4679999999999999999998765

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.60  E-value=1.6e-08  Score=76.35  Aligned_cols=36  Identities=17%  Similarity=0.380  Sum_probs=32.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~   55 (196)
                      ++.+|+|.||+||||||+++.|+++++..+++.|.+
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            567899999999999999999999999988888664

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.53  E-value=2.5e-07  Score=75.01  Aligned_cols=113  Identities=15%  Similarity=0.144  Sum_probs=50.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC------CcEecHHHHHHHHHHcCCcchHH-HHHHHHcCCCCCHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTM-IQNMIKEGKIVPSEVTIKLLQK   91 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~------~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   91 (196)
                      .++.+|+|.|++||||||+++.|+..++      +.+++.|++... ......+... ......        . ...+..
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-l~~~l~f~~~~r~~~~r--------~-i~~v~q  436 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-LSSELGFSKAHRDVNVR--------R-IGFVAS  436 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-TTSSCCCSHHHHHHHHH--------H-HHHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-hccccCCCHHHHHHHHH--------H-HHHHHH
Confidence            3568999999999999999999999884      334676665432 1111111110 000000        0 111111


Q ss_pred             HHHhcCCCeEEEeccCCCHHHHHHHHhh-cCCCCcEEEEEEcCHHHHHHHHh
Q 029252           92 AMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRIL  142 (196)
Q Consensus        92 ~l~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~  142 (196)
                      .+.. .+..++..+............++ .......+|||++|.+++.+|..
T Consensus       437 ~l~~-~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~  487 (552)
T 3cr8_A          437 EITK-NRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDR  487 (552)
T ss_dssp             HHHH-TTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC----------
T ss_pred             HHHh-cCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcc
Confidence            1221 24555554432112222222221 11123469999999999999964

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.52  E-value=3.1e-08  Score=75.32  Aligned_cols=36  Identities=22%  Similarity=0.450  Sum_probs=32.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~   55 (196)
                      ++.+|+|.||+||||||+++.|++.++..+++.|++
T Consensus         6 m~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            6 KPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             CCceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            346899999999999999999999999888988776

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.48  E-value=7.9e-08  Score=72.02  Aligned_cols=37  Identities=19%  Similarity=0.357  Sum_probs=32.4

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d   54 (196)
                      ..++.+|+|.||+||||||++..|+++++..+++.|.
T Consensus         7 ~~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds   43 (316)
T 3foz_A            7 ASLPKAIFLMGPTASGKTALAIELRKILPVELISVDS   43 (316)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred             CCCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence            3457899999999999999999999999988887654

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.45  E-value=6.4e-07  Score=71.56  Aligned_cols=148  Identities=14%  Similarity=0.089  Sum_probs=76.6

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   94 (196)
                      ...+++|++.|..||||+|..+.|.+.++-   .++...          .+.....      +..+     .......+ 
T Consensus        40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~----------~Pt~~E~------~~~y-----l~R~~~~l-   97 (500)
T 3czp_A           40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFL----------RPSDEEL------ERPP-----QWRFWRRL-   97 (500)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECS----------SCCHHHH------TSCT-----THHHHHHC-
T ss_pred             CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhc------cCCh-----hhhHHHhC-
Confidence            356899999999999999999999999963   233221          1111111      0111     11111111 


Q ss_pred             hcCCCeEEEeccC------------CCHH-------HHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc-c--CCCCC
Q 029252           95 ESGNDKFLIDGFP------------RNEE-------NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-N--QGRED  150 (196)
Q Consensus        95 ~~~~~~~iidg~~------------~~~~-------~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R-~--~~r~~  150 (196)
                      -..+..+|.|++.            ...+       +...|+..  ....+++.|||+++.++..+|+..| .  ..+-.
T Consensus        98 P~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk  177 (500)
T 3czp_A           98 PPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHSWK  177 (500)
T ss_dssp             CCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC------------
T ss_pred             CCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCC
Confidence            1137788888642            1111       11112111  5666788999999999999999998 1  11000


Q ss_pred             CcHHHH--HHHHHHHHhcchhHHHHHH-hcCcEEEEeCCC
Q 029252          151 DNVETI--RKRFKVFLESSLPVVQYYE-AKGKVRKVIFCS  187 (196)
Q Consensus       151 ~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~  187 (196)
                      .+...+  .+++..|......++..-. ...++++|+++.
T Consensus       178 ~s~~D~~~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~d  217 (500)
T 3czp_A          178 LSPLDWKQSEVYDRFVHYGERVLRRTSRDYAPWYVVEGAD  217 (500)
T ss_dssp             -CSSCTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSC
T ss_pred             CCHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCC
Confidence            111111  1223334333333433222 223799999986

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.44  E-value=9.7e-08  Score=71.65  Aligned_cols=36  Identities=17%  Similarity=0.297  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~   55 (196)
                      ++++|+|.||+||||||++..|+++++..+++.|..
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            457899999999999999999999999888877654

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.39  E-value=6.9e-07  Score=71.36  Aligned_cols=147  Identities=10%  Similarity=0.082  Sum_probs=81.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC---CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   95 (196)
                      ..+++|++.|..||||+|..+.|.+.++   +.++...          .+.....      +....     ......+ -
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~----------~Pt~~E~------~~~yl-----~R~~~~l-P  355 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA----------APTEEER------AQPYL-----WRFWRHI-P  355 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC----------SCCHHHH------TSCTT-----HHHHTTC-C
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC----------CCChhhh------cchHH-----HHHHHhC-C
Confidence            4679999999999999999999999885   3333321          1111111      11111     1111111 1


Q ss_pred             cCCCeEEEeccCCC------------HHHHH-HHHhh--------cCCCCcEEEEEEcCHHHHHHHHhhc-c--CCCCCC
Q 029252           96 SGNDKFLIDGFPRN------------EENRA-AFEAV--------TKIEPEFVLFFDCSEEEMERRILNR-N--QGREDD  151 (196)
Q Consensus        96 ~~~~~~iidg~~~~------------~~~~~-~~~~~--------~~~~~~~~i~l~~~~~~~~~R~~~R-~--~~r~~~  151 (196)
                      ..+..+|.|++...            .++.. .+.++        ....+.+.|||+++.++..+|+..| .  ..+-..
T Consensus       356 ~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~Wk~  435 (500)
T 3czp_A          356 ARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKRYKI  435 (500)
T ss_dssp             CTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTTSCC
T ss_pred             CCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCC
Confidence            13888999974321            11111 11111        4555778999999999999999999 2  221112


Q ss_pred             cHHHHH--HHHHHHHhcchhHHHHHH-hcCcEEEEeCCC
Q 029252          152 NVETIR--KRFKVFLESSLPVVQYYE-AKGKVRKVIFCS  187 (196)
Q Consensus       152 ~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~  187 (196)
                      +...++  +....|.......+..-. ...++++|+++.
T Consensus       436 s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~d  474 (500)
T 3czp_A          436 TEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEAND  474 (500)
T ss_dssp             CSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSS
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCC
Confidence            211222  223334433334443333 233799999886

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=98.39  E-value=4.1e-06  Score=61.76  Aligned_cols=144  Identities=10%  Similarity=0.089  Sum_probs=82.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC---cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (196)
                      .+.+|++.|..||||+++.+.|.+.++-   .+....          .+....      .....        +.+.....
T Consensus        74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~----------~Pt~eE------~~~~y--------lwR~~~~l  129 (289)
T 3rhf_A           74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFK----------APTDEE------KSHDF--------LWRIEKQV  129 (289)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECC----------SCCHHH------HTSCT--------THHHHTTC
T ss_pred             CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECC----------CCChhh------hcCCH--------HHHHHHhC
Confidence            5789999999999999999999999963   333221          111110      01111        11122222


Q ss_pred             --CCCeEEEeccCCC------------HH-------HHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc---cCCCCC
Q 029252           97 --GNDKFLIDGFPRN------------EE-------NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR---NQGRED  150 (196)
Q Consensus        97 --~~~~~iidg~~~~------------~~-------~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R---~~~r~~  150 (196)
                        .+..+|+|++...            .+       +...|+..  ......+-+||.++.++..+|+.+|   ...+-.
T Consensus       130 P~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~WK  209 (289)
T 3rhf_A          130 PAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHWK  209 (289)
T ss_dssp             CCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGGG
T ss_pred             CCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCccccc
Confidence              3888899964311            11       11122221  4445556899999999999999998   222233


Q ss_pred             CcHHHHHHH--HHHHHhcchhHHHHHH-hcCcEEEEeCCC
Q 029252          151 DNVETIRKR--FKVFLESSLPVVQYYE-AKGKVRKVIFCS  187 (196)
Q Consensus       151 ~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~id~~~  187 (196)
                      .+...+.++  ...|......++..-. ...++++|+++.
T Consensus       210 ~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~add  249 (289)
T 3rhf_A          210 YSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANK  249 (289)
T ss_dssp             CCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCC
Confidence            444444442  3444443333433322 234799999875

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.32  E-value=4.1e-07  Score=63.25  Aligned_cols=28  Identities=14%  Similarity=0.310  Sum_probs=24.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .++.+++|.|||||||||+++.|+..+.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3557899999999999999999998763

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.27  E-value=5.5e-07  Score=70.69  Aligned_cols=36  Identities=19%  Similarity=0.411  Sum_probs=30.8

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      .....|.-|++.||||||||++|+.+|..++..++.
T Consensus       201 ~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~  236 (428)
T 4b4t_K          201 IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR  236 (428)
T ss_dssp             HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence            345567889999999999999999999999876654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.26  E-value=7e-07  Score=70.24  Aligned_cols=36  Identities=28%  Similarity=0.506  Sum_probs=30.9

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      .....|.-|+|+||||||||++|+.+|..++..++.
T Consensus       210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~  245 (437)
T 4b4t_L          210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF  245 (437)
T ss_dssp             HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            345567899999999999999999999999976654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.26  E-value=6.6e-07  Score=70.32  Aligned_cols=36  Identities=22%  Similarity=0.397  Sum_probs=30.7

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      .....|..|++.||||||||++|+.+|..++..++.
T Consensus       210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~  245 (434)
T 4b4t_M          210 MGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLK  245 (434)
T ss_dssp             HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence            344567889999999999999999999999976654

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.26  E-value=6.1e-07  Score=69.69  Aligned_cols=36  Identities=22%  Similarity=0.475  Sum_probs=30.7

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      .....|.-+++.||||+|||++|+.+|..++..++.
T Consensus       177 ~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~  212 (405)
T 4b4t_J          177 LGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR  212 (405)
T ss_dssp             HTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence            345567789999999999999999999999976654

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=98.26  E-value=9.4e-07  Score=64.19  Aligned_cols=40  Identities=18%  Similarity=0.342  Sum_probs=35.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK   61 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~   61 (196)
                      ++|.|+|++||||||+++.|.+++|+.++..++.+++.+.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~   41 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA   41 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence            5799999999999999999998899999998887776543

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=98.26  E-value=4.9e-07  Score=70.14  Aligned_cols=34  Identities=18%  Similarity=0.390  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d   54 (196)
                      +++|+|.||+||||||++..|+++++..+++.|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            4689999999999999999999999988888755

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.25  E-value=9e-07  Score=66.33  Aligned_cols=38  Identities=37%  Similarity=0.730  Sum_probs=30.4

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDL   55 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~--~~~~~d~   55 (196)
                      ...|..++|.||||+|||++|+.+++.++..  .++..++
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l   72 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL   72 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence            3456789999999999999999999999854  4455444

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.17  E-value=1.2e-06  Score=69.03  Aligned_cols=36  Identities=19%  Similarity=0.424  Sum_probs=31.0

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      ..-..|.-|+|.||||+|||++|+.+|..++..++.
T Consensus       238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~  273 (467)
T 4b4t_H          238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR  273 (467)
T ss_dssp             HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence            445567899999999999999999999999976654

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.16  E-value=1.5e-06  Score=67.89  Aligned_cols=36  Identities=28%  Similarity=0.489  Sum_probs=30.9

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      .....|.-|++.||||+|||++|+.+|..++..++.
T Consensus       211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~  246 (437)
T 4b4t_I          211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR  246 (437)
T ss_dssp             HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence            444567889999999999999999999999976654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.14  E-value=1.9e-06  Score=64.38  Aligned_cols=40  Identities=30%  Similarity=0.383  Sum_probs=31.3

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEe-cHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHL-SAGDLL   56 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~-~~~d~~   56 (196)
                      ...++.+|.|.|++||||||+++.|+..++       ...+ +.|+++
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            345678999999999999999999998774       3345 666654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.12  E-value=3.3e-06  Score=58.48  Aligned_cols=40  Identities=20%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh----C--CcEecHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRA   58 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~----~--~~~~~~~d~~~~   58 (196)
                      ..+..++|.|++||||||+++.++..+    +  ..+++..++...
T Consensus        36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~   81 (180)
T 3ec2_A           36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR   81 (180)
T ss_dssp             GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            346789999999999999999999876    3  345666665544

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=98.10  E-value=1.6e-06  Score=69.59  Aligned_cols=36  Identities=6%  Similarity=0.039  Sum_probs=30.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCC-------cEecHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-------THLSAGD   54 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~-------~~~~~~d   54 (196)
                      ..+.+|+|.|+|||||||+++.|+++|+.       .+++.|+
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            35689999999999999999999999985       4666544

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.07  E-value=4.1e-06  Score=61.36  Aligned_cols=32  Identities=28%  Similarity=0.436  Sum_probs=27.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ..+..++|.|+||+||||+++.+++.++..++
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~   68 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFL   68 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            34567999999999999999999999986544

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.06  E-value=4.4e-06  Score=61.19  Aligned_cols=31  Identities=26%  Similarity=0.416  Sum_probs=26.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      .+..++|.|+|||||||+++.++..++..++
T Consensus        44 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~   74 (257)
T 1lv7_A           44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF   74 (257)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence            3456999999999999999999999875443

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=98.05  E-value=2e-06  Score=60.29  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=27.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~   52 (196)
                      .+..|+|.|+|||||||+|..|+++.+ .+++.
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsd   64 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH-RLIAD   64 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEec
Confidence            457799999999999999999998876 55554

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.04  E-value=1.4e-05  Score=59.82  Aligned_cols=129  Identities=16%  Similarity=0.223  Sum_probs=72.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHc---CC----c-chHHHHHHHHcCCCCCHH------
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKS---GS----E-NGTMIQNMIKEGKIVPSE------   83 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~~~---~~----~-~~~~~~~~~~~~~~~~~~------   83 (196)
                      ..+..|+|.||   ||+|+.+.|.+.+. ...++.....|..-.+   +.    - ..+.+..++..|.++.+.      
T Consensus       103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~  179 (295)
T 1kjw_A          103 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHL  179 (295)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcE
Confidence            45678899998   79999999998764 2223322222221111   00    0 234556666666554321      


Q ss_pred             --HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcC-HHHHHHHHhhccCCCCCCcHHHHHHHH
Q 029252           84 --VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRF  160 (196)
Q Consensus        84 --~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~r~~~~~~~~~~~~  160 (196)
                        +....+...+.  .++.+|+|..+...   ..+.. ....| ++||+..| .+++.+ +..|  +    +.+.+++|+
T Consensus       180 YGt~~~~V~~~~~--~G~~vildid~~g~---~~l~~-~~~~p-i~IfI~pps~~~L~~-L~~R--~----t~~~i~~rl  245 (295)
T 1kjw_A          180 YGTSVQSVREVAE--QGKHCILDVSANAV---RRLQA-AHLHP-IAIFIRPRSLENVLE-INKR--I----TEEQARKAF  245 (295)
T ss_dssp             EEEEHHHHHHHHH--TTCEEEECCCTTHH---HHHHH-TTCCC-EEEEECCSSHHHHHH-HCTT--S----CHHHHHHHH
T ss_pred             eeeeHHHHHHHHh--cCCeEEEEeCHHHH---HHHHh-cccCC-eEEEEECCCHHHHHH-HHhc--C----CHHHHHHHH
Confidence              12455666665  48889998654332   22332 33344 78888877 455554 7666  2    235577777


Q ss_pred             HHHH
Q 029252          161 KVFL  164 (196)
Q Consensus       161 ~~~~  164 (196)
                      ....
T Consensus       246 ~~a~  249 (295)
T 1kjw_A          246 DRAT  249 (295)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.03  E-value=3.5e-06  Score=58.44  Aligned_cols=26  Identities=38%  Similarity=0.650  Sum_probs=23.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      +.++|.|++||||||+++.|+..++.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i   26 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            36899999999999999999988763

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.03  E-value=4.7e-06  Score=61.94  Aligned_cols=32  Identities=22%  Similarity=0.448  Sum_probs=27.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ..+..++|.|+||+||||+++.+++.++..++
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~   80 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETNATFI   80 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            45577999999999999999999999986544

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.02  E-value=4.8e-06  Score=62.57  Aligned_cols=41  Identities=22%  Similarity=0.296  Sum_probs=32.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAE   59 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~--~~~~d~~~~~   59 (196)
                      ..+..++|.|+|||||||+|+.+++.++..+  ++..++....
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~   89 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW   89 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence            4567899999999999999999999987544  4555665544

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.99  E-value=6e-06  Score=61.74  Aligned_cols=31  Identities=23%  Similarity=0.398  Sum_probs=26.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      .+..++|.|+||+||||+++.+++.++..++
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~   83 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFL   83 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence            3578999999999999999999999885544

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.97  E-value=5.6e-06  Score=58.35  Aligned_cols=30  Identities=10%  Similarity=0.150  Sum_probs=25.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ...+++.||||+||||+|..|++.+...++
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~   87 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI   87 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence            467999999999999999999998865444

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.97  E-value=1.3e-06  Score=66.80  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=28.2

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~   49 (196)
                      ........|+|.|+|||||||+++.|++.++..+
T Consensus        19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           19 IEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             TTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             hccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            3444456799999999999999999999988665

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.97  E-value=7.5e-06  Score=62.09  Aligned_cols=36  Identities=25%  Similarity=0.448  Sum_probs=29.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDL   55 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~   55 (196)
                      .+..++|.|+||+|||++|+.+++.++..++  +..++
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l   87 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL   87 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence            3567999999999999999999999986544  44444

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.95  E-value=9.7e-06  Score=60.13  Aligned_cols=29  Identities=28%  Similarity=0.512  Sum_probs=24.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~   49 (196)
                      +.-++|.|||||||||+++.++..++...
T Consensus        44 ~~GvlL~Gp~GtGKTtLakala~~~~~~~   72 (274)
T 2x8a_A           44 PAGVLLAGPPGCGKTLLAKAVANESGLNF   72 (274)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHcCCCE
Confidence            34499999999999999999999887533

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.94  E-value=8.3e-06  Score=60.26  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=27.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ...+..++|.|+||+|||++|+.+++.++..++
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~   93 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI   93 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            344578999999999999999999999886554

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.94  E-value=4.7e-06  Score=65.67  Aligned_cols=33  Identities=15%  Similarity=0.343  Sum_probs=28.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~   52 (196)
                      .+..|+|.||||+||||+++.|++.++..++..
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v   81 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   81 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCCCceee
Confidence            346699999999999999999999998766543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.93  E-value=5.3e-06  Score=59.40  Aligned_cols=27  Identities=26%  Similarity=0.486  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+++|.||+||||||+++.|+..+
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            456789999999999999999998865

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.92  E-value=3e-05  Score=65.45  Aligned_cols=40  Identities=25%  Similarity=0.368  Sum_probs=31.8

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec--HHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLL   56 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~--~~d~~   56 (196)
                      ....+.-+++.||||+|||.+|+.++..++..++.  ..+++
T Consensus       507 g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~  548 (806)
T 3cf2_A          507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL  548 (806)
T ss_dssp             CCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred             CCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence            34456779999999999999999999999876654  44444

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.92  E-value=5.9e-06  Score=63.69  Aligned_cols=31  Identities=16%  Similarity=0.314  Sum_probs=26.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      .+..++|.||||+|||++|+.+++.++..++
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~   80 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFT   80 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            3456899999999999999999999986554

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.92  E-value=9.4e-06  Score=56.17  Aligned_cols=27  Identities=19%  Similarity=0.450  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+..++|.|+||+||||+++.+++.+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            445678999999999999999999986

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.91  E-value=9.7e-06  Score=61.53  Aligned_cols=30  Identities=20%  Similarity=0.325  Sum_probs=25.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh-CCcE
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTH   49 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~-~~~~   49 (196)
                      .+..++|.||||+|||++|+.+++.+ +..+
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~   74 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEANNSTF   74 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence            45789999999999999999999988 5443

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.91  E-value=7.7e-06  Score=58.01  Aligned_cols=30  Identities=23%  Similarity=0.235  Sum_probs=24.2

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .-.++.+++|.|++||||||+++.|+..+.
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            334567999999999999999999987664

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.90  E-value=1.2e-05  Score=62.24  Aligned_cols=35  Identities=29%  Similarity=0.296  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      ....+.+++|.|||||||||+++.|+..++..++.
T Consensus       165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            34456799999999999999999999988765554

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.89  E-value=6.9e-06  Score=69.21  Aligned_cols=36  Identities=25%  Similarity=0.456  Sum_probs=30.3

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      .....|.-|+|.||||+|||++|+.+++.++..++.
T Consensus       233 ~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~  268 (806)
T 3cf2_A          233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL  268 (806)
T ss_dssp             CCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEE
T ss_pred             cCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence            344567889999999999999999999999866553

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.88  E-value=2e-05  Score=55.49  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=28.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRA   58 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~~   58 (196)
                      ..++|.|++|+||||+++.++..+   +  ..+++..++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~   96 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE   96 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence            789999999999999999999877   2  334566555444

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.87  E-value=1.1e-05  Score=61.52  Aligned_cols=28  Identities=29%  Similarity=0.354  Sum_probs=24.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~   48 (196)
                      +..++|.||||+||||+++.++..++..
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~   78 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASELQTN   78 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            3568999999999999999999998643

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.87  E-value=1.2e-05  Score=55.19  Aligned_cols=25  Identities=32%  Similarity=0.166  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..++.|.|++||||||++..|...+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            4579999999999999999999876

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.86  E-value=1.2e-05  Score=61.82  Aligned_cols=36  Identities=25%  Similarity=0.448  Sum_probs=28.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDL   55 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~   55 (196)
                      .+..++|.|+||+|||++|+.+++.++..++  +..++
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l  120 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL  120 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence            3456899999999999999999999986554  44443

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.86  E-value=1.7e-05  Score=57.91  Aligned_cols=28  Identities=25%  Similarity=0.436  Sum_probs=24.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~   48 (196)
                      +..++|.|+|||||||+++.++..++..
T Consensus        49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~   76 (254)
T 1ixz_A           49 PKGVLLVGPPGVGKTHLARAVAGEARVP   76 (254)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3449999999999999999999987643

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.86  E-value=1.2e-05  Score=60.34  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+..++|.|+||+|||++|+.+++.+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            345679999999999999999999887

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.85  E-value=1.4e-05  Score=59.93  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=26.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      .+..++|.|+||+|||++++.+++.++..++
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~   79 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFI   79 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            3456899999999999999999999975443

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.85  E-value=9.8e-06  Score=55.89  Aligned_cols=27  Identities=22%  Similarity=0.433  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+..++|.|+||+||||+++.+++.+
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            445678999999999999999999987

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.82  E-value=1.7e-05  Score=54.77  Aligned_cols=26  Identities=15%  Similarity=0.212  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +..+++|.|++||||||+++.|...+
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            34689999999999999999998865

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.82  E-value=1.2e-05  Score=54.01  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ....++|.|++||||||+++.++..+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            55789999999999999999999876

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.82  E-value=1.7e-05  Score=61.05  Aligned_cols=31  Identities=29%  Similarity=0.498  Sum_probs=27.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      .+..++|.|+||+|||++|+.+++.++..++
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~  146 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFF  146 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence            4578999999999999999999999986544

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.82  E-value=5.6e-06  Score=60.96  Aligned_cols=30  Identities=23%  Similarity=0.442  Sum_probs=25.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      +..++|.|+||+|||++|+.+++.++..++
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~   73 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFF   73 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            345889999999999999999999875544

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.82  E-value=1.6e-05  Score=53.99  Aligned_cols=27  Identities=26%  Similarity=0.490  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+++|.|++||||||+++.++..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            456789999999999999999999876

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.81  E-value=1.6e-05  Score=57.26  Aligned_cols=27  Identities=11%  Similarity=0.160  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .+..++|.|+||+||||+++.+++.+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999998763

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.80  E-value=1.2e-05  Score=62.24  Aligned_cols=30  Identities=20%  Similarity=0.420  Sum_probs=25.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      +..++|.|+||+||||+|+.+++.++..++
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~  101 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIA  101 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            456899999999999999999999975544

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.79  E-value=2.4e-05  Score=62.31  Aligned_cols=32  Identities=19%  Similarity=0.411  Sum_probs=27.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      .|.-++|.||||+||||+++.++...+.+++.
T Consensus        48 ~p~gvLL~GppGtGKT~Laraia~~~~~~f~~   79 (476)
T 2ce7_A           48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFH   79 (476)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence            45669999999999999999999999866543

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.78  E-value=2e-05  Score=59.31  Aligned_cols=26  Identities=38%  Similarity=0.507  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++.+++|.|++||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            56799999999999999999999766

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.76  E-value=2e-05  Score=59.17  Aligned_cols=33  Identities=21%  Similarity=0.524  Sum_probs=26.9

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~   49 (196)
                      .-+++.+++|.|++||||||+++.|+.-+.-.+
T Consensus       122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I  154 (305)
T 2v9p_A          122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV  154 (305)
T ss_dssp             TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred             EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence            345668999999999999999999998764333

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.75  E-value=2.9e-05  Score=61.69  Aligned_cols=27  Identities=30%  Similarity=0.570  Sum_probs=24.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .+..+++.||||+|||++|+.+++.++
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            346799999999999999999999997

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.75  E-value=3.3e-05  Score=57.26  Aligned_cols=27  Identities=22%  Similarity=0.358  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYT   48 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~   48 (196)
                      .-++|.|+|||||||+++.++..++..
T Consensus        74 ~gvll~Gp~GtGKTtl~~~i~~~~~~~  100 (278)
T 1iy2_A           74 KGVLLVGPPGVGKTHLARAVAGEARVP  100 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             CeEEEECCCcChHHHHHHHHHHHcCCC
Confidence            449999999999999999999987643

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.75  E-value=2.3e-05  Score=57.66  Aligned_cols=28  Identities=32%  Similarity=0.540  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+..+++|.||+||||||+++.++..+
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            3455789999999999999999998754

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.74  E-value=2.5e-05  Score=59.32  Aligned_cols=27  Identities=37%  Similarity=0.589  Sum_probs=24.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+++|.|++||||||+++.|+..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999766

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.74  E-value=3.7e-05  Score=58.22  Aligned_cols=38  Identities=24%  Similarity=0.282  Sum_probs=29.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh---C--CcEecHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLR   57 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~--~~~~~~~d~~~   57 (196)
                      .+..++|.|+||+||||+++.+++.+   +  +.+++..++..
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~   78 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ   78 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence            34679999999999999999999977   4  45566666543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.74  E-value=1.5e-05  Score=55.02  Aligned_cols=43  Identities=16%  Similarity=0.139  Sum_probs=21.3

Q ss_pred             CCccccCchhhhhcccCCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252            1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ||-++..+....+......+...|+|.|.+|+||||+.+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A            1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             --------------------CEEEEEEEETTSSHHHHHHHHHT
T ss_pred             CCcccccccccCCccCCCCceeEEEEECCCCCCHHHHHHHHhc
Confidence            3443333333333344445567899999999999999999975

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.73  E-value=1.7e-05  Score=57.45  Aligned_cols=29  Identities=31%  Similarity=0.295  Sum_probs=24.3

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .-..+-+++|.|++||||||+.+.|+.-+
T Consensus        27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            34456899999999999999999998644

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.72  E-value=9.2e-06  Score=55.92  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.|+|++||||||+++.|...+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999998866

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.72  E-value=2.9e-05  Score=59.11  Aligned_cols=30  Identities=20%  Similarity=0.139  Sum_probs=25.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      +..++|.|+||+|||++|+.+++.++..++
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~   84 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSANIK   84 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence            345899999999999999999999876544

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.72  E-value=3.1e-05  Score=62.48  Aligned_cols=31  Identities=29%  Similarity=0.501  Sum_probs=27.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      .+..++|.|+||+||||+|+.+++.++..++
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i  106 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDIL  106 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            3468999999999999999999999986654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.71  E-value=3.4e-05  Score=58.01  Aligned_cols=27  Identities=30%  Similarity=0.662  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+++|.|++||||||+++.|+..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            456899999999999999999999865

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.71  E-value=3.3e-05  Score=60.08  Aligned_cols=31  Identities=19%  Similarity=0.363  Sum_probs=27.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      .+..++|.|+||+|||++|+.+++.++..++
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~  177 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESNATFF  177 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence            3568999999999999999999999986554

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.70  E-value=2.9e-05  Score=55.69  Aligned_cols=26  Identities=15%  Similarity=0.234  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +..++|.|++|+||||+++.+++.++
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45899999999999999999998874

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.68  E-value=3.3e-05  Score=61.22  Aligned_cols=39  Identities=23%  Similarity=0.390  Sum_probs=27.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh-CCcE--ecHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTH--LSAGDLLRA   58 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~-~~~~--~~~~d~~~~   58 (196)
                      .+..++|.||||+|||++|+.+++.+ +..+  ++..++...
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~  207 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK  207 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence            45789999999999999999999998 5443  455455443

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.68  E-value=2.8e-05  Score=54.39  Aligned_cols=24  Identities=38%  Similarity=0.517  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+++|.|++||||||+++.|+..+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhc
Confidence            368999999999999999999876

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.68  E-value=3.8e-05  Score=57.79  Aligned_cols=27  Identities=37%  Similarity=0.787  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+|+|+|++||||||++..|+..+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            456899999999999999999999876

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.68  E-value=2.2e-05  Score=56.48  Aligned_cols=27  Identities=33%  Similarity=0.279  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+++|.|++||||||+++.++.-+
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356789999999999999999998644

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.68  E-value=2.5e-05  Score=55.95  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ....++.|.|++||||||+++.++..+
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999998743

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.67  E-value=1.7e-05  Score=59.91  Aligned_cols=31  Identities=6%  Similarity=0.225  Sum_probs=27.1

Q ss_pred             ccCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        15 ~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ......+..++|.|+||+|||++++.+++.+
T Consensus        39 ~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           39 SLMSSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             HHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3445677899999999999999999999988

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.67  E-value=2.7e-05  Score=55.13  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++|.|++|+||||+++.+++.+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            49999999999999999999876

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.66  E-value=2.5e-05  Score=56.65  Aligned_cols=28  Identities=21%  Similarity=0.445  Sum_probs=23.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.+++|.|++||||||+++.|+.-+
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           28 IPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3456789999999999999999998643

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.65  E-value=3e-05  Score=51.77  Aligned_cols=24  Identities=25%  Similarity=0.474  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .-|+|.|+||+|||++|+.+++..
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            448999999999999999998764

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.65  E-value=6.1e-05  Score=56.20  Aligned_cols=129  Identities=9%  Similarity=0.136  Sum_probs=69.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHcCCc---------chHHHHHHHHcCCCCCHH----
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGSE---------NGTMIQNMIKEGKIVPSE----   83 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~----   83 (196)
                      +..+..|+|.||   ||+|+.+.|.+.+.. ..++.....|.. +.++.         ..+.+...+..+.++.+.    
T Consensus        97 ~~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~p-R~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~g  172 (292)
T 3tvt_A           97 INYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPK-REYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYND  172 (292)
T ss_dssp             CSSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCC-CTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCC-cCCccCCccccccCCHHHHHHHHhcCceEEEEEEcc
Confidence            345567888888   599999999988753 222222222221 11111         123455555555543321    


Q ss_pred             ----HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcC-HHHHHHHHhhccCCCCCCcHHHHHH
Q 029252           84 ----VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRK  158 (196)
Q Consensus        84 ----~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~r~~~~~~~~~~  158 (196)
                          +....+.+.+.  .++.+|+|--   .+....+.. ....| ++||+..| .+++.+|+..|    ..+..+.+.+
T Consensus       173 n~YGT~~~~V~~~~~--~gk~viLdid---~qg~~~lk~-~~~~p-i~IFI~PpS~e~L~~r~~~r----~~e~~~~~~~  241 (292)
T 3tvt_A          173 NLYGTSVASVREVAE--KGKHCILDVS---GNAIKRLQV-AQLYP-VAVFIKPKSVDSVMEMNRRM----TEEQAKKTYE  241 (292)
T ss_dssp             EEEEEEHHHHHHHHH--HTCEEEECCC---THHHHHHHH-TTCCC-EEEEECCSCHHHHHHTCTTS----CTTHHHHHHH
T ss_pred             ceeEEehHHHHHHHH--cCCcEEEecc---chhhhhccc-ccccc-eEEEEECCCHHHHHHHHhCC----CchhHHHHHH
Confidence                11455666665  3788898843   344444444 44445 56777665 56666555433    4455555555


Q ss_pred             HHH
Q 029252          159 RFK  161 (196)
Q Consensus       159 ~~~  161 (196)
                      |+.
T Consensus       242 r~~  244 (292)
T 3tvt_A          242 RAI  244 (292)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.64  E-value=4.3e-05  Score=58.76  Aligned_cols=27  Identities=26%  Similarity=0.538  Sum_probs=24.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      +..++|.|+||+|||++|+.+++.++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            468999999999999999999999863

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.64  E-value=3.1e-05  Score=56.26  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=22.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .. -+++|.|++||||||+.+.++.-+
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence            35 789999999999999999998643

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.64  E-value=4.4e-05  Score=57.30  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..++|.|+||+||||+|+.+++.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            479999999999999999999987

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.64  E-value=2.8e-05  Score=54.01  Aligned_cols=31  Identities=23%  Similarity=0.081  Sum_probs=22.5

Q ss_pred             hcccCCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        13 ~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +......+...|+|.|.+|+||||+.+.+..
T Consensus        14 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             -----CCEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccccCCCCccEEEEECCCCCCHHHHHHHHHc
Confidence            3333344457899999999999999999975

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.63  E-value=4.8e-05  Score=58.45  Aligned_cols=27  Identities=30%  Similarity=0.662  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+++|.|++||||||+++.|+..+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            457899999999999999999999866

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.63  E-value=2.4e-05  Score=54.14  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      +++|.|++||||||+|..|+.. +.
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~   24 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-AP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CS
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CC
Confidence            3789999999999999999977 63

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.63  E-value=3e-05  Score=57.10  Aligned_cols=28  Identities=29%  Similarity=0.298  Sum_probs=23.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+-+++|.|++||||||+.+.|+.-+
T Consensus        29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           29 ARAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3456789999999999999999998644

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=97.62  E-value=2.6e-05  Score=54.18  Aligned_cols=44  Identities=23%  Similarity=0.194  Sum_probs=21.6

Q ss_pred             CCccccCchhhhhcccCCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252            1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ||-+..++.+..+......+...|+|.|.+|+||||+.+.+...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A            1 MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             --------------------CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             CCccccccccccCcccCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34433333333334444456678999999999999999998754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.62  E-value=3.2e-05  Score=56.27  Aligned_cols=28  Identities=18%  Similarity=0.373  Sum_probs=23.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.+++|.|++||||||+.+.|+.-+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3456789999999999999999998643

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.61  E-value=3.1e-05  Score=57.43  Aligned_cols=27  Identities=37%  Similarity=0.519  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++-+++|.|++||||||+++.|+.-+
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            456789999999999999999998644

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.61  E-value=3.5e-05  Score=61.05  Aligned_cols=30  Identities=23%  Similarity=0.247  Sum_probs=26.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ...++|.|+||+||||+++.+++.++..++
T Consensus        50 ~~~vLL~GppGtGKTtlAr~ia~~~~~~f~   79 (447)
T 3pvs_A           50 LHSMILWGPPGTGKTTLAEVIARYANADVE   79 (447)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            356999999999999999999999876544

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.61  E-value=4.8e-05  Score=54.46  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+++|.|++||||||+++.++..+
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999998654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.61  E-value=3.3e-05  Score=57.02  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+-++.|.|++||||||+++.|+.-+
T Consensus        35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           35 ASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            356789999999999999999998643

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.60  E-value=3.4e-05  Score=56.78  Aligned_cols=27  Identities=33%  Similarity=0.343  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+++|.|++||||||+++.|+.-+
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            456789999999999999999998644

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.60  E-value=3.3e-05  Score=54.89  Aligned_cols=25  Identities=36%  Similarity=0.428  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .+.+++|.|++||||||+++.++.-
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3568999999999999999999854

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.60  E-value=4.4e-05  Score=54.22  Aligned_cols=29  Identities=24%  Similarity=0.111  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      -.++.+++|.|+|||||||+++.++..-+
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~   45 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGLLSG   45 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence            34567999999999999999999987333

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.60  E-value=3.3e-05  Score=56.36  Aligned_cols=27  Identities=33%  Similarity=0.484  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+++|.|++||||||+++.|+.-+
T Consensus        33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           33 KQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999997654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.59  E-value=4.3e-05  Score=55.86  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..+.+++|.|++||||||+.+.|+.-
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           27 PKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.59  E-value=3.6e-05  Score=56.92  Aligned_cols=27  Identities=30%  Similarity=0.370  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+++|.|++||||||+++.|+.-+
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998644

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.59  E-value=3.7e-05  Score=56.55  Aligned_cols=28  Identities=25%  Similarity=0.405  Sum_probs=23.7

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.+++|.|++||||||+++.|+.-+
T Consensus        43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           43 IPSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3456789999999999999999998643

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.59  E-value=4.7e-05  Score=56.20  Aligned_cols=26  Identities=31%  Similarity=0.424  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..+-+++|.|++||||||+++.|+.-
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.58  E-value=6.1e-05  Score=60.05  Aligned_cols=28  Identities=32%  Similarity=0.568  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..++.+++|.|++||||||+++.|+..+
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            3467899999999999999999999765

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.58  E-value=3.1e-05  Score=55.25  Aligned_cols=27  Identities=33%  Similarity=0.310  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+++|.|++||||||+++.|+.-+
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            355789999999999999999998644

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.58  E-value=5.9e-05  Score=60.41  Aligned_cols=37  Identities=22%  Similarity=0.461  Sum_probs=29.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDL   55 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~   55 (196)
                      ..+..++|.|+||+|||++|+.+++.++..++  +..++
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l  274 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI  274 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHH
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHh
Confidence            44567999999999999999999999885544  44444

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.58  E-value=3.7e-05  Score=55.45  Aligned_cols=27  Identities=22%  Similarity=0.396  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+++|.|++||||||+.+.|+.-+
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998644

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.58  E-value=3.9e-05  Score=56.28  Aligned_cols=28  Identities=21%  Similarity=0.317  Sum_probs=23.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+-+++|.|++||||||+.+.|+.-+
T Consensus        38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           38 IEEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3456789999999999999999998644

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.58  E-value=6.1e-05  Score=58.02  Aligned_cols=27  Identities=22%  Similarity=0.472  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+..++|.|+||+||||+++.+++.+
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999877

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.58  E-value=0.0013  Score=55.31  Aligned_cols=130  Identities=16%  Similarity=0.234  Sum_probs=74.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHc---CCc-----chHHHHHHHHcCCCCCHH-----
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKS---GSE-----NGTMIQNMIKEGKIVPSE-----   83 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~-----   83 (196)
                      ..++..|+|.||   ||+|+.+.|.+.+. ...++.....|..-.+   +..     ..+.+...+..+.++.+.     
T Consensus       528 ~~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~  604 (721)
T 2xkx_A          528 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSH  604 (721)
T ss_pred             CCCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCc
Confidence            345678999999   39999999998774 2334444444432111   110     245566666666655321     


Q ss_pred             ---HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 029252           84 ---VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF  160 (196)
Q Consensus        84 ---~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~  160 (196)
                         +....+...+.  .++.+|+|..   ......+.. ....| ++||+..|....++++..|  +    +.+.+++|+
T Consensus       605 ~YGt~~~~v~~~~~--~g~~~ildi~---~~~~~~l~~-~~~~p-~~ifi~pps~~~L~~l~~R--~----t~~~~~~rl  671 (721)
T 2xkx_A          605 LYGTSVQSVREVAE--QGKHCILDVS---ANAVRRLQA-AHLHP-IAIFIRPRSLENVLEINKR--I----TEEQARKAF  671 (721)
T ss_pred             cceeeHHHHHHHHH--CCCcEEEeCC---HHHHHHHHh-cccCC-EEEEEeCCcHHHHHHHhcc--C----CHHHHHHHH
Confidence               22555666665  4888899853   233333332 23334 7888887754444457766  2    234567777


Q ss_pred             HHH
Q 029252          161 KVF  163 (196)
Q Consensus       161 ~~~  163 (196)
                      ...
T Consensus       672 ~~a  674 (721)
T 2xkx_A          672 DRA  674 (721)
T ss_pred             HHH
Confidence            665

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.58  E-value=3.6e-05  Score=55.88  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+-+++|.|++||||||+.+.|+.-+
T Consensus        30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998644

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.57  E-value=3.7e-05  Score=56.43  Aligned_cols=27  Identities=33%  Similarity=0.485  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+++|.|++||||||+.+.|+.-+
T Consensus        31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           31 NKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998644

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.56  E-value=7.3e-05  Score=57.71  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+..++|.|+||+||||+++.+++.+
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            446789999999999999999999876

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.56  E-value=8e-05  Score=59.73  Aligned_cols=30  Identities=23%  Similarity=0.437  Sum_probs=25.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      +.-++|.|+|||||||+++.++...+..++
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i   93 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEARVPFI   93 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            455999999999999999999998865443

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.56  E-value=5.1e-05  Score=51.93  Aligned_cols=32  Identities=16%  Similarity=0.296  Sum_probs=25.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~   52 (196)
                      ...-++|.|+||+||||+|..|.++ |+..++.
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lvaD   46 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR-GHQLVCD   46 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEES
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecC
Confidence            3467999999999999999999875 6555543

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.56  E-value=6.3e-05  Score=52.36  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+++++|++||||||++..++.++
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999997777654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.56  E-value=6.5e-05  Score=61.01  Aligned_cols=30  Identities=27%  Similarity=0.513  Sum_probs=26.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~   49 (196)
                      ++..++|.|||||||||+++.++..++...
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~  136 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKF  136 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence            467899999999999999999999887443

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.56  E-value=4.8e-05  Score=57.39  Aligned_cols=29  Identities=28%  Similarity=0.442  Sum_probs=25.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~   49 (196)
                      +..++|.|+||+||||+|+.+++.++..+
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~   66 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELGVNL   66 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHTCCE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            35689999999999999999999887544

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.55  E-value=6.1e-05  Score=56.95  Aligned_cols=32  Identities=22%  Similarity=0.417  Sum_probs=26.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ..+..+++.|+||+||||+++.+++.++..++
T Consensus        46 ~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~   77 (324)
T 3u61_B           46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMM   77 (324)
T ss_dssp             CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEE
T ss_pred             CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEE
Confidence            34567888899999999999999999975554

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.54  E-value=4.5e-05  Score=55.72  Aligned_cols=27  Identities=22%  Similarity=0.389  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+-+++|.|++||||||+.+.|+.-+
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            355789999999999999999997543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.53  E-value=4.8e-05  Score=56.14  Aligned_cols=29  Identities=24%  Similarity=0.385  Sum_probs=24.1

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .-..+-+++|.|++||||||+.+.|+.-+
T Consensus        29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           29 VINEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            33456789999999999999999998643

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.53  E-value=7.6e-05  Score=57.42  Aligned_cols=27  Identities=26%  Similarity=0.567  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+..++|.|++|+||||+++.+++.+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            446789999999999999999999877

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.53  E-value=5e-05  Score=52.97  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...++|.|++||||||+.+.++..
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            367999999999999999999864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.53  E-value=4.5e-05  Score=53.04  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ....|+|.|.+|+||||+.+.+...
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            3467999999999999999999753

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.52  E-value=8e-05  Score=54.70  Aligned_cols=28  Identities=18%  Similarity=0.336  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ++...++|.||||+|||++++.|+..+.
T Consensus       102 ~~~n~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence            3356899999999999999999998654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.52  E-value=5.7e-05  Score=57.99  Aligned_cols=27  Identities=22%  Similarity=0.491  Sum_probs=23.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      -...-++.|.||+||||||+.+.++--
T Consensus        27 i~~Ge~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           27 LDPGEILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHhcC
Confidence            345678999999999999999999863

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.52  E-value=7.1e-05  Score=56.07  Aligned_cols=26  Identities=23%  Similarity=0.419  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++.+++|.|++||||||++..|+..+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999998755

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.52  E-value=4.9e-05  Score=56.47  Aligned_cols=27  Identities=22%  Similarity=0.103  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+-+++|.|++||||||+.+.|+.-+
T Consensus        45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           45 AKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            356789999999999999999998644

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.51  E-value=5.2e-05  Score=55.52  Aligned_cols=27  Identities=30%  Similarity=0.391  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+++|.|++||||||+.+.++.-+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998643

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.50  E-value=7.4e-05  Score=57.80  Aligned_cols=27  Identities=33%  Similarity=0.584  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+++|+|++||||||+++.|+..+
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            345789999999999999999998765

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.50  E-value=5.8e-05  Score=52.95  Aligned_cols=34  Identities=21%  Similarity=0.135  Sum_probs=22.5

Q ss_pred             hhhcccCCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           11 EADATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        11 ~~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...+.++..+...|+|.|.+|+||||+.++|...
T Consensus        14 ~~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           14 LYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             ---------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            3444555556678999999999999999999863

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.50  E-value=6.8e-05  Score=57.60  Aligned_cols=27  Identities=33%  Similarity=0.380  Sum_probs=23.3

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      -..+-++.|.||+||||||+.+.++--
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           26 VKDGEFVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence            345678999999999999999999863

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.50  E-value=4.6e-05  Score=57.86  Aligned_cols=28  Identities=14%  Similarity=0.281  Sum_probs=24.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~   49 (196)
                      .-++|.|+||+|||++++.+++.++..+
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~~~~~   74 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTMDLDF   74 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            3589999999999999999999887543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.50  E-value=7e-05  Score=57.93  Aligned_cols=28  Identities=25%  Similarity=0.300  Sum_probs=23.6

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -...-++.|.||+||||||+.+.|+--+
T Consensus        26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            3456789999999999999999998633

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.49  E-value=7.2e-05  Score=53.96  Aligned_cols=26  Identities=15%  Similarity=0.324  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .++.++.|.|+|||||||+++.++..
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            35679999999999999999999874

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.49  E-value=7.3e-05  Score=57.50  Aligned_cols=27  Identities=33%  Similarity=0.415  Sum_probs=23.3

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      -..+-++.|.|++||||||+.+.|+.-
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           26 IKDGEFMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCEEEEECCCCchHHHHHHHHhcC
Confidence            345678999999999999999999863

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.48  E-value=8.4e-05  Score=55.52  Aligned_cols=29  Identities=24%  Similarity=0.370  Sum_probs=24.7

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .-.++.+++|.|+|||||||+++.++..+
T Consensus        31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           31 GARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34456899999999999999999998754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.48  E-value=8.7e-05  Score=57.03  Aligned_cols=25  Identities=36%  Similarity=0.551  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .-+++|.|++||||||+.+.+...+
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3589999999999999999998765

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.48  E-value=7e-05  Score=51.91  Aligned_cols=25  Identities=16%  Similarity=0.246  Sum_probs=21.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .+...|+|.|.+|+||||+.+.+..
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHc
Confidence            3457899999999999999999975

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.47  E-value=0.0001  Score=56.24  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .++|.|+||+||||+++.+++.++
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999998753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.47  E-value=7.7e-05  Score=57.58  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...-++.|.|++||||||+.+.++--
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcC
Confidence            45678999999999999999999863

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.47  E-value=8.7e-05  Score=51.38  Aligned_cols=29  Identities=17%  Similarity=0.102  Sum_probs=23.1

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ....+...|+|.|.+|+||||+.+++...
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            33445578999999999999999888753

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.47  E-value=8.6e-05  Score=58.42  Aligned_cols=26  Identities=27%  Similarity=0.575  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++.+|+++|++||||||++..|+..+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999766

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.46  E-value=7.5e-05  Score=57.27  Aligned_cols=26  Identities=35%  Similarity=0.355  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...-++.|.|++||||||+.+.|+--
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            35578999999999999999999853

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.45  E-value=6.9e-05  Score=57.78  Aligned_cols=27  Identities=30%  Similarity=0.487  Sum_probs=24.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      ...++|.|++||||||+++.|+..++.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            568999999999999999999988764

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.45  E-value=0.00011  Score=58.61  Aligned_cols=26  Identities=19%  Similarity=0.447  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+..++|.|+||+|||++++.+++.+
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            34567999999999999999999987

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.44  E-value=9.1e-05  Score=56.96  Aligned_cols=28  Identities=25%  Similarity=0.227  Sum_probs=23.6

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+-++.|.|++||||||+.+.|+.-+
T Consensus        51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           51 VPAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            3456789999999999999999997543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.44  E-value=9.9e-05  Score=56.41  Aligned_cols=24  Identities=33%  Similarity=0.796  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +. ++|.|++|+||||+++.++..+
T Consensus        37 ~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           37 PH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             Ce-EEEECCCCCCHHHHHHHHHHHH
Confidence            45 9999999999999999999965

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.43  E-value=0.00013  Score=56.34  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++|.|++|+||||+++.+++.+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999987

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.43  E-value=0.00012  Score=55.08  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=29.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC----C--cEecHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG----Y--THLSAGDLLRAE   59 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~----~--~~~~~~d~~~~~   59 (196)
                      +..++|.|+||+|||+++..++..+.    .  .++...+++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l  196 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV  196 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence            56799999999999999999998653    3  345666665544

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.43  E-value=0.00011  Score=51.82  Aligned_cols=25  Identities=24%  Similarity=0.559  Sum_probs=21.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ++++++++|+||||||++|..+...
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            5678999999999999999886443

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.43  E-value=8.9e-05  Score=57.29  Aligned_cols=26  Identities=31%  Similarity=0.397  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..+-++.|.|++||||||+.+.++--
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcC
Confidence            35678999999999999999999853

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.42  E-value=7.6e-05  Score=55.73  Aligned_cols=27  Identities=22%  Similarity=0.396  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+++|.|++||||||+.+.|+.-+
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            355789999999999999999998644

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.42  E-value=0.00011  Score=57.99  Aligned_cols=26  Identities=42%  Similarity=0.728  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +|.+|+++|++||||||++..|+..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999866

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.42  E-value=0.0011  Score=51.59  Aligned_cols=136  Identities=9%  Similarity=0.064  Sum_probs=73.5

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      +..+..|+|.||+|   +|+.+.|.+.+.-.+.+.   .+.. +.++..+...       .++    ....+...+.  .
T Consensus       229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr~p-R~gE~dG~~Y-------~Fv----~~~~V~~~~~--~  288 (391)
T 3tsz_A          229 AGFLRPVTIFGPIA---DVAREKLAREEPDIYQIA---KSEP-RDAGTDQRSS-------GII----RLHTIKQIID--Q  288 (391)
T ss_dssp             CSSCCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CCCC-CCSSSCCC---------CCC----CHHHHHHHHT--T
T ss_pred             CCCCCEEEEECCCH---HHHHHHHHhhCccccccc---cCCC-CCcccCCccC-------CcC----cHHHHHHHHH--c
Confidence            34667899999998   899999998875434332   1111 1122211111       122    2455666665  5


Q ss_pred             CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCH-HHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~-~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (196)
                      ++.+|+|   ...+....+.. ....| ++||+..|. +++.+| ..|  ... ++++.++++++...    .+...|..
T Consensus       289 Gk~~iLd---Id~qg~~~l~~-~~~~p-~~IFI~PPS~~~L~~~-~~r--~~~-~s~e~~~~~~~~a~----~~e~~~~~  355 (391)
T 3tsz_A          289 DKHALLD---VTPNAVDRLNY-AQWYP-IVVFLNPDSKQGVKTM-RMR--LCP-ESRKSARKLYERSH----KLRKNNHH  355 (391)
T ss_dssp             TCEEEEC---CCHHHHHHHHH-TTCCC-EEEEEECCCHHHHHHH-HHH--HCS-SCCCCHHHHHHHHH----HHHHHHGG
T ss_pred             CCEEEEE---eCHHHHHHHHh-CCCCC-EEEEEeCcCHHHHHHH-Hhc--CCC-CCHHHHHHHHHHHH----HHHHhccc
Confidence            8889999   44455555555 45555 566666654 555554 555  111 22334555544432    22233444


Q ss_pred             cCcEEEEeCC
Q 029252          177 KGKVRKVIFC  186 (196)
Q Consensus       177 ~~~~~~id~~  186 (196)
                      ..+.+++|.+
T Consensus       356 ~fd~vivNd~  365 (391)
T 3tsz_A          356 LFTTTINLNS  365 (391)
T ss_dssp             GCSEEEECCT
T ss_pred             cCcEEEECCC
Confidence            5556666544

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.42  E-value=7.1e-05  Score=55.08  Aligned_cols=24  Identities=38%  Similarity=0.397  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +.+++|.|++||||||+.+.|+.-
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            678999999999999999999854

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.42  E-value=5.8e-05  Score=58.15  Aligned_cols=27  Identities=30%  Similarity=0.428  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ...+++|.|++||||||+++.|...+.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            456899999999999999999987664

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.41  E-value=9e-05  Score=56.51  Aligned_cols=22  Identities=23%  Similarity=0.579  Sum_probs=21.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 029252           24 VFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +++.||||+||||+++.+++.+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999986

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=97.41  E-value=0.00011  Score=52.28  Aligned_cols=40  Identities=15%  Similarity=0.127  Sum_probs=21.7

Q ss_pred             ccCchhhhhcccCCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252            5 VETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .+++...........+...|+|.|.+|+||||+.+++...
T Consensus        11 ~~~~~~q~~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           11 RENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             ----------------CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             hhhhHhhccCCCCccceEEEEEECcCCCCHHHHHHHHhcC
Confidence            3444444333344445678999999999999999999763

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.40  E-value=0.0001  Score=54.46  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..++|.|++||||||+.+.|+...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999765

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.40  E-value=4.9e-05  Score=57.15  Aligned_cols=27  Identities=19%  Similarity=0.330  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+++|.|++||||||+++.|+.-+
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            356789999999999999999997644

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.40  E-value=0.00013  Score=55.62  Aligned_cols=28  Identities=25%  Similarity=0.318  Sum_probs=24.4

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..++.++.|.|+|||||||+.+.|+..+
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            4567899999999999999999998654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.40  E-value=0.00013  Score=52.78  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++.+++|.|+|||||||++..++...
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            55789999999999999988887643

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.40  E-value=6.4e-05  Score=57.55  Aligned_cols=27  Identities=26%  Similarity=0.316  Sum_probs=23.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      -..+-+++|.|++||||||+.+.++--
T Consensus        23 i~~Ge~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           23 VESGEYFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             EcCCCEEEEECCCCccHHHHHHHHHcC
Confidence            345678999999999999999999853

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.40  E-value=0.00013  Score=57.22  Aligned_cols=28  Identities=25%  Similarity=0.413  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .+.-+++|.|++||||||+++.+...++
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            3456899999999999999999998774

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.39  E-value=0.00016  Score=54.77  Aligned_cols=27  Identities=22%  Similarity=0.496  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+|+|+|++||||||++..|+..+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999999866

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.39  E-value=2.3e-05  Score=52.23  Aligned_cols=25  Identities=24%  Similarity=0.194  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .-++|.|+||+|||++|+.+++..+
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CcEEEECCCCccHHHHHHHHHHhCC
Confidence            3488999999999999999987665

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.38  E-value=9.7e-05  Score=50.39  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=22.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .....|+|.|.+|+||||+.+.|...
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            34567999999999999999999764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.37  E-value=0.00011  Score=57.01  Aligned_cols=25  Identities=32%  Similarity=0.375  Sum_probs=22.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...-++.|.||+||||||+.+.|+.
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhC
Confidence            4567899999999999999999985

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.37  E-value=0.00016  Score=51.82  Aligned_cols=26  Identities=15%  Similarity=0.165  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +..+++++|+|||||||++..++.++
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            45799999999999999999888776

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.37  E-value=0.00014  Score=53.95  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +..+++|.|++||||||++..++..+
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999988643

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.36  E-value=0.00014  Score=55.84  Aligned_cols=28  Identities=14%  Similarity=0.186  Sum_probs=24.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .+..++|.|++|+||||+++.+++.++.
T Consensus        37 ~~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           37 IHHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3567899999999999999999998853

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.36  E-value=0.00014  Score=57.58  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=28.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh-----C--CcEecHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLL   56 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~-----~--~~~~~~~d~~   56 (196)
                      +..++|.|+||+||||+++.+++.+     +  +.+++..++.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~  172 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL  172 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence            5679999999999999999999876     3  3455665554

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.36  E-value=0.00011  Score=50.83  Aligned_cols=25  Identities=12%  Similarity=0.181  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ....|+|.|.+|+||||+.+.|...
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            3467999999999999999999753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.35  E-value=0.00016  Score=55.45  Aligned_cols=26  Identities=27%  Similarity=0.250  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...+|+|.|+|||||||+.+.|...+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999998754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.34  E-value=0.00011  Score=50.93  Aligned_cols=25  Identities=20%  Similarity=0.423  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +...|++.|.+|+||||++..|...
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcC
Confidence            4468999999999999999999864

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.34  E-value=0.00019  Score=53.87  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+++.|+||+||||+++.+++.+
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHh
Confidence            39999999999999999999886

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.33  E-value=7.1e-05  Score=57.05  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=21.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhC
Q 029252           24 VFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ++|.|+||+|||++|+.+++.++
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            99999999999999999999876

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.32  E-value=0.00015  Score=50.00  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ++..|+|.|.+|+||||+.+.|..
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456899999999999999999976

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.31  E-value=6.6e-05  Score=57.60  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=23.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      -..+-+++|.|++||||||+.+.++--
T Consensus        28 i~~Ge~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           28 IENGERFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            345678999999999999999999853

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.31  E-value=0.00013  Score=53.60  Aligned_cols=26  Identities=19%  Similarity=0.302  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +..++|.|+||+|||++|+.+++..+
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            35688999999999999999998763

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.30  E-value=0.0002  Score=50.88  Aligned_cols=27  Identities=26%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+...|+|.|.+||||||++..|+..+
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            455789999999999999999999875

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.30  E-value=0.00021  Score=54.90  Aligned_cols=27  Identities=30%  Similarity=0.382  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+..+|+|+|.||+||||++..|+..+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999876

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.29  E-value=0.00016  Score=48.99  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|++|+||||+.+++..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5799999999999999999975

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.29  E-value=0.00021  Score=53.73  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+++.|+||+||||+++.+++.+
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            49999999999999999999886

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.00014  Score=57.87  Aligned_cols=27  Identities=19%  Similarity=0.298  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+++|.|++||||||+++.|+.-+
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            356789999999999999999998744

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.27  E-value=0.00021  Score=54.21  Aligned_cols=33  Identities=12%  Similarity=0.153  Sum_probs=28.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d   54 (196)
                      ..++|.|++|+||||+++.+++..+..+++...
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~   64 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE   64 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence            689999999999999999999988766666543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.27  E-value=0.00018  Score=49.65  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .+.+|+|++||||||+++.|.--++
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHc
Confidence            3889999999999999999976554

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.27  E-value=0.00022  Score=60.26  Aligned_cols=27  Identities=19%  Similarity=0.464  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+..++|.|+||+|||++++.|++.+
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            344568999999999999999999997

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.25  E-value=0.00017  Score=55.30  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=24.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ....++.|.|+|||||||+++.++...
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            356799999999999999999999765

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.24  E-value=0.00017  Score=50.23  Aligned_cols=27  Identities=26%  Similarity=0.201  Sum_probs=21.3

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +......|+|.|.+|+||||+.+.+..
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            344557899999999999999998864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.24  E-value=0.00031  Score=51.31  Aligned_cols=28  Identities=25%  Similarity=0.313  Sum_probs=24.4

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..++.++++.|.+|+||||++..|+..+
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3467889999999999999999999765

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.24  E-value=0.00021  Score=50.01  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..++|.|++||||||+.+.+...
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            56899999999999999999864

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.24  E-value=0.0011  Score=52.71  Aligned_cols=137  Identities=9%  Similarity=0.060  Sum_probs=71.7

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      +..+..|+|.||+|+|   +.++|.+.+.-.+.+.-  .| . +.++..+...       .+    +....++..+.  .
T Consensus       221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~--TR-p-R~gE~dG~~Y-------~F----Ts~~~V~~vl~--~  280 (468)
T 3shw_A          221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQIAK--SE-P-RDAGTDQRSS-------GI----IRLHTIKQIID--Q  280 (468)
T ss_dssp             CSSCCCEEEESTTHHH---HHHHHHHHCTTTEEECC--CB-C------------------CB----CCHHHHHHHHT--T
T ss_pred             CCCCCEEEEECCCHHH---HHHHHHHhCCCceeeec--CC-C-CCcccccccC-------Cc----ccHHHHHHHHH--C
Confidence            4466889999999999   88888887753333221  12 1 1222211100       11    23556666665  5


Q ss_pred             CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhc
Q 029252           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (196)
                      ++.+|+|   ...+....+.. ....| ++||+..|.-..++++.+|..   .++.+.++++++...    .+...|...
T Consensus       281 Gk~~iLd---Id~qg~~~l~~-~~~~p-~~IFI~PPS~e~L~~~~~rl~---~~see~~~r~~~~a~----~~e~~~~~~  348 (468)
T 3shw_A          281 DKHALLD---VTPNAVDRLNY-AQWYP-IVVFLNPDSKQGVKTMRMRLC---PESRKSARKLYERSH----KLRKNNHHL  348 (468)
T ss_dssp             TCEEEEC---CCHHHHHHHHH-TTCCC-EEEEEECSCHHHHHHHHHHHC---TTCCCCHHHHHHHHH----HHHHHHGGG
T ss_pred             CCeEEEE---eCHHHHHHHHh-cCCCC-EEEEEeCcCHHHHHHHHhccC---CCCHHHHHHHHHHHH----HHHHhhhcc
Confidence            8889999   44455555555 44555 577776665444444444411   122334555554432    222334445


Q ss_pred             CcEEEEeCC
Q 029252          178 GKVRKVIFC  186 (196)
Q Consensus       178 ~~~~~id~~  186 (196)
                      .+.+++|.+
T Consensus       349 fD~vIvNdd  357 (468)
T 3shw_A          349 FTTTINLNS  357 (468)
T ss_dssp             CSEEEECBT
T ss_pred             CCEEEECCC
Confidence            556666543

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.24  E-value=0.00019  Score=54.16  Aligned_cols=32  Identities=25%  Similarity=0.277  Sum_probs=24.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC--CcEecH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA   52 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~   52 (196)
                      +..++|.|+||+||||+|..++...+  ..+++.
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            45679999999999999999987533  334444

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.23  E-value=0.00011  Score=51.08  Aligned_cols=26  Identities=12%  Similarity=0.162  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ....|+|.|.+|+||||+.+.+...-
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            44679999999999999999998643

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.23  E-value=0.00023  Score=54.61  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +..++.|.|+|||||||++..++..+
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999998764

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.23  E-value=0.0002  Score=53.82  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=21.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 029252           24 VFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +++.|++|+||||+++.+++.+
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            9999999999999999999886

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.23  E-value=0.00011  Score=55.84  Aligned_cols=26  Identities=42%  Similarity=0.540  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +.+++|.|++||||||+++.|+..+.
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            45799999999999999999987653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.23  E-value=0.00027  Score=49.04  Aligned_cols=28  Identities=11%  Similarity=0.177  Sum_probs=23.3

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +......|+|.|.+|+||||+.+.|...
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3445678999999999999999999753

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.23  E-value=0.00012  Score=51.49  Aligned_cols=28  Identities=14%  Similarity=0.226  Sum_probs=23.8

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .+......++|.|++||||||+.+.|+.
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            4555678899999999999999998864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.22  E-value=0.00018  Score=56.64  Aligned_cols=26  Identities=35%  Similarity=0.556  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+.+|+|+|++||||||++..|+..+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999876

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.22  E-value=0.00021  Score=48.15  Aligned_cols=25  Identities=16%  Similarity=0.227  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ....|+|.|.+||||||+.+.+...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            3467999999999999999999763

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.21  E-value=0.00028  Score=50.27  Aligned_cols=27  Identities=19%  Similarity=0.334  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+...|+|.|.+||||||++..++...
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999999875

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.21  E-value=0.00032  Score=48.75  Aligned_cols=27  Identities=19%  Similarity=0.288  Sum_probs=23.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ......|+|.|.+|+||||+..+|...
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence            344577999999999999999999874

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.21  E-value=0.00037  Score=48.72  Aligned_cols=27  Identities=19%  Similarity=0.156  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+..+++++|++||||||.+..++.++
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            345799999999999999999988877

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.19  E-value=0.00031  Score=48.63  Aligned_cols=26  Identities=15%  Similarity=0.234  Sum_probs=22.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .....|+|.|.+||||||+...|...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34578999999999999999999764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.19  E-value=0.00019  Score=54.35  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .+++|+|++||||||+.+.|...
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            57899999999999999999864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.17  E-value=0.00028  Score=48.12  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +...|+|.|.+|+||||+.+.|...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4467999999999999999999864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.17  E-value=0.00018  Score=49.36  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=21.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .+...|+|.|.+|+||||+...+..
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHc
Confidence            3456799999999999999999974

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.17  E-value=0.00026  Score=48.34  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +..|+|.|.+|+||||+.+.|...
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.17  E-value=0.00029  Score=47.32  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +..|++.|.+|+||||+...+...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            357999999999999999998753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.16  E-value=0.00032  Score=48.50  Aligned_cols=27  Identities=15%  Similarity=0.159  Sum_probs=22.7

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ......|+|.|.+|+||||+.+.+...
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcC
Confidence            344568999999999999999998754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.16  E-value=0.00016  Score=50.44  Aligned_cols=30  Identities=13%  Similarity=0.163  Sum_probs=21.6

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+...|+|.|.+|+||||+.+.+..++
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence            334456789999999999999998876543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.16  E-value=0.00033  Score=48.76  Aligned_cols=28  Identities=14%  Similarity=0.304  Sum_probs=22.2

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...+...|+|.|.+|+||||+.+++...
T Consensus        24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           24 AKSAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             ---CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            3445578999999999999999999864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.16  E-value=0.00037  Score=47.46  Aligned_cols=25  Identities=32%  Similarity=0.472  Sum_probs=21.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .+...|+|.|.+|+||||+.+.+..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3567899999999999999999975

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.15  E-value=0.00031  Score=46.96  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +.|++.|.+|+||||+.+++...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999864

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.14  E-value=0.00036  Score=52.24  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++.++++.|++|+||||++..|+..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56788999999999999999999765

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.13  E-value=0.00046  Score=52.50  Aligned_cols=29  Identities=10%  Similarity=0.165  Sum_probs=25.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      ..+..+++.|++|+||||+++.+++.+..
T Consensus        22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A           22 RGHHALLIQALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             CCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence            34678999999999999999999998863

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.13  E-value=0.00038  Score=49.27  Aligned_cols=27  Identities=15%  Similarity=0.191  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .....|+|.|++|+||||+...|....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345789999999999999999998753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.13  E-value=0.0003  Score=48.70  Aligned_cols=27  Identities=19%  Similarity=0.288  Sum_probs=21.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ......|+|.|.+|+||||+.+++...
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhC
Confidence            344568999999999999999998763

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.13  E-value=0.00031  Score=53.90  Aligned_cols=25  Identities=16%  Similarity=0.292  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...+++|.|+|||||||+.+.|+..
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcc
Confidence            3468999999999999999999753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.12  E-value=0.00029  Score=48.89  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ....|+|.|.+|+||||+.+.|...
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            3467999999999999999999763

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.12  E-value=0.015  Score=43.48  Aligned_cols=96  Identities=13%  Similarity=0.140  Sum_probs=53.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (196)
                      ...+.-|+|.||   ||+|+.+.|.+.+.- .-++..            ....    +..+.+++    ...+...+.  
T Consensus       142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~------------~~r~----i~~~~fis----~~~V~~vl~--  196 (308)
T 3kfv_A          142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAET------------VSRT----DSPSKIIK----LDTVRVIAE--  196 (308)
T ss_dssp             CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCC------------C------------CCC----HHHHHHHHH--
T ss_pred             cCCCCeEEEeCc---cHHHHHHHHHHhCccccccccc------------cccc----ccCCCeec----HHHHHHHHH--
Confidence            334556888999   799999999887742 222211            0000    23445553    455555555  


Q ss_pred             CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcC-HHHHHHHHhhc
Q 029252           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNR  144 (196)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R  144 (196)
                      .++.+|+|   ...+.+..+.. ....| ++||+..| .+++.+| ..|
T Consensus       197 ~Gk~~ILD---Id~QGa~~lk~-~~~~p-i~IFI~PPS~eeL~~r-r~R  239 (308)
T 3kfv_A          197 KDKHALLD---VTPSAIERLNY-VQYYP-IVVFFIPESRPALKAL-RQW  239 (308)
T ss_dssp             TTCEEEEC---CCHHHHHHHHH-TTCCC-EEEEEEESCHHHHHHH-HHH
T ss_pred             CCCcEEEE---ECHHHHHHHHh-cCCCC-EEEEEeCCCHHHHHHH-Hhc
Confidence            58899998   44455555555 45556 55665554 5666665 545

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.12  E-value=0.00025  Score=48.90  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+||||+.+++..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999999975

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.11  E-value=0.0002  Score=57.65  Aligned_cols=26  Identities=27%  Similarity=0.326  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+..++|.|++||||||+++.|+..+
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34569999999999999999998755

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.11  E-value=0.00036  Score=55.99  Aligned_cols=27  Identities=33%  Similarity=0.629  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+|+|+|.+||||||++..|+..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999999765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.11  E-value=0.00032  Score=46.94  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..|++.|.+|+||||+.+.+...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999764

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.11  E-value=0.00037  Score=53.44  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +..++.|.|+|||||||++..++...
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998654

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.11  E-value=0.00016  Score=58.04  Aligned_cols=25  Identities=32%  Similarity=0.481  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .-++|.|+||+|||++|+.+++.++
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CeeEeecCchHHHHHHHHHHHHHHh
Confidence            3589999999999999999998774

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.10  E-value=0.00034  Score=52.53  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...+++|.|++||||||+.+.|. ..
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            34689999999999999999998 54

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.10  E-value=0.00036  Score=46.85  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|++.|.+|+||||+.+.+...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999999753

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.09  E-value=0.00031  Score=54.78  Aligned_cols=24  Identities=17%  Similarity=0.367  Sum_probs=21.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +..++.|.|+|||||||+++.++-
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Confidence            567999999999999999997763

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.09  E-value=0.00031  Score=55.12  Aligned_cols=26  Identities=19%  Similarity=0.373  Sum_probs=21.4

Q ss_pred             CCCcE--EEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTV--VFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~--i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..+.+  ++|.|++||||||+.+.|+..
T Consensus        38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           38 SQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            34455  999999999999999999753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.08  E-value=0.00033  Score=56.80  Aligned_cols=28  Identities=32%  Similarity=0.354  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            4456899999999999999999998644

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.08  E-value=0.00045  Score=46.66  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +...|+|.|.+|+||||+.+.+..
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            356799999999999999999965

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.08  E-value=0.00044  Score=52.83  Aligned_cols=28  Identities=25%  Similarity=0.241  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+..+|++.|+||+||||+++.|+..+
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3456889999999999999999998765

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.08  E-value=0.00036  Score=47.63  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ....|+|.|.+||||||+.+.+...
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3467999999999999999998753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.07  E-value=0.00045  Score=47.20  Aligned_cols=27  Identities=11%  Similarity=0.116  Sum_probs=21.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..+...|+|.|.+|+||||+.+++...
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            345578999999999999999998753

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.07  E-value=0.0004  Score=58.64  Aligned_cols=27  Identities=19%  Similarity=0.325  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTH   49 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~   49 (196)
                      .++|.|+||+|||++|+.+++.++..+
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~  516 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIEL  516 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCE
Confidence            699999999999999999999997543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.07  E-value=0.0004  Score=48.55  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ....|+|.|.+||||||+...+...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4467999999999999999999753

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.07  E-value=0.00036  Score=54.62  Aligned_cols=25  Identities=28%  Similarity=0.251  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .+.++.|.|++||||||+.+.|+..
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCC
Confidence            3458999999999999999999863

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=97.06  E-value=0.0004  Score=48.24  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...|+|.|.+|+||||+.+.|..
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            35699999999999999999864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.06  E-value=0.00041  Score=46.61  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+||||+.+.+..
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5699999999999999999976

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.06  E-value=0.00039  Score=47.19  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...|+|.|.+|+||||+.+++..
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCccHHHHHHHHhc
Confidence            35799999999999999999864

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.05  E-value=0.00034  Score=50.47  Aligned_cols=25  Identities=20%  Similarity=0.427  Sum_probs=21.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .....|+|.|.+|+||||+.+.|..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcC
Confidence            3457899999999999999999875

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=97.05  E-value=0.00032  Score=49.62  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...|+|.|.+|+||||+.+.|..
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHhc
Confidence            46799999999999999999875

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.05  E-value=0.00035  Score=49.21  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ....|+|.|.+|+||||+.+++...
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3467999999999999999999864

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.05  E-value=0.00049  Score=54.23  Aligned_cols=27  Identities=30%  Similarity=0.535  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+|+++|++|+||||++..|+..+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999999765

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.05  E-value=0.00065  Score=53.65  Aligned_cols=31  Identities=19%  Similarity=0.238  Sum_probs=26.5

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .+-.++.++.|.|++||||||+++.|+....
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4445678999999999999999999998764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.04  E-value=0.00041  Score=56.28  Aligned_cols=27  Identities=30%  Similarity=0.439  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+-++.|.|++||||||+++.|+-.+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998644

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.04  E-value=0.00042  Score=48.34  Aligned_cols=26  Identities=12%  Similarity=0.175  Sum_probs=20.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ......|+|.|.+|+||||+.+.+..
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHh
Confidence            44567899999999999999999874

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.04  E-value=0.0005  Score=49.64  Aligned_cols=25  Identities=36%  Similarity=0.566  Sum_probs=21.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .++.+++|.|+||+|||++|..++.
T Consensus        28 ~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           28 PEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3567999999999999999988764

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.04  E-value=0.00038  Score=52.10  Aligned_cols=25  Identities=28%  Similarity=0.624  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +.++++.|++|+||||++..|+..+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999766

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.04  E-value=0.00038  Score=46.96  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...|+|.|.+|+||||+.+.+..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            35699999999999999999975

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.04  E-value=0.00044  Score=47.55  Aligned_cols=26  Identities=19%  Similarity=0.326  Sum_probs=22.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .....|+|.|.+|+||||+.+++...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            44578999999999999999998753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.03  E-value=0.00039  Score=56.93  Aligned_cols=26  Identities=27%  Similarity=0.436  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++..++|.|++||||||+++.|+.-+
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            55789999999999999999998654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.03  E-value=0.00047  Score=46.94  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +...|+|.|.+|+||||+.+++..
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHh
Confidence            346799999999999999999975

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.02  E-value=0.00037  Score=47.58  Aligned_cols=26  Identities=23%  Similarity=0.201  Sum_probs=22.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .+...|+|.|.+|+||||+.+++...
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34467999999999999999999863

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.02  E-value=0.0005  Score=47.10  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +...|+|.|.+|+||||+.+.+...
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3467999999999999999999854

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.01  E-value=0.00044  Score=47.40  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +...|+|.|.+|+||||+.+.|...
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            3467999999999999999999853

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.01  E-value=0.00051  Score=47.94  Aligned_cols=28  Identities=14%  Similarity=0.294  Sum_probs=21.6

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...+...|+|.|.+|+||||+.+.+...
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3445678999999999999999999753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.00  E-value=0.00035  Score=47.56  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|+|.|.+|+||||+.+.+...
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            457999999999999999999753

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.00  E-value=0.0005  Score=52.54  Aligned_cols=26  Identities=12%  Similarity=0.140  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .++.++.|.|+|||||||+|..++..
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45679999999999999999999875

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.00  E-value=0.00036  Score=49.07  Aligned_cols=24  Identities=17%  Similarity=0.162  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ....|+|.|.+|+||||+...|..
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhc
Confidence            346799999999999999999976

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.00  E-value=0.00036  Score=57.15  Aligned_cols=27  Identities=30%  Similarity=0.443  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++..+.|.|++||||||+++.|+.-+
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            355789999999999999999998654

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.00  E-value=0.00055  Score=53.77  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++.+|++.|++||||||++..|+..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999876

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.99  E-value=0.00042  Score=55.25  Aligned_cols=24  Identities=38%  Similarity=0.552  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -+++|.|++||||||+++.|+.-+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCC
Confidence            789999999999999999998755

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.99  E-value=0.00035  Score=52.40  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..+++|.|+|||||||+.+.|+..
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CCeEEEECCCCCcHHHHHHHhccc
Confidence            468999999999999999999743

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.99  E-value=0.00047  Score=51.85  Aligned_cols=30  Identities=20%  Similarity=0.417  Sum_probs=24.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      ...++|.|+||+||||++..|.++ |+..++
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~  173 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR-GHRLVA  173 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT-TCEEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc-CCceec
Confidence            467999999999999999999875 555443

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.00051  Score=56.45  Aligned_cols=28  Identities=21%  Similarity=0.235  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...+.++.|.|++||||||+.+.|+..+
T Consensus       100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            3456899999999999999999998644

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.98  E-value=0.00066  Score=51.25  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=27.5

Q ss_pred             hhhhhcccC-CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252            9 VKEADATVT-VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus         9 ~~~~~~~~~-~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+.++.... -.++.+++|.|+||+||||++..++...
T Consensus        55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            344443332 3456899999999999999999998654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.98  E-value=0.00052  Score=50.56  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|+|.|+|||||||+.+.|...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            367999999999999999999753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.98  E-value=0.00044  Score=46.66  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|+|.|.+|+||||+.+.+...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            357999999999999999999753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.97  E-value=0.00043  Score=47.59  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|+|.|.+|+||||+.+.|...
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999999863

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.97  E-value=0.00047  Score=47.47  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ....|+|.|.+|+||||+.+++...
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3467999999999999999999864

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.97  E-value=0.00061  Score=52.33  Aligned_cols=27  Identities=22%  Similarity=0.257  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+..++.|.|+|||||||+|..++...
T Consensus        61 ~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           61 PMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999998754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.97  E-value=0.0004  Score=47.24  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...|+|.|.+|+||||+.+.+..
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            36799999999999999999975

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.97  E-value=0.00039  Score=57.19  Aligned_cols=25  Identities=28%  Similarity=0.527  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ..++|.|+|||||||+++.++..++
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCC
Confidence            4789999999999999999998774

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.97  E-value=0.00041  Score=46.73  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..|+|.|.+||||||+.+.+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999998753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.96  E-value=0.00049  Score=46.36  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+||||+.+.+..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            5699999999999999999975

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.96  E-value=0.0004  Score=52.25  Aligned_cols=27  Identities=30%  Similarity=0.383  Sum_probs=22.6

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +++++-.|+|+|.||+||||+...|..
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g   32 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLG   32 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhC
Confidence            344557899999999999999999975

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.96  E-value=0.00046  Score=53.68  Aligned_cols=26  Identities=23%  Similarity=0.276  Sum_probs=22.7

Q ss_pred             CCcEEEE--EcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFV--LGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i--~G~~gsGKsTla~~L~~~~   45 (196)
                      .+..++|  .|++|+||||+++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            4567888  9999999999999999875

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.95  E-value=0.00071  Score=51.38  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .+++|.|++|+||||+++.+++..+
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~   55 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELN   55 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcC
Confidence            5899999999999999999998874

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.95  E-value=0.00037  Score=47.72  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~   42 (196)
                      .+...|+|.|.+|+||||+...+.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            566889999999999999998886

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.95  E-value=0.00056  Score=52.34  Aligned_cols=31  Identities=23%  Similarity=0.250  Sum_probs=26.5

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .+-.++.++.|.|++||||||+.+.++....
T Consensus        66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4445678999999999999999999998764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.95  E-value=0.00056  Score=46.00  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=19.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIV   42 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~   42 (196)
                      ..|+|.|.+|+||||+.+++.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            468999999999999999885

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.95  E-value=0.00062  Score=45.56  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +.+.+|.|+.||||||+...+.=.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~   46 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVG   46 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            458899999999999999988643

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.95  E-value=0.00038  Score=59.56  Aligned_cols=26  Identities=19%  Similarity=0.433  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+..++|.|+||+||||+++.+++.+
T Consensus       190 ~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          190 TKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            34557999999999999999999987

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.94  E-value=0.00049  Score=46.99  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|+|.|.+|+||||+.+.+...
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            467999999999999999998753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.94  E-value=0.00057  Score=47.42  Aligned_cols=24  Identities=25%  Similarity=0.242  Sum_probs=20.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +...|++.|.+|+||||+.+++..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            346799999999999999999986

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.92  E-value=0.00061  Score=45.95  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+||||+.+++..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999999863

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.92  E-value=0.00065  Score=51.47  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+.++.|.|+|||||||+|..++...
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            56799999999999999999998753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.92  E-value=0.00061  Score=45.90  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|+|.|.+|+||||+.+.+...
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            357999999999999999999764

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.92  E-value=0.00064  Score=51.04  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +..++|.|+||+|||++|+.+++..
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEECCCCchHHHHHHHHHHhC
Confidence            3558899999999999999999854

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.91  E-value=0.00095  Score=47.76  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...|++.|++|+||||++-.++..+
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l   30 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQ   30 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHH
Confidence            4679999999999999988888765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.91  E-value=0.00039  Score=46.86  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...|+|.|.+|+||||+.+++..
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            35799999999999999999975

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.91  E-value=0.00055  Score=47.19  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...|+|.|.+|+||||+.+.|..
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            46799999999999999999986

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.91  E-value=0.00052  Score=48.09  Aligned_cols=24  Identities=13%  Similarity=0.119  Sum_probs=21.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ....|+|.|.+|+||||+.+++..
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhh
Confidence            346799999999999999999975

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.91  E-value=0.00065  Score=49.62  Aligned_cols=25  Identities=20%  Similarity=0.478  Sum_probs=21.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .....|+|.|.+||||||+..+|..
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhC
Confidence            3457899999999999999999974

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.91  E-value=0.00052  Score=48.20  Aligned_cols=24  Identities=17%  Similarity=0.308  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|+|.|.+|+||||+.+++...
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            467999999999999999998763

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.91  E-value=0.00072  Score=57.07  Aligned_cols=27  Identities=15%  Similarity=0.337  Sum_probs=24.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+..++|.|+||+||||+++.+++.+
T Consensus       205 ~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          205 RRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            355678999999999999999999987

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.90  E-value=0.00051  Score=46.79  Aligned_cols=24  Identities=17%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ....|+|.|.+|+||||+.+.|..
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc
Confidence            346799999999999999998864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.89  E-value=0.00043  Score=48.32  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIV   42 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~   42 (196)
                      ....|+|.|.+|+|||||.+++.
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            34679999999999999999885

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.89  E-value=0.00084  Score=46.64  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=22.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..+...|+|.|.+|+||||+.+.+..
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHh
Confidence            34567899999999999999998853

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.89  E-value=0.00044  Score=56.82  Aligned_cols=27  Identities=30%  Similarity=0.417  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.++.|.|++||||||+++.|+.-+
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            356789999999999999999998644

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.87  E-value=0.00091  Score=46.40  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ....|+|.|.+|+||||+.+.|..
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHc
Confidence            456799999999999999999976

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.87  E-value=0.00046  Score=47.75  Aligned_cols=27  Identities=22%  Similarity=0.064  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ....|+|.|.+|+||||+.+.+...+.
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            346799999999999999988876553

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.87  E-value=0.00066  Score=47.02  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|+|.|.+|+||||+.++|...
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            467999999999999999999863

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.87  E-value=0.00083  Score=46.28  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=22.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .+...|+|.|.+|+||||+.+++..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999999974

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.86  E-value=0.00065  Score=46.51  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...|+|.|.+|+||||+.+.+..
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            35799999999999999999875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.86  E-value=0.00056  Score=55.44  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..-++.|.|++||||||+++.|+.-+
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.86  E-value=0.00071  Score=47.31  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ....|+|.|.+|+||||+.+.|...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3467999999999999999999764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.86  E-value=0.00063  Score=46.38  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ....|+|.|.+|+||||+.+.+...
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3467999999999999999999753

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.85  E-value=0.00055  Score=47.87  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=20.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ....|+|.|.+|+||||+.+.|..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHh
Confidence            346799999999999999999864

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.85  E-value=0.00086  Score=56.62  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+++.|+||+|||++|+.+++.+
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            69999999999999999999986

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.85  E-value=0.00094  Score=53.01  Aligned_cols=28  Identities=21%  Similarity=0.432  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++.+++|.|+||+||||++..++...
T Consensus       200 l~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          200 FQRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             BCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456799999999999999999988754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.85  E-value=0.0009  Score=44.84  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .|+|.|.+|+||||+.+.+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999753

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.84  E-value=0.00079  Score=47.44  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=21.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +...|+|.|.+|+||||+..++...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999864

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.84  E-value=0.0008  Score=46.24  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=21.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .+...|+|.|.+|+||||+.+++..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999999874

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.84  E-value=0.00089  Score=54.71  Aligned_cols=25  Identities=32%  Similarity=0.622  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+++|.|+|||||||++..+...+
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998765

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.84  E-value=0.00063  Score=55.95  Aligned_cols=27  Identities=30%  Similarity=0.412  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+-++.|.|++||||||+++.|+..+
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            456789999999999999999998644

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.83  E-value=0.00075  Score=54.73  Aligned_cols=26  Identities=27%  Similarity=0.243  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+-++.|.|++||||||+++.|+..+
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.83  E-value=0.00084  Score=47.12  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=21.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .+...|+|.|.+|+||||+..++..
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHh
Confidence            3457899999999999999999875

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.83  E-value=0.00074  Score=51.03  Aligned_cols=25  Identities=24%  Similarity=0.154  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +..++.|.|+|||||||+|..++..
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5679999999999999999999864

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.83  E-value=0.00091  Score=47.07  Aligned_cols=27  Identities=19%  Similarity=0.137  Sum_probs=22.6

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ......|+|.|.+|+||||+...+...
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            344567999999999999999999753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.83  E-value=0.00069  Score=54.76  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.5

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANI   41 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L   41 (196)
                      .+..+++|.|++||||||+++.+
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHH
Confidence            35679999999999999999994

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.82  E-value=0.00067  Score=47.06  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +...|+|.|.+|+||||+.+.+...
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcC
Confidence            4468999999999999999999764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.81  E-value=0.00074  Score=47.18  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=21.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .++..|+|.|.+|+||||+.+++..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3456799999999999999999863

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.81  E-value=0.00036  Score=57.09  Aligned_cols=27  Identities=30%  Similarity=0.378  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.++.|.|++||||||+++.|+.-+
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            356789999999999999999987644

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.80  E-value=0.0009  Score=53.17  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++|.|++||||||++..++..+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999877

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=96.80  E-value=0.0014  Score=46.44  Aligned_cols=27  Identities=19%  Similarity=0.142  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+..+.+++|++||||||.+-.++.++
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            346899999999999999998888876

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.80  E-value=0.00081  Score=55.29  Aligned_cols=26  Identities=27%  Similarity=0.243  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+-++.|.|++||||||+++.|+..+
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998643

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.79  E-value=0.00067  Score=46.56  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|+|.|.+||||||+.+.+...
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999999753

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.79  E-value=0.00089  Score=51.53  Aligned_cols=25  Identities=24%  Similarity=0.306  Sum_probs=21.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .+...|+|.|.+||||||+++.+.-
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~i   55 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMRI   55 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHHH
Confidence            3457899999999999999999853

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.78  E-value=0.00025  Score=53.28  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...+++|.|+|||||||+.+.|+.
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcc
Confidence            457899999999999999999964

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.78  E-value=0.001  Score=46.73  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=21.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .....|+|.|.+|+||||+...|..
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            3457899999999999999999975

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.77  E-value=0.00084  Score=47.49  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +...|+|.|.+|+||||+...+..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            346799999999999999999874

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.77  E-value=0.00075  Score=46.80  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|+|.|.+|+||||+.+.+...
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            467999999999999999999753

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.76  E-value=0.00098  Score=49.25  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...|+|.|.|||||||+.++|..
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g   25 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITG   25 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC
Confidence            35799999999999999999985

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.75  E-value=0.00081  Score=57.56  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..++|.|+||+|||++|+.|++.+
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999999987

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.75  E-value=0.00074  Score=49.46  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...|+|.|.|||||||+...|..
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC
Confidence            46799999999999999999975

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.74  E-value=0.00066  Score=50.92  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=21.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ++..|+|.|.||+||||+.+.|..
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g   30 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLG   30 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHC
Confidence            345799999999999999999975

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.74  E-value=0.00086  Score=46.12  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+|+||||+.+++..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999875

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.74  E-value=0.00052  Score=56.25  Aligned_cols=27  Identities=41%  Similarity=0.447  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.++.|.|++||||||+++.|+.-+
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            345789999999999999999997654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.74  E-value=0.00087  Score=46.85  Aligned_cols=24  Identities=13%  Similarity=0.192  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|+|.|.+|+||||+...+...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999999763

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.73  E-value=0.00066  Score=50.90  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=20.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      -...|+|.|++|+||||+.+.|..
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhC
Confidence            345689999999999999999763

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.73  E-value=0.0012  Score=51.29  Aligned_cols=25  Identities=24%  Similarity=0.258  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .++..+.|.|+||+||||+.+.|..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC
Confidence            4567899999999999999999987

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.72  E-value=0.00056  Score=48.53  Aligned_cols=27  Identities=15%  Similarity=0.195  Sum_probs=22.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ......|+|.|.+|+||||+...|...
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            345578999999999999999998754

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.72  E-value=0.0012  Score=47.23  Aligned_cols=25  Identities=16%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .....|+|.|.+|+||||+...|..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3457899999999999999999865

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.71  E-value=0.00084  Score=47.64  Aligned_cols=27  Identities=22%  Similarity=0.400  Sum_probs=21.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHH-HHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCAN-IVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~-L~~~~   45 (196)
                      .....|+|.|.+||||||+.++ +...+
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence            3456799999999999999998 54444

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.70  E-value=0.001  Score=54.61  Aligned_cols=24  Identities=21%  Similarity=0.428  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -++.|.|++||||||+++.|+.-+
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCC
Confidence            468999999999999999998643

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.68  E-value=0.0012  Score=49.78  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++.|.|+|||||||+|..++...
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            78999999999999988876543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.67  E-value=0.0013  Score=53.21  Aligned_cols=26  Identities=27%  Similarity=0.519  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +..+++|.|++||||||+++.++...
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999998654

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.67  E-value=0.0014  Score=50.53  Aligned_cols=26  Identities=23%  Similarity=0.302  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++.++.|.|+|||||||+|..++...
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~   98 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQA   98 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHH
Confidence            55789999999999999999988754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.65  E-value=0.00082  Score=46.55  Aligned_cols=24  Identities=17%  Similarity=0.148  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|+|.|.+|+||||+.+++...
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            367999999999999999999864

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.64  E-value=0.0012  Score=48.35  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .|+|.|.|||||||+...|...
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.64  E-value=0.0014  Score=48.36  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|+|.|.+||||||+...|...
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.63  E-value=0.0014  Score=45.19  Aligned_cols=24  Identities=17%  Similarity=0.441  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|+|.|.+|+||||+.++|...
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            367999999999999999999764

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.63  E-value=0.0016  Score=51.48  Aligned_cols=27  Identities=15%  Similarity=0.225  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+++|.|+||+||||++..++...
T Consensus       198 ~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          198 GPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            456799999999999999999988753

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.62  E-value=0.0014  Score=50.68  Aligned_cols=32  Identities=16%  Similarity=0.261  Sum_probs=26.4

Q ss_pred             cccCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        14 ~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+-.++..+.|+|++|+||||+++.+++..
T Consensus       167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             HHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             eeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            34455567899999999999999999998754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.62  E-value=0.0013  Score=45.80  Aligned_cols=23  Identities=13%  Similarity=0.258  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...|+|.|.+|+||||+...|..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            35799999999999999999875

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.62  E-value=0.0018  Score=49.33  Aligned_cols=28  Identities=25%  Similarity=0.316  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++-+++|.|.||+||||++..++...
T Consensus        43 l~~G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           43 FNKGSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             BCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3456799999999999999999998764

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.61  E-value=0.00093  Score=52.41  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..-|+|.|++||||||+.+.|+..
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTC
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCC
Confidence            345899999999999999999753

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=96.60  E-value=0.0015  Score=53.02  Aligned_cols=24  Identities=25%  Similarity=0.473  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...+|.|+|+.|+||||+|+.+++
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999996

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.60  E-value=0.0015  Score=45.77  Aligned_cols=23  Identities=17%  Similarity=0.343  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...|+|.|.+|+||||+...|..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            36799999999999999999975

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.59  E-value=0.0015  Score=45.31  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..|+|.|.||+||||+..++...
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56999999999999999999753

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.58  E-value=0.0016  Score=45.90  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +.+.+|.|+.||||||+...+.=.+.
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            46889999999999999999875553

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=96.58  E-value=0.0012  Score=49.63  Aligned_cols=31  Identities=16%  Similarity=0.219  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      ....++|.|+||+||||+|..|.+ .|+..++
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~  176 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVG  176 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence            346799999999999999999865 3554443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.57  E-value=0.0014  Score=56.57  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=22.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..+.++.|.|++||||||+++.|+.
T Consensus       459 ~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          459 KRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3567899999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	196
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	2e-32
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	2e-32
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	2e-32
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	3e-32
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	7e-31
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	1e-29
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	2e-29
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	3e-29
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	4e-29
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	3e-27
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	6e-26
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	2e-23
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	2e-14
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	2e-11
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	3e-11
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	5e-11
d1q3ta_	223	c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae	5e-11
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	9e-11
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	2e-09
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	3e-09
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	3e-08
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	4e-07
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	7e-06
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	2e-05
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	3e-05
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	3e-05
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	5e-04
d1uf9a_	191	c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermo	0.002
d1deka_	241	c.37.1.1 (A:) Deoxynucleoside monophosphate kinase	0.003

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  113 bits (283), Expect = 2e-32
 Identities = 78/170 (45%), Positives = 112/170 (65%), Gaps = 5/170 (2%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           +KK  ++FV+GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G
Sbjct: 5   LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKG 64

Query: 78  KIVPSEVTIKLLQKAMEESGN--DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135
           ++VP E  + +L+ AM    +    FLIDG+PR  +    FE     +P  +L+ D   E
Sbjct: 65  QLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKI-GQPTLLLYVDAGPE 123

Query: 136 EMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
            M +R+L R    GR DDN ETI+KR + + +++ PV+ +YE +G VRKV
Sbjct: 124 TMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKV 173

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score =  113 bits (282), Expect = 2e-32
 Identities = 46/161 (28%), Positives = 89/161 (55%), Gaps = 4/161 (2%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PG+GKGTQ   IVE +G  H+S GD+ RA I+ G+E G   ++ + +G +VP E
Sbjct: 3   IVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDE 62

Query: 84  VTIKLLQKAM-EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           VTI ++++ + +   ++ FL+DGFPR      A +     +    +    + +  +  ++
Sbjct: 63  VTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQ-LLADMGRKIEHVLNIQVEKEELI 121

Query: 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
            R      DN +T+  R +V +  + P++ +Y++K  +  +
Sbjct: 122 ARLTAD--DNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNI 160

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score =  113 bits (283), Expect = 2e-32
 Identities = 94/169 (55%), Positives = 120/169 (71%), Gaps = 4/169 (2%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
            KP VVFVLGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+
Sbjct: 4   SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGE 63

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEE 136
           IVPS VT+KLL+ A++ +    FL+DGFPRNEEN  ++E      ++ +FVLFFDC EE 
Sbjct: 64  IVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEV 123

Query: 137 MERRILNRN--QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           M +R+L R    GR DDN+E+I+KRF  F   +  V+ +Y    KV+ +
Sbjct: 124 MTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKII 172

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 3e-32
 Identities = 88/173 (50%), Positives = 117/173 (67%), Gaps = 10/173 (5%)

Query: 21  PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGT-MIQNMIKEGKI 79
           P VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+       +I+  IKEGKI
Sbjct: 1   PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 60

Query: 80  VPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEA--VTKIEPEFVLFFDC 132
           VP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC
Sbjct: 61  VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 120

Query: 133 SEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           + E    R L R  + GR DDN E++ KR + +L+S+ P++  YE  GKV+K+
Sbjct: 121 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKI 173

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  109 bits (272), Expect = 7e-31
 Identities = 48/161 (29%), Positives = 85/161 (52%), Gaps = 4/161 (2%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PG+GKGTQ   IV  +G  H+S GD+ RA +K G+  G   +  +  G +VP E
Sbjct: 3   LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDE 62

Query: 84  VTIKLLQKA-MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           VTI ++++   ++   + FL+DGFPR      A E     +    L +    +  +  ++
Sbjct: 63  VTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALET-MLADIGRKLDYVIHIDVRQDVLM 121

Query: 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
            R    +++   T+  R +V ++   P+V +YE KG +R +
Sbjct: 122 ERLTADDNEA--TVANRLEVNMKQMKPLVDFYEQKGYLRNI 160

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (264), Expect = 1e-29
 Identities = 86/171 (50%), Positives = 123/171 (71%), Gaps = 7/171 (4%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEG 77
            + +V+FVLGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+ G +I+N IKEG
Sbjct: 6   DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEG 65

Query: 78  KIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134
           +IVP E+T+ LL+ A+ +   +   KFLIDGFPR  +   +FE    +E +F+LFFDC E
Sbjct: 66  QIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPE 124

Query: 135 EEMERRILN--RNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           + M  R+L   +  GR DDN+E+I+KRF  F E+S+PV++Y+E K KV +V
Sbjct: 125 DIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRV 175

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  105 bits (263), Expect = 2e-29
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 6/161 (3%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           V +LG PG+GKGTQ   + E  G   +S G+L R  I+ G++ G   +  +  G +VPS+
Sbjct: 3   VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 62

Query: 84  VTIKLLQKA-MEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMER 139
           +T +L+          + F++DG+PR+ E   A   +      + + VL F  SEE +  
Sbjct: 63  LTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE 122

Query: 140 RILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
           R+  R   R DD  + I  R KV+ + + P+++YY  + K 
Sbjct: 123 RLKGRG--RADDTDDVILNRMKVYRDETAPLLEYYRDQLKT 161

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score =  105 bits (261), Expect = 3e-29
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 3/167 (1%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
           K     +LG PG+GKGTQ   + ++F   HL+ GD+LRA + SGSE G  ++  +  GK+
Sbjct: 2   KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 61

Query: 80  VPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
           V  E+ ++L++K +E        +         +A        + +  L         + 
Sbjct: 62  VSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDS 121

Query: 140 RILNRNQGR---EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
            ++ R  GR    DDN + ++ R + +   + P+V+YY  +G    +
Sbjct: 122 LLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAI 168

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score =  104 bits (261), Expect = 4e-29
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 10/164 (6%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
           +     ++G PGSGKGT  + I +HF   HLS+GDLLR  +  G+E G + +  I +GK+
Sbjct: 5   RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64

Query: 80  VPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
           +P +V  +L+   ++      +L+DGFPR      A +   +I  + V+  +   E +++
Sbjct: 65  IPDDVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQI--DTVINLNVPFEVIKQ 122

Query: 140 RILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           R+ +R         ET+ KR K +   + PV++YY  KG +   
Sbjct: 123 RLTDRP--------ETVVKRLKAYEAQTEPVLEYYRKKGVLETF 158

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 99.6 bits (247), Expect = 3e-27
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 6/162 (3%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + +LG P +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E
Sbjct: 3   IILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDE 62

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143
           + I L+++ + +       +         +A       I  ++VL FD  +E +  RI  
Sbjct: 63  LVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRI-- 120

Query: 144 RNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIF 185
                +DD  ET+RKR   + + + P++ YY  + +     +
Sbjct: 121 ----VKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKY 158

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 96.5 bits (239), Expect = 6e-26
 Identities = 49/166 (29%), Positives = 90/166 (54%), Gaps = 11/166 (6%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
            P  V + G P SGKGTQC  I   +   H+SAGDLLRAEI +GSENG   +  +++G++
Sbjct: 2   DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQL 61

Query: 80  VPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137
           VP E+ + ++++ + +    +  +L+DG+PR+     A E   +I P+  +  D  +E +
Sbjct: 62  VPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALE-TLEIRPDTFILLDVPDELL 120

Query: 138 ERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
             R++  +        E ++ R + + ++   ++  Y  +  + KV
Sbjct: 121 VERVVFDDT------EEKVKLRLETYYQNIESLLSTY--ENIIVKV 158

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.6 bits (221), Expect = 2e-23
 Identities = 41/162 (25%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  +
Sbjct: 5   MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDD 64

Query: 84  VTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141
           + + +++  +  +   K  F++DGFPR        + + K E    L      +  +  +
Sbjct: 65  IMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLK-EQGTPLEKAIELKVDDELL 123

Query: 142 LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKV 183
           + R       N + ++KR   +   + P+V +Y+  G    V
Sbjct: 124 VARIT-----NADALKKRLAAYHAQTEPIVDFYKKTGIWAGV 160

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 65.1 bits (157), Expect = 2e-14
 Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 9/145 (6%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP 81
           ++  +G PGSGK T     +    G+ +++  D  ++ +              K+ + + 
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA---HEERDEYKYTKKKEGIV 60

Query: 82  SEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFE--AVTKIEPEFVLFFDCSEEEME 138
           + +     +  +    + K  +I     N E R A+E  A           FD    E+ 
Sbjct: 61  TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELV 120

Query: 139 RRILNRNQGREDDNVETIRKRFKVF 163
           +R   R    +   ++ +R  +K  
Sbjct: 121 KRNSKRG--TKAVPIDVLRSMYKSM 143

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 58.9 bits (141), Expect = 2e-11
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK 75
          V+ + G  G+GKGT C  + E   +  L +G + R    +   +   + +   
Sbjct: 5  VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDA 57

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 57.7 bits (138), Expect = 3e-11
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 11/146 (7%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +  + G  G GK T C  +      +    GD++   +  G         ++       +
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNIT 63

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIE---PEFVLFFDCSEEEMER 139
           ++T+  L         +  ++D     +E  A  + V           +    + EE+ R
Sbjct: 64  DLTVNFLLA------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLR 117

Query: 140 RILNRNQGREDDNVETIRKRFKVFLE 165
           R   R   +++   E   +  + F  
Sbjct: 118 RDALR--KKDEQMGERCLELVEEFES 141

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 56.9 bits (136), Expect = 5e-11
 Identities = 23/172 (13%), Positives = 47/172 (27%), Gaps = 15/172 (8%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENG---TMIQNMI 74
           +  V G PG GK T  A + E           ++ GD + A             M +  +
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 75  KEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-----FVLF 129
           ++ K +  +    + ++A    G     ID              +            +  
Sbjct: 63  EKQKKLQIDAAKGIAEEA-RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFL 121

Query: 130 FDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
            +   + +  R      + R D + E++      F   +             
Sbjct: 122 LEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVK 173

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 57.3 bits (137), Expect = 5e-11
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 1/104 (0%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
           K   + + G   SGK T    I + FG+T+L  G + RA      +N   ++ +     +
Sbjct: 2   KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLAL 61

Query: 80  V-PSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI 122
           +    ++    +   +        I    R  E      A+  I
Sbjct: 62  LDQHPISFGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAI 105

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 56.5 bits (135), Expect = 9e-11
 Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 14/170 (8%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           VV V G PG G  T     +++       Y  +S G ++    K   EN    ++ +++ 
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK--EENLVSDRDQMRKM 60

Query: 78  KIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC---- 132
                +   K+  + + E +      +D        +     +       +         
Sbjct: 61  DPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVE 120

Query: 133 --SEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
              +E + RR+ +  + R+ D   TI +   +   +++       A  K+
Sbjct: 121 TTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKI 170

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 2e-09
 Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 19/138 (13%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G PG GK T    +    G  +++ GDL R E      +      ++ E +     
Sbjct: 7   ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDR----V 62

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143
           V     Q        D    D FP    +              V         +  R+  
Sbjct: 63  VDELDNQMREGGVIVDYHGCDFFPERWFH-------------IVFVLRTDTNVLYERLET 109

Query: 144 RNQGRE--DDNVETIRKR 159
           R    +   DN++    +
Sbjct: 110 RGYNEKKLTDNIQCEIFQ 127

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 51.6 bits (122), Expect = 3e-09
 Identities = 17/149 (11%), Positives = 41/149 (27%), Gaps = 9/149 (6%)

Query: 17  TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 76
           T     +  ++G  GSGK    + +        L    L          +G  + +  ++
Sbjct: 2   TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRK 61

Query: 77  GKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136
             +         +Q+  + S           +        E          ++     + 
Sbjct: 62  PWLQALNDAAFAMQRTNKVSLIV----CSALKKHYRDLLREG---NPNLSFIYLKGDFDV 114

Query: 137 MERRILNRNQGREDDNVETIRKRFKVFLE 165
           +E R+  R         + +  +F+   E
Sbjct: 115 IESRLKAR--KGHFFKTQMLVTQFETLQE 141

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 48.8 bits (115), Expect = 3e-08
 Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 16/138 (11%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           K   + + G PG+GK +    I     G+ HL  G L++        +  +  ++I+E  
Sbjct: 4   KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEE-- 61

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
                   K   + ++              +  +   F    +     V+    S E + 
Sbjct: 62  --------KDEDRLLDFMEPIMVSRGNHVVDYHSSELFP---ERWFHMVVVLHTSTEVLF 110

Query: 139 RRILNRNQGRE--DDNVE 154
            R+  R        +N+E
Sbjct: 111 ERLTKRQYSEAKRAENME 128

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 45.7 bits (107), Expect = 4e-07
 Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 8/133 (6%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS-AGDLLRAEIKSGSENGTMIQNMIKEGK 78
              ++ + G PGSGK T    +    G   +    D L   IK    +G +   + +  +
Sbjct: 3   GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIK----HGRIDPWLPQSHQ 58

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
                + I               ++DG  R +   A         P   +    +  E  
Sbjct: 59  QNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTA---LARPLHYIVLRTTAAEAI 115

Query: 139 RRILNRNQGREDD 151
            R L+R      D
Sbjct: 116 ERCLDRGGDSLSD 128

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 2/131 (1%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAEIKSGSENGTMIQNMIK 75
           V+ PT   + G PGSGK +  + I E        +      +             ++++K
Sbjct: 29  VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVK 88

Query: 76  EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135
                 + +T  ++ +  ++  N      G   +   + A     K     +      + 
Sbjct: 89  HVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKI 148

Query: 136 EMERRILNRNQ 146
                 + R +
Sbjct: 149 NSYLGTIERYE 159

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 19/138 (13%), Positives = 36/138 (26%), Gaps = 7/138 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG-DLLRAEIKSGSENGTMIQNMIKEGK 78
              ++ + GG  +GK      +        L+ G D L   +    ++         +G 
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61

Query: 79  IVPSEVTIKLLQ------KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC 132
           +        L         AM  +G    + D F      +  + +         +   C
Sbjct: 62  VSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRC 121

Query: 133 SEEEMERRILNRNQGRED 150
                E R   R      
Sbjct: 122 DGAVAEGRETARGDRVAG 139

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 24/165 (14%), Positives = 48/165 (29%), Gaps = 10/165 (6%)

Query: 21  PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS----AGDLLRAEIKSGSENGTMIQNMIKE 76
           PT++ ++G P  GK      +  +  +  +          R ++    ++        +E
Sbjct: 2   PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEE 61

Query: 77  GKIVPSEVTIKLLQKAM---EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC- 132
           G  +  +  +  L        E G    + D      E RA      +       F +  
Sbjct: 62  GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121

Query: 133 --SEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 175
               E +   I+    G  D       +  + F+         YE
Sbjct: 122 CVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYE 166

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 13/166 (7%)

Query: 13  DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQ- 71
            +++    P VV  +G PG+GK T     +   GY H++   L   +    S    + Q 
Sbjct: 6   SSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQG 65

Query: 72  -NMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFP-----RNEENRAAFEAVTKIEPE 125
             ++ +          + +Q A +     +             N   R   +       +
Sbjct: 66  KRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSD 125

Query: 126 FVL------FFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE 165
            V+      F   +  E    IL      ++     +++ ++ F E
Sbjct: 126 MVMFSYRKQFEPPTLAEGFLEILEIPFRLQEHLDPALQRLYRQFSE 171

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.0 bits (84), Expect = 5e-04
 Identities = 21/170 (12%), Positives = 44/170 (25%), Gaps = 19/170 (11%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFG------------YTHLSAGDLLRAEIKS---- 62
               V+ + G   SGK T    + +                  +          +     
Sbjct: 20  AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEY 79

Query: 63  ---GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV 119
                +   +   + ++ K            +    S    +L D      E        
Sbjct: 80  YYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE 139

Query: 120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP 169
            +   +FV++ DC  E    R  ++ +      +    K    +LE+  P
Sbjct: 140 WRPFFDFVVYLDCPREIRFARENDQVKQNIQKFINRYWKAEDYYLETEEP 189

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 5/111 (4%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           K P ++ + G  GSGK T  A ++  +GY  L    L         EN       +    
Sbjct: 1   KHPIIIGITGNIGSGKST-VAALLRSWGYPVLDLDAL----AARARENKEEELKRLFPEA 55

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF 129
           +V   +  + L + +         ++     E  R   E ++++E   V  
Sbjct: 56  VVGGRLDRRALARLVFSDPERLKALEAVVHPEVRRLLMEELSRLEAPLVFL 106

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 9/98 (9%), Positives = 27/98 (27%), Gaps = 6/98 (6%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           ++F+ G   SGK T    I+ ++          ++  +           +     +    
Sbjct: 3   LIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFE 62

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
            +          E+  +   ++     E+        +
Sbjct: 63  GIDYD------RETNLNLTKLEVITIMEQAFCYLNGKS 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	196
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	100.0
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.97
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.97
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.97
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.97
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.97
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.97
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.97
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.97
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.96
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.96
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.96
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.79
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.79
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.78
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.73
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.72
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.72
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.7
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.7
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.7
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.69
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.66
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.64
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.63
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.63
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.6
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.6
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	99.6
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.59
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.59
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.57
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.56
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.53
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.48
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.46
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.44
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.44
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.39
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.38
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.35
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.35
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.31
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.31
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	99.27
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	99.24
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.23
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	99.2
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	99.2
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	99.13
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.08
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.08
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	99.06
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.03
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.92
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.62
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	98.6
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.59
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.55
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.48
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	98.46
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.39
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.39
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.38
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.34
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.34
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	98.33
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.33
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.32
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.28
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	98.22
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.18
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.18
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.13
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.12
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.11
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.11
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.1
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.06
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.02
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.99
d1okkd2	207	GTPase domain of the signal recognition particle r	97.98
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.97
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.89
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.88
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.88
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.85
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	97.85
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.84
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.8
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.77
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.73
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.73
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.71
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.71
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.7
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.7
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.67
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.67
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.67
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.66
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.66
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.65
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.64
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.62
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.62
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.6
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.59
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.57
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	97.56
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.55
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.54
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.52
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.51
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.5
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.5
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.5
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.49
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	97.49
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.48
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.48
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	97.46
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.43
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.38
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.38
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.37
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.37
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	97.36
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.36
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.35
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.35
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.35
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.31
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.3
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.29
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.28
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.27
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.26
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.24
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.23
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.22
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.2
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.2
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.2
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.18
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.13
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.13
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.11
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.09
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.07
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.04
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.04
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.03
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	97.03
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.02
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.01
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.01
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.01
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.99
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.98
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.98
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.97
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.94
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.94
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.93
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.92
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.92
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.92
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.91
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.9
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.89
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.89
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.88
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.86
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.86
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.86
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.84
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.84
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.82
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.81
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.81
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.8
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.79
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.79
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.79
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.79
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.79
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.77
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.76
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.75
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.74
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.73
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.72
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.72
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	96.71
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.71
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.7
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.66
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.65
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.63
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.63
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.62
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.61
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.61
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.6
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.6
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.57
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.56
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.56
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.56
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.51
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	96.5
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.49
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.48
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.45
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.43
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.41
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.41
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.41
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.29
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.25
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.25
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.2
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.19
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.14
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	96.04
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.03
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	96.0
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.96
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.93
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.9
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.88
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	95.87
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.86
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.85
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.83
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.76
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.71
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	95.63
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.61
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.51
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.47
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	95.44
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	95.43
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.28
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.23
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	95.2
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.2
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.06
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	95.02
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	95.0
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.83
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.79
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.77
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.76
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	94.73
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	94.72
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	94.69
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.62
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	94.55
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.49
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	94.45
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	94.44
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	94.4
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	94.39
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.29
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	94.0
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	93.87
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.79
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	93.76
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	93.6
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.57
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.12
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	93.07
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.96
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	92.73
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	92.54
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	92.31
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	91.86
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	91.62
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	90.94
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	90.85
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	90.76
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	90.57
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	89.48
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	87.28
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	84.78
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.58
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	80.52

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=3.9e-32  Score=191.86  Aligned_cols=178  Identities=53%  Similarity=0.887  Sum_probs=159.0

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   95 (196)
                      |..++|.+|+|.|||||||||+|+.|++++|+.+++.++++++........+.........+...+.......+......
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDA   80 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhh
Confidence            35678899999999999999999999999999999999999999888888899999999999999998888888887776


Q ss_pred             cCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHH
Q 029252           96 SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVV  171 (196)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~  171 (196)
                      ...+++++||+|.+..+...+...  ....++++|+|++|++++.+|+..|  ...+..+..+.+++|+..|+....+++
T Consensus        81 ~~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~e~~~~Rl~~y~~~~~~~~  160 (194)
T d1qf9a_          81 NQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVI  160 (194)
T ss_dssp             STTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHH
T ss_pred             hhcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            668889999999999998877654  4556889999999999999999888  456777889999999999999999999


Q ss_pred             HHHHhcCcEEEEeCCCCceeEE
Q 029252          172 QYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       172 ~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      ++|...+.++.||++.++++|+
T Consensus       161 ~~y~~~~~~~~Id~~~~ieeV~  182 (194)
T d1qf9a_         161 DHYNKFDKVKIIPANRDVNEVY  182 (194)
T ss_dssp             HHHHHTTCEEEEECSSCHHHHH
T ss_pred             HHHHhCCCEEEEECCCCHHHHH
Confidence            9999888899999999998875

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=2.2e-30  Score=182.79  Aligned_cols=173  Identities=45%  Similarity=0.826  Sum_probs=158.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--   97 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--   97 (196)
                      ++++|+|.|||||||||+|+.|++++|+.+++.+++++.........+......+..+..+++++...++...+....  
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   86 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDT   86 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhcccc
Confidence            568899999999999999999999999999999999999988888888999999999999999999999988886543  


Q ss_pred             CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHHHH
Q 029252           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (196)
                      .+++|+||||.+..++..+.. ....+..+++++++.++..+|...+  ..+|.++..+.+.+|++.|.....+++++|.
T Consensus        87 ~~g~ildg~pr~~~qa~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y~~~~~~~~~~y~  165 (194)
T d3adka_          87 SKGFLIDGYPREVKQGEEFER-KIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYE  165 (194)
T ss_dssp             CSCEEEESCCSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHTHHHHHHHT
T ss_pred             cccceeeeccchhHHHHHHHH-HhCCccchhccccchhhhHhHhhhhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999988 7778899999999999999998887  5677778888899999999999999999999


Q ss_pred             hcCcEEEEeCCCCceeEE
Q 029252          176 AKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       176 ~~~~~~~id~~~~~e~v~  193 (196)
                      ..+.++.||++.++++|+
T Consensus       166 ~~~~~~~Id~~~s~~eV~  183 (194)
T d3adka_         166 KRGIVRKVNAEGSVDDVF  183 (194)
T ss_dssp             TTTCEEEEECCSCHHHHH
T ss_pred             hcCCEEEEECCCCHHHHH
Confidence            888899999999998875

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.4e-30  Score=180.33  Aligned_cols=177  Identities=49%  Similarity=0.899  Sum_probs=153.8

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   95 (196)
                      .+++.++|+|.|||||||||+|+.|++++|+.+++.+|++|..... +...+..+..+...+...++......+...+..
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   83 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISD   83 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHh
Confidence            4556788999999999999999999999999999999999986654 577888899999999888887776666655433


Q ss_pred             c---CCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhH
Q 029252           96 S---GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV  170 (196)
Q Consensus        96 ~---~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~  170 (196)
                      .   ...++++||+|...++...+.. ....++.+++++++++++.+|+..|  ..++.+...+.+.+|+..|+.+..++
T Consensus        84 ~~~~~~~~~vl~g~p~~~~q~~~~~~-~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~~~~l  162 (196)
T d1ukza_          84 NVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPV  162 (196)
T ss_dssp             HHHTTCCEEEEETCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHH
T ss_pred             hhccCCCceeeeccchhHHHHHHHHH-hccccceeeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            2   3678999999999999888888 7788999999999999999999887  55678888999999999999999999


Q ss_pred             HHHHHhcCcEEEEeCCCCceeEEe
Q 029252          171 VQYYEAKGKVRKVIFCSPIFILVI  194 (196)
Q Consensus       171 ~~~~~~~~~~~~id~~~~~e~v~~  194 (196)
                      +++|...+.++.||+++++++|+.
T Consensus       163 ~~~y~~~~~~~~Id~~~s~eeV~~  186 (196)
T d1ukza_         163 IEYFETKSKVVRVRCDRSVEDVYK  186 (196)
T ss_dssp             HHHHHTTTCEEEEECSSCHHHHHH
T ss_pred             HHHHHhcCCEEEEECCCCHHHHHH
Confidence            999998888999999999988753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.97  E-value=9.1e-30  Score=179.04  Aligned_cols=173  Identities=31%  Similarity=0.560  Sum_probs=152.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-C
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-N   98 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~   98 (196)
                      +++.|+|.|||||||||+|+.|++++|+.+++.++++++....++..+..+..++..|..++......++...+.... .
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~~   81 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCK   81 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGT
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhcccccc
Confidence            456777899999999999999999999999999999999888888899999999999999999988888888776544 7


Q ss_pred             CeEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHH
Q 029252           99 DKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (196)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (196)
                      +++|+||+|+...+...+...   ....+.++++++++++.+.+|+..| ....+.+.+.+.+|+..|+....+++++|.
T Consensus        82 ~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r-~~~~d~~~e~i~~R~~~y~~~~~p~~~~y~  160 (190)
T d1ak2a1          82 NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGR-LIHSDDNKKALKIRLEAYHTQTTPLVEYYS  160 (190)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTC-EECCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999988877653   4567788999999999999999998 223456778899999999999999999999


Q ss_pred             hcCcEEEEeCCCCceeEE
Q 029252          176 AKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       176 ~~~~~~~id~~~~~e~v~  193 (196)
                      ..+.++.||+++++++|+
T Consensus       161 ~~~~~~~Id~~~s~eeV~  178 (190)
T d1ak2a1         161 KRGIHSAIDASQTPDVVF  178 (190)
T ss_dssp             HTTCEEEEETTSCHHHHH
T ss_pred             hcCCEEEEECCCCHHHHH
Confidence            888899999999998875

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.97  E-value=1e-29  Score=178.37  Aligned_cols=165  Identities=30%  Similarity=0.558  Sum_probs=148.7

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (196)
                      +.+.+.|+|.|||||||||+|+.|++++|+.+++.+|++++.....+..+......+..+..+++++...++.+.+....
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~   82 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLT   82 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhh
Confidence            45668899999999999999999999999999999999999988888888999999999999999999999999888777


Q ss_pred             CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhc
Q 029252           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (196)
                      ..+||+||||+...+...+..  ...++.+|+|+++.+++.+|+.+|        .+.+.+|++.|.....+++++|.+.
T Consensus        83 ~~~~ildGfPr~~~q~~~l~~--~~~~~~vi~L~v~~~~l~~R~~~r--------~e~~~kr~~~y~~~~~~v~~~Y~~~  152 (189)
T d2ak3a1          83 QYNWLLDGFPRTLPQAEALDR--AYQIDTVINLNVPFEVIKQRLTDR--------PETVVKRLKAYEAQTEPVLEYYRKK  152 (189)
T ss_dssp             TSCEEEESCCCSHHHHHHHHT--TCCCCEEEEEECCHHHHHHHHTGS--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCcccccccchhhHHHHhhh--cCcceEEEEEeccchhhhhhcccc--------hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            889999999999999888765  557889999999999999999877        5788999999999999999999988


Q ss_pred             CcEEEEeCCCCceeEE
Q 029252          178 GKVRKVIFCSPIFILV  193 (196)
Q Consensus       178 ~~~~~id~~~~~e~v~  193 (196)
                      +.++.+|++. .++|+
T Consensus       153 ~~l~~idg~~-~~eV~  167 (189)
T d2ak3a1         153 GVLETFSGTE-TNKIW  167 (189)
T ss_dssp             TCEEEEECSS-HHHHH
T ss_pred             CCEEEECCCC-hHHHH
Confidence            8899999885 45543

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=5.8e-30  Score=178.42  Aligned_cols=165  Identities=35%  Similarity=0.625  Sum_probs=147.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~  100 (196)
                      +.|+|.|||||||||+|+.|++++++.+++.+++++.....+++.+..+..++..+...++.+...++...+.... .++
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~g   80 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccccccc
Confidence            4689999999999999999999999999999999999988888899999999999999999888888877765433 678


Q ss_pred             EEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhc---
Q 029252          101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK---  177 (196)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  177 (196)
                      +|+||+|.+..+...+.+ ....|+++|+|++|++++.+|+..|      +..+.+.+|+..|+....+++++|...   
T Consensus        81 ~i~~g~pr~~~~~~~~~~-~~~~~~~vi~L~~~~~~l~~R~~~~------~~~e~i~~r~~~y~~~~~~v~~~y~~~~~~  153 (179)
T d1e4va1          81 FLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVKD------DQEETVRKRLVEYHQMTAPLIGYYSKEAEA  153 (179)
T ss_dssp             EEEESCCCSHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHTT------CSHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             eeecccccchHHhhhhhh-ccCCceEEEEeccchhhhhhhhccc------ccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999998888 7888999999999999999999876      456889999999999999999998753   


Q ss_pred             --CcEEEEeCCCCceeEE
Q 029252          178 --GKVRKVIFCSPIFILV  193 (196)
Q Consensus       178 --~~~~~id~~~~~e~v~  193 (196)
                        ..++.||+++++++|+
T Consensus       154 ~~~~~~~IDa~~~ieeV~  171 (179)
T d1e4va1         154 GNTKYAKVDGTKPVAEVR  171 (179)
T ss_dssp             TSCEEEEEETTSCHHHHH
T ss_pred             cCCcEEEEECCCCHHHHH
Confidence              3589999999998874

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.6e-29  Score=176.47  Aligned_cols=168  Identities=31%  Similarity=0.606  Sum_probs=150.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~  100 (196)
                      +.|+|.|||||||||+|+.|++++++.+++.+++++.......+.+..+...+..+...+..+...++...+.... ..+
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANG   80 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCcccccc
Confidence            4689999999999999999999999999999999999888888888888999999999999999999988876544 678


Q ss_pred             EEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhc
Q 029252          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (196)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (196)
                      +++||+|....+...+...   ....++++++|+++++++.+|+..|  ++..+..+.+.+|++.|+....++.+.|.. 
T Consensus        81 ~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r--~r~~~~~~~i~~rl~~y~~~~~~l~~~y~~-  157 (181)
T d2cdna1          81 FILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVILNRMKVYRDETAPLLEYYRD-  157 (181)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH--CCTTCSHHHHHHHHHHHHHHTTTHHHHTTT-
T ss_pred             EEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhccc--ccccchhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            9999999999888877553   5567899999999999999999999  888888999999999999999999999964 


Q ss_pred             CcEEEEeCCCCceeEE
Q 029252          178 GKVRKVIFCSPIFILV  193 (196)
Q Consensus       178 ~~~~~id~~~~~e~v~  193 (196)
                       .++.||++.++++|+
T Consensus       158 -~~~~Id~~~s~eeV~  172 (181)
T d2cdna1         158 -QLKTVDAVGTMDEVF  172 (181)
T ss_dssp             -TEEEEECCSCHHHHH
T ss_pred             -CeEEEECCCCHHHHH
Confidence             489999999999875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-29  Score=177.28  Aligned_cols=173  Identities=52%  Similarity=0.913  Sum_probs=150.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHc-CCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES---   96 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---   96 (196)
                      |++|+|.|||||||||+|+.|++++|+.+++.++++|..... .+...+.+...+..+..+++......+...+...   
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            689999999999999999999999999999999999987655 5677788888999999999988777766655332   


Q ss_pred             --CCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhH
Q 029252           97 --GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV  170 (196)
Q Consensus        97 --~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~  170 (196)
                        ...+++++|+|++..+...+...  ....++.+++++++.+++.+|...|  ..+|.++..+.+.++++.|+....++
T Consensus        81 ~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~~~~~~l  160 (194)
T d1teva_          81 NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPI  160 (194)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHHHHHHHH
Confidence              36889999999999988877653  3445678999999999999999999  66788888999999999999999999


Q ss_pred             HHHHHhcCcEEEEeCCCCceeEE
Q 029252          171 VQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       171 ~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      .++|...+.++.||+++++++|+
T Consensus       161 ~~~y~~~~~~~~IDa~~s~eeV~  183 (194)
T d1teva_         161 IDLYEEMGKVKKIDASKSVDEVF  183 (194)
T ss_dssp             HHHHHHTTCEEEEETTSCHHHHH
T ss_pred             HHHHHhcCCEEEEECCCCHHHHH
Confidence            99999888899999999998875

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.5e-29  Score=175.31  Aligned_cols=163  Identities=25%  Similarity=0.533  Sum_probs=145.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--CC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--ND   99 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~   99 (196)
                      +.|+|.|+|||||||+|+.|++++++.+++.+++++......+..+..+..++..+...+.......+...+....  ..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKN   82 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCccccC
Confidence            5688999999999999999999999999999999999888888999999999999999999888888877776543  67


Q ss_pred             eEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252          100 KFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (196)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (196)
                      ++|+||+|.+..+...+...   ....++++|+|+++++++.+|+..|         +.+.+|+..|+....++.++|..
T Consensus        83 g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~---------~~~~~r~~~y~~~~~~v~~~y~~  153 (180)
T d1akya1          83 GFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNA---------DALKKRLAAYHAQTEPIVDFYKK  153 (180)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSH---------HHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             CEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhccccc---------ccccchHHHHHHHHHHHHHHHHh
Confidence            89999999999887765543   5677999999999999999999877         67889999999999999999998


Q ss_pred             cCcEEEEeCCCCceeEE
Q 029252          177 KGKVRKVIFCSPIFILV  193 (196)
Q Consensus       177 ~~~~~~id~~~~~e~v~  193 (196)
                      .+.++.||+++++++|+
T Consensus       154 ~~~~~~Id~~~~~eeV~  170 (180)
T d1akya1         154 TGIWAGVDASQPPATVW  170 (180)
T ss_dssp             HTCEEEEETTSCHHHHH
T ss_pred             cCCEEEEECCCCHHHHH
Confidence            88899999999998875

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.96  E-value=3.1e-28  Score=170.03  Aligned_cols=166  Identities=32%  Similarity=0.593  Sum_probs=146.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~  100 (196)
                      +.|+|.|+|||||||+|+.|++++++.+++.+++++......++.+..+..++..|..+++......+...+.... ..+
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~   80 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDNG   80 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhcccccccc
Confidence            4689999999999999999999999999999999999888888899999999999999999888888888775544 678


Q ss_pred             EEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhc
Q 029252          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (196)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (196)
                      +++||+|.+..+...+.+.   ....+...++++++.+.+.+|+..+      +.++.+.+|++.|+....+++++|...
T Consensus        81 ~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~------~~~e~i~~R~~~y~~~~~~i~~~y~~~  154 (182)
T d1s3ga1          81 FLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTAD------DNPDTVTNRLEVNMNQTAPLLAFYDSK  154 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT------CSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhcc------chhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999888876653   4555678999999999999997644      557889999999999999999999988


Q ss_pred             CcEEEEeCCCCceeEE
Q 029252          178 GKVRKVIFCSPIFILV  193 (196)
Q Consensus       178 ~~~~~id~~~~~e~v~  193 (196)
                      +.++.||+++++++|+
T Consensus       155 ~~~~~Id~~~~~eeV~  170 (182)
T d1s3ga1         155 EVLVNINGQKDIKDVF  170 (182)
T ss_dssp             TCEEEEECSSCHHHHH
T ss_pred             CCEEEEECCCCHHHHH
Confidence            8999999999998875

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.96  E-value=2.4e-28  Score=171.55  Aligned_cols=165  Identities=31%  Similarity=0.614  Sum_probs=140.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--   97 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--   97 (196)
                      .|+.|+|.|||||||||+|+.|++++++.+++.+++++............+...+..+...+.......+........  
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   81 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ   81 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhcccc
Confidence            578899999999999999999999999999999999999888887778888888898988888766655555443222  


Q ss_pred             CCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhc
Q 029252           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (196)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (196)
                      .+++|+|++|...++...+.. ....|+.+|+|+++++++.+|+..|      +..+.+++|+..|+....++.++|.  
T Consensus        82 ~~~~vid~~~~~~~q~~~l~~-~~~~p~~~i~L~~~~e~l~~R~~~~------~~~e~~~~rl~~y~~~~~~l~~~y~--  152 (189)
T d1zaka1          82 ENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVFD------DTEEKVKLRLETYYQNIESLLSTYE--  152 (189)
T ss_dssp             HTCEEEESCCCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTT------CCTTHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             cCcEEeeccchhhHHHhhhhh-cccccchheeechhhhhhhhhcccc------chHHHHHHHHHHHHHHHHHHHHHhC--
Confidence            578999999999999999887 7778999999999999999999766      2346678899999999999988884  


Q ss_pred             CcEEEEeCCCCceeEE
Q 029252          178 GKVRKVIFCSPIFILV  193 (196)
Q Consensus       178 ~~~~~id~~~~~e~v~  193 (196)
                      ..++.||+++++++|+
T Consensus       153 ~~~~~Id~~~~idev~  168 (189)
T d1zaka1         153 NIIVKVQGDATVDAVF  168 (189)
T ss_dssp             CCEEEEECSSCHHHHH
T ss_pred             CCEEEEECCCCHHHHH
Confidence            4689999999998875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=2.7e-27  Score=165.07  Aligned_cols=166  Identities=31%  Similarity=0.595  Sum_probs=145.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~  100 (196)
                      +.|+|.|+|||||||+|+.|++++|+.+++.+++++......+..+..+...+..+..+++......+...+.... ..+
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNG   80 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhhhcC
Confidence            4589999999999999999999999999999999999877788888889999999999999888888877765433 778


Q ss_pred             EEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHHHHHHhc
Q 029252          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (196)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (196)
                      +++++++....+...+...   ....++.+++|+++.+.+.+|+..|      ++++.+.+|++.|+.+..+++++|...
T Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~------~~~e~~~~Rl~~y~~~~~~l~~~y~~~  154 (182)
T d1zina1          81 FLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTAD------DNEATVANRLEVNMKQMKPLVDFYEQK  154 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT------CSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccc------cchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999998876665543   5667889999999999999999866      456889999999999999999999988


Q ss_pred             CcEEEEeCCCCceeEE
Q 029252          178 GKVRKVIFCSPIFILV  193 (196)
Q Consensus       178 ~~~~~id~~~~~e~v~  193 (196)
                      +.++.||+++++++|+
T Consensus       155 ~~~~~Id~~~~~eeV~  170 (182)
T d1zina1         155 GYLRNINGEQDMEKVF  170 (182)
T ss_dssp             TCEEEEECSSCHHHHH
T ss_pred             CCEEEEECCCCHHHHH
Confidence            8899999999998875

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.79  E-value=2.6e-19  Score=122.93  Aligned_cols=154  Identities=18%  Similarity=0.264  Sum_probs=94.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~  100 (196)
                      ..|+|.|+|||||||+++.||+++|+++++.|+++.+..  +....+.+..   .|    +..+.......+.... ...
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~--g~~i~ei~~~---~g----~~~~~~~~~~~l~~~~~~~~   73 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVADVVAA---EG----WPGFRRRESEALQAVATPNR   73 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHHHHHHH---HH----HHHHHHHHHHHHHHHCCSSE
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhh--hhhhhhhhcc---cc----hHHHHHHHHHHHHhhccccc
Confidence            447788999999999999999999999999999887652  2222221111   11    1122333333333222 444


Q ss_pred             EEEec--cCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252          101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (196)
Q Consensus       101 ~iidg--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (196)
                      ++..+  ..........+.. .    ..+|||++|.+++.+|+..|  ...|.........+.+........++   |..
T Consensus        74 ~~~~~~~~~~~~~~~~~l~~-~----~~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~l---Y~~  145 (170)
T d1e6ca_          74 VVATGGGMVLLEQNRQFMRA-H----GTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREAL---YQD  145 (170)
T ss_dssp             EEECCTTGGGSHHHHHHHHH-H----SEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHH---HHH
T ss_pred             eecccccchhhhHHHHhhhc-c----ceeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHH---HHH
Confidence            55443  3344444455554 2    36999999999999999877  34455555555555555544433344   444


Q ss_pred             cCcEEEEeCCCCceeEE
Q 029252          177 KGKVRKVIFCSPIFILV  193 (196)
Q Consensus       177 ~~~~~~id~~~~~e~v~  193 (196)
                      ... ++||++.++++++
T Consensus       146 ~a~-~~Id~~~~~~eiv  161 (170)
T d1e6ca_         146 VAH-YVVDATQPPAAIV  161 (170)
T ss_dssp             HCS-EEEETTSCHHHHH
T ss_pred             cCC-EEEcCCCCHHHHH
Confidence            333 4789888887764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1e-18  Score=119.72  Aligned_cols=152  Identities=14%  Similarity=0.129  Sum_probs=96.4

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH-------HHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-------IKLLQK   91 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~   91 (196)
                      ..+.+++|.|+|||||||+++.|+++++..+++.+++.......          ....+........       ...+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIE----------KMASGEPLNDDDRKPWLQALNDAAFA   73 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHH----------HHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHhh----------hhccCcceehhhhHHHHHHHHHHHHH
Confidence            45688999999999999999999999999999887754332111          1111111111111       111222


Q ss_pred             HHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhcchhHH
Q 029252           92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV  171 (196)
Q Consensus        92 ~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  171 (196)
                      .+.  ....++++...........+.  ....+..++||++|++++.+|+..|  ++.....+.+..+++.+..   +  
T Consensus        74 ~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~l~~~~e~~~~Rl~~R--~~~~~~~~~~~~~~~~~e~---~--  142 (171)
T d1knqa_          74 MQR--TNKVSLIVCSALKKHYRDLLR--EGNPNLSFIYLKGDFDVIESRLKAR--KGHFFKTQMLVTQFETLQE---P--  142 (171)
T ss_dssp             HHH--HCSEEEEECCCCSHHHHHHHH--TTCTTEEEEEEECCHHHHHHHHHTS--TTCCCCHHHHHHHHHHCCC---C--
T ss_pred             HHh--ccCceEeeccchHHHHHHHHH--HhCCCceEEeecCCHHHHHHHHHhC--cCCCccHHHHHhhHHHhhC---C--
Confidence            222  255566655444444444443  4555667999999999999999998  5555566666666555432   1  


Q ss_pred             HHHHhcCcEEEEeCCCCceeEE
Q 029252          172 QYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       172 ~~~~~~~~~~~id~~~~~e~v~  193 (196)
                        +.....+++||+++++|+++
T Consensus       143 --~~~e~~~~~id~~~~~e~v~  162 (171)
T d1knqa_         143 --GADETDVLVVDIDQPLEGVV  162 (171)
T ss_dssp             --CTTCTTEEEEECSSCHHHHH
T ss_pred             --CcccCCEEEEeCCCCHHHHH
Confidence              12334688999999998874

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.78  E-value=4.4e-18  Score=114.36  Aligned_cols=136  Identities=17%  Similarity=0.258  Sum_probs=89.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh-CCcEecHHHHHHHHHHcCCcch----HHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENG----TMIQNMIKEGKIVPSEVTIKLLQKAME   94 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~-~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~   94 (196)
                      |+.+|+|+|+|||||||+|+.|.+.. +..+++.+++.+..........    ......       ...+....+...+.
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~   73 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILY   73 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHH-------HHHHHHHHHHHHHH
Confidence            56789999999999999999987654 6889999887766533322111    000000       01222444445544


Q ss_pred             hcC-CCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029252           95 ESG-NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL  164 (196)
Q Consensus        95 ~~~-~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~  164 (196)
                      ... ...+|+|+..........+.++  .......+|++++|.+++.+|+..|  ++...+.+.+.++++.|.
T Consensus        74 ~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~  144 (152)
T d1ly1a_          74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMR  144 (152)
T ss_dssp             SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC--GGGCCCHHHHHHHHHHHH
T ss_pred             hhccCCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHHH
Confidence            322 5678999877777666555443  2333456899999999999999999  555667777777665554

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.9e-17  Score=115.34  Aligned_cols=157  Identities=14%  Similarity=0.187  Sum_probs=86.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh---CCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHH-----------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------   85 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   85 (196)
                      ++.+|+|+|++||||||+++.|++.|   +..++.....     ....+.++.+...+...........           
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p-----~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~   76 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP-----ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQ   76 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS-----CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC-----CCCcccchhhhhhhhcccccchhhhhhHHHHHHHHH
Confidence            56899999999999999999999987   3433321100     0011222223333222222221111           


Q ss_pred             HHHHHHHHHhcCCCeEEEeccCCC------------HHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252           86 IKLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (196)
Q Consensus        86 ~~~~~~~l~~~~~~~~iidg~~~~------------~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~  153 (196)
                      ...+..++.  .+..+|+|.|+.+            ......+.. ....||++|||++|++++.+|...+  +...++.
T Consensus        77 ~~~i~~~l~--~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~-~~~~PDl~i~Ld~~~e~~~~R~~~~--~~~~E~~  151 (209)
T d1nn5a_          77 VPLIKEKLS--QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV-GLPKPDLVLFLQLQLADAAKRGAFG--HERYENG  151 (209)
T ss_dssp             HHHHHHHHH--TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGT-TSBCCSEEEEEECCHHHHHHC-------CTTCSH
T ss_pred             HHhHHHHhh--cccceeecchhhhhhhhhhhccCccHHHHHHHhc-cCCCCceeeeecccHHHHhhhhccc--ccccccH
Confidence            233444444  4788999975321            111111222 5677999999999999999998766  3334454


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHh-cCcEEEEeCCCCceeEE
Q 029252          154 ETIRKRFKVFLESSLPVVQYYEA-KGKVRKVIFCSPIFILV  193 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~e~v~  193 (196)
                      +.+.+..+.|..    +   +.. ..++++||++.++|+|.
T Consensus       152 ~~~~r~~~~Y~~----l---~~~~~~~~~~IDa~~~~e~V~  185 (209)
T d1nn5a_         152 AFQERALRCFHQ----L---MKDTTLNWKMVDASKSIEAVH  185 (209)
T ss_dssp             HHHHHHHHHHHH----H---TTCTTSCEEEEETTSCHHHHH
T ss_pred             HHHHHHHHHHHH----H---HHhCCCCEEEEECCCCHHHHH
Confidence            444333333332    1   222 23689999999998764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.4e-16  Score=109.09  Aligned_cols=101  Identities=22%  Similarity=0.267  Sum_probs=79.0

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (196)
                      ..+.|.+|+|+|+|||||||+|+.+++.+++.+++.|++....                        .....+...+.  
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~~------------------------~~~~~~~~~l~--   63 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQ------------------------RCVSSCQAALR--   63 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSHH------------------------HHHHHHHHHHH--
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHHH------------------------HHHHHHHHHHH--
Confidence            3456899999999999999999999999999999998753221                        12344555565  


Q ss_pred             CCCeEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           97 GNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+..+|+|+......++..+.++   .+.. ..++++++|.+++.+|...|
T Consensus        64 ~g~~vIiD~t~~~~~~R~~~~~~a~~~~~~-~~~v~l~~~~e~~~~Rn~~R  113 (172)
T d1yj5a2          64 QGKRVVIDNTNPDVPSRARYIQCAKDAGVP-CRCFNFCATIEQARHNNRFR  113 (172)
T ss_dssp             TTCCEEEESCCCSHHHHHHHHHHHHHHTCC-EEEEEECCCHHHHHHHHHHH
T ss_pred             CCCCceeeCcCCCHHHHHHHHHHHHhcCCC-EEEEEeCCCHHHHHHHHHHh
Confidence            47889999988888877776553   3333 35899999999999999999

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=5e-16  Score=109.76  Aligned_cols=163  Identities=13%  Similarity=0.210  Sum_probs=87.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh---CCc--Ee-------cHHHHHHHHHHcCCcc-----hHHHHHHHHcCCCCCH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYT--HL-------SAGDLLRAEIKSGSEN-----GTMIQNMIKEGKIVPS   82 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~---~~~--~~-------~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~   82 (196)
                      ++++|+|.|++||||||+++.|+++|   +..  ++       ..+..++.........     .......+-.  ....
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~   78 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFY--AARV   78 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHH--HHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccchhhhHHHHhccccccccccchHHHHHHHH--HHHH
Confidence            35789999999999999999999987   322  22       1233333332221100     0000000000  0000


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeccCCC------------HHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc-cCC
Q 029252           83 EVTIKLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQG  147 (196)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R-~~~  147 (196)
                      ......+...+.  .+..+|.|.+..+            .+....+...  ....||++|||++|++++.+|+..| ...
T Consensus        79 ~~~~~~i~~~l~--~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~~~~  156 (210)
T d4tmka_          79 QLVETVIKPALA--NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELD  156 (210)
T ss_dssp             HHHHHTHHHHHH--TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHH--cCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhccccc
Confidence            111222333443  4778888964311            1111112111  3578999999999999999999999 212


Q ss_pred             CC-CCcHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          148 RE-DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       148 r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      +. ..+.+.+.+..+.|.       +.+.....+++||+++++|+|.
T Consensus       157 ~~~~~~~~~~~~v~~~y~-------~~~~~~~~~~~IDa~~~~e~v~  196 (210)
T d4tmka_         157 RIEQESFDFFNRTRARYL-------ELAAQDKSIHTIDATQPLEAVM  196 (210)
T ss_dssp             TTTTSCHHHHHHHHHHHH-------HHHHTCTTEEEEETTSCHHHHH
T ss_pred             hhhhccHHHHHHHHHHHH-------HHHhcCCCEEEEECCCCHHHHH
Confidence            22 223333333222332       2233444699999999998763

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.70  E-value=1.1e-16  Score=109.59  Aligned_cols=110  Identities=16%  Similarity=0.235  Sum_probs=68.3

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhC-CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCH-HHHH---HHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-EVTI---KLLQKA   92 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~   92 (196)
                      .++++.|+|+|+|||||||+|+.|+++++ ..+++.+++...........       ...+..... ....   +.+...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~   74 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYD-------TELDTHIIEEKDEDRLLDFMEPI   74 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC-------------CCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhhHH-------HhhcccchHHHHHHHHHHHHHhh
Confidence            35678899999999999999999999997 45666655554431111111       111122222 2222   222222


Q ss_pred             HHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        93 l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      +.  .+..++++++....-        ....++.+|||++|++++.+|+..|
T Consensus        75 i~--~~~~~~~~~~~~~~~--------~~~~~~~vI~L~~~~e~l~~Rl~~R  116 (174)
T d1y63a_          75 MV--SRGNHVVDYHSSELF--------PERWFHMVVVLHTSTEVLFERLTKR  116 (174)
T ss_dssp             HT--SSSEEEEECSCCTTS--------CGGGCSEEEEEECCHHHHHHHHHHT
T ss_pred             hh--hcccccccHHHHHHH--------HHhcCceEEEEECCHHHHHHHHHhC
Confidence            22  367788887654321        1223567999999999999999988

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.70  E-value=7.6e-18  Score=117.19  Aligned_cols=164  Identities=17%  Similarity=0.167  Sum_probs=95.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHH-------HHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE-------VTIKLL   89 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~   89 (196)
                      ++|+|+|+|||||||+++.|+++++     ..+++.++..+............ ...    ...+..       .....+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~   76 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR-DEM----RKLSVEKQKKLQIDAAKGI   76 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH-HHH----TTSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhh-hhc----cccchhhcccCHHHHHHHH
Confidence            4688999999999999999999985     34556677666544332211100 000    111110       011222


Q ss_pred             HHHHHhcCCCeEEEeccCCCHHH--------HHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHHHHHHHH
Q 029252           90 QKAMEESGNDKFLIDGFPRNEEN--------RAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRF  160 (196)
Q Consensus        90 ~~~l~~~~~~~~iidg~~~~~~~--------~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~~~~~~~  160 (196)
                      ...........++++++......        ....   ....|++++||++|++++.+|+..| ...+.....+.+..+.
T Consensus        77 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~r~~~~r~~~~~~~~~~~~  153 (194)
T d1nksa_          77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVI---TEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILET  153 (194)
T ss_dssp             HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHH---HHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHH
T ss_pred             HHHHHHhCCCcEEEEccCchHHHHHHHHhHHHHHH---hhhccccceEEecCHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence            22333334666777754321110        0111   2235889999999999999999988 5566667777777766


Q ss_pred             HHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          161 KVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      ..+.......+..+......++.+++.++++++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~  186 (194)
T d1nksa_         154 INFARYAATASAVLAGSTVKVIVNVEGDPSIAA  186 (194)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHH
T ss_pred             HHHHHhHHHHHHHHhCCCeEEEECCCCCHHHHH
Confidence            666655544444444433344455667887754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.70  E-value=4e-18  Score=118.18  Aligned_cols=165  Identities=14%  Similarity=0.195  Sum_probs=93.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCH---HHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS---EVTIKLLQKAM   93 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l   93 (196)
                      ++|+|.|+|||||||+++.|+++++     ...++.++..+............  ...   .....   ..........+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~   76 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDR--DQM---RKMDPETQKRIQKMAGRKI   76 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSG--GGG---SSCCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhh--hhh---hhhhchhhHHHHHHHHHHH
Confidence            6899999999999999999999884     44566777777654432111000  000   00111   11111111111


Q ss_pred             Hh-cCCCeEEEeccCCCHHHH------HHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHh
Q 029252           94 EE-SGNDKFLIDGFPRNEENR------AAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLE  165 (196)
Q Consensus        94 ~~-~~~~~~iidg~~~~~~~~------~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~r~~~~~~~~~~~~~~~~~  165 (196)
                      .. ..+..+++|+++......      ..+.. ....++.++||+++++++.+|+.+| .+++.......++. ...++.
T Consensus        77 ~~~~~~~~vl~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~~~~~~~~~~~~~~~~~-~~~~~~  154 (190)
T d1khta_          77 AEMAKESPVAVDTHSTVSTPKGYLPGLPSWVL-NELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQ-HQFMNR  154 (190)
T ss_dssp             HHHHTTSCEEEECCSEEEETTEEEESSCHHHH-HHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHH-HHHHHH
T ss_pred             HHHhCCCeEEECCcccchHHHHHHHhhhhhhh-hhccccceeeecCCHHHHHHHHHHhccccCCcccHHHHHH-HHHHHH
Confidence            11 136788899865321110      01111 2345889999999999999999887 45666666555543 334443


Q ss_pred             cchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          166 SSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       166 ~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      .....+..+......++++++.++|+++
T Consensus       155 ~~~~~~~~~~~~~~~~v~~~~~~~ee~~  182 (190)
T d1khta_         155 CAAMSYGVLTGATVKIVQNRNGLLDQAV  182 (190)
T ss_dssp             HHHHHHHHHHCCEEEEEECCTTCHHHHH
T ss_pred             HHHHHHHHhhCCCeEEEECCCCCHHHHH
Confidence            3334344443332344556778888764

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.69  E-value=2.8e-17  Score=112.50  Aligned_cols=119  Identities=16%  Similarity=0.215  Sum_probs=74.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   99 (196)
                      |+++|+|+|+|||||||+|+.|+++++..++...|.++.....+............    .........+...+.  .+.
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~   74 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLA----LTWKNITDLTVNFLL--AQN   74 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHH----HHHHHHHHHHHHHHH--TTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHHH----HHHHHHHHHHHHHHh--cCC
Confidence            45789999999999999999999999877665556565543332211111111000    001122333333343  478


Q ss_pred             eEEEeccCCCHHHHHHHHhh---cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          100 KFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+|+|+..............   ....+..++||.++++++.+|+..|
T Consensus        75 ~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  122 (176)
T d2bdta1          75 DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALR  122 (176)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTS
T ss_pred             CcccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhC
Confidence            88999876655443332221   3334456899999999999999998

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.66  E-value=9.5e-17  Score=108.92  Aligned_cols=107  Identities=14%  Similarity=0.231  Sum_probs=63.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 029252           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI  103 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii  103 (196)
                      |+|.|+|||||||+++.||+++|+.+++.|+++.+..  +.........   .+....... ...+...+.. ....++.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~--g~~i~~~~~~---~g~~~~r~~-e~~v~~~l~~-~~~~v~~   75 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF--NQKVSEIFEQ---KRENFFREQ-EQKMADFFSS-CEKACIA   75 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH--TSCHHHHHHH---HCHHHHHHH-HHHHHHHHTT-CCSEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHH--hhhhhhHHHh---hhhccchhh-hhhhchhhhh-ccccccc
Confidence            7888999999999999999999999999999887653  2222221111   111101111 1223333331 2333333


Q ss_pred             eccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          104 DGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       104 dg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+...  .....+.     ....+|||++|.+++.+|+..|
T Consensus        76 ~~g~~--~~~~~l~-----~~~~vI~L~~s~~~l~~Rl~~~  109 (161)
T d1viaa_          76 TGGGF--VNVSNLE-----KAGFCIYLKADFEYLKKRLDKD  109 (161)
T ss_dssp             CCTTG--GGSTTGG-----GGCEEEEEECCHHHHTTCCCGG
T ss_pred             cccch--hhHHHHH-----hCCeEEEeccchHHHHHHHccc
Confidence            33211  1111112     2457999999999999999776

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=4.9e-16  Score=105.76  Aligned_cols=108  Identities=21%  Similarity=0.294  Sum_probs=65.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 029252           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI  103 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii  103 (196)
                      |++.|+|||||||+++.|++++++.+++.|+++.+..  +....+.+..   .|...........+...+..  ...++.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~--g~~i~~~~~~---~g~~~~r~~e~~~~~~~~~~--~~~vi~   76 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRSIADIFAT---DGEQEFRRIEEDVVRAALAD--HDGVLS   76 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSCHHHHHHH---HCHHHHHHHHHHHHHHHHHH--CCSEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhh--hhhhhhhhhh---hhHHHHHHHHhhhhhhcccc--cccccc
Confidence            5666999999999999999999999999998877652  2222222111   12111122223334444432  334554


Q ss_pred             eccC--CCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          104 DGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       104 dg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .|..  ........+.      ...+|||.++++++.+|+..+
T Consensus        77 ~gg~~~~~~~~~~~l~------~~~~I~L~~~~~~~~~R~~~~  113 (165)
T d2iyva1          77 LGGGAVTSPGVRAALA------GHTVVYLEISAAEGVRRTGGN  113 (165)
T ss_dssp             CCTTGGGSHHHHHHHT------TSCEEEEECCHHHHHHHTTCC
T ss_pred             cccccccccccccccc------ccceeeeeccchhhhhccccc
Confidence            4422  2222222211      235899999999999999765

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.63  E-value=4.4e-15  Score=104.46  Aligned_cols=154  Identities=18%  Similarity=0.116  Sum_probs=90.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCC-----HH-----------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP-----SE-----------   83 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----------   83 (196)
                      |..+|.|+|++||||||+|+.|. .+|+.++++|.+.+..+..+......+..........+     ..           
T Consensus         1 M~~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~   79 (205)
T d1jjva_           1 MTYIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDE   79 (205)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhh
Confidence            45789999999999999999885 68999999999998876655544333333322211111     11           


Q ss_pred             -----------HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCc
Q 029252           84 -----------VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (196)
Q Consensus        84 -----------~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~  152 (196)
                                 .....+...........+++|. |...+. .     ....++.++++++|++++.+|+..|    ...+
T Consensus        80 ~~~~l~~i~hp~v~~~~~~~~~~~~~~~vv~e~-~ll~e~-~-----~~~~~d~ii~v~~~~~~r~~R~~~R----~~~s  148 (205)
T d1jjva_          80 DKLWLNNLLHPAIRERMKQKLAEQTAPYTLFVV-PLLIEN-K-----LTALCDRILVVDVSPQTQLARSAQR----DNNN  148 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCSSEEEEEC-TTTTTT-T-----CGGGCSEEEEEECCHHHHHHHHC---------C
T ss_pred             hhhHhhcccCHHHHHHHHHHHhhccCCeEEEEe-cccccc-c-----hhhhhhheeeecchHHHHHHHHHhc----CCch
Confidence                       1122233333333345566774 333221 1     2234788999999999999999988    3455


Q ss_pred             HHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCcee
Q 029252          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFI  191 (196)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~  191 (196)
                      .+.+..++.....    . +.....+++ +|+++.++++
T Consensus       149 ~e~~~~~~~~Q~~----~-~~k~~~aD~-vI~N~~~l~~  181 (205)
T d1jjva_         149 FEQIQRIMNSQVS----Q-QERLKWADD-VINNDAELAQ  181 (205)
T ss_dssp             HHHHHHHHHHSCC----H-HHHHHHCSE-EEECCSCHHH
T ss_pred             HHHHHHHHHhCCC----H-HHHHHhCCE-EEECCCChHH
Confidence            6777777654321    1 112333444 5777766543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=1.2e-15  Score=106.22  Aligned_cols=155  Identities=17%  Similarity=0.168  Sum_probs=87.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcch---------------HHHHHHHHcCC------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG---------------TMIQNMIKEGK------   78 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~---------------~~~~~~~~~~~------   78 (196)
                      .|++|.|+|++||||||+|+.| +.+|+.+++.|++.+.....+....               ..+...+....      
T Consensus         2 ~p~IIgitG~~gSGKstva~~l-~~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l   80 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALL-RSWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKAL   80 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHH-HHTTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH-HHCCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchhhhhh
Confidence            4789999999999999999999 5689999999998877544322111               11111110000      


Q ss_pred             -CCCHHHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHH
Q 029252           79 -IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR  157 (196)
Q Consensus        79 -~~~~~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~  157 (196)
                       ..........+...........+|+|+.......       ....++.+||+++|++++.+|+.+|    ...+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~vi~e~~~~~~~~-------~~~~~d~vI~v~a~~e~r~~Rl~~R----~~~~~~~~~  149 (191)
T d1uf9a_          81 EAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKG-------WEGRLHGTLLVAAPLEERVRRVMAR----SGLSREEVL  149 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTTT-------CGGGSSEEEEECCCHHHHHHHHHTT----TCCTTHHHH
T ss_pred             hhhhhHHHHHHHHhhhhhcccceEEEEeecccccc-------ccccceeEEEEecchhhHHHHHHhc----ccchHHHHH
Confidence             0000001122222222234667788864322111       2234688999999999999999988    233445555


Q ss_pred             HHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          158 KRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      .++...    .+... ....+++ +|+++.+++++
T Consensus       150 ~~~~~q----~~~~~-~~~~aD~-vI~N~~s~~~l  178 (191)
T d1uf9a_         150 ARERAQ----MPEEE-KRKRATW-VLENTGSLEDL  178 (191)
T ss_dssp             HHHTTS----CCHHH-HHHHCSE-EECCSSHHHHH
T ss_pred             HHHHhC----CCHHH-HHHhCCE-EEECCCCHHHH
Confidence            544321    12222 2233444 57777766543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.60  E-value=4.4e-15  Score=101.26  Aligned_cols=106  Identities=18%  Similarity=0.232  Sum_probs=68.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (196)
                      +.|+|+|+|||||||+|+.|++++++.+++.++.++..........      ...............+.....   ....
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~   75 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDE------EYDCPILDEDRVVDELDNQMR---EGGV   75 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCCS------SSSCCCBCHHHHHHHHHHHHH---HCCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchhH------HhhhhhHHHHHHHHHhhhhhh---cCCc
Confidence            4588999999999999999999999999999998876422111100      011122233333344443333   3344


Q ss_pred             EEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ..++.....-        .......++||+++++++.+|+..|
T Consensus        76 ~~~~~~~~~~--------~~~~~~~~i~l~~~~~~~~~Rl~~r  110 (173)
T d1rkba_          76 IVDYHGCDFF--------PERWFHIVFVLRTDTNVLYERLETR  110 (173)
T ss_dssp             EEECSCCTTS--------CGGGCSEEEEEECCHHHHHHHHHHT
T ss_pred             ccchhHHHHH--------HHhcCCCcceecCCHHHHHHHHHhc
Confidence            5555432211        1123567999999999999999988

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.60  E-value=3.1e-15  Score=105.33  Aligned_cols=69  Identities=17%  Similarity=0.111  Sum_probs=42.2

Q ss_pred             CCCCcEEEEEEcCHHHHHHHHhhc---cCCCCCC---cHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeEE
Q 029252          121 KIEPEFVLFFDCSEEEMERRILNR---NQGREDD---NVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       121 ~~~~~~~i~l~~~~~~~~~R~~~R---~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      ...||++|||++|++++.+|+.+|   ......+   ......+++...+   ..+.+.+ ...++++||+++++++|.
T Consensus       130 ~~~Pd~~i~L~~~~e~~~~Ri~~R~~~~~~~~~d~~e~~~~y~~~~~~~Y---~~~~~~~-~~~~~~vIDa~~~~e~V~  204 (208)
T d1gsia_         130 LPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVY---AELAAQG-WGGRWLVVGADVDPGRLA  204 (208)
T ss_dssp             CCCCSEEEEECCCHHHHHHHHHHHHHHCTTCCCCTTTTCHHHHHHHHHHH---HHHHHHT-TTSEEEEECTTCCHHHHH
T ss_pred             ccCCceeEEecccHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHH---HHHHHhc-CCCCEEEEeCCCCHHHHH
Confidence            567999999999999999999999   1111111   1122223322221   1222211 123689999999998874

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=5.4e-15  Score=103.22  Aligned_cols=34  Identities=26%  Similarity=0.256  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ...+|.+|+|.|+.||||||+++.|+++++...+
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            4457889999999999999999999999975443

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=1e-14  Score=102.80  Aligned_cols=156  Identities=18%  Similarity=0.159  Sum_probs=92.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCHHH---------
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEV---------   84 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---------   84 (196)
                      +|+.+|+|+|++||||||+|+.|. .+|+.++++|.+.+..+..+......+.......     ..+....         
T Consensus         1 ~mk~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~   79 (208)
T d1vhta_           1 SLRYIVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANP   79 (208)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCH
T ss_pred             CCCEEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhH
Confidence            356789999999999999999885 7899999999999887665544333333322111     1111111         


Q ss_pred             -------------HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCC
Q 029252           85 -------------TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (196)
Q Consensus        85 -------------~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~  151 (196)
                                   ....+...........++++. |...+. .     ....++.+|++.+|+++..+|+..|    ...
T Consensus        80 ~~~~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~-~ll~e~-~-----~~~~~~~iI~V~a~~e~r~~R~~~R----~~~  148 (208)
T d1vhta_          80 EEKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVEN-S-----LYKKANRVLVVDVSPETQLKRTMQR----DDV  148 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTT-T-----GGGGCSEEEEEECCHHHHHHHHHHH----HTC
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhcCCcceee-eecccc-c-----ccccCCEEEEEeCCHHHHHHHHHHh----hhh
Confidence                         122222222222344555654 222111 0     2234678999999999999999998    233


Q ss_pred             cHHHHHHHHHHHHhcchhHHHHHHhcCcEEEEeCCCCceeE
Q 029252          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKVIFCSPIFIL  192 (196)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v  192 (196)
                      +.+.+..++....    +...+ ...++ ++|+++.+++++
T Consensus       149 ~~~~~~~~~~~Q~----~~~~k-~~~aD-~vI~N~~~le~l  183 (208)
T d1vhta_         149 TREHVEQILAAQA----TREAR-LAVAD-DVIDNNGAPDAI  183 (208)
T ss_dssp             CHHHHHHHHHHSC----CHHHH-HHHCS-EEEECSSCTTSH
T ss_pred             hHHHHHHHHHhCC----CHHHH-HHhCC-EEEECCCCHHHH
Confidence            4555666554332    12222 22333 467888887754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.59  E-value=1.7e-15  Score=103.66  Aligned_cols=115  Identities=20%  Similarity=0.282  Sum_probs=68.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHHHHHHcCC--cchHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSGS--ENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   95 (196)
                      .+.+|+|.|+|||||||+|+.|+++++..++  +.|+ ++.......  ...........    .........+...+. 
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-   76 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD-LWGYIKHGRIDPWLPQSHQQNR----MIMQIAADVAGRYAK-   76 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH-HHHTCCSSCCCTTSSSHHHHHH----HHHHHHHHHHHHHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHH-HHHHHhcCCcccccchhhhHHH----HHHHHHHHHHHHHHh-
Confidence            4689999999999999999999999987655  4444 444322211  11000000000    000111222333232 


Q ss_pred             cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                       .+..+|+|+..... ....+.  ........+||+++++++.+|+.+|
T Consensus        77 -~~~~vi~~~~~~~~-~~~~~~--~~~~~~~~i~l~~~~e~~~~R~~~R  121 (176)
T d1zp6a1          77 -EGYFVILDGVVRPD-WLPAFT--ALARPLHYIVLRTTAAEAIERCLDR  121 (176)
T ss_dssp             -TSCEEEECSCCCTT-TTHHHH--TTCSCEEEEEEECCHHHHHHHHHTT
T ss_pred             -cCCCeEecccccHH-HHHHHH--hcccccccccCCCCHHHHHHHHHhC
Confidence             47788889865432 222233  2334567899999999999999999

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=3.7e-14  Score=100.22  Aligned_cols=162  Identities=11%  Similarity=0.174  Sum_probs=78.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCC-CCHHHH-----------H
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-VPSEVT-----------I   86 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~   86 (196)
                      +++++|++.|+.||||||+++.|++.|.........     ...+...+..+..++..... ......           .
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~-----p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~   75 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKF-----PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIV   75 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEES-----SCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTH
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEE-----CCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHH
Confidence            367899999999999999999999998532111100     01122233334443322221 111110           1


Q ss_pred             HHHHHHHHhcCCCeEEEeccCCCH-H----------HHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcH
Q 029252           87 KLLQKAMEESGNDKFLIDGFPRNE-E----------NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (196)
Q Consensus        87 ~~~~~~l~~~~~~~~iidg~~~~~-~----------~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~  153 (196)
                      ..+...+.  .+..||.|.|..+. .          ....+..+  ....||++|||++|++...+|...|.. ...++.
T Consensus        76 ~~i~~~l~--~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~-~~~e~~  152 (214)
T d1tmka_          76 DKIKKDLL--EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD-ERYETV  152 (214)
T ss_dssp             HHHHHHHH--TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCS-STTCCH
T ss_pred             HHHHHHHh--cCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccch-hhhhhH
Confidence            22333333  47889999753211 0          01111111  456899999999999999888766611 112333


Q ss_pred             HHHHHHHHHHHhcchhHHHHHH--hcCcEEEEeCC-CCceeE
Q 029252          154 ETIRKRFKVFLESSLPVVQYYE--AKGKVRKVIFC-SPIFIL  192 (196)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~id~~-~~~e~v  192 (196)
                      +.+.+-.+.|.    .+.+.+.  ....+++||++ .++++|
T Consensus       153 ~~~~~v~~~Y~----~l~~~~~~~~~~~~~iID~s~~~~eev  190 (214)
T d1tmka_         153 KFQEKVKQTFM----KLLDKEIRKGDESITIVDVTNKGIQEV  190 (214)
T ss_dssp             HHHHHHHHHHH----HHHHHHHHTTCTTEEEEECTTCCHHHH
T ss_pred             HHHHHHHHHHH----HHHHHhhhhCCCcEEEEECCCCCHHHH
Confidence            33332223333    3332221  23468999976 677765

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.56  E-value=6.3e-15  Score=100.78  Aligned_cols=121  Identities=10%  Similarity=0.084  Sum_probs=64.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe--cHHHHHHHHHHcCCcchHHHHHHHHcC-CCC-CH--HHH----HHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSGSENGTMIQNMIKEG-KIV-PS--EVT----IKLL   89 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~--~~~----~~~~   89 (196)
                      .+++|+|.|+|||||||+|+.|+++++...+  +.|. +...... .............+ ... ..  ...    ...+
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS-LIEAMPL-KMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV   79 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH-HHHHSCG-GGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecch-hhccccc-cccchhHHhhhhcccchhHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999986554  4433 3332111 00000000000000 000 00  011    1112


Q ss_pred             HHHHHhcCCCeEEEeccC-CCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           90 QKAMEESGNDKFLIDGFP-RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        90 ~~~l~~~~~~~~iidg~~-~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .....  ....++++... ........+...........|||++|++++.+|...|
T Consensus        80 ~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R  133 (178)
T d1qhxa_          80 VAMAR--AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETAR  133 (178)
T ss_dssp             HHHHH--TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHT
T ss_pred             HHHHh--hccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhc
Confidence            22222  35566666533 3333333333323445566899999999999999988

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.53  E-value=8.8e-14  Score=98.71  Aligned_cols=41  Identities=34%  Similarity=0.512  Sum_probs=37.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI   60 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~   60 (196)
                      ++.+|+|.|||||||||+|+.||++||+.|++.++++|...
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~a   42 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT   42 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            45788999999999999999999999999999999999753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1e-14  Score=103.07  Aligned_cols=113  Identities=24%  Similarity=0.313  Sum_probs=65.1

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCC----------cEecHHHHHHHHHHcCCcchHHHHHHHHcC-----CCCCHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGY----------THLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEVT   85 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~----------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~   85 (196)
                      |.+|.|.|++||||||+|+.|++.++.          .++++|++++..    . ............     .....+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~l   76 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL----T-SEQKAKALKGQFNFDHPDAFDNELI   76 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC----C-HHHHHHHHTTCSCTTSGGGBCHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccccccc----c-hhhhhhhhhcccccCCcHHHHHHHH
Confidence            688999999999999999999999863          356666653210    0 000000000000     01112223


Q ss_pred             HHHHHHHHHh----------------------cCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhh
Q 029252           86 IKLLQKAMEE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (196)
Q Consensus        86 ~~~~~~~l~~----------------------~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~  143 (196)
                      ...+......                      .....+|++|.+...+.  .+..    .+|+.||+++|.+++.+|...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiveg~~~l~~~--~l~~----~~D~~i~v~~~~~~~~~R~~~  150 (213)
T d1uj2a_          77 LKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD----LFQMKLFVDTDADTRLSRRVL  150 (213)
T ss_dssp             HHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH----HCSEEEEEECCHHHHHHHHHH
T ss_pred             HhhhhhhhcCCcccccccccccccccCceEEecccceEEecchhhhccH--HHHh----hhheeeeecCCHHHHHHHHHH
Confidence            3333332211                      12445778886543221  1122    368999999999999999988


Q ss_pred             c
Q 029252          144 R  144 (196)
Q Consensus       144 R  144 (196)
                      |
T Consensus       151 R  151 (213)
T d1uj2a_         151 R  151 (213)
T ss_dssp             H
T ss_pred             H
Confidence            8

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=3.1e-13  Score=91.06  Aligned_cols=152  Identities=13%  Similarity=0.111  Sum_probs=76.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  101 (196)
                      +.|+|+|+|||||||+|+.|++++++++++.++....................      .............. .....+
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~   75 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEE------GFRDREEKVINELT-EKQGIV   75 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHH------HHHHHHHHHHHHHH-TSSSEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhcccccchhhhhhhh------HHHHHHHHHHHhhc-cccceE
Confidence            35888899999999999999999999999998877665332211111111100      00011111111111 124444


Q ss_pred             EEeccC--CCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhc----cCCCCCCcHHHHHHHHHHHHhcchhHHHHHH
Q 029252          102 LIDGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----NQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (196)
Q Consensus       102 iidg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (196)
                      +.....  ........+..     ....+++.+++.++..|...+    ...........+.+.+...       ...|.
T Consensus        76 ~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~y~  143 (169)
T d1kaga_          76 LATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANER-------NPLYE  143 (169)
T ss_dssp             EECCTTGGGSHHHHHHHHH-----HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHH-------HHHHH
T ss_pred             eeccchhhhhhhhhHHhhh-----cceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHHh-------hhhhh
Confidence            443322  22222222222     347899999999999998776    1122233333333333222       23344


Q ss_pred             hcCcEEEEeCC-CCceeEE
Q 029252          176 AKGKVRKVIFC-SPIFILV  193 (196)
Q Consensus       176 ~~~~~~~id~~-~~~e~v~  193 (196)
                      ....+ +||++ .++++++
T Consensus       144 ~~~d~-~Idt~~~s~ee~v  161 (169)
T d1kaga_         144 EIADV-TIRTDDQSAKVVA  161 (169)
T ss_dssp             HHCSE-EC-----CHHHHH
T ss_pred             ccCCE-EEECCCCCHHHHH
Confidence            43444 57765 4666654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.3e-14  Score=99.80  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=27.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      .|++|+|.|+.||||||+++.|+++++...+
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            3789999999999999999999999874433

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=6e-13  Score=94.19  Aligned_cols=41  Identities=29%  Similarity=0.546  Sum_probs=37.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI   60 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~   60 (196)
                      ++++|+|.|||||||||+|+.|+++||+.+++.+|++|...
T Consensus         2 ~~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~a   42 (225)
T d1ckea_           2 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA   42 (225)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            35699999999999999999999999999999999999753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.39  E-value=1.2e-12  Score=89.97  Aligned_cols=133  Identities=22%  Similarity=0.279  Sum_probs=79.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCc--------chHHHHHHHHcCCCCCH----------
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSE--------NGTMIQNMIKEGKIVPS----------   82 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~----------   82 (196)
                      +.+|+|.|||||||||+++.|.+++....++.....|.. +.+..        ..+.+......+.++.+          
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~-r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~   80 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAP-RPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRS   80 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCC-CTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCC-CccccCCcceeeccchhhhhhhcccccchhhhcccCcccc
Confidence            468999999999999999999998753333322222221 11110        12344444444443221          


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252           83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV  162 (196)
Q Consensus        83 ~~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~  162 (196)
                      ......+...+.  .+..++++..   ......+.. ....+..++++.++.+++.+|+.+|  ++  ++.+.++.|+..
T Consensus        81 g~~~~~~~~~~~--~g~~~i~~~~---~~g~~~l~~-~~~~~~~i~i~~~s~e~L~~RL~~R--g~--~~~e~I~~Rl~~  150 (182)
T d1znwa1          81 GTLAQPVRAAAA--TGVPVLIEVD---LAGARAIKK-TMPEAVTVFLAPPSWQDLQARLIGR--GT--ETADVIQRRLDT  150 (182)
T ss_dssp             EEEHHHHHHHHH--HTCCEEEECC---HHHHHHHHH-HCTTSEEEEEECSCHHHHHHHHHTT--SC--SCHHHHHHHHHH
T ss_pred             ccccchhhhhhh--cCCccccccc---cchhhhhhh-cCcceeEEeeecccHHHHHHHhhhc--Cc--chHHHHHHHHHH
Confidence            111333444443  3677788854   334444444 5555655666677789999999988  44  567888888876


Q ss_pred             HH
Q 029252          163 FL  164 (196)
Q Consensus       163 ~~  164 (196)
                      +.
T Consensus       151 ~~  152 (182)
T d1znwa1         151 AR  152 (182)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=3.2e-13  Score=94.86  Aligned_cols=123  Identities=17%  Similarity=0.243  Sum_probs=68.0

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHH---HHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL---QKA   92 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   92 (196)
                      |.+|+|+|.|||||||+|++|++.++     ...++.|+ ++...............................+   ...
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ-YRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF   80 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccc-eehhhccccccccccccccccchhhHHHHHHHHHHHHHHH
Confidence            68899999999999999999999875     34566654 5555444222110000000000000001111122   222


Q ss_pred             HHhcCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           93 MEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        93 l~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      +....+..+|+|+.......+..+.++  ......+++.+.++.+.+.++...+
T Consensus        81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (213)
T d1bifa1          81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQ  134 (213)
T ss_dssp             HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHH
T ss_pred             HHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHhHHH
Confidence            333347788999987777776665543  2333345666777777766655443

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.35  E-value=3.9e-12  Score=89.18  Aligned_cols=121  Identities=15%  Similarity=0.135  Sum_probs=72.3

Q ss_pred             cccCCCCCcEEEEEcCCCCChHHHHHHHHHHh----C--CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHH
Q 029252           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK   87 (196)
Q Consensus        14 ~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~----~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (196)
                      ..+...++.+|+|+|.|||||||+|+.|++++    +  ..+++. |.++..+..+..+.........        ....
T Consensus        17 ~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg-D~iR~~l~~~l~ys~~~r~~~~--------~r~~   87 (208)
T d1m7ga_          17 TELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG-DNIRFGLNKDLGFSEADRNENI--------RRIA   87 (208)
T ss_dssp             HHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH-HHHTTTTTTTCCSSHHHHHHHH--------HHHH
T ss_pred             HHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcc-hHHHHhhcCCCCCChhHHHHHH--------HHHH
Confidence            34556788999999999999999999999876    2  334555 5455544332222211111000        0011


Q ss_pred             HHHHHHHhcCCCeEEEeccCCCHHHHHHHHhh--------cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--------TKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        88 ~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~--------~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      .+...+. ..+..+|++........+..+.++        ......+.||++||.++|.+|..++
T Consensus        88 ~~a~~~~-~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~  151 (208)
T d1m7ga_          88 EVAKLFA-DSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKG  151 (208)
T ss_dssp             HHHHHHH-HTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTC
T ss_pred             HHHHHHh-ccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhccc
Confidence            1222222 247778888765555555544432        1333456899999999999997655

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.6e-13  Score=95.10  Aligned_cols=70  Identities=14%  Similarity=0.057  Sum_probs=41.5

Q ss_pred             CCCcEEEEEEcCHHHHHHHHhhccCCCC---CCcHHHHHHHHHHHH---hcchh-HHHHHHhcCcEEEEeCCCCceeEE
Q 029252          122 IEPEFVLFFDCSEEEMERRILNRNQGRE---DDNVETIRKRFKVFL---ESSLP-VVQYYEAKGKVRKVIFCSPIFILV  193 (196)
Q Consensus       122 ~~~~~~i~l~~~~~~~~~R~~~R~~~r~---~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~id~~~~~e~v~  193 (196)
                      ..||++|||++|++++.+|+.+|  ++.   ..+.+.+..--+.|.   ..... ....+....++++||++++++++.
T Consensus       151 ~~Pdl~i~Ld~~pe~~~~Ri~~r--~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~~~ie~v~  227 (241)
T d1p5zb_         151 LELDGIIYLQATPETCLHRIYLR--GRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKY  227 (241)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHH
T ss_pred             CCCceeeeeccCHHHHHHHHHhh--cchhhhcCCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECCCCHHHHH
Confidence            47999999999999999999988  332   223333222211121   11000 001112334789999999888653

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=2.5e-12  Score=88.71  Aligned_cols=131  Identities=18%  Similarity=0.330  Sum_probs=78.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHcCC--------cchHHHHHHHHcCCCCCHH--------HHH
Q 029252           24 VFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGS--------ENGTMIQNMIKEGKIVPSE--------VTI   86 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~--------~~~   86 (196)
                      |+|+|||||||||+++.|++++.. ..+......|.. ..++        -..+.+..++..+.++.+.        ...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~-r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~   82 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP-RAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCC-CTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCC-CCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecch
Confidence            899999999999999999998742 111111111110 0010        1124455555555543221        114


Q ss_pred             HHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029252           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL  164 (196)
Q Consensus        87 ~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~  164 (196)
                      ..+...+.  .+..+|++..+.   ....+.......+..++++..+.+++.+|+..|  ++  ++.+.+..|+..+.
T Consensus        83 ~~i~~~~~--~g~~~i~~~~~~---~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~R--g~--~~~~~I~~Rl~~~~  151 (186)
T d1gkya_          83 ASVKQVSK--SGKTCILDIDMQ---GVKSVKAIPELNARFLFIAPPSVEDLKKRLEGR--GT--ETEESINKRLSAAQ  151 (186)
T ss_dssp             HHHHHHHH--HTSEEEEECCHH---HHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHH--SC--SCHHHHHHHHHHHH
T ss_pred             hhHHHHhc--CCCeEEecchHH---HHHHHHHhhcccceEEEecCCcHHHHHHHHHhh--cc--chhHHHHHHHHHHH
Confidence            44555454  377888886543   333333312334556778888999999999999  44  56678888887665

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=6.9e-12  Score=87.65  Aligned_cols=134  Identities=17%  Similarity=0.241  Sum_probs=84.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCC--cEecHHHHHHHHHHcCCc--------chHHHHHHHHcCCCCCHHH------
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSE--------NGTMIQNMIKEGKIVPSEV------   84 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~--~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~------   84 (196)
                      +++|+|+|||||||||+.+.|.+.+..  ..++.....|.. +.++.        ..+.+..++..|.++.+..      
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~-R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~Y   80 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP-RPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY   80 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC-CTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCC-CccccccccceeecHHHHHHHhhhhhheeEEEECCcee
Confidence            478999999999999999999998642  222222222221 11111        1356667777666653321      


Q ss_pred             --HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 029252           85 --TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV  162 (196)
Q Consensus        85 --~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~  162 (196)
                        ....+...+.  .+..+|+|..   .+....+.. ....+-.++++..+.+++.+|+..|    ..++.+.+..|+..
T Consensus        81 Gt~~~~v~~~~~--~g~~~ildid---~~g~~~lk~-~~~~~~~ifi~pps~~~l~~RL~~R----g~~~~~~i~~Rl~~  150 (205)
T d1s96a_          81 GTSREAIEQVLA--TGVDVFLDID---WQGAQQIRQ-KMPHARSIFILPPSKIELDRRLRGR----GQDSEEVIAKRMAQ  150 (205)
T ss_dssp             EEEHHHHHHHHT--TTCEEEEECC---HHHHHHHHH-HCTTCEEEEEECSSHHHHHHHHHTT----SCSCHHHHHHHHHH
T ss_pred             ccccchHHHHHh--cCCceeecCc---HHHHHHHHh-hhcccceeeeeccchHHHHHHHHhc----CCchHHHHHHHHHH
Confidence              1455666555  4888999854   344455555 5555555666777788999999988    44556777777766


Q ss_pred             HHh
Q 029252          163 FLE  165 (196)
Q Consensus       163 ~~~  165 (196)
                      ...
T Consensus       151 a~~  153 (205)
T d1s96a_         151 AVA  153 (205)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.27  E-value=1.7e-11  Score=84.85  Aligned_cols=31  Identities=19%  Similarity=0.186  Sum_probs=27.0

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ..+..|.+|.|.|++||||||+|+.|++.++
T Consensus        17 ~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          17 IKTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             SCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3455678899999999999999999999875

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.24  E-value=5.7e-12  Score=91.66  Aligned_cols=144  Identities=12%  Similarity=0.158  Sum_probs=76.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC-----CcEecHHHHHHHHHHcCCcchHHHHHH-HHc-CC---CCCH----HHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNM-IKE-GK---IVPS----EVT   85 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~-~~---~~~~----~~~   85 (196)
                      +.++|.|+|++||||||+++.|.+.++     ..+++.|++.+..-.   ......... ... ..   .-|+    +.+
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr~~R~---~~~~~~~~~~~~~~~~~~~~~P~A~d~dlL   79 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRA---DMKAELDRRYAAGDATFSHFSYEANELKEL   79 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHH---HHHHHHHHHHHHTCTTCSTTSGGGBCHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCccchh---hhhhhhhhhhhhhccCCCCCCcccccHHHH
Confidence            456999999999999999999988763     357888877531000   000000000 000 00   0111    223


Q ss_pred             HHHHHHHHHh--------------------------------cCCCeEEEeccCCCH-HHHHHHHhhcCCCCcEEEEEEc
Q 029252           86 IKLLQKAMEE--------------------------------SGNDKFLIDGFPRNE-ENRAAFEAVTKIEPEFVLFFDC  132 (196)
Q Consensus        86 ~~~~~~~l~~--------------------------------~~~~~~iidg~~~~~-~~~~~~~~~~~~~~~~~i~l~~  132 (196)
                      ...+......                                .+...+|+||..... .....+    ....|+.||+++
T Consensus        80 ~~~l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~~~~~~~i----r~~~DlkIfVd~  155 (288)
T d1a7ja_          80 ERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNI----AGLADLKIGVVP  155 (288)
T ss_dssp             HHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBC----GGGCSEEEEEEE
T ss_pred             HHHHHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhccccchhhh----HhhcCeEEEEEC
Confidence            3333322211                                113567888853221 000001    124789999999


Q ss_pred             CHHHHHHHHhhc---cCCCCCCcH-HHHHHHHHHHHhcchhH
Q 029252          133 SEEEMERRILNR---NQGREDDNV-ETIRKRFKVFLESSLPV  170 (196)
Q Consensus       133 ~~~~~~~R~~~R---~~~r~~~~~-~~~~~~~~~~~~~~~~~  170 (196)
                      +.++++.|...|   .+|++.+.. +.+.+++..|.....|-
T Consensus       156 d~dlrliRRI~RD~~eRG~s~E~V~~~i~rrmpdy~~yI~Pq  197 (288)
T d1a7ja_         156 VINLEWIQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQ  197 (288)
T ss_dssp             CHHHHHHHHHHHTSSSCCSCCCCHHHHHHHHHHHHHHHTGGG
T ss_pred             CCCeEEEeeehhhhhhcCCCHHHHHHHHHhcchHHHHHHHHh
Confidence            999999999998   556655443 44555666555544443

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=8.2e-12  Score=86.37  Aligned_cols=131  Identities=18%  Similarity=0.268  Sum_probs=78.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCcE-ecHHHHHHHHHHcCC--------cchHHHHHHHHcCCCCCHH--------HHH
Q 029252           24 VFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIKSGS--------ENGTMIQNMIKEGKIVPSE--------VTI   86 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~~~~~-~~~~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~--------~~~   86 (196)
                      |+|.|||||||||+++.|++.++..+ .......|.. +.++        -....+..+...+.++.+.        +..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~-r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~~   81 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNP-RPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSK   81 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCC-CTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCC-CCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceeccc
Confidence            88999999999999999999886321 2111111111 0010        1124445555555543221        114


Q ss_pred             HHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 029252           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE  165 (196)
Q Consensus        87 ~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~~  165 (196)
                      ..+...+.  .+..++++..   ......+.. ....+..++++..+.+++.+|+..|    ..++.+.+..|+..+..
T Consensus        82 ~~v~~~~~--~g~~~~~~~~---~~~~~~l~~-~~~~~~~I~i~~~~~e~l~~RL~~R----~~~~~e~i~~rl~~~~~  150 (190)
T d1lvga_          82 EAVRAVQA--MNRICVLDVD---LQGVRSIKK-TDLCPIYIFVQPPSLDVLEQRLRLR----NTETEESLAKRLAAART  150 (190)
T ss_dssp             HHHHHHHH--TTCEEEEECC---HHHHHHHTT-SSCCCEEEEEECSCHHHHHHHHHHH----TCSCHHHHHHHHHHHHH
T ss_pred             chhhhhhc--CCCceeecch---Hhhhhhhhh-ccccceEEEEecchHHHHHHHHhhc----cccchHHHHHHHHHHHH
Confidence            44555554  4677788753   334444444 5555655666666789999999988    44677888998877654

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=99.20  E-value=9.2e-11  Score=86.98  Aligned_cols=31  Identities=13%  Similarity=0.201  Sum_probs=25.9

Q ss_pred             cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCc
Q 029252          120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (196)
Q Consensus       120 ~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~  152 (196)
                      ...+||.+|||++|++++.+|+.+|  +|+.+.
T Consensus       151 ~~~~pdliIyLd~~pe~~l~RI~~R--gR~~E~  181 (329)
T d1e2ka_         151 PTLPGTNIVLGALPEDRHIDRLAKR--QRPGER  181 (329)
T ss_dssp             CCCTTCEEEEEECCHHHHHHHHHHS--CCTTCC
T ss_pred             ccCCCCEEEEEeCCHHHHHHHHHHc--CCCcCC
Confidence            4557899999999999999999999  555443

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=9.8e-11  Score=86.18  Aligned_cols=41  Identities=15%  Similarity=0.282  Sum_probs=33.3

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhC-------CcEecHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLR   57 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~-------~~~~~~~d~~~   57 (196)
                      ....|.+|.|.|++||||||+|+.|+..+.       ..++++|+++.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~  123 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeEC
Confidence            345688999999999999999999998873       34678888764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=99.13  E-value=4.5e-10  Score=83.54  Aligned_cols=26  Identities=19%  Similarity=0.187  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ...|+|.|+.||||||+++.|++.++
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhc
Confidence            36799999999999999999999874

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.08  E-value=8.5e-10  Score=74.78  Aligned_cols=30  Identities=17%  Similarity=0.216  Sum_probs=26.6

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      +.++.+|+|+|+|||||||+|+.|+++|+.
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            346789999999999999999999999853

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=7.2e-11  Score=81.43  Aligned_cols=115  Identities=15%  Similarity=0.143  Sum_probs=53.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcC----Ccch-HHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG----SENG-TMIQNMIKEGKIVPSEVTIKLLQKAME   94 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~   94 (196)
                      ++++|+|+|+|||||||+|+.|+++++..+++.+.+........    .... .......        ......+.....
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~   89 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV--------RRIAEVAKLFAD   89 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHH--------HHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHH--------HHHHHHHHHHHh
Confidence            57899999999999999999999999654443322222222211    1100 0000000        001122222222


Q ss_pred             hcCCCeEEEeccCCCHHHHHHHHhh--cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           95 ESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        95 ~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                        ....++.+...........+..+  ........+++.++...+.++...+
T Consensus        90 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  139 (195)
T d1x6va3          90 --AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG  139 (195)
T ss_dssp             --TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEECC------------
T ss_pred             --cCCccccccccchHHHHHHHHHHHhccccccccccchhheeeehhhccch
Confidence              36666677655555544444432  3333444666677777777766554

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=99.06  E-value=1.1e-09  Score=81.43  Aligned_cols=37  Identities=14%  Similarity=0.118  Sum_probs=24.2

Q ss_pred             cCCCCcEEEEEEcCHHHHHHHHhhccCCCCCC--cHHHHHH
Q 029252          120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDD--NVETIRK  158 (196)
Q Consensus       120 ~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~--~~~~~~~  158 (196)
                      ...+||.+|||++|++++.+|+.+|  +|+.+  +.+.++.
T Consensus       156 ~~~~pdliIyLd~~pe~~l~RIk~R--gR~~E~i~~eYL~~  194 (331)
T d1osna_         156 AEPPGTNLVVCTVSLPSHLSRVSKR--ARPGETVNLPFVMV  194 (331)
T ss_dssp             CCCSCCEEEEEECCHHHHHHHCC--------CCCCHHHHHH
T ss_pred             ccCCCCEEEEEeCCHHHHHHHHHHc--CCCCCCCCHHHHHH
Confidence            3467899999999999999999999  55544  3444443

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.03  E-value=1.2e-10  Score=84.44  Aligned_cols=122  Identities=15%  Similarity=0.186  Sum_probs=66.9

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcCCcchHHHHHHHHcCC----CCCHHHHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK----IVPSEVTIKLLQ   90 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~   90 (196)
                      ....|..|+|.|||||||||+|+.|++.++  +..++.|++....    ...............    .....+....+.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH----PNFDELVKLYEKDVVKHVTPYSNRMTEAIIS  103 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS----TTHHHHHHHHGGGCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHh----ccCcccchhhhHHHHHHHHhhccchHHHHHH
Confidence            345678899999999999999999999985  5677776653221    111111111000000    000011122222


Q ss_pred             HHHHhcCCCeEEEeccCCCHHHHHH-HHhh-cCCCCcEEEEEEcCHHHHHHHHhhc
Q 029252           91 KAMEESGNDKFLIDGFPRNEENRAA-FEAV-TKIEPEFVLFFDCSEEEMERRILNR  144 (196)
Q Consensus        91 ~~l~~~~~~~~iidg~~~~~~~~~~-~~~~-~~~~~~~~i~l~~~~~~~~~R~~~R  144 (196)
                      ..+.  .....+++........... +..+ .......+.+++++.+.+..|...|
T Consensus       104 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~R  157 (273)
T d1gvnb_         104 RLSD--QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIER  157 (273)
T ss_dssp             HHHH--HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred             HHHh--hCCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHHhcC
Confidence            2332  2555677765544443332 2222 2222334778899999999988887

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.92  E-value=3.2e-10  Score=77.36  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~   52 (196)
                      .++.|+|+|+|||||||+|+.|+++++..++..
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~   38 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWE   38 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTCEEECC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence            467899999999999999999999999888764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=8.6e-09  Score=70.05  Aligned_cols=107  Identities=14%  Similarity=0.201  Sum_probs=56.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC-cEecHHHHHHHHHHc---CCc----chHHHHHHHHcCCCCCHHH-------
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSEV-------   84 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~-~~~~~~d~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~-------   84 (196)
                      +.+.|+|.||+||||||+++.|.+++.. .........|..-.+   +..    ..+.+..+...|.++.+..       
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~~~g~~YG   81 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYG   81 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceeeehhhhhhheecCceEEEeeeccccee
Confidence            4567999999999999999999987632 111111111111000   111    1255566666665543211       


Q ss_pred             -HHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcC
Q 029252           85 -TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS  133 (196)
Q Consensus        85 -~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~  133 (196)
                       ....+...+.  .+..+|+|-.+..   ...+.. .. ....+||+..|
T Consensus        82 t~~~~i~~~~~--~g~~~ildid~~g---~~~lk~-~~-~~~~~IfI~pp  124 (178)
T d1kgda_          82 TKLETIRKIHE--QGLIAILDVEPQA---LKVLRT-AE-FAPFVVFIAAP  124 (178)
T ss_dssp             EEHHHHHHHHH--TTCEEEEECCGGG---HHHHSS-TT-TCEEEEEEECC
T ss_pred             eeeecccchhc--cCceEEeccchhh---hhhhhc-cc-cccceeeEecc
Confidence             1345555555  4788888854322   233332 22 23357777665

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=98.60  E-value=1.8e-06  Score=52.13  Aligned_cols=116  Identities=19%  Similarity=0.267  Sum_probs=69.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  102 (196)
                      +|++.||.+|=|||++..|++.+.++++.-..+--.                +.|.       ..+++..-.-.+...+|
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfela----------------ksgn-------eklfehfnkladednvi   58 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELA----------------KSGN-------EKLFEHFNKLADEDNVI   58 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHHH----------------HHCH-------HHHHHHHHHHTTCCSEE
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhhhh----------------hccC-------HHHHHHHHhhcccccee
Confidence            689999999999999999999999988843211100                0010       12222111112467788


Q ss_pred             EeccC---------------CCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 029252          103 IDGFP---------------RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL  164 (196)
Q Consensus       103 idg~~---------------~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~~~~~  164 (196)
                      +|.|-               .+..+...+.+ ....--.++||.+++.++.+|+.-|  |.....-..+..-++.|+
T Consensus        59 idrfvysnlvyakkfkdysilterqlrfied-kikakakvvylhadpsvikkrlrvr--gdeyiegkdidsilelyr  132 (164)
T d2axpa1          59 IDRFVYSNLVYAKKFKDYSILTERQLRFIED-KIKAKAKVVYLHADPSVIKKRLRVR--GDEYIEGKDIDSILELYR  132 (164)
T ss_dssp             EESCHHHHHHHTTTBSSCCCCCHHHHHHHHH-HHTTTEEEEEEECCHHHHHHHHHHH--TCSSCCSSHHHHHHHHHH
T ss_pred             eehhhhhhhHHHhhcccceehhHHHHHHHHH-HhhhheeEEEEecChHHHHHHhccc--cccccccCCHHHHHHHHH
Confidence            88541               22334444444 3333345999999999999999999  443333333333333444

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.59  E-value=2e-08  Score=71.39  Aligned_cols=38  Identities=18%  Similarity=0.339  Sum_probs=32.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEecHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~~d~~~~~   59 (196)
                      .+|+|+|++||||||+|+.|++++|+.+++.+|.+...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~   39 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDA   39 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHH
Confidence            47999999999999999999999999999965555544

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=2.5e-07  Score=66.35  Aligned_cols=35  Identities=26%  Similarity=0.439  Sum_probs=29.3

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      ....|..+++.||||||||++++.++..++..++.
T Consensus        34 g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~   68 (258)
T d1e32a2          34 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL   68 (258)
T ss_dssp             CCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEE
Confidence            44456789999999999999999999999865543

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=5.2e-08  Score=65.09  Aligned_cols=25  Identities=16%  Similarity=0.239  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -++++|+|+||||||||++.|++++
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3689999999999999999999876

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=4.5e-08  Score=70.97  Aligned_cols=40  Identities=30%  Similarity=0.404  Sum_probs=31.6

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh--------CCcEecHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF--------GYTHLSAGDLL   56 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~--------~~~~~~~~d~~   56 (196)
                      ....|.+|.|.|++||||||+|..|.+.+        ...++++||++
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            34467899999999999999998886654        24567888874

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.39  E-value=1.2e-07  Score=67.08  Aligned_cols=30  Identities=27%  Similarity=0.285  Sum_probs=25.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ++.++++||||+||||+|+.+++.++..+.
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence            345889999999999999999999986544

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=1.2e-07  Score=67.86  Aligned_cols=34  Identities=26%  Similarity=0.393  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      ...|..+++.||||||||++++.+|+.++..++.
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~   75 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT   75 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEE
Confidence            3456789999999999999999999999876543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.38  E-value=1.2e-07  Score=67.60  Aligned_cols=41  Identities=22%  Similarity=0.382  Sum_probs=32.6

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcE--ecHHHHHH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLR   57 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~--~~~~d~~~   57 (196)
                      ....|.-+++.||||||||++++.+++.++..+  ++..++..
T Consensus        38 g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~   80 (247)
T d1ixza_          38 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE   80 (247)
T ss_dssp             TCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhh
Confidence            344567899999999999999999999998765  44555543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=2.1e-07  Score=66.30  Aligned_cols=33  Identities=27%  Similarity=0.450  Sum_probs=27.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      ...+..++|.||||+||||+++.+++.++..++
T Consensus        49 ~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          49 SGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             TTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            344578999999999999999999999986543

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.34  E-value=1.6e-07  Score=63.22  Aligned_cols=26  Identities=38%  Similarity=0.650  Sum_probs=23.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      +.|+|+|+|||||||+++.++..++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCC
Confidence            35899999999999999999998853

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.33  E-value=1.4e-07  Score=69.54  Aligned_cols=35  Identities=17%  Similarity=0.338  Sum_probs=27.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCc--EecHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGD   54 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~--~~~~~d   54 (196)
                      ++..+++.||||||||++|+.||+.++..  .+++..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~   84 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK   84 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhcccccc
Confidence            45678899999999999999999998754  344433

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.33  E-value=2.3e-07  Score=65.58  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=26.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      .+.-+++.||||+||||+|+.+++.++..+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~   64 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR   64 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            3456889999999999999999999986543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.32  E-value=2.2e-07  Score=66.12  Aligned_cols=31  Identities=29%  Similarity=0.427  Sum_probs=27.4

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      +.-|+|.||||||||++|+.||+.++..++.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~   70 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIK   70 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcccccccc
Confidence            4569999999999999999999999976654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.2e-07  Score=62.63  Aligned_cols=24  Identities=38%  Similarity=0.517  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +.|+|+|+|||||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            469999999999999999999887

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=98.22  E-value=5.4e-07  Score=67.58  Aligned_cols=36  Identities=28%  Similarity=0.289  Sum_probs=31.2

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~   52 (196)
                      ..+++.++++.||||+|||++|+.|++.++..+++.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            345667999999999999999999999999887753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.18  E-value=7.4e-07  Score=61.74  Aligned_cols=30  Identities=37%  Similarity=0.728  Sum_probs=26.5

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+|.+|+++||+|+||||.+.+||.++
T Consensus         6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            456778999999999999999999999876

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=5.5e-07  Score=64.75  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=29.3

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      .-..+..|+|.||||||||++++.+++.++..++.
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~   71 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS   71 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEE
Confidence            33456779999999999999999999999976554

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.13  E-value=5.7e-07  Score=69.20  Aligned_cols=32  Identities=16%  Similarity=0.352  Sum_probs=28.7

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      .|..|+|.||||||||.+|+.||+.++.+++.
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~   79 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK   79 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            46689999999999999999999999887765

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.12  E-value=1e-06  Score=60.83  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+.+|++.||+|+||||.+.+||.++
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999876

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.11  E-value=9.3e-07  Score=58.81  Aligned_cols=24  Identities=33%  Similarity=0.206  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++|.|+|.+||||||++..|.++|
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            368899999999999999999876

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.11  E-value=9.7e-07  Score=61.03  Aligned_cols=30  Identities=27%  Similarity=0.554  Sum_probs=22.0

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+...|.+|+++||+|+||||.+.+||.++
T Consensus         7 ~~~k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2           7 IPDKIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SCSSSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            345578899999999999999999999776

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.10  E-value=7.8e-07  Score=62.47  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .+...++|.||||+||||+++.+++.++
T Consensus        43 ~~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          43 GSMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             TCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            3445689999999999999999999764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.06  E-value=1.6e-06  Score=61.89  Aligned_cols=28  Identities=25%  Similarity=0.412  Sum_probs=24.8

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ..+..++|.||||+||||+++.+++.+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            3467899999999999999999999874

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=2.7e-06  Score=58.70  Aligned_cols=28  Identities=32%  Similarity=0.568  Sum_probs=24.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...|.+|+++||+||||||.+.+||.++
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999999776

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=2.4e-06  Score=59.99  Aligned_cols=34  Identities=18%  Similarity=0.363  Sum_probs=25.9

Q ss_pred             hhcccCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           12 ADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        12 ~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ............++|.||||+||||+++.+++.+
T Consensus        24 l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          24 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHH
Confidence            3333444444558899999999999999999875

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.98  E-value=2.8e-06  Score=58.50  Aligned_cols=27  Identities=37%  Similarity=0.481  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +++.+|+++||+||||||.+.+||.++
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999876

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=2e-06  Score=60.02  Aligned_cols=28  Identities=21%  Similarity=0.260  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      ...-+++.||||+||||+|+.+++.++.
T Consensus        35 ~~~~~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          35 NMPHMIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             CCCeEEEECCCCCCchhhHHHHHHHHhc
Confidence            3344789999999999999999998753

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.89  E-value=4e-06  Score=58.93  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++|+|.|++||||||+.+.|.+.+
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Confidence            479999999999999999998766

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.88  E-value=1.1e-05  Score=56.70  Aligned_cols=37  Identities=24%  Similarity=0.372  Sum_probs=28.6

Q ss_pred             hhhhhcccC--CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252            9 VKEADATVT--VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus         9 ~~~~~~~~~--~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+.++..+.  -+++.+++|.|+||||||++|..++...
T Consensus        12 ~~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          12 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             CHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            344455444  2356899999999999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.88  E-value=2.4e-06  Score=61.32  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+++.||||+||||+++.+++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            46678999999999999999986

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=4.3e-06  Score=59.18  Aligned_cols=25  Identities=28%  Similarity=0.611  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +..++|.||||+||||+++.+++.+
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhh
Confidence            4458899999999999999999987

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=2.7e-05  Score=53.22  Aligned_cols=129  Identities=15%  Similarity=0.201  Sum_probs=68.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCCc-EecHHHHHHHHHHcCCc---------chHHHHHHHHcCCCCCHH-----
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT-HLSAGDLLRAEIKSGSE---------NGTMIQNMIKEGKIVPSE-----   83 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~~-~~~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-----   83 (196)
                      ..+..|+|.||   ||+|+.++|.+.+... ........|.. +.++.         ..+.+..++..+.++.+.     
T Consensus         7 ~~~Rpivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~-R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~g~   82 (199)
T d1kjwa2           7 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPK-REYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSH   82 (199)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCC-CTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCCCEEEECc---CHHHHHHHHHHhCccceeecccccccCC-CCCCCCCcccchhhhHHHHHHHHhhccceeeeeecCC
Confidence            34556777786   6999999999987422 12211111211 00110         123455555555544221     


Q ss_pred             ---HHHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHHhhcCCCCcEEEEEEcCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 029252           84 ---VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF  160 (196)
Q Consensus        84 ---~~~~~~~~~l~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~r~~~~~~~~~~~~  160 (196)
                         +....+...+.  .++.+|+|..+.   ....+.. ....+ .+||+..|.....+|+.+|      .+.+.+++++
T Consensus        83 ~YGt~~~~i~~~~~--~gk~~lldid~~---g~~~lk~-~~~~~-i~IfI~pps~e~l~~l~kr------~~~~~i~~r~  149 (199)
T d1kjwa2          83 LYGTSVQSVREVAE--QGKHCILDVSAN---AVRRLQA-AHLHP-IAIFIRPRSLENVLEINKR------ITEEQARKAF  149 (199)
T ss_dssp             EEEEEHHHHHHHHH--TTCEEEECCCTT---HHHHHHH-TTCCC-EEEEECCSSHHHHHHHCTT------SCHHHHHHHH
T ss_pred             ccceeeeEEEehhc--CCCcccccccch---HHhhhhh-hccce-eEEeeccccHHHHHhhhcc------ccHHHHHHHH
Confidence               11455666565  478888885443   3334444 44344 5788887765555565544      2456666666


Q ss_pred             HHHH
Q 029252          161 KVFL  164 (196)
Q Consensus       161 ~~~~  164 (196)
                      ....
T Consensus       150 ~~~~  153 (199)
T d1kjwa2         150 DRAT  153 (199)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=4.4e-06  Score=58.27  Aligned_cols=24  Identities=21%  Similarity=0.448  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .+++.||||+||||+++.+++.+.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhh
Confidence            477999999999999999999864

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=7.8e-06  Score=60.06  Aligned_cols=32  Identities=25%  Similarity=0.434  Sum_probs=26.4

Q ss_pred             CCCc-EEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           19 KKPT-VVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        19 ~~~~-~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      .+|. .+++.||||+|||.+|+.||+.++..++
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i   81 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELL   81 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhhccCCee
Confidence            3444 6889999999999999999999975443

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.77  E-value=1.3e-05  Score=52.51  Aligned_cols=29  Identities=28%  Similarity=0.507  Sum_probs=26.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .++.+|++.|.-||||||+++.+++.++.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            34578999999999999999999999975

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=1.1e-05  Score=56.47  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=23.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      -.+.-++.|.||+||||||+++.++.-
T Consensus        23 i~~Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          23 IHEGEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcC
Confidence            345679999999999999999999753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.73  E-value=8e-06  Score=58.02  Aligned_cols=28  Identities=29%  Similarity=0.464  Sum_probs=23.7

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.+..+++|+|++||||||+++.|..-+
T Consensus        38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          38 IPAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            3456789999999999999999997644

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=1.2e-05  Score=59.21  Aligned_cols=28  Identities=25%  Similarity=0.241  Sum_probs=24.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+..+|.|+|+|||||||+...|...+
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999998766

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=1e-05  Score=56.99  Aligned_cols=28  Identities=32%  Similarity=0.503  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++..++|+|++||||||+++.|..-+
T Consensus        26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          26 IKQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3456889999999999999999998754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.70  E-value=9.7e-06  Score=56.61  Aligned_cols=29  Identities=31%  Similarity=0.295  Sum_probs=23.9

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .-.++-++.|.|++||||||+++.++--.
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCCcchhhHhccCCC
Confidence            34466899999999999999999887533

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.70  E-value=1e-05  Score=57.11  Aligned_cols=29  Identities=17%  Similarity=0.359  Sum_probs=24.2

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .-.++.+++|.|++||||||+++.|+.-+
T Consensus        24 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          24 EAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34466899999999999999999997643

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.67  E-value=1.9e-05  Score=56.24  Aligned_cols=29  Identities=17%  Similarity=0.292  Sum_probs=25.2

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCc
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~   48 (196)
                      .+.+++|.|++|+||||+++.+++.++..
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~   56 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLP   56 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCC
Confidence            45789999999999999999999988643

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.67  E-value=0.00017  Score=49.68  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh-----CCcEecHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAE   59 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~-----~~~~~~~~d~~~~~   59 (196)
                      .++|.|++|||||.+++.+++.+     ...+++..++....
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~   79 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM   79 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHH
Confidence            37899999999999999999876     24566766665543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.67  E-value=1.8e-05  Score=58.17  Aligned_cols=28  Identities=25%  Similarity=0.318  Sum_probs=24.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+..+|.|+|+||+||||+...|.+.+
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999999999865

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.4e-05  Score=56.73  Aligned_cols=28  Identities=29%  Similarity=0.433  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.+..+++|.|++||||||+++.|..-+
T Consensus        37 i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          37 LRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            3466899999999999999999997644

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.66  E-value=1.3e-05  Score=59.86  Aligned_cols=30  Identities=20%  Similarity=0.434  Sum_probs=25.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcE
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~   49 (196)
                      ++..+++.||+|+|||.+|+.||+.++.++
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~~~~~   96 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPI   96 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhcccce
Confidence            456699999999999999999999886543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.65  E-value=1.5e-05  Score=55.92  Aligned_cols=27  Identities=30%  Similarity=0.335  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...-++.|.|++||||||+++.++.-+
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            356789999999999999999997533

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=1.2e-05  Score=56.44  Aligned_cols=28  Identities=25%  Similarity=0.227  Sum_probs=23.5

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+-++.|.|++||||||+++.++--.
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          28 VPAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             ECSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            3456789999999999999999997533

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.62  E-value=1.6e-05  Score=55.70  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -+++|.||+||||||+.+.++.-+
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCChHHHHHHHHHcCC
Confidence            367799999999999999998644

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.62  E-value=2e-05  Score=55.30  Aligned_cols=28  Identities=29%  Similarity=0.351  Sum_probs=23.6

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -...-++.|.||+||||||+.+.++.-+
T Consensus        29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          29 IKDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            3456789999999999999999997644

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.60  E-value=1.3e-05  Score=54.85  Aligned_cols=28  Identities=32%  Similarity=0.336  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++.+++|.|++||||||+.+.++.-+
T Consensus        24 i~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          24 IEKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            3456789999999999999999998644

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=2e-05  Score=56.78  Aligned_cols=28  Identities=25%  Similarity=0.423  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.++.+++|.|++||||||+++.++.-+
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            3466889999999999999999998644

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.57  E-value=1.4e-05  Score=55.73  Aligned_cols=28  Identities=25%  Similarity=0.304  Sum_probs=23.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -...-++.|.||+||||||+.+.|+.-+
T Consensus        23 i~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          23 VESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            3456789999999999999999998644

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.56  E-value=2.4e-05  Score=52.17  Aligned_cols=31  Identities=23%  Similarity=0.414  Sum_probs=25.5

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~   52 (196)
                      ..-|+|.|+||+||||+|..|.++ |+..++.
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~-g~~lv~D   44 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR-GHRLIAD   44 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-CCeEEec
Confidence            467899999999999999998875 6665544

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2.9e-05  Score=53.18  Aligned_cols=27  Identities=15%  Similarity=0.303  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+..++.|.|+|||||||+|..++.+.
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999998754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=3.9e-05  Score=51.99  Aligned_cols=34  Identities=15%  Similarity=0.323  Sum_probs=27.5

Q ss_pred             hhcccCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           12 ADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        12 ~~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ....+....+..++|+|+||+|||++++.||+++
T Consensus        34 l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          34 TIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             HHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            3344555566789999999999999999999866

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.52  E-value=1.2e-05  Score=57.00  Aligned_cols=27  Identities=30%  Similarity=0.378  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+..+++|.|++||||||+++.|..-+
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            456789999999999999999887544

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.51  E-value=2.6e-05  Score=55.44  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=22.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      -...-++.|.|++||||||+++.++-
T Consensus        25 i~~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          25 ARAGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHc
Confidence            34567999999999999999999975

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.50  E-value=2.4e-05  Score=57.28  Aligned_cols=24  Identities=33%  Similarity=0.440  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .+++.||||+|||.+|+.||..++
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHhc
Confidence            455689999999999999999975

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=5.1e-05  Score=52.14  Aligned_cols=27  Identities=11%  Similarity=0.150  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      -|..+++.||+|+||||+|+.+++.+.
T Consensus        23 l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          23 GHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            366799999999999999999999873

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.50  E-value=1.4e-05  Score=56.08  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=23.3

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      -.++-++.|.|++||||||+++.++.-
T Consensus        28 i~~Ge~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          28 IENGERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            345679999999999999999999863

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=4.7e-05  Score=53.45  Aligned_cols=27  Identities=15%  Similarity=0.199  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      .|..++|.||||+||||+|+.+++.++
T Consensus        33 ~~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          33 IHHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            356789999999999999999999874

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=97.49  E-value=2.4e-05  Score=52.18  Aligned_cols=32  Identities=16%  Similarity=0.250  Sum_probs=25.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~   52 (196)
                      ...-++|.|+||+||||+|..|.++ |+..++.
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lvaD   45 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK-NHLFVGD   45 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCceecC
Confidence            4567999999999999999998765 6655544

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.48  E-value=4.3e-05  Score=51.75  Aligned_cols=24  Identities=13%  Similarity=0.238  Sum_probs=20.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .-+.|+|.|.|||||||+.+.|..
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcC
Confidence            335799999999999999999974

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.48  E-value=4e-05  Score=49.86  Aligned_cols=21  Identities=19%  Similarity=0.229  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.|||||||+.+++..
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999875

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=97.46  E-value=4e-05  Score=50.76  Aligned_cols=32  Identities=19%  Similarity=0.366  Sum_probs=25.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEecH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~~   52 (196)
                      ...-++|.|+||+||||++-.|.++ |+..++.
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~li~D   45 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR-GHRLVAD   45 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeC
Confidence            3567999999999999999888776 6655544

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.43  E-value=6.3e-05  Score=50.97  Aligned_cols=34  Identities=15%  Similarity=0.179  Sum_probs=28.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHhCCcEec
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~~   51 (196)
                      .++..++++.|||++|||++|..|.+-++..+++
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis   83 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   83 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHhCCEEEe
Confidence            4566899999999999999999999988765554

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=7.3e-05  Score=53.30  Aligned_cols=32  Identities=13%  Similarity=0.276  Sum_probs=26.6

Q ss_pred             cccCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        14 ~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+....+..++|+|+||+|||++++.|++++
T Consensus        32 ~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          32 QVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             HHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHhcCccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            44555566788999999999999999999875

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.38  E-value=6.4e-05  Score=55.02  Aligned_cols=28  Identities=21%  Similarity=0.439  Sum_probs=23.9

Q ss_pred             CCCCc-EEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPT-VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~-~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +.+|. .+++.||+|+|||.+|+.|++.+
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            34555 67888999999999999999987

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.37  E-value=4.9e-05  Score=50.61  Aligned_cols=26  Identities=27%  Similarity=0.265  Sum_probs=22.1

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .++...|+|.|.+||||||+..+|..
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            34567899999999999999998854

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.37  E-value=4.7e-05  Score=53.50  Aligned_cols=28  Identities=29%  Similarity=0.462  Sum_probs=23.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.+.-++.|.||+||||||+.+.++--+
T Consensus        29 i~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          29 VPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3456799999999999999999998644

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=8e-05  Score=46.08  Aligned_cols=27  Identities=7%  Similarity=0.102  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .....|++.|.+||||||+|+.|...|
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999998877

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.36  E-value=5.3e-05  Score=53.21  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...+++|.|+|||||||+|..++.+.
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45799999999999999999988654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.35  E-value=7.8e-05  Score=53.53  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...+|+|.|+.|+||||+|+.+.++
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999998775

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=3.9e-05  Score=53.59  Aligned_cols=25  Identities=16%  Similarity=0.348  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +..++.|.|+|||||||+|..++-.
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5679999999999999999988643

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.35  E-value=5.6e-05  Score=53.03  Aligned_cols=28  Identities=21%  Similarity=0.317  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+.++.|.||+||||||+.+.|+.-+
T Consensus        25 v~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          25 IEEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3456789999999999999999998654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.31  E-value=7.9e-05  Score=49.45  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=21.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +.+...|+|.|.+||||||+.+++..
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            34567899999999999999998853

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.30  E-value=6.1e-05  Score=53.37  Aligned_cols=28  Identities=36%  Similarity=0.508  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -.+.-++.|.|++||||||+++.++--+
T Consensus        27 v~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          27 VNKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            3456789999999999999999998644

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=5.6e-05  Score=52.83  Aligned_cols=25  Identities=24%  Similarity=0.466  Sum_probs=22.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..+-++.|.|++||||||+.+.++.
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhC
Confidence            3567899999999999999999975

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.28  E-value=3.9e-05  Score=56.56  Aligned_cols=23  Identities=30%  Similarity=0.523  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -++|.|+||+||||+|+.++.-+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            48999999999999999999765

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.27  E-value=0.0001  Score=48.11  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..|+|+|.||+|||||.+++...
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            56999999999999999998753

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00011  Score=51.49  Aligned_cols=35  Identities=14%  Similarity=0.196  Sum_probs=26.5

Q ss_pred             hhhhcccC--CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           10 KEADATVT--VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        10 ~~~~~~~~--~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..++..+.  -++..++.|.|+||||||++|..++..
T Consensus        24 ~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          24 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            33444443  235579999999999999999999864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.24  E-value=0.0001  Score=48.39  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|||||||.++|..
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            5699999999999999998864

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=0.00011  Score=47.79  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .|+|.|.|++|||||..+|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999863

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.22  E-value=0.00011  Score=48.64  Aligned_cols=24  Identities=21%  Similarity=0.218  Sum_probs=21.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +-..|+|.|.|||||||+..+|..
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            346799999999999999999875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00013  Score=48.45  Aligned_cols=24  Identities=25%  Similarity=0.529  Sum_probs=20.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +...|+|.|.+|+|||||.+++..
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHh
Confidence            345799999999999999999875

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=7.1e-05  Score=49.92  Aligned_cols=28  Identities=14%  Similarity=0.226  Sum_probs=23.3

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .+......|+|.|.|++|||||.++|..
T Consensus        11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          11 LPSDTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCccCCEEEEECCCCCCHHHHHHHHhC
Confidence            3455668899999999999999998854

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=0.00011  Score=48.52  Aligned_cols=21  Identities=33%  Similarity=0.653  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.++|||||+.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999974

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.00012  Score=49.75  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +.|+|.|.|+||||||..+|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.00014  Score=47.74  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+||||+.+++..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998875

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.13  E-value=7.9e-05  Score=54.69  Aligned_cols=149  Identities=19%  Similarity=0.178  Sum_probs=73.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC--CcEecHHHHHHHHHHcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  100 (196)
                      .|+|+|++||||||+++.|....+  ..++...|...-.+.......    . +..+..+   -..+++...+..  .-.
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~----~-~~~~~~~---~~~~ll~~~lR~--~pd  237 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYT----Q-LFFGGNI---TSADCLKSCLRM--RPD  237 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEE----E-EECBTTB---CHHHHHHHHTTS--CCS
T ss_pred             CEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccc----e-eccccch---hHHHHHHHHhcc--CCC
Confidence            489999999999999999998764  333333221110000000000    0 0000111   124556666653  333


Q ss_pred             EEEeccCCCHHHHHHHHhhcCCCC-cEEEEEEcCHHHHHHHHhhc-c--CCCCCCcHHHHHHHHHHHHhcchhHHHHHHh
Q 029252          101 FLIDGFPRNEENRAAFEAVTKIEP-EFVLFFDCSEEEMERRILNR-N--QGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (196)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~R~~~R-~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (196)
                      +|+=|.-+..+....+..+..... .+.=+-.-+...+..|+..- .  ......+.+.+..++...             
T Consensus       238 ~iivgEiR~~ea~~~l~a~~tGh~g~~tT~Ha~s~~~a~~Rl~~l~~~~~~~~~~~~~~~~~~i~~~-------------  304 (323)
T d1g6oa_         238 RIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDL-------------  304 (323)
T ss_dssp             EEEESCCCSTHHHHHHHHHHTTCSCEEEEECCSSHHHHHHHHHHHHHTSGGGTTSCHHHHHHHHHHH-------------
T ss_pred             cccCCccCchhHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcccchhhccCCHHHHHHHHHhh-------------
Confidence            444444455555555555433333 34444456667777787654 1  111233444444433221             


Q ss_pred             cCcEEEEeCCCCceeEEe
Q 029252          177 KGKVRKVIFCSPIFILVI  194 (196)
Q Consensus       177 ~~~~~~id~~~~~e~v~~  194 (196)
                      -.-++.++...-.+++++
T Consensus       305 vd~vV~i~r~r~~~e~y~  322 (323)
T d1g6oa_         305 IDMIVHINHHKQCDEFYI  322 (323)
T ss_dssp             CCEEEEECTTSCEEEEEE
T ss_pred             eeEEEEEeCeecccEEEe
Confidence            223566666666666654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.11  E-value=0.00014  Score=50.61  Aligned_cols=35  Identities=23%  Similarity=0.243  Sum_probs=26.8

Q ss_pred             hhhcccC--CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           11 EADATVT--VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        11 ~~~~~~~--~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++..+.  -+...++.|.|+||+|||+++..++-..
T Consensus        22 ~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          22 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3444443  2356899999999999999999998754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00017  Score=47.02  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|++.|.|++|||||.++|..
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999999974

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.00018  Score=48.99  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .|+|.|+|+|||||+.++|...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999763

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.04  E-value=0.00016  Score=50.00  Aligned_cols=33  Identities=18%  Similarity=0.183  Sum_probs=24.6

Q ss_pred             hhhcccC--CCCCcEEEEEcCCCCChHHHHHHHHH
Q 029252           11 EADATVT--VKKPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        11 ~~~~~~~--~~~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .++..+.  -+++.++.|.|+||||||++|..++-
T Consensus        14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3444443  24668999999999999999977653

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.04  E-value=0.0017  Score=43.93  Aligned_cols=28  Identities=11%  Similarity=-0.002  Sum_probs=24.4

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...+.-+++.|++|+||||+|..+++..
T Consensus        12 ~~~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          12 KSEGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             TCSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            4456789999999999999999999865

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.03  E-value=0.00023  Score=53.80  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      ..-+|+|+||+||||||.+..+.+.++
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            446899999999999999999998874

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00029  Score=50.51  Aligned_cols=29  Identities=21%  Similarity=0.319  Sum_probs=25.3

Q ss_pred             CCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        17 ~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+++|++|++.|.-|+||||++..||..+
T Consensus         4 ~~~~p~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           4 LQNIPPYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             GSSCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCcChHHHHHHHHHHHH
Confidence            35678899999999999999988888776

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00017  Score=49.94  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ++++|+|..||||||+.+.|.+..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            678999999999999999998754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.01  E-value=0.00021  Score=47.13  Aligned_cols=21  Identities=14%  Similarity=0.355  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|++.|.+|+||||+.+++..
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.01  E-value=0.00021  Score=47.67  Aligned_cols=28  Identities=25%  Similarity=0.273  Sum_probs=23.2

Q ss_pred             ccCCCCCcEEEEEcCCCCChHHHHHHHH
Q 029252           15 TVTVKKPTVVFVLGGPGSGKGTQCANIV   42 (196)
Q Consensus        15 ~~~~~~~~~i~i~G~~gsGKsTla~~L~   42 (196)
                      .....+...|+|.|.+||||||+.+++.
T Consensus        11 l~~~~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          11 LWGSNKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             GTTCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             HhCCCceEEEEEECCCCCCHHHHHHHHh
Confidence            3455566789999999999999998874

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.01  E-value=0.00016  Score=48.11  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      -|+|.|.|++||||+...|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999999974

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.99  E-value=0.00025  Score=46.44  Aligned_cols=22  Identities=27%  Similarity=0.173  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|++||||||+..++..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            3588999999999999999875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00021  Score=47.80  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+||||+++++..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            3589999999999999999874

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0002  Score=47.05  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ...|+|.|.+|+||||+.+++..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            35689999999999999999865

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00024  Score=46.99  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+|+||||+.+++..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            488999999999999998865

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00027  Score=46.74  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+|+||||+.+++..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999999864

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00029  Score=46.21  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..|+|.|.+|+||||+.+++...
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            56999999999999999998763

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00025  Score=46.75  Aligned_cols=22  Identities=18%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+||||+.+++..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999999986

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00026  Score=46.79  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+||||+++++..
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3599999999999999999875

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.92  E-value=0.00029  Score=48.72  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ....++.|.||+||||+.+.|...
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CCeEEEECCCCCCHHHHHHhhcch
Confidence            467899999999999999998644

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00027  Score=46.37  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|++.|.+|+||||+.+++..
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00027  Score=47.17  Aligned_cols=24  Identities=17%  Similarity=0.189  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ...|+|.|.+|+||||+.+++...
T Consensus         5 ~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           5 AIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999998763

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.90  E-value=0.0004  Score=49.45  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .++.+++|.|+||+||||++..++-.+
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHhh
Confidence            456799999999999999999888653

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00031  Score=46.08  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+|+||||+.+++..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00031  Score=46.55  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+|+||||+.+++..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998865

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.88  E-value=0.00032  Score=46.58  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..|+|.|.+|+||||+.++|...
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36999999999999999999753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00034  Score=45.72  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+|+||||+.+++..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999875

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.86  E-value=0.0002  Score=47.81  Aligned_cols=20  Identities=30%  Similarity=0.351  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChHHHHHHHHH
Q 029252           24 VFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~   43 (196)
                      |.|.|.|++||||+.++|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999854

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.86  E-value=0.00048  Score=45.86  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .+..|+|.|.+++||||+..+|...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3467999999999999999998753

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0004  Score=51.58  Aligned_cols=23  Identities=35%  Similarity=0.725  Sum_probs=18.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..+.+|.|+|||||||+...+..
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHH
Confidence            46899999999999998755433

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00035  Score=46.06  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+|||||.+++..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999999875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00043  Score=45.36  Aligned_cols=22  Identities=27%  Similarity=0.262  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+||||+.+++..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999999875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.81  E-value=0.00039  Score=46.37  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+||||||+.+++..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.81  E-value=0.00027  Score=46.70  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=20.6

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +...|++.|.+||||||+.+++..
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            346799999999999999998864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00041  Score=45.83  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.++|||||+..++..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00041  Score=45.64  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+|+||||+..++..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999975

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.79  E-value=0.00024  Score=47.24  Aligned_cols=20  Identities=30%  Similarity=0.453  Sum_probs=18.5

Q ss_pred             EEEEcCCCCChHHHHHHHHH
Q 029252           24 VFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~   43 (196)
                      |.|.|.|++||||+.++|..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            88999999999999999964

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00042  Score=45.43  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+||||+.+++..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00043  Score=45.32  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+||||+..++..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999999875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00042  Score=45.52  Aligned_cols=21  Identities=19%  Similarity=0.425  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+|+|||++.+++..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999876

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0004  Score=45.70  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+|+||||+.+++..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999998864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00042  Score=45.78  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      -.|+|.|.|++|||||.++|..
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3589999999999999999975

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.00041  Score=46.75  Aligned_cols=21  Identities=19%  Similarity=0.447  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+||||||+.+++..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            489999999999999999875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00043  Score=45.17  Aligned_cols=21  Identities=19%  Similarity=0.281  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+|+||||+.+++..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00045  Score=45.38  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+|+||||+.+++..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            488999999999999998864

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00049  Score=45.25  Aligned_cols=21  Identities=24%  Similarity=0.431  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+|+||||+++++..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998865

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00054  Score=44.88  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+|||++.+++..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4689999999999999999875

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=96.71  E-value=0.00071  Score=48.07  Aligned_cols=29  Identities=17%  Similarity=0.383  Sum_probs=25.9

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      ++..++++.|++++|||+++..+..-++.
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            45689999999999999999999998864

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.0006  Score=48.33  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+.+|.|+||+||||++..++-.+
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4688999999999999999988754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00055  Score=45.32  Aligned_cols=23  Identities=13%  Similarity=0.159  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..|+|.|.+|+||||+..++...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35788999999999999988763

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.66  E-value=0.00042  Score=51.95  Aligned_cols=30  Identities=17%  Similarity=0.389  Sum_probs=24.1

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +....+..++|+|+||+|||+++..|+.++
T Consensus        38 L~r~~k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          38 LLRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             HHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             HhcCCCCCCeEECCCCCCHHHHHHHHHHHH
Confidence            444455567888999999999999999865

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.65  E-value=0.00059  Score=44.80  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+||||+.+++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999999865

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.63  E-value=0.00083  Score=42.39  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .-...+|.+|+|||||+++-.+....+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~~   34 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQGY   34 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTTC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            3467899999999999998776666653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00068  Score=44.85  Aligned_cols=22  Identities=18%  Similarity=0.474  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+||||+.+++..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4599999999999999999875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00061  Score=44.92  Aligned_cols=21  Identities=29%  Similarity=0.416  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+|+|||||++++..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998864

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00074  Score=44.32  Aligned_cols=22  Identities=23%  Similarity=0.373  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+||||+.+++..
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998875

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.00074  Score=47.86  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...++.|.|+|||||||+|..++...
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHH
Confidence            56899999999999999999988755

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.60  E-value=0.00062  Score=48.09  Aligned_cols=24  Identities=25%  Similarity=0.547  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .+..|+|.|.||+||||+...|..
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhC
Confidence            457899999999999999999974

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.60  E-value=0.0006  Score=49.00  Aligned_cols=15  Identities=47%  Similarity=0.700  Sum_probs=12.8

Q ss_pred             EEEEcCCCCChHHHH
Q 029252           24 VFVLGGPGSGKGTQC   38 (196)
Q Consensus        24 i~i~G~~gsGKsTla   38 (196)
                      ++|.|+|||||||++
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            567799999999864

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0009  Score=47.53  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=27.0

Q ss_pred             hcccCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        13 ~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      -..+..+...+|++.|.=|+||||++-.|+..+
T Consensus        12 ~~~~~~~~~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2          12 VDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             HHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            344556777999999999999999988887766

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.56  E-value=0.00036  Score=46.09  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=9.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+||||||+.++|..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999988864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.56  E-value=0.00019  Score=46.66  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .|+|.|.|++||||+.++|...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.56  E-value=0.00079  Score=45.22  Aligned_cols=20  Identities=30%  Similarity=0.459  Sum_probs=18.6

Q ss_pred             cEEEEEcCCCCChHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANI   41 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L   41 (196)
                      ..|+|.|.+||||||+.+++
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00088  Score=44.67  Aligned_cols=22  Identities=18%  Similarity=0.191  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+||||+.+++..
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhh
Confidence            4599999999999999999875

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=96.50  E-value=0.00085  Score=48.57  Aligned_cols=16  Identities=31%  Similarity=0.667  Sum_probs=13.3

Q ss_pred             EEEEcCCCCChHHHHH
Q 029252           24 VFVLGGPGSGKGTQCA   39 (196)
Q Consensus        24 i~i~G~~gsGKsTla~   39 (196)
                      ++|.|+|||||||++-
T Consensus        27 ~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             EEEEECTTSCHHHHHH
T ss_pred             EEEEecCCccHHHHHH
Confidence            6678999999998653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.00089  Score=43.95  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|++.|.+|+||||+.+++..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4588999999999999998875

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0007  Score=45.41  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+|+|||++..++..
T Consensus         4 iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999988875

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.45  E-value=0.0012  Score=45.56  Aligned_cols=25  Identities=32%  Similarity=0.369  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ++++|+|.|-+.+|||||...|...
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhh
Confidence            3456999999999999999999764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00051  Score=45.23  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+|+||||+.+++..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999988754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.00097  Score=44.26  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .|+|.|.+|+|||++.+++..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998876

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.41  E-value=0.00083  Score=44.59  Aligned_cols=22  Identities=23%  Similarity=0.227  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|.|.|.|.+|||||.++|..
T Consensus         6 inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEEeCCCCcHHHHHHHHHH
Confidence            4699999999999999999974

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.41  E-value=0.0003  Score=48.77  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      +....++.|.||+||||+.+.|...
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ccceEEEECCCCccHHHHHHhhccH
Confidence            3466789999999999999998643

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.29  E-value=0.0012  Score=45.45  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|+|.|.+||||||+.+++..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999999854

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0018  Score=44.03  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=21.3

Q ss_pred             cEEEEEcCC-CCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGP-GSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~-gsGKsTla~~L~~~~   45 (196)
                      +.++|+|.. |+||||++-.|+..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            578999995 999999999999877

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0017  Score=42.93  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|++.|.+|+||||+..++..
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            5699999999999999998865

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.002  Score=44.72  Aligned_cols=23  Identities=17%  Similarity=0.190  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..+++|+||.+|||||+.|.++-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            46799999999999999999875

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.04  E-value=0.002  Score=45.12  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 029252           24 VFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      |+|.|.+||||+++|+.+....
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHHhc
Confidence            7888999999999999997643

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.002  Score=43.02  Aligned_cols=23  Identities=26%  Similarity=0.245  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..|+|.|.+|+||||+.+++...
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.00  E-value=0.0027  Score=45.23  Aligned_cols=24  Identities=21%  Similarity=0.220  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      |++.|.|+|.|.+||||+-.+|+.
T Consensus         1 m~~~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           1 MGFKCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHC
Confidence            467899999999999999999985

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.96  E-value=0.003  Score=45.40  Aligned_cols=27  Identities=22%  Similarity=0.214  Sum_probs=23.3

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .++.+.+.|.|.|.|||||+-.+|...
T Consensus         7 ~~~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           7 PGNNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHCC
Confidence            345678999999999999999999853

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.93  E-value=0.0032  Score=44.58  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +.+.+..+.|++||||||+|..++...
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHH
Confidence            456899999999999999998877644

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.90  E-value=0.0028  Score=44.90  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +.+.+.-|.|++||||||+|..++...
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHH
Confidence            356799999999999999999888654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.88  E-value=0.0028  Score=43.63  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .+++|+||.++||||+.|.++-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHH
Confidence            4789999999999999998864

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.036  Score=38.13  Aligned_cols=32  Identities=16%  Similarity=0.042  Sum_probs=25.9

Q ss_pred             cccCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        14 ~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+..+.++..+|.|..|||||-++-..+...
T Consensus        69 ~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~  100 (233)
T d2eyqa3          69 SDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA  100 (233)
T ss_dssp             HHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred             HHHhccCccCeEEEcCCCCCcHHHHHHHHHHH
Confidence            34566678899999999999999988776543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.00038  Score=46.75  Aligned_cols=24  Identities=38%  Similarity=0.542  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+.+|+|+.||||||+..+|.--+
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            466889999999999999997655

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.85  E-value=0.0026  Score=47.77  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .+..|+|.|.||+||||+.+.|..
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            457799999999999999999963

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.83  E-value=0.0023  Score=45.88  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +.+-+|+|+.||||||+..+++=
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            34779999999999999998854

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.76  E-value=0.0032  Score=41.75  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..|+|.|..|+||||+.+++...
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            45899999999999999988643

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.0046  Score=44.11  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=27.4

Q ss_pred             hcccCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        13 ~~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +...+-.++..+.|.|++|+||||++..+++..
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            334555678999999999999999999998754

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.63  E-value=0.0026  Score=42.21  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +|+|+|+..||||..|..|+...+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC
Confidence            479999999999999999986544

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.61  E-value=0.0044  Score=43.97  Aligned_cols=26  Identities=19%  Similarity=0.406  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        19 ~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..+..++|.|.|.+||||+...|..+
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEEecCccchhhhhhhhhcc
Confidence            45677999999999999999999764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0043  Score=46.76  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      =++|.|++|||||++++.+...+
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~~   74 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYTG   74 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHHHH
Confidence            38999999999999987666543

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.47  E-value=0.0019  Score=40.42  Aligned_cols=19  Identities=26%  Similarity=0.296  Sum_probs=16.0

Q ss_pred             CCcEEEEEcCCCCChHHHH
Q 029252           20 KPTVVFVLGGPGSGKGTQC   38 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla   38 (196)
                      +....+|.+++|||||+++
T Consensus         6 ~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTH
T ss_pred             cCCcEEEEcCCCCChhHHH
Confidence            4577899999999999766

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.44  E-value=0.0067  Score=41.51  Aligned_cols=26  Identities=27%  Similarity=0.432  Sum_probs=20.7

Q ss_pred             CCcEEEEE-cCCCCChHHHHHHHHHHh
Q 029252           20 KPTVVFVL-GGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        20 ~~~~i~i~-G~~gsGKsTla~~L~~~~   45 (196)
                      |.++|.+. +..|+||||++..|+..+
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence            45667666 667999999999998766

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.43  E-value=0.045  Score=38.37  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=24.5

Q ss_pred             cccCCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        14 ~~~~~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..+....++.-+|.|..|||||-++-..+..
T Consensus        97 ~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~  127 (264)
T d1gm5a3          97 NDMISEKPMNRLLQGDVGSGKTVVAQLAILD  127 (264)
T ss_dssp             HHHHSSSCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred             HHhhccCcceeeeeccccccccHHHHHHHHH
Confidence            3455667788999999999999998776643

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.28  E-value=0.0057  Score=45.62  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCANIV   42 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~   42 (196)
                      +.+-+|+|+.||||||+..+++
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4577899999999999999985

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.23  E-value=0.0066  Score=42.66  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +.|+|.|.=|+||||++-.|+..+
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~L   25 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGL   25 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHH
Confidence            357789999999999998888766

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.20  E-value=0.0078  Score=42.61  Aligned_cols=31  Identities=19%  Similarity=0.338  Sum_probs=25.4

Q ss_pred             ccCCCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        15 ~~~~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+-.+...+.|.|++|+|||+++..++...
T Consensus        62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          62 LAPYAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             HSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            3444567889999999999999999998764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.20  E-value=0.0062  Score=41.19  Aligned_cols=24  Identities=25%  Similarity=0.129  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..|++.|-+++|||||+.+|....
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHh
Confidence            569999999999999999997544

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.0056  Score=43.99  Aligned_cols=19  Identities=32%  Similarity=0.441  Sum_probs=16.2

Q ss_pred             CcEEEEEcCCCCChHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCA   39 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~   39 (196)
                      .-+-++.|.||+|||||+.
T Consensus        14 ~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          14 GDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             SCEEEEECSTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCccccee
Confidence            3567899999999999874

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.02  E-value=0.012  Score=39.67  Aligned_cols=27  Identities=26%  Similarity=0.277  Sum_probs=22.0

Q ss_pred             CCCCC-cEEEEEcCCCCChHHHHHHHHH
Q 029252           17 TVKKP-TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        17 ~~~~~-~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +..+| ..|++.|-..+|||||+.+|..
T Consensus         3 ~~~~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           3 PKVQPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCCCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCCCCeEEEEEEccCCcHHHHHHHHHh
Confidence            34455 5699999999999999999964

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.00  E-value=0.0091  Score=40.74  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .+.+..|..|+||||+|..||..+
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHHH
Confidence            445566888999999999888766

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.83  E-value=0.0072  Score=43.60  Aligned_cols=19  Identities=37%  Similarity=0.471  Sum_probs=16.1

Q ss_pred             CcEEEEEcCCCCChHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCA   39 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~   39 (196)
                      .-+-++.|.||+||||++.
T Consensus        14 gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          14 GDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             CCEEEEECCTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCccccee
Confidence            3566899999999999983

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=94.79  E-value=0.0057  Score=44.08  Aligned_cols=19  Identities=32%  Similarity=0.441  Sum_probs=16.3

Q ss_pred             CcEEEEEcCCCCChHHHHH
Q 029252           21 PTVVFVLGGPGSGKGTQCA   39 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~   39 (196)
                      .-+-++.|.||+|||||+.
T Consensus        14 ~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CCEEEEEECTTSCHHHHTC
T ss_pred             CCEEEEEccCCCCcccccc
Confidence            3568999999999999874

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.77  E-value=0.013  Score=41.42  Aligned_cols=25  Identities=20%  Similarity=0.154  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +.|.|.|-.|||||||+.+|...-+
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            4699999999999999999976554

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.76  E-value=0.0094  Score=43.05  Aligned_cols=21  Identities=29%  Similarity=0.322  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~   43 (196)
                      -|.|.|.|.+||||+-..|..
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC
T ss_pred             cEeEECCCCCCHHHHHHHHHC
Confidence            489999999999999999965

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=94.73  E-value=0.013  Score=46.97  Aligned_cols=28  Identities=21%  Similarity=0.456  Sum_probs=24.8

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+...|++.|-+|||||+-++.+.+.+
T Consensus        83 ~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          83 SQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             HCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999998866

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=94.72  E-value=0.013  Score=47.22  Aligned_cols=28  Identities=14%  Similarity=0.405  Sum_probs=25.0

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..++..|+|.|-+|||||+-++.+.+.+
T Consensus        88 ~~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          88 DREDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999998876

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.69  E-value=0.021  Score=36.08  Aligned_cols=28  Identities=18%  Similarity=0.131  Sum_probs=22.5

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ...+.+-++.||+.|||||-.-+...++
T Consensus         4 ~~~G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           4 KDHGWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcceeEEEEEeccccHHHHHHHHHHHHh
Confidence            3466888999999999999776666655

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.62  E-value=0.014  Score=41.16  Aligned_cols=25  Identities=32%  Similarity=0.461  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +.|+|.|..|+||||++..|.-.-+
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcC
Confidence            4589999999999999999965443

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.55  E-value=0.015  Score=46.78  Aligned_cols=28  Identities=14%  Similarity=0.427  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..+...|+|.|-+|||||+-++.+.+.+
T Consensus       122 ~~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         122 DRQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999998766

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.01  Score=42.13  Aligned_cols=23  Identities=22%  Similarity=0.262  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .+|.|.|+.+|||||++..|...
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            57999999999999999998753

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.023  Score=35.49  Aligned_cols=25  Identities=32%  Similarity=0.378  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +.+-++.||+.|||||-.-+.+.++
T Consensus         2 G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEecccCHHHHHHHHHHHHH
Confidence            4677899999999999766666554

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.44  E-value=0.016  Score=38.54  Aligned_cols=20  Identities=25%  Similarity=0.273  Sum_probs=16.0

Q ss_pred             EEEEcCCCCChHHHHHHHHH
Q 029252           24 VFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        24 i~i~G~~gsGKsTla~~L~~   43 (196)
                      .++.+|+|||||.++-.++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHH
Confidence            56789999999987666654

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=94.40  E-value=0.016  Score=47.16  Aligned_cols=28  Identities=18%  Similarity=0.494  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..++..|+|.|-||||||+-++.+.+.+
T Consensus       120 ~~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         120 DRENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             HTCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999888766

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=94.39  E-value=0.017  Score=46.67  Aligned_cols=28  Identities=21%  Similarity=0.382  Sum_probs=24.9

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ..++..|+|.|-+|||||+-++.+.+.+
T Consensus        91 ~~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          91 DERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999999998866

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.29  E-value=0.016  Score=41.15  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      .|+|.|.=|+||||++--|+..|
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~L   26 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAAL   26 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46679999999999877776654

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=93.87  E-value=0.02  Score=46.62  Aligned_cols=28  Identities=14%  Similarity=0.359  Sum_probs=24.5

Q ss_pred             CCCCcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        18 ~~~~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      ......|+|.|-||||||.-++.+.+.+
T Consensus       118 ~~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         118 DRENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             HTSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999998866

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.79  E-value=0.032  Score=37.29  Aligned_cols=23  Identities=30%  Similarity=0.238  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..|++.|-..+|||||+.+|...
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHH
Confidence            45999999999999999988754

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.76  E-value=0.021  Score=38.02  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      ..|++.|-..+|||||+.+|..
T Consensus         6 inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEEeccCCcHHHHHHHHHh
Confidence            3589999999999999999964

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.60  E-value=0.039  Score=37.04  Aligned_cols=25  Identities=16%  Similarity=0.165  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      ..+|.+++|+|||.++-.++.+++.
T Consensus        87 ~~ll~~~tG~GKT~~a~~~~~~~~~  111 (206)
T d2fz4a1          87 RGCIVLPTGSGKTHVAMAAINELST  111 (206)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCS
T ss_pred             CcEEEeCCCCCceehHHhHHHHhcC
Confidence            4567889999999999988888864

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.57  E-value=0.042  Score=34.54  Aligned_cols=25  Identities=16%  Similarity=0.199  Sum_probs=18.3

Q ss_pred             CcEEEEEcCCCCChHHHHHHHHHHh
Q 029252           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (196)
Q Consensus        21 ~~~i~i~G~~gsGKsTla~~L~~~~   45 (196)
                      +.+-++.||+.|||||-.-+...++
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHH
Confidence            4567899999999999444444444

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.12  E-value=0.029  Score=40.03  Aligned_cols=22  Identities=36%  Similarity=0.539  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +.|+++|-.+|||||+...|..
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCHHHHHHHHhC
Confidence            4688999999999999999974

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.07  E-value=0.012  Score=39.37  Aligned_cols=18  Identities=11%  Similarity=0.098  Sum_probs=15.2

Q ss_pred             cEEEEEcCCCCChHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCA   39 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~   39 (196)
                      ..+++.+|+|||||+++.
T Consensus        41 ~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             SCEEEECSSHHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHHH
Confidence            457899999999998864

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.96  E-value=0.036  Score=39.29  Aligned_cols=30  Identities=13%  Similarity=0.299  Sum_probs=23.6

Q ss_pred             ccCCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        15 ~~~~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      ..+-.+...+.|.|++|+|||+++..++..
T Consensus        62 l~pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          62 LVPIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             HSCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            344456788999999999999998877643

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.73  E-value=0.034  Score=39.49  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      +.|+++|--+|||||+...|..
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CeEEEEcCCCCCHHHHHHHHhC
Confidence            4588999999999999999974

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=92.54  E-value=0.055  Score=36.84  Aligned_cols=26  Identities=15%  Similarity=0.197  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      ..|++.|=..+||||++.+|....+.
T Consensus        10 ~~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3          10 LRFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            34899999999999999999776653

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=92.31  E-value=0.045  Score=38.59  Aligned_cols=29  Identities=14%  Similarity=0.334  Sum_probs=22.4

Q ss_pred             cCCCCCcEEEEEcCCCCChHHHHHHHHHH
Q 029252           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        16 ~~~~~~~~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      .+-.+...+.|.|++|+|||+++..+...
T Consensus        62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          62 IPVGRGQRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             SCCBTTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred             ccccCCceEeeccCCCCChHHHHHHHHhh
Confidence            33346678899999999999999776543

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=91.86  E-value=0.045  Score=38.70  Aligned_cols=17  Identities=29%  Similarity=0.415  Sum_probs=14.9

Q ss_pred             CCcEEEEEcCCCCChHH
Q 029252           20 KPTVVFVLGGPGSGKGT   36 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsT   36 (196)
                      +...+++.+++|||||+
T Consensus         8 ~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             TTCEEEECCCTTSSTTT
T ss_pred             cCCcEEEEECCCCCHHH
Confidence            45778999999999996

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.62  E-value=0.038  Score=37.83  Aligned_cols=22  Identities=14%  Similarity=0.046  Sum_probs=17.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHHH
Q 029252           22 TVVFVLGGPGSGKGTQCANIVE   43 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~   43 (196)
                      .-+++.+|+|||||+++-..+-
T Consensus        59 ~~~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          59 ESFAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             CCEECCCCBTSCSHHHHHHHHH
T ss_pred             CCEEEEecCCChHHHHHHHHHH
Confidence            4578889999999987665543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.94  E-value=0.091  Score=36.14  Aligned_cols=26  Identities=31%  Similarity=0.413  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      ..|++.|=..+||||++.+|.-..+.
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~   32 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGG   32 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            57999999999999999999876664

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.85  E-value=0.098  Score=35.47  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      ..|++.|--++||||++.+|.-..|.
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g~   29 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRGF   29 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBC
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCC
Confidence            46999999999999999999766553

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.76  E-value=0.069  Score=38.83  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~   46 (196)
                      +.|+|.|-.++|||||+..|...-+
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~g   42 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRAG   42 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHB
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHCC
Confidence            4599999999999999999986655

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=90.57  E-value=0.18  Score=29.28  Aligned_cols=30  Identities=17%  Similarity=0.285  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        20 ~~~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      +.+.|.+.|.-|+|.|.+|+.|.+ .|+.+.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~-~G~~Vs   36 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLN-EGYQIS   36 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHH-HTCEEE
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHh-CCCEEE
Confidence            457799999999999999988854 465544

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.48  E-value=0.11  Score=35.88  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           23 VVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      .|++.|=..+|||||+.+|.-..|.
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll~~~g~   50 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNILFLTGM   50 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHHHHTTS
T ss_pred             EEEEEeeCCCCHHHHHHHHHHHcCC
Confidence            4899999999999999999766654

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.28  E-value=0.34  Score=36.12  Aligned_cols=16  Identities=19%  Similarity=0.275  Sum_probs=13.5

Q ss_pred             EEEEEcCCCCChHHHH
Q 029252           23 VVFVLGGPGSGKGTQC   38 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla   38 (196)
                      ..+|.+..|||||+++
T Consensus        18 ~~lv~A~AGsGKT~~l   33 (485)
T d1w36b1          18 ERLIEASAGTGKTFTI   33 (485)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEEcCchHHHHHH
Confidence            4788999999999854

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=84.78  E-value=0.57  Score=34.75  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCC
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~   47 (196)
                      ....|.|.+|||||-++..+.++.+-
T Consensus        32 ~~q~l~GltGS~ka~~iA~l~~~~~r   57 (413)
T d1t5la1          32 KHQTLLGATGTGKTFTISNVIAQVNK   57 (413)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred             CcEEEeCCCCcHHHHHHHHHHHHhCC
Confidence            55778999999999999999999874

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.58  E-value=0.28  Score=27.97  Aligned_cols=28  Identities=14%  Similarity=0.126  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCChHHHHHHHHHHhCCcEe
Q 029252           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (196)
Q Consensus        22 ~~i~i~G~~gsGKsTla~~L~~~~~~~~~   50 (196)
                      +.|.+.|.-|+|.|-+|+.|. ..|+.+-
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~-~~G~~Vs   29 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEF-SNGNDVY   29 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEE
T ss_pred             cEEEEEeECHHHHHHHHHHHH-hCCCeEE
Confidence            468999999999999998875 4565444

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=80.52  E-value=0.34  Score=31.90  Aligned_cols=22  Identities=18%  Similarity=0.034  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 029252           23 VVFVLGGPGSGKGTQCANIVEH   44 (196)
Q Consensus        23 ~i~i~G~~gsGKsTla~~L~~~   44 (196)
                      -+++.-|+|||||.++....-.
T Consensus        42 ~vlv~apTGsGKT~~~~~~~~~   63 (206)
T d1oywa2          42 DCLVVMPTGGGKSLCYQIPALL   63 (206)
T ss_dssp             CEEEECSCHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCCcchhhhhhhh
Confidence            4788899999999887554433