Citrus Sinensis ID: 029257

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MNNLGSPNPNFNNFSYFPDHNIDHHQHQSSEFELSDYLLFDDHHPGFDEDAYSSQSKASSDKIIMGGSSSGATSEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESPCVVYDYYNHHQQQMPQNGWTLQPNSSSSPPSSSSS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEccccccccEEEcEEccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHEHcccEEEcccccccccEEEccccccccEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnnlgspnpnfnnfsyfpdhnidhhqhqssefelsdyllfddhhpgfdedayssqskassdkiimggsssgatsekNNMRKMKMEVGQRFAFRTKSELEVMDDGFkwrkygkksvknspnprnyykcstggcqvkkrverdredsSYVITTyegthnhespcvvyDYYNhhqqqmpqngwtlqpnssssppsssss
Flexible Loop (DISEMBL)
mnnlgspnpNFNNFSYFPDHNIDHHQHQSSEFELSDYLLFDDHHPGFDEDAyssqskassdkiimggsssgatseknnmRKMKMEVGqrfafrtkselevmddgfkwrkygkksvknspnprnyykcstggcqvkkrverdredsSYVITtyegthnhesPCVVYDYYNHHQQQMPQNGWTLQPNssssppsssss
Low Complexity Region (SEG)
MnnlgspnpnfnnfsyfpDHNIDHHQHQSSEFELSDYLLFDDHHPGFDEDAYSSQSKASSDKIIMGGSSSGATSEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESPCVVYDYYNHHQQQMPQNGWTLQPNssssppsssss
Disordered region (IsUnstruct)
*********************************LSDYLLFD********************************************************LEVMDDGFKWRKY*************YYKCSTGGCQVK**********SYVITTYEGTHNHESPCVVYDYYNHH*************************
Disordered Region (DISOPRED)
********************************************************************************************RTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHE*************************************
Disordered Region (DISEMBL)
MNNLGSPNPNFNNFSYFPDHNIDHHQHQSSEFELSDYLLFDDHHPGFDE*************IIMGGSSSGATSEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESPCVVYDYYNHHQQQMPQNGW****************
Disordered Region (DISPRO)
*************************************************************************************VGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTH****************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNLGSPNPNFNNFSYFPDHNIDHHQHQSSEFELSDYLLFDDHHPGFDEDAYSSQSKASSDKIIMGGSSSGATSEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESPCVVYDYYNHHQQQMPQNGWTLQPNSSSSPPSSSSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
Q93WU9	194	Probable WRKY transcripti	yes	no	0.882	0.891	0.466	3e-34
Q8VWQ5	173	Probable WRKY transcripti	no	no	0.474	0.537	0.648	4e-30
Q9FGZ4	399	Probable WRKY transcripti	no	no	0.382	0.187	0.626	3e-24
Q93WY4	218	Probable WRKY transcripti	no	no	0.464	0.417	0.560	2e-23
O22900	337	Probable WRKY transcripti	no	no	0.433	0.252	0.556	2e-23
Q93WV4	282	Probable WRKY transcripti	no	no	0.387	0.269	0.618	2e-23
Q8VWJ2	318	Probable WRKY transcripti	no	no	0.438	0.270	0.546	2e-22
Q9C983	287	Probable WRKY transcripti	no	no	0.413	0.282	0.560	2e-22
Q93WV6	277	Probable WRKY transcripti	no	no	0.433	0.306	0.552	6e-22
Q8S8P5	519	Probable WRKY transcripti	no	no	0.377	0.142	0.56	8e-22

>sp|Q93WU9|WRK51_ARATH Probable WRKY transcription factor 51 OS=Arabidopsis thaliana GN=WRKY51 PE=2 SV=1

 Score =  144 bits (364), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 115/193 (59%), Gaps = 20/193 (10%)

Query: 1   MNNLGSPNPNFNNFSYFPDHNIDHHQHQSSEFELSDYLLFDDHHPG----FDEDAYSSQS 56
           MN   +P+PNF   +YF D N  +    +++F  S+ + FD    G     +E+  S  S
Sbjct: 1   MNISQNPSPNF---TYFSDENFINPFMDNNDF--SNLMFFDIDEGGNNGLIEEEISSPTS 55

Query: 57  KASSDKII--MGGSSSGAT-SEKNNMRK------MKMEVGQRFAFRTKSELEVMDDGFKW 107
             SS+      GGS S  T S+K +  +         E G R AFRT+S+++VMDDGFKW
Sbjct: 56  IVSSETFTGESGGSGSATTLSKKESTNRGSKESDQTKETGHRVAFRTRSKIDVMDDGFKW 115

Query: 108 RKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESPCVVYDY 167
           RKYGKKSVKN+ N RNYYKCS+ GC VKKRVERD +D++YVITTYEG HNHES   V  Y
Sbjct: 116 RKYGKKSVKNNINKRNYYKCSSEGCSVKKRVERDGDDAAYVITTYEGVHNHESLSNV--Y 173

Query: 168 YNHHQQQMPQNGW 180
           YN        + W
Sbjct: 174 YNEMVLSYDHDNW 186

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWQ5|WRK50_ARATH Probable WRKY transcription factor 50 OS=Arabidopsis thaliana GN=WRKY50 PE=2 SV=1

 Score =  130 bits (328), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 77/94 (81%), Gaps = 1/94 (1%)

Query: 67  GSSSGATSEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYK 126
            +++ A+++  N ++ K   G R AF+T+SE+EV+DDGFKWRKYGKK VKNSP+PRNYYK
Sbjct: 79  AATATASADNQNKKEKKKIKG-RVAFKTRSEVEVLDDGFKWRKYGKKMVKNSPHPRNYYK 137

Query: 127 CSTGGCQVKKRVERDREDSSYVITTYEGTHNHES 160
           CS  GC VKKRVERDR+D S+VITTYEG+HNH S
Sbjct: 138 CSVDGCPVKKRVERDRDDPSFVITTYEGSHNHSS 171

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGZ4|WRK48_ARATH Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 60/75 (80%)

Query: 89  RFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYV 148
           RFAF TKS+++ +DDG++WRKYG+K+VKNSP PR+YY+C+T GC VKKRVER  +D S V
Sbjct: 208 RFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIV 267

Query: 149 ITTYEGTHNHESPCV 163
           +TTYEG H H  P  
Sbjct: 268 MTTYEGQHTHPFPMT 282

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WY4|WRK12_ARATH Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 68/91 (74%)

Query: 68  SSSGATSEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKC 127
           S+SG+   KN ++  +     RF F+TKS+++V+DDG+KWRKYG+K VKNS +PR+YY+C
Sbjct: 111 SNSGSGDMKNKVKIRRKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRC 170

Query: 128 STGGCQVKKRVERDREDSSYVITTYEGTHNH 158
           +   C+VKKRVER  ED   VITTYEG HNH
Sbjct: 171 THNNCRVKKRVERLSEDCRMVITTYEGRHNH 201

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22900|WRK23_ARATH Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 66/88 (75%), Gaps = 3/88 (3%)

Query: 74  SEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQ 133
           ++KNN ++ +     R AF TKSE++ ++DG++WRKYG+K+VKNSP PR+YY+C+T  C 
Sbjct: 149 AKKNNQKRQR---EARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCN 205

Query: 134 VKKRVERDREDSSYVITTYEGTHNHESP 161
           VKKRVER   D S V+TTYEG H H SP
Sbjct: 206 VKKRVERSFRDPSTVVTTYEGQHTHISP 233

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV4|WRK71_ARATH Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 60/76 (78%)

Query: 89  RFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYV 148
           R AF TKSE++ ++DG++WRKYG+K+VKNSP PR+YY+C+T  C VKKRVER  +D S V
Sbjct: 123 RVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIV 182

Query: 149 ITTYEGTHNHESPCVV 164
           ITTYEG HNH  P  +
Sbjct: 183 ITTYEGKHNHPIPSTL 198

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWJ2|WRK28_ARATH Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1

 Score =  105 bits (262), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 64/86 (74%)

Query: 76  KNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVK 135
           K    ++K +   R +F TKSE++ ++DG++WRKYG+K+VKNSP PR+YY+C+T  C VK
Sbjct: 146 KTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVK 205

Query: 136 KRVERDREDSSYVITTYEGTHNHESP 161
           KRVER  +D + VITTYEG HNH  P
Sbjct: 206 KRVERSFQDPTVVITTYEGQHNHPIP 231

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C983|WRK57_ARATH Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1

 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 64/82 (78%), Gaps = 1/82 (1%)

Query: 80  RKMKMEVGQ-RFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRV 138
           +K +  + Q RFAF TKS+++ ++DG++WRKYG+K+VKNSP PR+YY+C+   C VKKRV
Sbjct: 124 KKAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRV 183

Query: 139 ERDREDSSYVITTYEGTHNHES 160
           ER  +D S VITTYEG H H++
Sbjct: 184 ERSSDDPSIVITTYEGQHCHQT 205

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV6|WRK68_ARATH Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1

 Score =  103 bits (257), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 60/85 (70%)

Query: 80  RKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVE 139
           RK   +   + +F T+SE+  +DDG+KWRKYG+K VK+SP PRNYY+C+T  C VKKRVE
Sbjct: 96  RKQTKKKVPKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVE 155

Query: 140 RDREDSSYVITTYEGTHNHESPCVV 164
           R   D S VITTYEG H H  P ++
Sbjct: 156 RSFSDPSSVITTYEGQHTHPRPLLI 180

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  103 bits (257), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 56/75 (74%)

Query: 89  RFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYV 148
           R   +T S+++++DDG++WRKYG+K VK +PNPR+YYKC+T GC V+K VER   D   V
Sbjct: 349 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAV 408

Query: 149 ITTYEGTHNHESPCV 163
           ITTYEG HNH+ P  
Sbjct: 409 ITTYEGKHNHDVPAA 423

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
224096367	190	predicted protein [Populus trichocarpa]	0.857	0.884	0.608	2e-51
224096359	190	predicted protein [Populus trichocarpa]	0.857	0.884	0.603	8e-51
296082517	193	unnamed protein product [Vitis vinifera]	0.790	0.803	0.564	7e-48
259121397	191	WRKY transcription factor 16 [(Populus t	0.755	0.774	0.617	1e-46
224083817	188	predicted protein [Populus trichocarpa]	0.872	0.909	0.582	2e-44
255585312	215	WRKY transcription factor, putative [Ric	0.780	0.711	0.564	3e-43
359480857	149	PREDICTED: probable WRKY transcription f	0.540	0.711	0.722	4e-40
449461443	205	PREDICTED: probable WRKY transcription f	0.688	0.658	0.588	1e-38
351725787	188	uncharacterized protein LOC100500248 [Gl	0.816	0.851	0.563	2e-38
357519659	184	WRKY transcription factor [Medicago trun	0.678	0.722	0.598	3e-38

>gi|224096367|ref|XP_002310610.1| predicted protein [Populus trichocarpa] gi|222853513|gb|EEE91060.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/184 (60%), Positives = 134/184 (72%), Gaps = 16/184 (8%)

Query: 7   PNPNFNNFSYFPDHNIDHHQHQSSEFELSDYLLFDDHHPGFDEDAYSSQSKASSDKIIMG 66
           P P++N +SY  +  +D     + EF+ SDYL+ DD   GF ED  SSQ+  SS+++  G
Sbjct: 8   PKPSYN-YSYI-NEGLDPW---AIEFQPSDYLMLDD---GFGEDDSSSQNMVSSEQVASG 59

Query: 67  GSS--SGATSEKNNM----RKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPN 120
            S+  SGATS  N+M    +K K EV  R AFRTKSELE+MDDGFKWRKYGKKSVKNSPN
Sbjct: 60  SSTGYSGATSRNNSMQNGVKKNKTEVEHRVAFRTKSELEIMDDGFKWRKYGKKSVKNSPN 119

Query: 121 PRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESPCVVYDYYNHHQQQMPQNGW 180
           PRNYYKCS+GGC VKKRVERDREDS YV+T+Y+G HNHESPC+V  YYN+    M  N W
Sbjct: 120 PRNYYKCSSGGCNVKKRVERDREDSRYVLTSYDGVHNHESPCMV--YYNNQMPLMASNAW 177

Query: 181 TLQP 184
           TLQP
Sbjct: 178 TLQP 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096359|ref|XP_002310609.1| predicted protein [Populus trichocarpa] gi|222853512|gb|EEE91059.1| predicted protein [Populus trichocarpa]

 Score =  205 bits (521), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 111/184 (60%), Positives = 133/184 (72%), Gaps = 16/184 (8%)

Query: 7   PNPNFNNFSYFPDHNIDHHQHQSSEFELSDYLLFDDHHPGFDEDAYSSQSKASSDKIIMG 66
           P P++N +SY  +  +D     + EF+ SDYL+ DD   GF ED  SSQ+  S +++  G
Sbjct: 8   PKPSYN-YSYI-NEGLDPW---AIEFQPSDYLMLDD---GFGEDDSSSQNMVSPEQVASG 59

Query: 67  GSS--SGATSEKNNM----RKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPN 120
            S+  SGATS  N+M    +K K EV  R AFRTKSELE+MDDGFKWRKYGKKSVKNSPN
Sbjct: 60  SSTGYSGATSRNNSMQNGVKKNKTEVEHRVAFRTKSELEIMDDGFKWRKYGKKSVKNSPN 119

Query: 121 PRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESPCVVYDYYNHHQQQMPQNGW 180
           PRNYYKCS+GGC VKKRVERDREDS YV+T+Y+G HNHESPC+V  YYN+    M  N W
Sbjct: 120 PRNYYKCSSGGCNVKKRVERDREDSRYVLTSYDGVHNHESPCMV--YYNNQMPLMASNAW 177

Query: 181 TLQP 184
           TLQP
Sbjct: 178 TLQP 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082517|emb|CBI21522.3| unnamed protein product [Vitis vinifera]

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 105/186 (56%), Positives = 120/186 (64%), Gaps = 31/186 (16%)

Query: 7   PNPNFNNFSYFPDHNIDHHQHQSSEFELSDYLLFDDHHPGFDEDAYSSQSKASSDKIIMG 66
           PN  F N S+ P          SSEFE SDYLL DD           +  +A++   + G
Sbjct: 22  PNHIFINSSFAP---------SSSEFEPSDYLLLDD-----------ASDEAAAPVAVTG 61

Query: 67  GSSSGATSEKNNMRKM---------KMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKN 117
           GSS GAT   N    M         K ++G R AF+TKS+LE+MDDGFKWRKYGKKSVKN
Sbjct: 62  GSSIGATPMMNTTTNMECKDGAKRKKTDLGFRVAFKTKSDLEIMDDGFKWRKYGKKSVKN 121

Query: 118 SPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESPCVVYDYYNHHQQQMPQ 177
           SPNPRNYYKC++GGC VKKRVERDREDSSYVITTYEG HNHESPCVV  YY+     +  
Sbjct: 122 SPNPRNYYKCASGGCNVKKRVERDREDSSYVITTYEGVHNHESPCVV--YYDQVPLMVSS 179

Query: 178 NGWTLQ 183
           N WTLQ
Sbjct: 180 NAWTLQ 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121397|gb|ACV92018.1| WRKY transcription factor 16 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/162 (61%), Positives = 118/162 (72%), Gaps = 14/162 (8%)

Query: 31  EFELSDYLLFDDHHPGFDEDAYSSQSKASSDKIIMGGSS--SGATSE------KNNMRKM 82
           E + SDYL+ DD   GF ED+ SSQ+  SS+++  G S+  SGATS       KN + K 
Sbjct: 27  ELQPSDYLMLDD---GFGEDS-SSQNMVSSEQVASGSSTGYSGATSRNNSIKCKNGVNKN 82

Query: 83  KMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDR 142
           K E   R AFRTKS+LE+MDDG+KWRKYGKKSVKNSPNPRNYYKCS+ GC VKKRVERDR
Sbjct: 83  KTEEEHRVAFRTKSDLEIMDDGYKWRKYGKKSVKNSPNPRNYYKCSSSGCNVKKRVERDR 142

Query: 143 EDSSYVITTYEGTHNHESPCVVYDYYNHHQQQMPQNGWTLQP 184
           EDS YV+T+Y+G HNHESPC+   YYN+    M  N WTLQP
Sbjct: 143 EDSRYVLTSYDGVHNHESPCMA--YYNNQMPLMASNAWTLQP 182

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083817|ref|XP_002307134.1| predicted protein [Populus trichocarpa] gi|222856583|gb|EEE94130.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/187 (58%), Positives = 132/187 (70%), Gaps = 16/187 (8%)

Query: 3   NLGSPNPNFNNFSYFPDHNIDHHQHQSSEFELSDYLLFDDHHPGFDEDAYSSQSKASSDK 62
           N    NPN ++FSYF +         ++EF++SDYL+ DD   GF ED  SSQS ASS++
Sbjct: 2   NFPEINPN-HDFSYFNEG----FDPPATEFQVSDYLMLDD---GFGEDNSSSQSMASSEQ 53

Query: 63  I------IMGGSSSGATSEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVK 116
           +         G++S   S +N ++K K+E G R AFRTKSELEVMDDGFKWRKYGKKSVK
Sbjct: 54  VPSGSSSGYSGATSRNNSMQNGVKKNKIEGGHRVAFRTKSELEVMDDGFKWRKYGKKSVK 113

Query: 117 NSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESPCVVYDYYNHHQQQMP 176
           NSP+PRNYYKCS+GGC VKKRVERD EDS+YVITTY+G HNHESPC+V  YYN+      
Sbjct: 114 NSPHPRNYYKCSSGGCDVKKRVERDGEDSAYVITTYDGVHNHESPCMV--YYNNQIPLAV 171

Query: 177 QNGWTLQ 183
            N WT Q
Sbjct: 172 PNAWTFQ 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585312|ref|XP_002533354.1| WRKY transcription factor, putative [Ricinus communis] gi|223526806|gb|EEF29027.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/177 (56%), Positives = 123/177 (69%), Gaps = 24/177 (13%)

Query: 28  QSSEFELSDYLLFDDHHPGFDEDAYSSQSKASSDKIIMG-------GSSSGATSEKNN-- 78
           Q  EF+LSD+L+ D    GF +D+ S  +   SD+   G       G+++ ATSE  N  
Sbjct: 34  QPVEFQLSDFLMLDG---GFGDDSSSQSTMVLSDQFASGASTEYSSGTAASATSENANND 90

Query: 79  -----MRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQ 133
                ++K K EVG R AFRTKSELE+MDDGFKWRKYGKKSVKNSP+PRNYYKCS+GGC 
Sbjct: 91  KWKKGVKKEKAEVGHRVAFRTKSELEIMDDGFKWRKYGKKSVKNSPHPRNYYKCSSGGCS 150

Query: 134 VKKRVERDREDSSYVITTYEGTHNHESPCVV----YDYYNHHQQQMPQ---NGWTLQ 183
           VKKRVERDRED  YVITTY+G HNH++PCVV    +  +++HQ Q+P    NGW LQ
Sbjct: 151 VKKRVERDREDPKYVITTYDGMHNHQTPCVVYYNHHHRHHYHQDQVPVMNPNGWNLQ 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480857|ref|XP_002275836.2| PREDICTED: probable WRKY transcription factor 51-like [Vitis vinifera]

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/108 (72%), Positives = 90/108 (83%), Gaps = 2/108 (1%)

Query: 76  KNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVK 135
           K+  ++ K ++G R AF+TKS+LE+MDDGFKWRKYGKKSVKNSPNPRNYYKC++GGC VK
Sbjct: 36  KDGAKRKKTDLGFRVAFKTKSDLEIMDDGFKWRKYGKKSVKNSPNPRNYYKCASGGCNVK 95

Query: 136 KRVERDREDSSYVITTYEGTHNHESPCVVYDYYNHHQQQMPQNGWTLQ 183
           KRVERDREDSSYVITTYEG HNHESPCVV  YY+     +  N WTLQ
Sbjct: 96  KRVERDREDSSYVITTYEGVHNHESPCVV--YYDQVPLMVSSNAWTLQ 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461443|ref|XP_004148451.1| PREDICTED: probable WRKY transcription factor 51-like [Cucumis sativus]

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/158 (58%), Positives = 110/158 (69%), Gaps = 23/158 (14%)

Query: 31  EFELSDYLLF-DDHHPGFDEDAYSSQSKASSDKIIMG----------------------G 67
           +FELSD+LLF DD++   D+ A SS S  SS+KI  G                      G
Sbjct: 34  DFELSDFLLFGDDNNIVVDQVASSSPSMTSSEKITSGGVDSGGSSTVIDTGSSVVVSSSG 93

Query: 68  SSSGATSEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKC 127
           +S+ +   KN  +K K E+G R AFRTKSE E+MDDG+KWRKYGKKSVKNSPNPRNYYKC
Sbjct: 94  ASTTSIRSKNGEKKRKGEMGCRVAFRTKSEQEIMDDGYKWRKYGKKSVKNSPNPRNYYKC 153

Query: 128 STGGCQVKKRVERDREDSSYVITTYEGTHNHESPCVVY 165
           S+ GC VKK+VERDRED++YVITTYEG HNHESP VVY
Sbjct: 154 SSEGCNVKKKVERDREDANYVITTYEGIHNHESPFVVY 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725787|ref|NP_001235313.1| uncharacterized protein LOC100500248 [Glycine max] gi|255629837|gb|ACU15269.1| unknown [Glycine max]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/172 (56%), Positives = 117/172 (68%), Gaps = 12/172 (6%)

Query: 4   LGSPNPNFNNFSYFPDHNIDHHQHQSSEFELSDYLLFDDHHPGFDEDAYSSQSKASSDKI 63
            G+P+P  N   Y   +++      S E  LSDYL+ DD+     +D+ SSQS  SS+K 
Sbjct: 5   FGNPHPYPNIHQYHAHNSVVSMTPSSPEIALSDYLMLDDYVD--HQDSRSSQSTESSEKA 62

Query: 64  IMG----GSSSGATSEKNNMR------KMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKK 113
                  G S+GATS+ NNM+      + K  VG R AFRTKSELE+MDDG+KWRKYGKK
Sbjct: 63  TFCDPTHGFSTGATSKNNNMKCKNGINENKRGVGPRIAFRTKSELEIMDDGYKWRKYGKK 122

Query: 114 SVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESPCVVY 165
           SVK++PN RNYYKC +GGC VKKRVERDR+DSSYVITTYEG HNHESP   Y
Sbjct: 123 SVKSNPNLRNYYKCPSGGCSVKKRVERDRDDSSYVITTYEGVHNHESPFTTY 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519659|ref|XP_003630118.1| WRKY transcription factor [Medicago truncatula] gi|355524140|gb|AET04594.1| WRKY transcription factor [Medicago truncatula]

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 102/142 (71%), Gaps = 9/142 (6%)

Query: 29  SSEFELSDYLLFDDHHPGFDEDAYSSQSKASSDKIIMGGSS---SGATSEKNNMR----- 80
           SSEF LSDYL+ DD      +    SQS  S +K+     +   + ATS+ NN++     
Sbjct: 26  SSEFILSDYLMLDDICIDHHDQESRSQSTESLEKVTFNDVNQEFNDATSKNNNIKYKNGI 85

Query: 81  -KMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVE 139
            + K E GQ+ AFRT+SELE+MDDG+KWRKYGKKSVKNSPN RNYYKCS+ GC VKKRVE
Sbjct: 86  KRNKGEAGQKIAFRTRSELEIMDDGYKWRKYGKKSVKNSPNLRNYYKCSSVGCNVKKRVE 145

Query: 140 RDREDSSYVITTYEGTHNHESP 161
           RDR+DSSYVIT+YEG HNHE P
Sbjct: 146 RDRDDSSYVITSYEGVHNHEIP 167

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2177639	194	WRKY51 "WRKY DNA-binding prote	0.744	0.752	0.490	1.8e-32
TAIR|locus:2179739	173	WRKY50 "WRKY DNA-binding prote	0.535	0.606	0.598	1.3e-31
TAIR|locus:2157829	399	WRKY48 "WRKY DNA-binding prote	0.469	0.230	0.547	5.8e-27
TAIR|locus:2019382	282	WRKY71 "WRKY DNA-binding prote	0.484	0.336	0.547	1.2e-24
TAIR|locus:2170403	326	WRKY8 "WRKY DNA-binding protei	0.581	0.349	0.467	1.2e-24
TAIR|locus:505006317	218	WRKY12 "WRKY DNA-binding prote	0.459	0.412	0.565	2e-24
TAIR|locus:2096019	277	WRKY68 [Arabidopsis thaliana (	0.448	0.317	0.539	3.9e-24
TAIR|locus:2065124	337	WRKY23 "WRKY DNA-binding prote	0.433	0.252	0.568	5.3e-24
TAIR|locus:2078703	147	WRKY45 "WRKY DNA-binding prote	0.515	0.687	0.462	5.3e-24
TAIR|locus:2177596	687	WRKY2 "WRKY DNA-binding protei	0.489	0.139	0.440	5.8e-24

TAIR|locus:2177639 WRKY51 "WRKY DNA-binding protein 51" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 79/161 (49%), Positives = 98/161 (60%)

Query:    33 ELSDYLLFDDHHPG----FDEDAYSSQSKASSDKII--MGGSSSGAT-SEKNNMRK---- 81
             + S+ + FD    G     +E+  S  S  SS+      GGS S  T S+K +  +    
Sbjct:    28 DFSNLMFFDIDEGGNNGLIEEEISSPTSIVSSETFTGESGGSGSATTLSKKESTNRGSKE 87

Query:    82 --MKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVE 139
                  E G R AFRT+S+++VMDDGFKWRKYGKKSVKN+ N RNYYKCS+ GC VKKRVE
Sbjct:    88 SDQTKETGHRVAFRTRSKIDVMDDGFKWRKYGKKSVKNNINKRNYYKCSSEGCSVKKRVE 147

Query:   140 RDREDSSYVITTYEGTHNHESPCVVYDYYNHHQQQMPQNGW 180
             RD +D++YVITTYEG HNHES   VY  YN        + W
Sbjct:   148 RDGDDAAYVITTYEGVHNHESLSNVY--YNEMVLSYDHDNW 186

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IGI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0050832 "defense response to fungus" evidence=IGI

TAIR|locus:2179739 WRKY50 "WRKY DNA-binding protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 64/107 (59%), Positives = 82/107 (76%)

Query:    54 SQSKASSDKIIMGGSSSGATSEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKK 113
             S  ++ S K  +  +++ +   +N   K K++ G R AF+T+SE+EV+DDGFKWRKYGKK
Sbjct:    67 SHPESPSTKTYVAATATASADNQNKKEKKKIK-G-RVAFKTRSEVEVLDDGFKWRKYGKK 124

Query:   114 SVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHES 160
              VKNSP+PRNYYKCS  GC VKKRVERDR+D S+VITTYEG+HNH S
Sbjct:   125 MVKNSPHPRNYYKCSVDGCPVKKRVERDRDDPSFVITTYEGSHNHSS 171

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IGI

GO:0050832 "defense response to fungus" evidence=IGI

TAIR|locus:2157829 WRKY48 "WRKY DNA-binding protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
 Identities = 52/95 (54%), Positives = 70/95 (73%)

Query:    67 GSSSGATSEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYK 126
             G+     ++K N +K + E   RFAF TKS+++ +DDG++WRKYG+K+VKNSP PR+YY+
Sbjct:   189 GTKPQLKAKKKNQKKAR-EA--RFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYR 245

Query:   127 CSTGGCQVKKRVERDREDSSYVITTYEGTHNHESP 161
             C+T GC VKKRVER  +D S V+TTYEG H H  P
Sbjct:   246 CTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHPFP 280

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0003677 "DNA binding" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2019382 WRKY71 "WRKY DNA-binding protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 52/95 (54%), Positives = 68/95 (71%)

Query:    67 GSSSGATSEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYK 126
             G SS   +++   +  K E   R AF TKSE++ ++DG++WRKYG+K+VKNSP PR+YY+
Sbjct:   101 GESSKQLTKQGKKKGEKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYR 160

Query:   127 CSTGGCQVKKRVERDREDSSYVITTYEGTHNHESP 161
             C+T  C VKKRVER  +D S VITTYEG HNH  P
Sbjct:   161 CTTQKCNVKKRVERSFQDPSIVITTYEGKHNHPIP 195

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2170403 WRKY8 "WRKY DNA-binding protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 57/122 (46%), Positives = 77/122 (63%)

Query:    42 DHHPGFDEDAYSSQSKASSDKIIMGGSSSGATSEKNNMRKMKMEVGQ--RFAFRTKSELE 99
             DHHPG  ED+     K    + +  G      S+K    K K E  +  R +F TK+E++
Sbjct:   127 DHHPG--EDS----GKIRKKREVRDGGEDDQRSQKVVKTKKKEEKKKEPRVSFMTKTEVD 180

Query:   100 VMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHE 159
              ++DG++WRKYG+K+VKNSP PR+YY+C+T  C VKKRVER  +D + VITTYE  HNH 
Sbjct:   181 HLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTVVITTYESQHNHP 240

Query:   160 SP 161
              P
Sbjct:   241 IP 242

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEP

TAIR|locus:505006317 WRKY12 "WRKY DNA-binding protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 52/92 (56%), Positives = 72/92 (78%)

Query:    68 SSSGATSEKNNMRKMKMEVGQ-RFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYK 126
             S+SG+   KN + K++ ++ + RF F+TKS+++V+DDG+KWRKYG+K VKNS +PR+YY+
Sbjct:   111 SNSGSGDMKNKV-KIRRKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYR 169

Query:   127 CSTGGCQVKKRVERDREDSSYVITTYEGTHNH 158
             C+   C+VKKRVER  ED   VITTYEG HNH
Sbjct:   170 CTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2096019 WRKY68 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 48/89 (53%), Positives = 64/89 (71%)

Query:    76 KNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVK 135
             K + ++ K +V  + +F T+SE+  +DDG+KWRKYG+K VK+SP PRNYY+C+T  C VK
Sbjct:    93 KMSRKQTKKKV-PKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVK 151

Query:   136 KRVERDREDSSYVITTYEGTHNHESPCVV 164
             KRVER   D S VITTYEG H H  P ++
Sbjct:   152 KRVERSFSDPSSVITTYEGQHTHPRPLLI 180

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2065124 WRKY23 "WRKY DNA-binding protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 50/88 (56%), Positives = 67/88 (76%)

Query:    74 SEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQ 133
             ++KNN ++ + E   R AF TKSE++ ++DG++WRKYG+K+VKNSP PR+YY+C+T  C 
Sbjct:   149 AKKNNQKRQR-EA--RVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCN 205

Query:   134 VKKRVERDREDSSYVITTYEGTHNHESP 161
             VKKRVER   D S V+TTYEG H H SP
Sbjct:   206 VKKRVERSFRDPSTVVTTYEGQHTHISP 233

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

TAIR|locus:2078703 WRKY45 "WRKY DNA-binding protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 49/106 (46%), Positives = 75/106 (70%)

Query:    72 ATSEKNNMRKMKMEVGQRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGG 131
             ++ EK   +K K E   R+AF+T+S+++++DDG++WRKYG+K+VKN+P PR+YYKC+  G
Sbjct:    35 SSEEKPRSKKKKKEREARYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEG 94

Query:   132 CQVKKRVERDREDSSYVITTYEGTHNH--ESPCVVYDYYNHHQQQM 175
             C+VKK+V+R   D   V+TTY+G H H  + P    D ++H   QM
Sbjct:    95 CRVKKQVQRQWGDEGVVVTTYQGVHTHAVDKPS---DNFHHILTQM 137

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 5.8e-24, Sum P(3) = 5.8e-24
 Identities = 48/109 (44%), Positives = 67/109 (61%)

Query:    66 GGSSSGATSEKNNMRKMKMEV------GQRFAFR-------TKSELEVMDDGFKWRKYGK 112
             GG   G   +++  ++ K+E       G   A R       T S+++++DDG++WRKYG+
Sbjct:   438 GGGGGGGEGDESESKRRKLEAFAAEMSGSTRAIREPRVVVQTTSDVDILDDGYRWRKYGQ 497

Query:   113 KSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESP 161
             K VK +PNPR+YYKC+  GC V+K VER   D   VITTYEG HNH+ P
Sbjct:   498 KVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVP 546

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93WU9	WRK51_ARATH	No assigned EC number	0.4663	0.8826	0.8917	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00070662 hypothetical protein (190 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-30
smart00774	59	smart00774, WRKY, DNA binding domain	1e-29

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  105 bits (265), Expect = 2e-30
 Identities = 35/60 (58%), Positives = 44/60 (73%)

Query: 101 MDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHES 160
           +DDG+ WRKYG+K VK SP PR+YY+C++ GC VKK+VER  +D   V  TYEG HNH  
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  103 bits (260), Expect = 1e-29
 Identities = 33/58 (56%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 102 DDGFKWRKYGKKSVKNSPNPRNYYKCS-TGGCQVKKRVERDREDSSYVITTYEGTHNH 158
           DDG++WRKYG+K +K SP PR+YY+C+ T GC  KK+V+R  +D S V  TYEG H H
Sbjct: 2   DDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.97
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.97
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	92.75
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	85.22

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.97  E-value=1.1e-33  Score=199.98  Aligned_cols=59  Identities=56%  Similarity=1.202  Sum_probs=52.5

Q ss_pred             CCCcchhhhcCCcccCCCCCCCcccccCCCCCCcceeeeecCCCCcEEEEEEeeecCCC
Q 029257          101 MDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHE  159 (196)
Q Consensus       101 ~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~~gC~akKqVqr~~~D~~~~~ttY~G~HnH~  159 (196)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+|+|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            58999999999999999999999999999999999999999999999999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.97  E-value=2e-32  Score=193.79  Aligned_cols=58  Identities=55%  Similarity=1.142  Sum_probs=56.5

Q ss_pred             CCCcchhhhcCCcccCCCCCCCcccccCC-CCCCcceeeeecCCCCcEEEEEEeeecCC
Q 029257          101 MDDGFKWRKYGKKSVKNSPNPRNYYKCST-GGCQVKKRVERDREDSSYVITTYEGTHNH  158 (196)
Q Consensus       101 ~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~-~gC~akKqVqr~~~D~~~~~ttY~G~HnH  158 (196)
                      ++|||+|||||||.|+|+++||+||||++ ++|+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 99999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.75  E-value=0.036  Score=36.72  Aligned_cols=49  Identities=24%  Similarity=0.673  Sum_probs=24.8

Q ss_pred             cCCCcchhhhcCCcccCCCCCCCcccccCCC---CCCcceeeeecCCCCcEEEEEEeeecCC
Q 029257          100 VMDDGFKWRKYGKKSVKNSPNPRNYYKCSTG---GCQVKKRVERDREDSSYVITTYEGTHNH  158 (196)
Q Consensus       100 ~~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~~---gC~akKqVqr~~~D~~~~~ttY~G~HnH  158 (196)
                      ++-|||.-++....      ..+.|++|+..   +|+|+-.+.  .++..  ++...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~~--~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDGR--VVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TTE--EEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCCE--EEECCCccCC
Confidence            45688877765544      45689999963   899987777  33333  3344589998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=85.22  E-value=0.95  Score=32.48  Aligned_cols=30  Identities=30%  Similarity=0.639  Sum_probs=26.1

Q ss_pred             CCCCcceeeeecCCCCcEEEEEEeeecCCCC
Q 029257          130 GGCQVKKRVERDREDSSYVITTYEGTHNHES  160 (196)
Q Consensus       130 ~gC~akKqVqr~~~D~~~~~ttY~G~HnH~~  160 (196)
                      -||+|+=.|-+.. +...+++.+..+|||+.
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCC
Confidence            5999999998866 77888899999999975

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	196
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		2e-20
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		5e-20

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 54/71 (76%)
Query: 91  AFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVIT 150
             +T SE++++DDG++WRKYG+K VK +P PR+YYKC+T GC V+K VER   D   V+T
Sbjct: 7   GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVT 66
Query: 151 TYEGTHNHESP 161
           TYEG HNH+ P
Sbjct: 67  TYEGKHNHDLP 77

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 55/73 (75%)
Query: 89  RFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYV 148
           R    T++  ++++DG++WRKYG+KSVK SP PR+YY+CS+ GC VKK VER   D+  +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 149 ITTYEGTHNHESP 161
           ITTYEG H+H+ P
Sbjct: 62  ITTYEGKHDHDMP 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-41
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	2e-40

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  134 bits (338), Expect = 1e-41
 Identities = 40/73 (54%), Positives = 54/73 (73%)

Query: 89  RFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYV 148
               +T SE++++DDG++WRKYG+K VK +P PR+YYKC+T GC V+K VER   D   V
Sbjct: 5   SSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAV 64

Query: 149 ITTYEGTHNHESP 161
           +TTYEG HNH+ P
Sbjct: 65  VTTYEGKHNHDLP 77

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  131 bits (331), Expect = 2e-40
 Identities = 39/73 (53%), Positives = 55/73 (75%)

Query: 89  RFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYV 148
           R    T++  ++++DG++WRKYG+KSVK SP PR+YY+CS+ GC VKK VER   D+  +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 149 ITTYEGTHNHESP 161
           ITTYEG H+H+ P
Sbjct: 62  ITTYEGKHDHDMP 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=2.2e-37  Score=227.73  Aligned_cols=74  Identities=53%  Similarity=1.079  Sum_probs=72.0

Q ss_pred             eeEEeecCCCccCCCcchhhhcCCcccCCCCCCCcccccCCCCCCcceeeeecCCCCcEEEEEEeeecCCCCCc
Q 029257           89 RFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESPC  162 (196)
Q Consensus        89 rv~~~T~s~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~~gC~akKqVqr~~~D~~~~~ttY~G~HnH~~p~  162 (196)
                      |++|+|.+++++++|||+|||||||.|||+++||+||||++.||+|+|+|||+.+|+.+++|||+|.|||+.|.
T Consensus         2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=2.8e-37  Score=228.09  Aligned_cols=75  Identities=53%  Similarity=1.041  Sum_probs=69.4

Q ss_pred             ceeEEeecCCCccCCCcchhhhcCCcccCCCCCCCcccccCCCCCCcceeeeecCCCCcEEEEEEeeecCCCCCc
Q 029257           88 QRFAFRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESPC  162 (196)
Q Consensus        88 ~rv~~~T~s~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~~gC~akKqVqr~~~D~~~~~ttY~G~HnH~~p~  162 (196)
                      .+++|+|++++++++|||+|||||||.|||+++||+||||++++|+|+|+|||+.+|+.+++|||+|.|||+.|.
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478899999999999999999999999999999999999999999999999999999999999999999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	196
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	4e-30

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  103 bits (259), Expect = 4e-30
 Identities = 40/69 (57%), Positives = 54/69 (78%)

Query: 93  RTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTY 152
           +T SE++++DDG++WRKYG+K VK +P PR+YYKC+T GC V+K VER   D   V+TTY
Sbjct: 2   QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTY 61

Query: 153 EGTHNHESP 161
           EG HNH+ P
Sbjct: 62  EGKHNHDLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	196
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.1e-37  Score=223.59  Aligned_cols=71  Identities=56%  Similarity=1.116  Sum_probs=68.1

Q ss_pred             EeecCCCccCCCcchhhhcCCcccCCCCCCCcccccCCCCCCcceeeeecCCCCcEEEEEEeeecCCCCCc
Q 029257           92 FRTKSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHESPC  162 (196)
Q Consensus        92 ~~T~s~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCs~~gC~akKqVqr~~~D~~~~~ttY~G~HnH~~p~  162 (196)
                      ++|.+++++++|||+|||||||.|+|+++||+||||+.++|+|+|+|||+++|+.+|+|||+|+|||+.|.
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            46888999999999999999999999999999999999999999999999999999999999999999884