Citrus Sinensis ID: 029277

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSLS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEccccccccccccEEEEEEEEcccccEEEccccccccccHHHHHHHHHHHHccccEEEEccccEEEEEEEccccccEEEEEEEEEEHHHcccccccccEEEEEEcHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccccccEEEEEcccccccEcccccEEEEEEEEEEEEccccccccccccEEEEEEEccccccEEEccccccccccHHHHHHHHHHHHcccEEEEEcccccEEEEcccccccccEEEEEEEEEEHHHccccHHHccccEEEcHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccEEccc
Coil and Loop (DISEMBL)
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRyqkgrrqvvgcipyrykCVKQSLDINEEDLEVLVISsqkgkgmlfpkggweIDESIQEAALRETIEEAGVTGIVECELlgewnfksrahntdyqgymfplLVQDQlaewpeknvrsrKWMSVAEARKVCQHWWMKEALDRLVMRLTSqqlhgkedsvgtcsls
Flexible Loop (DISEMBL)
MVALVAQETivslvtpenvvgnlvsrtgrhlqryqkgrrqvvgcipyRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLtsqqlhgkedsvgtcsls
Low Complexity Region (SEG)
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSLS
Disordered region (IsUnstruct)
***LVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT*****************
Disordered Region (DISOPRED)
************************************GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL**********************
Disordered Region (DISEMBL)
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP**********SVAEARKVCQHWWMKEALDRLVMRLTSQQ**************
Disordered Region (DISPRO)
MVA**AQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
Q9ZU95	182	Nudix hydrolase 17, mitoc	yes	no	0.867	0.934	0.583	3e-51
Q9LQU5	176	Nudix hydrolase 18, mitoc	no	no	0.831	0.926	0.596	4e-50
Q9LE73	207	Nudix hydrolase 4 OS=Arab	no	no	0.811	0.768	0.584	4e-49
Q8VY81	198	Nudix hydrolase 21, chlor	no	no	0.846	0.838	0.571	4e-48
Q52K88	202	Nudix hydrolase 13, mitoc	no	no	0.882	0.856	0.434	2e-35
Q93ZY7	203	Nudix hydrolase 12, mitoc	no	no	0.857	0.827	0.422	2e-32
Q9LHK1	180	Nudix hydrolase 16, mitoc	no	no	0.75	0.816	0.490	2e-31
Q566C7	168	Diphosphoinositol polypho	yes	no	0.576	0.672	0.328	1e-07
O95989	172	Diphosphoinositol polypho	yes	no	0.576	0.656	0.320	3e-07
Q9JI46	168	Diphosphoinositol polypho	yes	no	0.571	0.666	0.323	6e-07

>sp|Q9ZU95|NUD17_ARATH Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1

 Score =  201 bits (511), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/173 (58%), Positives = 130/173 (75%), Gaps = 3/173 (1%)

Query: 23  LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGG 82
           L SRTGR  QRY KGRRQVVGC+PYR+K +     I++E +EVLVISSQKG  ++FPKGG
Sbjct: 9   LASRTGRQFQRYNKGRRQVVGCVPYRFK-LSNDGKISDE-VEVLVISSQKGHALMFPKGG 66

Query: 83  WEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW 142
           WE+DES++EAA RE +EEAGV G VE +L G+W+F S++  T Y+G MFP+LV +QL  W
Sbjct: 67  WELDESVEEAASRECLEEAGVLGNVEHQL-GKWDFLSKSRGTYYEGLMFPMLVTEQLELW 125

Query: 143 PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSL 195
           PE++VR R WM+V EAR+ C+ WWMKEALD LV RL+S     KE+   + S+
Sbjct: 126 PEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSPMNQPKEEKTMSISI 178

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q9LQU5|NUD18_ARATH Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1

 Score =  197 bits (500), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 99/166 (59%), Positives = 126/166 (75%), Gaps = 3/166 (1%)

Query: 23  LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGG 82
           LVSRTGR  QRY KGRRQVVGCIPYR K +     I++E  EVLVISSQKG  ++FPKGG
Sbjct: 4   LVSRTGRQSQRYNKGRRQVVGCIPYRLK-ISSDGTISDE-FEVLVISSQKGHALMFPKGG 61

Query: 83  WEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW 142
           WE+DES++EAA RE++EEAGV G VE +L G+W+F S++  T Y+G+MFP+LV+++L  W
Sbjct: 62  WELDESVEEAASRESLEEAGVVGNVERQL-GKWDFLSKSKGTFYEGFMFPMLVKEELELW 120

Query: 143 PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKED 188
           PE+++R R WM V EAR  C+ WWMKEALD LV RL+   L   E+
Sbjct: 121 PEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQRLSLLSLKPMEE 166

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LE73|NUDT4_ARATH Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1

 Score =  194 bits (492), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 97/166 (58%), Positives = 127/166 (76%), Gaps = 7/166 (4%)

Query: 14  VTPENV--VGNLVSRTGRHLQRY-QKGRRQVVGCIPYRYKCVKQSLD-INEEDLEVLVIS 69
           V P  +  V +LVSRTGR LQRY   G RQVVGC+PYRYK  KQ ++ +  + ++VL++S
Sbjct: 32  VVPAQIEKVVSLVSRTGRDLQRYDHAGYRQVVGCVPYRYK--KQEVNGVETQVIQVLLVS 89

Query: 70  SQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGY 129
           +QKGKGMLFPKGGWE DES++EAALRETIEEAGVTG +E E LG+W +KS+ H+  + GY
Sbjct: 90  AQKGKGMLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYKSKRHSIIHDGY 148

Query: 130 MFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 175
           MF LLV  +   WPE  +R R+W+S+ EAR+VCQ+WWM+EAL+  +
Sbjct: 149 MFALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALEAFI 194

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q8VY81|NUD21_ARATH Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1

 Score =  190 bits (483), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 100/175 (57%), Positives = 125/175 (71%), Gaps = 9/175 (5%)

Query: 5   VAQETIVSLVTPENVVGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDL 63
           +  + IV + TP   V +LVSRTGR LQRY   G RQVVGC+PYRYK           ++
Sbjct: 26  IPSKKIVPVPTPSEKVVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYK------KHGGGEI 79

Query: 64  EVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH 122
           EVL+IS+QK GKGML PKGGWEIDESI+EAALRETIEEAGVTG +E E LG+W +KS+ H
Sbjct: 80  EVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLE-ESLGKWQYKSKRH 138

Query: 123 NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR 177
              + G+MFPLLV  Q   WPE   R RKW+S++EA ++CQ+ WM+EAL+  + R
Sbjct: 139 TMIHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALEAFINR 193

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q52K88|NUD13_ARATH Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/191 (43%), Positives = 122/191 (63%), Gaps = 18/191 (9%)

Query: 20  VGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQ------SLDINEEDLEVLVISSQKG 73
           + NL +RTGR  QRY    R V GCIPYR   VK       S+D  E  L+VL+ISS   
Sbjct: 1   MSNLSARTGRDHQRYDNNFRLVSGCIPYRL--VKDEEEDSTSVDF-ENKLQVLMISSPNR 57

Query: 74  KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY------- 126
             ++FPKGGWE DE++ EAA RE +EEAGV GI+  + LG W F+S++ + +        
Sbjct: 58  HDLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGG 117

Query: 127 -QGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHG 185
            +GYMF L V+++LA WPE++ R R+W++V EA ++C++ WM+ AL+   +R+ +++   
Sbjct: 118 CKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEF-LRVMAEEGST 176

Query: 186 KEDSVGTCSLS 196
           KEDS+   S+S
Sbjct: 177 KEDSLAISSIS 187

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(6) hexaphosphate (Ap(6)A), diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A) and adenosine tetraphosphate (p(4)A) as substrates, but not diadenosine 5',5'''-P(1)P(4) tetraphosphate (Ap(4)A), diadenosine 5',5'''-P(1)P(3) triphosphate (Ap(3)A), deoxyribonucleoside triphosphates, ribonucleoside triphosphates, diphosphoinositol pentakisphosphate (PP-InsP(5)) and 5-phospho-alpha-D-ribosyl diphosphate (PRPP).

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q93ZY7|NUD12_ARATH Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/187 (42%), Positives = 111/187 (59%), Gaps = 19/187 (10%)

Query: 23  LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED--------LEVLVISSQKGK 74
           L SRTGR  QRY    R V GCIPYR        D  EED        LEVL++SS    
Sbjct: 4   LSSRTGRDRQRYDNNFRLVSGCIPYRL----MKADETEEDSGVDFVNKLEVLMVSSPNRH 59

Query: 75  GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQ------G 128
            ++FPKGGWE DE++ EAA RE IEEAGV GI+    LG W F+S++   + +      G
Sbjct: 60  DLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKG 119

Query: 129 YMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ-QLHGKE 187
           YMF L V ++L +WPE+  R R+W++V EA ++C++ WM+ AL+  +  +  + +L  +E
Sbjct: 120 YMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFLRVMEDERRLRTEE 179

Query: 188 DSVGTCS 194
           ++V   S
Sbjct: 180 ETVHDSS 186

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LHK1|NUD16_ARATH Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/159 (49%), Positives = 109/159 (68%), Gaps = 12/159 (7%)

Query: 22  NLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED---LEVLVISSQKGKGMLF 78
           +LV+RTGR  QRY+ G R V GCIP+RY  V    D N E    ++VL+ISS  G G+LF
Sbjct: 3   DLVARTGRLQQRYEDGSRLVAGCIPFRY--VNSDKDGNSESGKVIQVLMISSSSGPGLLF 60

Query: 79  PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY------QGYMFP 132
           PKGGWE DE+++EAA RE +EEAGV GI+  + LG + FKS++H  ++      +  M+ 
Sbjct: 61  PKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFKSKSHQDEFSPEGLCKAAMYA 119

Query: 133 LLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 171
           L V+++LA WPE   R+RKW+++ EA + C+H WMK+AL
Sbjct: 120 LYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDAL 158

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q566C7|NUDT3_RAT Diphosphoinositol polyphosphate phosphohydrolase 1 OS=Rattus norvegicus GN=Nudt3 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 18/131 (13%)

Query: 37  GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALR 95
           G ++   C+ +R          +E + EVL++SS +     + P GG E +E    AA+R
Sbjct: 16  GYKKRAACLCFR----------SESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVR 65

Query: 96  ETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEK-NV-RSRKWM 153
           E  EEAGV G +   L+G +  + R H T    Y++ L+V + L +W +  N+ R R+W 
Sbjct: 66  EVCEEAGVKGTL-GRLVGIFENQERKHRT----YVYVLIVTEVLEDWEDSVNIGRKREWF 120

Query: 154 SVAEARKVCQH 164
            + EA KV Q+
Sbjct: 121 KIEEAVKVLQY 131

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. InsP6 (inositol hexakisphophate) is not a substrate. Acts as a negative regulator of the ERK1/2 pathway. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|O95989|NUDT3_HUMAN Diphosphoinositol polyphosphate phosphohydrolase 1 OS=Homo sapiens GN=NUDT3 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 18/131 (13%)

Query: 37  GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALR 95
           G ++   C+ +R          +E + EVL++SS +     + P GG E +E    AA+R
Sbjct: 16  GYKKRAACLCFR----------SESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVR 65

Query: 96  ETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEK-NV-RSRKWM 153
           E  EEAGV G +   L+G +  + R H T    Y++ L+V + L +W +  N+ R R+W 
Sbjct: 66  EVCEEAGVKGTL-GRLVGIFENQERKHRT----YVYVLIVTEVLEDWEDSVNIGRKREWF 120

Query: 154 SVAEARKVCQH 164
            + +A KV Q+
Sbjct: 121 KIEDAIKVLQY 131

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. InsP6 (inositol hexakisphophate) is not a substrate. Acts as a negative regulator of the ERK1/2 pathway. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9JI46|NUDT3_MOUSE Diphosphoinositol polyphosphate phosphohydrolase 1 OS=Mus musculus GN=Nudt3 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 18/130 (13%)

Query: 37  GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALR 95
           G ++   C+ +R          +E + EVL++SS +     + P GG E +E    AA+R
Sbjct: 16  GYKKRAACLCFR----------SESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVR 65

Query: 96  ETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEK-NV-RSRKWM 153
           E  EEAGV G +   L+G +  + R H T    Y++ L+V + L +W +  N+ R R+W 
Sbjct: 66  EVCEEAGVKGTL-GRLVGIFENQERKHRT----YVYVLIVTEVLEDWEDSVNIGRKREWF 120

Query: 154 SVAEARKVCQ 163
            + +A KV Q
Sbjct: 121 KIEDAIKVLQ 130

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. InsP6 (inositol hexakisphophate) is not a substrate. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate (By similarity). Acts as a negative regulator of the ERK1/2 pathway.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
255580361	193	diphosphoinositol polyphosphate phosphoh	0.877	0.891	0.732	2e-67
357460851	195	Nudix hydrolase [Medicago truncatula] gi	0.903	0.907	0.719	8e-66
217075388	195	unknown [Medicago truncatula]	0.903	0.907	0.719	1e-65
449445094	185	PREDICTED: nudix hydrolase 18, mitochond	0.938	0.994	0.680	3e-65
351726568	211	uncharacterized protein LOC100500105 [Gl	0.887	0.824	0.711	8e-65
224065132	193	predicted protein [Populus trichocarpa]	0.938	0.953	0.677	1e-64
356569788	199	PREDICTED: nudix hydrolase 17, mitochond	0.882	0.869	0.717	3e-64
224079516	188	predicted protein [Populus trichocarpa]	0.913	0.952	0.672	3e-64
351724865	190	uncharacterized protein LOC100305863 [Gl	0.841	0.868	0.751	8e-64
356553271	190	PREDICTED: nudix hydrolase 17, mitochond	0.846	0.873	0.732	1e-63

>gi|255580361|ref|XP_002531008.1| diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis] gi|223529406|gb|EEF31368.1| diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 134/183 (73%), Positives = 152/183 (83%), Gaps = 11/183 (6%)

Query: 1   MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKG-RRQVVGCIPYRYKCVKQSLDIN 59
           MVALV+QET+       NV   LVSRTGRHLQRY KG RRQVVGCIPYRYK  +Q+    
Sbjct: 1   MVALVSQETV-------NVA--LVSRTGRHLQRYSKGGRRQVVGCIPYRYKTGEQNYKEI 51

Query: 60  EEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS 119
              LEVLVISSQKGKG+LFPKGGWE+DE+I+EAA RET+EEAGV GIVECEL G+W+FKS
Sbjct: 52  GGGLEVLVISSQKGKGLLFPKGGWELDETIKEAASRETLEEAGVRGIVECEL-GKWSFKS 110

Query: 120 RAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT 179
           + H+T Y+GYMFPLLVQ+QL  WPEKNVR RKWMSVA+AR+ CQHWWMKEALDRLV RL+
Sbjct: 111 KTHDTFYEGYMFPLLVQEQLEFWPEKNVRERKWMSVADARECCQHWWMKEALDRLVNRLS 170

Query: 180 SQQ 182
           SQQ
Sbjct: 171 SQQ 173

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460851|ref|XP_003600707.1| Nudix hydrolase [Medicago truncatula] gi|355489755|gb|AES70958.1| Nudix hydrolase [Medicago truncatula] gi|388507980|gb|AFK42056.1| unknown [Medicago truncatula]

 Score =  255 bits (651), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 131/182 (71%), Positives = 155/182 (85%), Gaps = 5/182 (2%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKC-VKQSLDINEEDLEVLVI 68
           +V+LV+ ENVV  LVSRTGR LQRY+KGRRQVVGCIPYRYK   K SLD+++E LEVLVI
Sbjct: 1   MVALVSQENVV-TLVSRTGRELQRYRKGRRQVVGCIPYRYKIGEKNSLDVSDE-LEVLVI 58

Query: 69  SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQG 128
           SSQKGKGMLFPKGGWE+DES +EAALRET+EEAGV GIVE + LG+W+FKS+ ++T Y G
Sbjct: 59  SSQKGKGMLFPKGGWELDESQKEAALRETMEEAGVRGIVEGK-LGKWSFKSKTYDTLYDG 117

Query: 129 YMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKED 188
           YMFPLLVQ++L  WPE+N+R R+WMS++EAR VCQHWWMKEALDRLV RL  Q+L G E 
Sbjct: 118 YMFPLLVQEELEFWPEQNLRQRRWMSISEARDVCQHWWMKEALDRLVNRLLGQKL-GSEK 176

Query: 189 SV 190
            V
Sbjct: 177 QV 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075388|gb|ACJ86054.1| unknown [Medicago truncatula]

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 131/182 (71%), Positives = 155/182 (85%), Gaps = 5/182 (2%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKC-VKQSLDINEEDLEVLVI 68
           +V+LV+ ENVV  LVSRTGR LQRY+KGRRQVVGCIPYRYK   K SLD+++E LEVLVI
Sbjct: 1   MVALVSQENVV-TLVSRTGRELQRYRKGRRQVVGCIPYRYKIGEKNSLDVSDE-LEVLVI 58

Query: 69  SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQG 128
           SSQKGKGMLFPKGGWE+DES +EAALRET+EEAGV GIVE + LG+W+FKS+ ++T Y G
Sbjct: 59  SSQKGKGMLFPKGGWELDESQKEAALRETMEEAGVRGIVEGK-LGKWSFKSKTYDTLYDG 117

Query: 129 YMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKED 188
           YMFPLLVQ++L  WPE+N+R R+WMS++EAR VCQHWWMKEALDRLV RL  Q+L G E 
Sbjct: 118 YMFPLLVQEELEFWPEQNLRQRRWMSISEARDVCQHWWMKEALDRLVNRLLRQKL-GSEK 176

Query: 189 SV 190
            V
Sbjct: 177 QV 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445094|ref|XP_004140308.1| PREDICTED: nudix hydrolase 18, mitochondrial-like [Cucumis sativus] gi|449529539|ref|XP_004171757.1| PREDICTED: nudix hydrolase 18, mitochondrial-like [Cucumis sativus]

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 134/197 (68%), Positives = 153/197 (77%), Gaps = 13/197 (6%)

Query: 1   MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQ-KGRRQVVGCIPYRYKCVKQSLDIN 59
           MVALV+Q+ +VSLV          SRTGRHLQRY  +GRRQVVGCIPYRYK  K+S   N
Sbjct: 1   MVALVSQDNMVSLV----------SRTGRHLQRYDIRGRRQVVGCIPYRYKTTKKSTLDN 50

Query: 60  EEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS 119
            E+LEVLVISSQKGKGMLFPKGGWE DESI EAA RET+EEAGV GIV+ E LG W+FKS
Sbjct: 51  IEELEVLVISSQKGKGMLFPKGGWETDESITEAASRETLEEAGVRGIVQGE-LGSWSFKS 109

Query: 120 RAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT 179
           + ++T Y+GYMFPLLV++QL  WPEKN R R WMS  EAR+VCQHWWMKEALD LV RL+
Sbjct: 110 KTYDTFYEGYMFPLLVKEQLEFWPEKNFRQRVWMSAHEAREVCQHWWMKEALDILVGRLS 169

Query: 180 SQQLHGKEDSVGTCSLS 196
           SQ+    E+ V  CSLS
Sbjct: 170 SQKKQQMEE-VMPCSLS 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726568|ref|NP_001236875.1| uncharacterized protein LOC100500105 [Glycine max] gi|255629193|gb|ACU14941.1| unknown [Glycine max]

 Score =  251 bits (642), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 126/177 (71%), Positives = 149/177 (84%), Gaps = 3/177 (1%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKC-VKQSLDINEEDLEVLVI 68
           +V++V+ ENV   LVSRTGR LQRY+KGRRQVVGCIPYR+K   K SLD+  ++LEVLVI
Sbjct: 1   MVAVVSQENVAA-LVSRTGRELQRYRKGRRQVVGCIPYRFKIGEKTSLDVVSDELEVLVI 59

Query: 69  SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQG 128
           SSQKGKGMLFPKGGWE+DES +EAALRET+EEAGV GIV  +L G+W+FKS+ H+T Y+G
Sbjct: 60  SSQKGKGMLFPKGGWELDESKKEAALRETMEEAGVRGIVGGKL-GKWSFKSKTHDTFYEG 118

Query: 129 YMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHG 185
           YMFPLLVQ+QL  WPE+NVR R WMSV EAR+VCQHWWMKEALDRLV R + Q+  G
Sbjct: 119 YMFPLLVQEQLEFWPEQNVRQRIWMSVTEAREVCQHWWMKEALDRLVNRPSGQKQLG 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065132|ref|XP_002301684.1| predicted protein [Populus trichocarpa] gi|222843410|gb|EEE80957.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 126/186 (67%), Positives = 147/186 (79%), Gaps = 2/186 (1%)

Query: 11  VSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISS 70
            +LV+ ENVV +LVSRTGRHLQRY KGRRQVVGCIPYRYK    +    E++LEVLVISS
Sbjct: 3   TALVSQENVVASLVSRTGRHLQRYDKGRRQVVGCIPYRYKNGSSNTSEVEDELEVLVISS 62

Query: 71  QKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYM 130
           QKGKGMLFPKGGWE+DE+I++AA RET EEAGV G VE + LG W F+SR H TDY GY+
Sbjct: 63  QKGKGMLFPKGGWELDETIKQAASRETYEEAGVKGNVEHQ-LGHWTFQSRTHGTDYDGYL 121

Query: 131 FPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSV 190
           FPL V++ L  WPEKN R RKWMSV EAR+ CQ WWMKEALD LV RL  +Q  G+E+ +
Sbjct: 122 FPLHVKEVLDFWPEKNNRQRKWMSVEEARECCQRWWMKEALDVLVDRLAGRQQLGEEE-M 180

Query: 191 GTCSLS 196
           G+CSLS
Sbjct: 181 GSCSLS 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569788|ref|XP_003553078.1| PREDICTED: nudix hydrolase 17, mitochondrial-like [Glycine max]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 127/177 (71%), Positives = 153/177 (86%), Gaps = 4/177 (2%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQS-LDINEEDLEVLVI 68
           +V++V+ ENVV  LVSRTGR LQRY+KGRRQVVGCIPYR+K  +++ LD+++E LEVLVI
Sbjct: 1   MVAVVSQENVVA-LVSRTGRELQRYRKGRRQVVGCIPYRFKIGEKTCLDVSDE-LEVLVI 58

Query: 69  SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQG 128
           SSQKGKGMLFPKGGWE+DES +EAALRET+EEAGV GIV  + LG+W+FKS+ H+T Y+G
Sbjct: 59  SSQKGKGMLFPKGGWELDESKKEAALRETMEEAGVRGIVGGK-LGKWSFKSKTHDTFYEG 117

Query: 129 YMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHG 185
           YMFPLLVQ+QL  WPE+NVR R WMSV EAR+VCQHWWMKEALDRLV RL+ Q+  G
Sbjct: 118 YMFPLLVQEQLEFWPEQNVRQRIWMSVTEAREVCQHWWMKEALDRLVNRLSGQKQLG 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079516|ref|XP_002305883.1| predicted protein [Populus trichocarpa] gi|222848847|gb|EEE86394.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 125/186 (67%), Positives = 145/186 (77%), Gaps = 7/186 (3%)

Query: 11  VSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISS 70
            ++V+ ENVV +LVSRTGRHLQRY KGRRQVVGCIPYRY   K      E+  +VLVISS
Sbjct: 3   AAVVSQENVVASLVSRTGRHLQRYNKGRRQVVGCIPYRYTKGK-----GEDGFQVLVISS 57

Query: 71  QKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYM 130
           QKGKGMLFPKGGWE DE+I++ A+RET EEAGV G++E +L GEW F+SR H TDY+GYM
Sbjct: 58  QKGKGMLFPKGGWESDETIKQGAVRETYEEAGVKGVLEPQL-GEWTFQSRTHGTDYEGYM 116

Query: 131 FPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSV 190
           FPL V+++L  WPEK  R RKWMSV EAR+ CQHWWMKEALD LV RL  QQ    ED V
Sbjct: 117 FPLRVKEELDFWPEKTNRLRKWMSVTEARECCQHWWMKEALDVLVDRLAGQQ-QLDEDEV 175

Query: 191 GTCSLS 196
           G+CSLS
Sbjct: 176 GSCSLS 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724865|ref|NP_001237840.1| uncharacterized protein LOC100305863 [Glycine max] gi|255626815|gb|ACU13752.1| unknown [Glycine max]

 Score =  248 bits (633), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 127/169 (75%), Positives = 147/169 (86%), Gaps = 4/169 (2%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQ-SLDINEEDLEVLVI 68
           +V+LV+ ENVV  LVSRTGR LQRY+KGRRQVVGCIPYRYK   Q SLD+ EE LEVLVI
Sbjct: 1   MVALVSRENVV-VLVSRTGRELQRYRKGRRQVVGCIPYRYKIGDQTSLDVQEE-LEVLVI 58

Query: 69  SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQG 128
           +SQKGKGMLFPKGGWE+DES +EAALRETIEEAGV G VE + LG+W+FKS+ H+T Y+G
Sbjct: 59  TSQKGKGMLFPKGGWELDESKKEAALRETIEEAGVRGTVEGK-LGKWSFKSKTHDTFYEG 117

Query: 129 YMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR 177
           YMFPLLVQ+QL  WPE+NVR R WMS++EAR+VCQHWWMKEAL+RLV R
Sbjct: 118 YMFPLLVQEQLELWPEQNVRQRIWMSISEAREVCQHWWMKEALERLVNR 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553271|ref|XP_003544981.1| PREDICTED: nudix hydrolase 17, mitochondrial-like [Glycine max]

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 145/168 (86%), Gaps = 2/168 (1%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVIS 69
           +V+LV+ +NVV  LVSRTGR LQRY+KGRRQVVGCIPYRYK   Q+    +E+LEVLVIS
Sbjct: 1   MVALVSQDNVVA-LVSRTGRELQRYRKGRRQVVGCIPYRYKIGDQTSLEAQEELEVLVIS 59

Query: 70  SQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGY 129
           SQKGKGMLFPKGGWE+DES +EAALRET+EEAGV G VE + LG+W+FKS+ H+T Y+GY
Sbjct: 60  SQKGKGMLFPKGGWELDESKKEAALRETMEEAGVRGTVEGK-LGKWSFKSKTHDTFYEGY 118

Query: 130 MFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR 177
           MFPLLVQ+QL  WPE+NVR R WMSV+EAR+VCQHWWMKEAL+RLV R
Sbjct: 119 MFPLLVQEQLEFWPEQNVRQRIWMSVSEAREVCQHWWMKEALERLVNR 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2065440	182	NUDT17 "nudix hydrolase homolo	0.867	0.934	0.583	4.6e-50
TAIR|locus:2006817	176	NUDT18 "nudix hydrolase homolo	0.831	0.926	0.596	6.7e-49
TAIR|locus:2014164	207	NUDT4 "nudix hydrolase homolog	0.790	0.748	0.602	1.1e-48
TAIR|locus:2206835	198	NUDT21 "nudix hydrolase homolo	0.872	0.863	0.566	8.8e-47
TAIR|locus:2091275	180	NUDT16 "nudix hydrolase homolo	0.75	0.816	0.496	1.7e-36
TAIR|locus:2090842	202	NUDX13 "nudix hydrolase homolo	0.897	0.871	0.430	2.2e-34
TAIR|locus:2010331	203	NUDT12 "nudix hydrolase homolo	0.852	0.822	0.427	6e-32
UNIPROTKB|G4MKT5	168	MGG_06680 "Nudix/MutT family p	0.719	0.839	0.341	1.6e-15
ASPGD|ASPL0000000420	159	ndxD [Emericella nidulans (tax	0.739	0.911	0.335	3.4e-13
CGD|CAL0000145	192	orf19.4229 [Candida albicans (	0.75	0.765	0.340	7.1e-13

TAIR|locus:2065440 NUDT17 "nudix hydrolase homolog 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 101/173 (58%), Positives = 129/173 (74%)

Query:    23 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGG 82
             L SRTGR  QRY KGRRQVVGC+PYR+K       I++E +EVLVISSQKG  ++FPKGG
Sbjct:     9 LASRTGRQFQRYNKGRRQVVGCVPYRFKLSNDG-KISDE-VEVLVISSQKGHALMFPKGG 66

Query:    83 WEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW 142
             WE+DES++EAA RE +EEAGV G VE +L G+W+F S++  T Y+G MFP+LV +QL  W
Sbjct:    67 WELDESVEEAASRECLEEAGVLGNVEHQL-GKWDFLSKSRGTYYEGLMFPMLVTEQLELW 125

Query:   143 PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSL 195
             PE++VR R WM+V EAR+ C+ WWMKEALD LV RL+S     KE+   + S+
Sbjct:   126 PEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSPMNQPKEEKTMSISI 178

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2006817 NUDT18 "nudix hydrolase homolog 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 99/166 (59%), Positives = 126/166 (75%)

Query:    23 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGG 82
             LVSRTGR  QRY KGRRQVVGCIPYR K +     I++E  EVLVISSQKG  ++FPKGG
Sbjct:     4 LVSRTGRQSQRYNKGRRQVVGCIPYRLK-ISSDGTISDE-FEVLVISSQKGHALMFPKGG 61

Query:    83 WEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW 142
             WE+DES++EAA RE++EEAGV G VE +L G+W+F S++  T Y+G+MFP+LV+++L  W
Sbjct:    62 WELDESVEEAASRESLEEAGVVGNVERQL-GKWDFLSKSKGTFYEGFMFPMLVKEELELW 120

Query:   143 PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKED 188
             PE+++R R WM V EAR  C+ WWMKEALD LV RL+   L   E+
Sbjct:   121 PEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQRLSLLSLKPMEE 166

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2014164 NUDT4 "nudix hydrolase homolog 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 97/161 (60%), Positives = 126/161 (78%)

Query:    17 ENVVGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLD-INEEDLEVLVISSQKGK 74
             E VV +LVSRTGR LQRY   G RQVVGC+PYRYK  KQ ++ +  + ++VL++S+QKGK
Sbjct:    38 EKVV-SLVSRTGRDLQRYDHAGYRQVVGCVPYRYK--KQEVNGVETQVIQVLLVSAQKGK 94

Query:    75 GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLL 134
             GMLFPKGGWE DES++EAALRETIEEAGVTG +E E LG+W +KS+ H+  + GYMF LL
Sbjct:    95 GMLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYKSKRHSIIHDGYMFALL 153

Query:   135 VQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 175
             V  +   WPE  +R R+W+S+ EAR+VCQ+WWM+EAL+  +
Sbjct:   154 VSQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALEAFI 194

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2206835 NUDT21 "nudix hydrolase homolog 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 102/180 (56%), Positives = 127/180 (70%)

Query:     5 VAQETIVSLVTPENVVGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDL 63
             +  + IV + TP   V +LVSRTGR LQRY   G RQVVGC+PYRYK  K        ++
Sbjct:    26 IPSKKIVPVPTPSEKVVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYK--KHG----GGEI 79

Query:    64 EVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH 122
             EVL+IS+QK GKGML PKGGWEIDESI+EAALRETIEEAGVTG +E E LG+W +KS+ H
Sbjct:    80 EVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLE-ESLGKWQYKSKRH 138

Query:   123 NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ 182
                + G+MFPLLV  Q   WPE   R RKW+S++EA ++CQ+ WM+EAL+  + R    Q
Sbjct:   139 TMIHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALEAFINRKCQTQ 198

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2091275 NUDT16 "nudix hydrolase homolog 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 79/159 (49%), Positives = 110/159 (69%)

Query:    22 NLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED---LEVLVISSQKGKGMLF 78
             +LV+RTGR  QRY+ G R V GCIP+RY  V    D N E    ++VL+ISS  G G+LF
Sbjct:     3 DLVARTGRLQQRYEDGSRLVAGCIPFRY--VNSDKDGNSESGKVIQVLMISSSSGPGLLF 60

Query:    79 PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY--QGY----MFP 132
             PKGGWE DE+++EAA RE +EEAGV GI+  + LG + FKS++H  ++  +G     M+ 
Sbjct:    61 PKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFKSKSHQDEFSPEGLCKAAMYA 119

Query:   133 LLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 171
             L V+++LA WPE   R+RKW+++ EA + C+H WMK+AL
Sbjct:   120 LYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDAL 158

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2090842 NUDX13 "nudix hydrolase homolog 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 81/188 (43%), Positives = 123/188 (65%)

Query:    20 VGNLVSRTGRHLQRYQKGRRQVVGCIPYRY-KCVKQ-SLDIN-EEDLEVLVISSQKGKGM 76
             + NL +RTGR  QRY    R V GCIPYR  K  ++ S  ++ E  L+VL+ISS     +
Sbjct:     1 MSNLSARTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDFENKLQVLMISSPNRHDL 60

Query:    77 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY--------QG 128
             +FPKGGWE DE++ EAA RE +EEAGV GI+  + LG W F+S++ + +         +G
Sbjct:    61 VFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKG 120

Query:   129 YMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKED 188
             YMF L V+++LA WPE++ R R+W++V EA ++C++ WM+ AL+   +R+ +++   KED
Sbjct:   121 YMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEF-LRVMAEEGSTKED 179

Query:   189 SVGTCSLS 196
             S+   S+S
Sbjct:   180 SLAISSIS 187

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA;ISS;IDA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IDA

TAIR|locus:2010331 NUDT12 "nudix hydrolase homolog 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 77/180 (42%), Positives = 113/180 (62%)

Query:    23 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED----LEVLVISSQKGKGMLF 78
             L SRTGR  QRY    R V GCIPYR     ++ + +  D    LEVL++SS     ++F
Sbjct:     4 LSSRTGRDRQRYDNNFRLVSGCIPYRLMKADETEEDSGVDFVNKLEVLMVSSPNRHDLVF 63

Query:    79 PKGGWEIDESIQEAALRETIEEAGVTGIVECEL-LGEWNFKSRAHNTDYQ------GYMF 131
             PKGGWE DE++ EAA RE IEEAGV GI+  EL LG W F+S++   + +      GYMF
Sbjct:    64 PKGGWEDDETVLEAASREAIEEAGVKGILR-ELPLGVWEFRSKSSTVEDECLGGCKGYMF 122

Query:   132 PLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ-LHGKEDSV 190
              L V ++L +WPE+  R R+W++V EA ++C++ WM+ AL+  +  +  ++ L  +E++V
Sbjct:   123 ALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFLRVMEDERRLRTEEETV 182

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

UNIPROTKB|G4MKT5 MGG_06680 "Nudix/MutT family protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 56/164 (34%), Positives = 83/164 (50%)

Query:    25 SRTGRHLQRYQ-KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGW 83
             SRTGR  QRY  KG R V G +            ++E+   VL+  S + KG + PKGGW
Sbjct:    16 SRTGRSKQRYNSKGERLVAGVVA-----------LSEDKEYVLLTQSTRRKGWVLPKGGW 64

Query:    84 EIDESIQEAALRETIEEAGVTGIVECEL--LGEWNFKSRAHNTDYQG-------YMFPLL 134
             E DE   EAA RE  EEAG+   ++ +L  + E   K+ + +    G       + +   
Sbjct:    65 ETDEECTEAAEREAWEEAGIVVTIDYDLGQIEETRVKTSSKSAK-SGKREKAIYHFYEAT 123

Query:   135 VQDQLAEWPEKNVRSRKWMSVAEA-RKVCQHWWMKEALDRLVMR 177
             V  +  +WPEK+ R RKWM+  +A   +     ++EAL+R  M+
Sbjct:   124 VTSEEQDWPEKDKRQRKWMTFVDAWESLKDRPELQEALNRSTMK 167

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000000420 ndxD [Emericella nidulans (taxid:162425)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 56/167 (33%), Positives = 83/167 (49%)

Query:    20 VGNLVSRTGRHLQRY-QKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLF 78
             V ++ SR GR  QRY  KG R V G +P             ++ L +++ S+ +G G + 
Sbjct:     5 VRSMESRVGRKNQRYGSKGERLVAGVVPLS----------KDKSLVMMIQSAGRG-GWVL 53

Query:    79 PKGGWEIDE-SIQEAALRETIEEAGVTGIVECEL--LGEWN----FKSRAHNTDYQGYMF 131
             PKGGWE DE S Q+AA RE  EEAGV   V  +L  + +        S +    YQ   F
Sbjct:    54 PKGGWETDEASAQQAACREAWEEAGVICTVLRDLGTISDMRPSTMLTSNSPRASYQ--FF 111

Query:   132 PLLVQDQLAEWPEKNVRSRKWMSVAEARK-VCQHWWMKEALDRLVMR 177
              + V  +   WPE + R R+W++  +A   +     + EAL+R  M+
Sbjct:   112 EVTVDREEDRWPEMHKRRRQWVTYTQAAAALASRPELLEALNRSSMK 158

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IEA

GO:0008486 "diphosphoinositol-polyphosphate diphosphatase activity" evidence=IEA

GO:0000298 "endopolyphosphatase activity" evidence=IEA

GO:0034431 "bis(5'-adenosyl)-hexaphosphatase activity" evidence=IEA

GO:0015961 "diadenosine polyphosphate catabolic process" evidence=IEA

GO:0046855 "inositol phosphate dephosphorylation" evidence=IEA

GO:0006798 "polyphosphate catabolic process" evidence=IEA

CGD|CAL0000145 orf19.4229 [Candida albicans (taxid:5476)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 61/179 (34%), Positives = 89/179 (49%)

Query:    16 PENVVGNLVSRTGRHLQRY--QKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG 73
             P   V +  +R GR  QRY  + G R V GC+     C+ ++ D      ++++ISS K 
Sbjct:    10 PNLPVKSQTAREGRENQRYNSETGARIVAGCM-----CLNETKD------KIIMISSSKH 58

Query:    74 KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL--------------LGEWNFK 118
             K   + PKGG E+DES  E A+RET EEAGV GI+  +L               GE++  
Sbjct:    59 KNRWIVPKGGNELDESELETAVRETWEEAGVEGIIIKKLPVVLDSRGSQAPVIKGEFDPD 118

Query:   119 SRAHNTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM 176
                  +++  + F L V DQL+  WPE   R R+W + +EA+         E +D L M
Sbjct:   119 VATPKSEF--HFFELQV-DQLSTSWPEMKKRQRRWCTYSEAKHELLKSKRPELVDALNM 174

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008486 "diphosphoinositol-polyphosphate diphosphatase activity" evidence=IEA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IEA

GO:0000298 "endopolyphosphatase activity" evidence=IEA

GO:0034431 "bis(5'-adenosyl)-hexaphosphatase activity" evidence=IEA

GO:0046855 "inositol phosphate dephosphorylation" evidence=IEA

GO:0015961 "diadenosine polyphosphate catabolic process" evidence=IEA

GO:0006798 "polyphosphate catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZU95	NUD17_ARATH	3, ., 6, ., 1, ., -	0.5838	0.8673	0.9340	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.921
3rd Layer	3.6.1.13	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_II2208 hypothetical protein (193 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
cd04666	122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	2e-40
pfam00293	133	pfam00293, NUDIX, NUDIX domain	1e-16
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	1e-09
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	4e-07
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	9e-06
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	2e-05
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	2e-05
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	1e-04
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	1e-04
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	1e-04
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	3e-04
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	3e-04
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	6e-04
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	9e-04
cd04686	131	cd04686, Nudix_Hydrolase_27, Members of the Nudix	0.002
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	0.004
cd03672	145	cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), t	0.004

>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score =  133 bits (337), Expect = 2e-40
 Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 11/131 (8%)

Query: 40  QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIE 99
              G IPYR             ++EVL+++S++    + PKGG E DES  EAA RE  E
Sbjct: 1   LQAGAIPYR---------ETGGEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWE 51

Query: 100 EAGVTGIVECELLGEWNFKSRAHN--TDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAE 157
           EAGV G +    LG + ++ R+ N     +  +FPL V ++L EWPE + R RKW S  E
Sbjct: 52  EAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEE 111

Query: 158 ARKVCQHWWMK 168
           A  + +   +K
Sbjct: 112 AALLVEEPELK 122

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 72.5 bits (178), Expect = 1e-16
 Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 17/145 (11%)

Query: 38  RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGML----FPKGGWEIDESIQEAA 93
           RR+ VG +               ED EVL++   +          P G  E  ES +EAA
Sbjct: 1   RRRAVGVVLLN------------EDGEVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAA 48

Query: 94  LRETIEEAGVTGIVECELL-GEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKW 152
           +RE  EE G+  ++   L   E+    R        ++  LL  +   +  E  V   +W
Sbjct: 49  VRELEEETGLRVLLLLLLGVLEYPAPGRDGGEHVHVFLAELLGGEPEPQPNEDEVSEVRW 108

Query: 153 MSVAEARKVCQHWWMKEALDRLVMR 177
           + + E  ++     ++E +  L+  
Sbjct: 109 VPLEELLELLLAGEIREVIALLLAL 133

Length = 133

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 61  EDLEVLVISSQKGKGML--FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118
           ED  VL++      G L   P GG E  E+++EAA+RE  EE G+   V   LLG +  +
Sbjct: 10  EDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL-RLLGVYEVE 68

Query: 119 SRAHNTDYQGYMFPLLVQDQLAEW-PEKNVRSRKWMSVAEAR 159
           S         ++F   +        P   +   +W+++ E  
Sbjct: 69  SPDEGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELP 110

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 47.5 bits (112), Expect = 4e-07
 Identities = 30/126 (23%), Positives = 43/126 (34%), Gaps = 12/126 (9%)

Query: 48  RYKCVKQSLDINEEDLEVLVISSQKGKGML-FPKGGWEIDESIQ-EAALRETIEEAGVTG 105
                   L   +   EVL+   +   G+   P G  E  E +  EAA RE  EE G+  
Sbjct: 9   VRDVAVAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRV 68

Query: 106 IV-ECELLGEWNF---KSRAHNTDYQGYMFPLLVQDQLAEWPEKN------VRSRKWMSV 155
                ELLGE+        +         F   V D LA   E        +   +W+ +
Sbjct: 69  KDERLELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPL 128

Query: 156 AEARKV 161
            E   +
Sbjct: 129 DELAAL 134

Length = 161

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 43.0 bits (102), Expect = 9e-06
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 66  LVISSQKGKGMLF--PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHN 123
           L++  +   G++F  P G  E  ES+ EAA+RET+EE G   +    LLG + + +   +
Sbjct: 14  LLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWH-VEPTALLGIYQWTAPDSD 72

Query: 124 TDYQGYMFPLLVQDQLAEWP-EKNVRSRKWMSVAE 157
           T Y  + F   + + L + P +  +    W+++ E
Sbjct: 73  TTYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEE 107

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 43  GCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG 102
           G I YR             ++E L++ +  G    FPKG  E  E   EAALRET EE G
Sbjct: 6   GAIIYRRLN---------NEIEYLLLQASYG-HWDFPKGHVEPGEDDLEAALRETEEETG 55

Query: 103 VT 104
           +T
Sbjct: 56  IT 57

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 56  LDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE- 114
              ++  +EVL+I   +G     PKG  E  E+  EAA+RE  EE G+   V    LG  
Sbjct: 9   FRGSDGGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDP-LGTI 67

Query: 115 --WNFKS--RAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARK 160
             W   S  R H T +   M  L    +    P++ V   +W+   EAR 
Sbjct: 68  RYWFSSSGKRVHKTVHWWLMRAL--GGEFTPQPDEEVDEVRWLPPDEARD 115

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 55  SLDINEEDLEVLVISSQKGKGM--LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELL 112
           S+ I  +  E+L+I   K      +FP GG E  E+ +EAA RE +EE G+   VE   L
Sbjct: 4   SIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFL 63

Query: 113 GEWNFKSRAH 122
                    H
Sbjct: 64  IVNQNGRTEH 73

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 66  LVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT-------GIVECELLGEWNFK 118
           L++   K +G  FP G  E  E+I+EAA RE  EE G         G  + +L       
Sbjct: 13  LLLVRHKDRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFET 72

Query: 119 S 119
            
Sbjct: 73  L 73

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 78  FPKGGWEIDESIQEAALRETIEEAGVTG 105
            P G  +  E  +EAA RE  EE G   
Sbjct: 33  LPAGLIDPGEDPEEAARRELEEETGYEA 60

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 23/53 (43%), Positives = 28/53 (52%)

Query: 61  EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 113
            D  VL++    G G   P GG E  E+  EAA RE +EE G+   V  ELLG
Sbjct: 10  ADGRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLG 62

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 19/113 (16%)

Query: 58  INEEDLEVLVI--SSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE 114
           +   +  +L++  +++ G G    P G  EI E+++EAA RE  EE G+   V  ELL  
Sbjct: 16  LIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVL-ELLAV 74

Query: 115 WNFKSRAHNTDYQGYMFPLLVQDQLAEWPE--------KNVRSRKWMSVAEAR 159
           ++   R    D +G+    L     A  PE         +     W  + E  
Sbjct: 75  FDDPGR----DPRGHHVSFLF---FAAEPEGELLAGDGDDAAEVGWFPLDELP 120

Length = 145

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 18/77 (23%)

Query: 64  EVLVISSQKGKGMLFPKGGW-------EIDESIQEAALRETIEEAGVTGIVECELLG--E 114
           +VL+++ +KG G     GGW       E  E+ +E A+RE  EE G+T I   +L+G  +
Sbjct: 13  KVLLLNRKKGPGW----GGWNGPGGKVEPGETPEECAIRELKEETGLT-IDNLKLVGIIK 67

Query: 115 WNFKSRAHNTDYQGYMF 131
           + F       + +  +F
Sbjct: 68  FPFPGE----EERYGVF 80

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 38.0 bits (89), Expect = 9e-04
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 78  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE---W-------NFKSRAHNTDYQ 127
           FP+GG +  E  ++AALRE  EE G+      E++ E   W         K +     Y+
Sbjct: 31  FPQGGIDEGEDPEQAALRELEEETGLDP-DSVEIIAEIPDWLRYDLPPELKLKIWGGRYR 89

Query: 128 G 128
           G
Sbjct: 90  G 90

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 65  VLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNT 124
           +L++ +++     FP GG E  E   E  +RE  EE G T I   E  G +  +      
Sbjct: 13  ILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKP 72

Query: 125 DYQ-----GYMFPLLVQD-----QLAEWPEKNVRSRKWMSVAEA 158
           D        Y +   V       QL ++  +      W+++ EA
Sbjct: 73  DADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEA 116

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 81  GGW-EIDESIQEAALRETIEEAGVTGIVE 108
           GGW ++  S  E  ++E  EE G+   V 
Sbjct: 30  GGWADVGLSPAENVVKEVKEETGLDVKVR 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|239644 cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 61  EDLE-VLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG 102
           EDL+ VL++   K K   FPKG    DE   + A+RE  EE G
Sbjct: 11  EDLDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETG 53

Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.92
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.91
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.9
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.89
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.88
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.88
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.87
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.87
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.87
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.87
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.86
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.86
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.86
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.85
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.85
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.85
PLN02325	144	nudix hydrolase	99.85
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.85
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.85
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.85
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.84
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.84
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.84
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.84
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.84
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.84
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.84
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.83
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.83
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.83
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.83
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.82
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.82
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.82
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.81
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.81
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.81
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.8
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.8
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.8
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.8
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.8
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.8
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.79
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.79
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.78
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.78
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.77
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.77
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.77
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.76
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.76
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.75
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.74
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.74
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.74
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.74
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.72
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.72
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.72
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.71
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.71
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.71
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.7
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.7
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.7
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.69
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.67
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.67
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.66
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.65
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.65
PRK10707	190	putative NUDIX hydrolase; Provisional	99.64
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.63
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.6
PRK08999	312	hypothetical protein; Provisional	99.6
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.58
PLN03143	291	nudix hydrolase; Provisional	99.49
PLN02709	222	nudix hydrolase	99.47
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.46
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.44
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.41
PLN02791	770	Nudix hydrolase homolog	99.3
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	99.3
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.17
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.07
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	99.05
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.98
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.89
PLN02839	372	nudix hydrolase	98.6
KOG4195	275	consensus Transient receptor potential-related cha	98.49
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.4
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.29
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	97.74
COG4112	203	Predicted phosphoesterase (MutT family) [General f	97.67
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	97.42
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	96.73
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	96.17
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	96.13
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	95.5
PRK10880	350	adenine DNA glycosylase; Provisional	95.28
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	94.51
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	93.37
PRK13910	289	DNA glycosylase MutY; Provisional	89.68
PF14443	126	DBC1: DBC1	84.27

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.92  E-value=9.4e-24  Score=156.08  Aligned_cols=127  Identities=24%  Similarity=0.290  Sum_probs=100.6

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEee
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~  118 (196)
                      +.+|++|+++.+   +      ++.+|||+++++.+.|.||||+++.||++++||.||++||||+.+..... ++.+.+.
T Consensus         1 ~~~a~~ii~~~~---~------~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~   70 (131)
T cd03673           1 VLAAGGVVFRGS---D------GGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDP-LGTIRYW   70 (131)
T ss_pred             CeeEEEEEEEcc---C------CCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecce-EEEEEEe
Confidence            468899999975   2      45699999998878999999999999999999999999999999988776 7766655


Q ss_pred             eCCC--CceEEEEEEEEeeccccccC-CcCccceeEEEeHHHHHhhccchhHHHHHHHHH
Q 029277          119 SRAH--NTDYQGYMFPLLVQDQLAEW-PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  175 (196)
Q Consensus       119 ~~~~--~~~~~~~~f~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~  175 (196)
                      .+..  ......++|.+......... ++.|+.+++|++++++.+++.++..+.++..++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~  130 (131)
T cd03673          71 FSSSGKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELLRAAL  130 (131)
T ss_pred             ccCCCCCcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHHhh
Confidence            4431  23455666776655433322 456779999999999999999999999887664

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.91  E-value=3.8e-23  Score=152.62  Aligned_cols=118  Identities=40%  Similarity=0.642  Sum_probs=94.5

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeec-ceeeeeEEee
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE-CELLGEWNFK  118 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~-~~~l~~~~~~  118 (196)
                      ++||+|+++.+   +      +..++||+++.+.+.|.||||+++.|||+.+||+||++||||+.+... .. ++.+.+.
T Consensus         1 ~~~g~v~~~~~---~------~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~-l~~~~~~   70 (122)
T cd04666           1 LQAGAIPYRET---G------GEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRP-LGRFEYR   70 (122)
T ss_pred             CEEEEEEEEEc---C------CceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceE-EEEEEee
Confidence            36899999975   2      356899999887789999999999999999999999999999998776 66 8888766


Q ss_pred             eCCC--CceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhH
Q 029277          119 SRAH--NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWM  167 (196)
Q Consensus       119 ~~~~--~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~  167 (196)
                      .+..  .....+++|.+.........++.+..+++|++++++.+++.++++
T Consensus        71 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~~~~  121 (122)
T cd04666          71 KRSKNRPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEEPEL  121 (122)
T ss_pred             ecCCCCCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcCChhh
Confidence            5432  235566778777665444445556789999999999999988754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.90  E-value=5.3e-23  Score=152.35  Aligned_cols=139  Identities=48%  Similarity=0.825  Sum_probs=117.3

Q ss_pred             cccCC-CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecc
Q 029277           32 QRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC  109 (196)
Q Consensus        32 ~~~~~-~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~  109 (196)
                      |+|++ ++|.++|||+++.+   +      ...+||||.+.+ +..|.+|+|++|++|+..+||.||..||+|+......
T Consensus         1 qry~~~G~r~vagCi~~r~~---~------~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~   71 (145)
T KOG2839|consen    1 QRYDPAGFRLVAGCICYRSD---K------EKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGR   71 (145)
T ss_pred             CccCCCCcEEEEEeeeeeec---C------cceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeec
Confidence            57885 99999999999986   1      246899999887 4789999999999999999999999999999999888


Q ss_pred             eeeeeEEeeeCCCCceEEEEEEEEeeccccccCCcCc--cceeEEEeHHHHHhhccchhHHHHHHHHHHHHh
Q 029277          110 ELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKN--VRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT  179 (196)
Q Consensus       110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e--~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~  179 (196)
                      ...+.+++.+..+.+.+..+.|.+.+......+|+.+  ..+.+|+.++|+.+...+..++.++...++.+.
T Consensus        72 ~~~g~~~~~~~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~~~~m~~al~e~~~~l~  143 (145)
T KOG2839|consen   72 LLGGFEDFLSKKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQHKWMKAALEEFLQFLC  143 (145)
T ss_pred             cccchhhccChhhcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            5366665666555666777888888877777777766  799999999999999999999999888877664

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.89  E-value=4.8e-22  Score=147.23  Aligned_cols=125  Identities=25%  Similarity=0.273  Sum_probs=94.9

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE--
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN--  116 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~--  116 (196)
                      +.+||+|+|+.+   +      ++.++||+++++ +.|.+|||++++|||+.+||.||++||||+.+..... ++.+.  
T Consensus         2 ~~~~g~vi~~~~---~------~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~   70 (130)
T cd03428           2 ERSAGAIIYRRL---N------NEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFI-VLGFKET   70 (130)
T ss_pred             ceEEEEEEEEec---C------CCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhh-hccceeE
Confidence            357899999986   2      456899999887 8999999999999999999999999999999877665 43222  


Q ss_pred             eeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHH
Q 029277          117 FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL  174 (196)
Q Consensus       117 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~  174 (196)
                      +...........++|.+...........+|..++.|++++++.+++.++.++++++.+
T Consensus        71 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~  128 (130)
T cd03428          71 LNYQVRGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYEDLKAVLDKA  128 (130)
T ss_pred             EEccccCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHHcCchhHHHHHHHh
Confidence            2222122345566777776633222233678999999999999999999888888765

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.88  E-value=7.1e-22  Score=149.98  Aligned_cols=129  Identities=23%  Similarity=0.302  Sum_probs=92.9

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeeccee-ee--
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL-LG--  113 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~-l~--  113 (196)
                      .+.+|++++++.+            ++|||+++.. .+.|.+|||++|.|||+.+||+||++||||+.+...... ++  
T Consensus         6 ~~~~v~~vi~~~~------------~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~   73 (148)
T PRK09438          6 RPVSVLVVIYTPD------------LGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQ   73 (148)
T ss_pred             CceEEEEEEEeCC------------CeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccc
Confidence            4678888888863            2699998865 378999999999999999999999999999998322210 11  


Q ss_pred             ---eEEe------eeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHh
Q 029277          114 ---EWNF------KSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT  179 (196)
Q Consensus       114 ---~~~~------~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~  179 (196)
                         .+.+      .......+...++|.+........ ..+|+.++.|++++++.++...+.++++++.+..+++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~  147 (148)
T PRK09438         74 RSIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHERPV-VLTEHLAYQWLDAREAAALTKSWSNAEAIEQLVIRLA  147 (148)
T ss_pred             cccccccchhhhhccccccCCceeEEEEEecCCCCcc-ccCcccceeeCCHHHHHHHhcChhHHHHHHHHHHHhc
Confidence               1111      011111234556777765443222 2347899999999999999999999999998887764

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.88  E-value=1.9e-21  Score=143.15  Aligned_cols=117  Identities=22%  Similarity=0.205  Sum_probs=89.0

Q ss_pred             EEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEe
Q 029277           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF  117 (196)
Q Consensus        41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~  117 (196)
                      +|++|+++.+             +|||+++.+.   +.|.+|||+++.||++.+||+||++||||+.+..... ++.+.+
T Consensus         2 ~~~~ii~~~~-------------~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~   67 (128)
T cd04684           2 GAYAVIPRDG-------------KLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRR-LGSASR   67 (128)
T ss_pred             eeEEEEEeCC-------------EEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeeccee-eeEEEE
Confidence            4667777742             7999998874   8899999999999999999999999999999887776 776654


Q ss_pred             eeCCCC----ceEEEEEEEEeeccccc--cCCcCccceeEEEeHHHHHhhccchhHHHHH
Q 029277          118 KSRAHN----TDYQGYMFPLLVQDQLA--EWPEKNVRSRKWMSVAEARKVCQHWWMKEAL  171 (196)
Q Consensus       118 ~~~~~~----~~~~~~~f~~~~~~~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l  171 (196)
                      ......    .+...++|.+.......  ..+.++..++.|++++++......+....++
T Consensus        68 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~a~  127 (128)
T cd04684          68 YFYSPDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSPLVLWAV  127 (128)
T ss_pred             EEECCCCCeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCCHHHHHhh
Confidence            433221    24456677777665443  3345567899999999999888888666554

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.87  E-value=1.5e-21  Score=143.95  Aligned_cols=113  Identities=13%  Similarity=0.117  Sum_probs=86.5

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~  114 (196)
                      +|++|++++++.+            ++|||+++.+   .+.|.+|||++++||++.+||+||++||||+.+..... ++.
T Consensus         1 ~~~~~~~~i~~~~------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~-~~~   67 (125)
T cd04679           1 PRVGCGAAILRDD------------GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRL-LCV   67 (125)
T ss_pred             CceEEEEEEECCC------------CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceE-EEE
Confidence            5789999999863            2799999864   37899999999999999999999999999999887776 666


Q ss_pred             EEeeeCCCCceEEEEEEEEeeccccccC-CcCccceeEEEeHHHHHhhcc
Q 029277          115 WNFKSRAHNTDYQGYMFPLLVQDQLAEW-PEKNVRSRKWMSVAEARKVCQ  163 (196)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~  163 (196)
                      +.+.......+...++|.+......... ..+|..+++|++++++.+.+.
T Consensus        68 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~  117 (125)
T cd04679          68 VDHIIEEPPQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLT  117 (125)
T ss_pred             EeecccCCCCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhH
Confidence            5544433344556667777665433322 235779999999999987655

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.87  E-value=6e-21  Score=143.46  Aligned_cols=125  Identities=18%  Similarity=0.144  Sum_probs=89.0

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee-----
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG-----  113 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~-----  113 (196)
                      +..|++++++.+           .++|||+++++.+.|.+|||++++||++++||.||++||||+.+..... .+     
T Consensus         2 ~~~~~~~v~~~~-----------~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~~~   69 (138)
T cd03674           2 HFTASAFVVNPD-----------RGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRP-LSVLVDL   69 (138)
T ss_pred             cEEEEEEEEeCC-----------CCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCccccee-ccccccc
Confidence            467888888852           2489999988888999999999999999999999999999998654433 22     


Q ss_pred             -eEEee-eCCC---CceEEEEEEEEeecccccc-CCcCccceeEEEeHHHHHhhccchhHHHHHHHHH
Q 029277          114 -EWNFK-SRAH---NTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  175 (196)
Q Consensus       114 -~~~~~-~~~~---~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~  175 (196)
                       .+... ....   ...+...+|.+........ .+.+|..+++|++++++..+...+.++.++..++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~~  137 (138)
T cd03674          70 DVHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLVEKAL  137 (138)
T ss_pred             eeEeecCCCCCCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhccCCHHHHHHHHHHh
Confidence             11111 1111   1223344676665443322 2456778999999999988777788888887654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.87  E-value=5.5e-21  Score=142.34  Aligned_cols=124  Identities=22%  Similarity=0.195  Sum_probs=90.2

Q ss_pred             EEEEEEEeeccCCcccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeE--Ee
Q 029277           42 VGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW--NF  117 (196)
Q Consensus        42 vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~--~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~--~~  117 (196)
                      +|+|++...   +      ++.++||++|..  .|.|.+|||++++|||+.+||+||++||||+++..... ...+  .+
T Consensus         2 ~~~v~~~~~---~------~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~   71 (131)
T cd04695           2 VSGVLLRSL---D------KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYN-ADYLEQFY   71 (131)
T ss_pred             ceEEEEEEc---C------CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCcccccc-ccceeeEe
Confidence            577777765   2      345899999987  68999999999999999999999999999999764322 1111  12


Q ss_pred             eeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHH
Q 029277          118 KSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  176 (196)
Q Consensus       118 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  176 (196)
                      .. .....+...+|.+.........+++|+.+++|++++++.++...+..+.++..+..
T Consensus        72 ~~-~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~  129 (131)
T cd04695          72 EA-NDNRILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPGQRALYDHVWR  129 (131)
T ss_pred             ec-CCceEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhcCChhHHHHHHHHHh
Confidence            21 22223444566665543323334467899999999999999999999998887654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.87  E-value=8.2e-21  Score=141.49  Aligned_cols=109  Identities=21%  Similarity=0.345  Sum_probs=80.7

Q ss_pred             EEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccccc
Q 029277           64 EVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE  141 (196)
Q Consensus        64 ~vLLv~~~~~--~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  141 (196)
                      ++||+++.+.  +.|.+|||++++||++.+||.||++||||+.+..... ++.+.+..+.....+..++|.+........
T Consensus        12 ~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~   90 (134)
T cd03675          12 RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTAL-LGIYQWTAPDSDTTYLRFAFAAELLEHLPD   90 (134)
T ss_pred             EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceE-EEEEEeecCCCCeeEEEEEEEEEECCCCCC
Confidence            7999998754  5799999999999999999999999999999887766 666665544323344556677766543322


Q ss_pred             -CCcCccceeEEEeHHHHHhhc---cchhHHHHHHH
Q 029277          142 -WPEKNVRSRKWMSVAEARKVC---QHWWMKEALDR  173 (196)
Q Consensus       142 -~~~~e~~~~~W~~~~el~~~~---~~~~~~~~l~~  173 (196)
                       ..++++.++.|++++++..+.   ..+..++.+..
T Consensus        91 ~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~  126 (134)
T cd03675          91 QPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIED  126 (134)
T ss_pred             CCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHH
Confidence             234577899999999999886   34444444443

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.86  E-value=1.3e-20  Score=142.88  Aligned_cols=118  Identities=16%  Similarity=0.120  Sum_probs=86.4

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeec--cee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE--CEL  111 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~--~~~  111 (196)
                      .++++|+++|++.+            ++|||++|.+   .|.|.||||+++.|||+.+||+||++||||+.+...  .. 
T Consensus        10 ~p~v~v~~vI~~~~------------g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~-   76 (144)
T cd03430          10 TPLVSIDLIVENED------------GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAEL-   76 (144)
T ss_pred             CCeEEEEEEEEeCC------------CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceE-
Confidence            35788899998853            2899999864   478999999999999999999999999999998766  55 


Q ss_pred             eeeEEeeeCC------CCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhh-ccchhH
Q 029277          112 LGEWNFKSRA------HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKV-CQHWWM  167 (196)
Q Consensus       112 l~~~~~~~~~------~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~-~~~~~~  167 (196)
                      ++.+.+....      ...++...+|.+.........+..|..+++|++++++.+. ...+..
T Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~  139 (144)
T cd03430          77 LGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLADDDVHPNT  139 (144)
T ss_pred             EEEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcCCCcCHHH
Confidence            6665433221      1224455667666654433345567899999999999875 333433

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.86  E-value=1.2e-20  Score=145.37  Aligned_cols=122  Identities=18%  Similarity=0.165  Sum_probs=86.7

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeee--ccee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECEL  111 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~--~~~~  111 (196)
                      .+..+|++++++..            ++|||++|...   |.|.||||+++.|||+++||+||++||||+.+..  ... 
T Consensus        15 ~~~~~v~~vI~~~~------------g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~-   81 (159)
T PRK15434         15 TPLISLDFIVENSR------------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQF-   81 (159)
T ss_pred             CceEEEEEEEECCC------------CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceE-
Confidence            45677888887642            38999998642   7899999999999999999999999999999753  233 


Q ss_pred             eeeEEeeeCC---C---CceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhh-ccchhHHHHH
Q 029277          112 LGEWNFKSRA---H---NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKV-CQHWWMKEAL  171 (196)
Q Consensus       112 l~~~~~~~~~---~---~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~-~~~~~~~~~l  171 (196)
                      ++.+.+....   .   ..++..++|.+....+.....+.|+.+++|++++++... ...+.++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~  148 (159)
T PRK15434         82 YGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLASDNVHANSRAYF  148 (159)
T ss_pred             EEEEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhccccCHHHHHHh
Confidence            5554433221   1   224566677777665443334457899999999999876 3444444444

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.86  E-value=1.6e-20  Score=138.61  Aligned_cols=125  Identities=23%  Similarity=0.280  Sum_probs=95.7

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceee
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELL  112 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l  112 (196)
                      +|.+|++++++.+          +  +|||+++.+.     +.|.+|||+++.||++.+||+||+.||||+.+..... +
T Consensus         1 ~~~~v~~ii~~~~----------~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~-~   67 (134)
T PF00293_consen    1 WRRAVGVIIFNED----------G--KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLEL-L   67 (134)
T ss_dssp             EEEEEEEEEEETT----------T--EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEE-E
T ss_pred             CCCEEEEEEEeCC----------c--EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceeccccc-c
Confidence            4789999999974          2  8999999876     5799999999999999999999999999999966665 5


Q ss_pred             eeEEeeeCCCCc-eEEEEEEEEeecccc--ccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHH
Q 029277          113 GEWNFKSRAHNT-DYQGYMFPLLVQDQL--AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  175 (196)
Q Consensus       113 ~~~~~~~~~~~~-~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~  175 (196)
                      +...+....... ....++|.+......  ......|..+++|++++++.++...+....+++.+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~i~~~~  133 (134)
T PF00293_consen   68 GLFSYPSPSGDPEGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGRIRKIIPWLY  133 (134)
T ss_dssp             EEEEEEETTTESSEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTHHHHHHHHHH
T ss_pred             eeeeecccCCCcccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcchhhhhcccc
Confidence            655555554332 345556655554432  222334889999999999999998887777766543

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.85  E-value=1.6e-20  Score=140.31  Aligned_cols=111  Identities=22%  Similarity=0.180  Sum_probs=86.4

Q ss_pred             EEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccccc
Q 029277           64 EVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA  140 (196)
Q Consensus        64 ~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~  140 (196)
                      ++||+++.+   .+.|.+|||+++.||++.+||+||++||||+.+..... ++.+.+...........++|.+.......
T Consensus        13 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~   91 (137)
T cd03427          13 KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKL-VGIIKFPFPGEEERYGVFVFLATEFEGEP   91 (137)
T ss_pred             EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceE-EEEEEEEcCCCCcEEEEEEEEECCccccc
Confidence            799999876   47899999999999999999999999999999988777 77776655433344556667665443322


Q ss_pred             cCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHH
Q 029277          141 EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  176 (196)
Q Consensus       141 ~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  176 (196)
                      . ..++..+++|++++++..+...+..+.+++.+++
T Consensus        92 ~-~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  126 (137)
T cd03427          92 L-KESEEGILDWFDIDDLPLLPMWPGDREWLPLMLE  126 (137)
T ss_pred             C-CCCccccceEEcHhhcccccCCCCcHHHHHHHhC
Confidence            2 2445578999999999988777888888877663

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=1.5e-20  Score=139.34  Aligned_cols=120  Identities=21%  Similarity=0.159  Sum_probs=87.4

Q ss_pred             EEEEEEEEeeccCCcccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE--
Q 029277           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN--  116 (196)
Q Consensus        41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~--~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~--  116 (196)
                      ++.+++++..          ++++|||+++.+  .+.|.+|||+++.||++.+||.||++||||+.+..... +..+.  
T Consensus         3 ~~~v~~~~~~----------~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~   71 (129)
T cd04664           3 SVLVVPYRLT----------GEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTL-LDRGASI   71 (129)
T ss_pred             EEEEEEEEeC----------CCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEE-Eeecccc
Confidence            4567777763          345899999887  58899999999999999999999999999999755444 43322  


Q ss_pred             --eeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHH
Q 029277          117 --FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL  171 (196)
Q Consensus       117 --~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l  171 (196)
                        +...........++|.+..........++|+.+++|++++++.+++.++.++.++
T Consensus        72 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~  128 (129)
T cd04664          72 AFVEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLWESNRRAW  128 (129)
T ss_pred             cccccCCCceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHcChhhhhhh
Confidence              1122222334566777776544322334577899999999999999988777654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=2.6e-20  Score=136.08  Aligned_cols=112  Identities=22%  Similarity=0.273  Sum_probs=82.4

Q ss_pred             EEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEe
Q 029277           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF  117 (196)
Q Consensus        41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~  117 (196)
                      +|++++++.+             ++||+++.+   .+.|.+|||+++.||++++||.||++||||+.+..... ++.+.+
T Consensus         2 ~v~~ii~~~~-------------~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~   67 (122)
T cd04673           2 AVGAVVFRGG-------------RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRL-LTVVDV   67 (122)
T ss_pred             cEEEEEEECC-------------EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeecee-EEEEEE
Confidence            4667777642             799999875   36799999999999999999999999999999887776 666655


Q ss_pred             eeCCC----CceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhH
Q 029277          118 KSRAH----NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWM  167 (196)
Q Consensus       118 ~~~~~----~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~  167 (196)
                      .....    ......+.|.+....... .+..|+.+++|++++++.++...+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~~~~  120 (122)
T cd04673          68 IERDAAGRVEFHYVLIDFLCRYLGGEP-VAGDDALDARWVPLDELAALSLTEST  120 (122)
T ss_pred             eeccCCCccceEEEEEEEEEEeCCCcc-cCCcccceeEEECHHHHhhCcCCccc
Confidence            44321    123344556665544332 34467799999999999988766543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.85  E-value=2e-20  Score=141.86  Aligned_cols=122  Identities=17%  Similarity=0.127  Sum_probs=86.7

Q ss_pred             CCceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceee
Q 029277           36 KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELL  112 (196)
Q Consensus        36 ~~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l  112 (196)
                      ..++.+|++++++.+             +|||++|.+   .+.|.+|||+++.||++.+||+||++||||+.+..... +
T Consensus         6 ~~p~~~v~~vi~~~~-------------~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~-l   71 (144)
T PLN02325          6 PIPRVAVVVFLLKGN-------------SVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIEL-L   71 (144)
T ss_pred             CCCeEEEEEEEEcCC-------------EEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEE-E
Confidence            356788888888742             799999875   36899999999999999999999999999999988777 7


Q ss_pred             eeEEeeeCC--CCceEEEEEEEEeeccccc---cCCcCccceeEEEeHHHHHhhccchhHHHHHH
Q 029277          113 GEWNFKSRA--HNTDYQGYMFPLLVQDQLA---EWPEKNVRSRKWMSVAEARKVCQHWWMKEALD  172 (196)
Q Consensus       113 ~~~~~~~~~--~~~~~~~~~f~~~~~~~~~---~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~  172 (196)
                      +.+.+....  ...++..++|.+...+...   ....++..+++|+++++++..+..+ .+.++.
T Consensus        72 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~~p-~~~~~~  135 (144)
T PLN02325         72 TVTNNVFLEEPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLFWP-LEKLVG  135 (144)
T ss_pred             EEecceeecCCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhhHH-HHHHHH
Confidence            765443322  2234555666666543321   1122345789999999998765543 334443

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=2.3e-20  Score=137.42  Aligned_cols=116  Identities=11%  Similarity=0.097  Sum_probs=84.8

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEe
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF  117 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~  117 (196)
                      |++.|++++++++             ++||+++++.+.|.+|||+++.||++.+||.||++||||+.+..... ++.+..
T Consensus         1 p~~~v~~~i~~~~-------------~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~-~~~~~~   66 (123)
T cd04672           1 PKVDVRAAIFKDG-------------KILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKL-AAVDDR   66 (123)
T ss_pred             CcceEEEEEEECC-------------EEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEE-EEEecc
Confidence            4677888888753             79999998889999999999999999999999999999999866655 555433


Q ss_pred             eeCC---CCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHH
Q 029277          118 KSRA---HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMK  168 (196)
Q Consensus       118 ~~~~---~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~  168 (196)
                      ....   ...+...++|.+........ +.+|..+++|++++++.++.....+.
T Consensus        67 ~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~el~~l~~~~~~~  119 (123)
T cd04672          67 NKHHPPPQPYQVYKLFFLCEILGGEFK-PNIETSEVGFFALDDLPPLSEKRNTE  119 (123)
T ss_pred             ccccCCCCceEEEEEEEEEEecCCccc-CCCceeeeEEECHHHCcccccCCcch
Confidence            2211   11223445666666543222 33678999999999998876554433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=1.6e-20  Score=136.95  Aligned_cols=115  Identities=20%  Similarity=0.242  Sum_probs=85.6

Q ss_pred             EEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeee-ecceeeeeEEeee
Q 029277           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI-VECELLGEWNFKS  119 (196)
Q Consensus        41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~-~~~~~l~~~~~~~  119 (196)
                      +|.+++++.+            +++||+++...+.|.+|||+++.||++++||+||++||||+.+. .... ++.+.+..
T Consensus         2 ~~~~~i~~~~------------~~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~-~~~~~~~~   68 (120)
T cd04680           2 GARAVVTDAD------------GRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAEL-LGVYYHSA   68 (120)
T ss_pred             ceEEEEECCC------------CeEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccce-EEEEecCC
Confidence            4567777653            27999998877799999999999999999999999999999998 6666 66665443


Q ss_pred             CCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHH
Q 029277          120 RAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL  171 (196)
Q Consensus       120 ~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l  171 (196)
                      .  ......++|.+.........+++|..+++|++++++.+.+... .++.+
T Consensus        69 ~--~~~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~~~~~-~~~~~  117 (120)
T cd04680          69 S--GSWDHVIVFRARADTQPVIRPSHEISEARFFPPDALPEPTTPA-TRRRI  117 (120)
T ss_pred             C--CCceEEEEEEecccCCCccCCcccEEEEEEECHHHCcccCChH-HHHHh
Confidence            2  2234556777766544333455678999999999999876644 44433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.85  E-value=4e-20  Score=140.39  Aligned_cols=110  Identities=20%  Similarity=0.262  Sum_probs=75.8

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeee
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS  119 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~  119 (196)
                      .++|+|+++.+           +++|||+++...+.|+||||++|.|||+.+||+||++||||+.+..... ...+.  .
T Consensus         2 p~~gaii~~~~-----------~~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~-~~~~~--~   67 (145)
T cd03672           2 PVYGAIILNED-----------LDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID-KDDYI--E   67 (145)
T ss_pred             CeeEEEEEeCC-----------CCEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc-cceee--e
Confidence            36889999863           2379999987778999999999999999999999999999999765322 12221  1


Q ss_pred             CCCCceEEEEEEEEe-eccccc--cCCcCccceeEEEeHHHHHhhccc
Q 029277          120 RAHNTDYQGYMFPLL-VQDQLA--EWPEKNVRSRKWMSVAEARKVCQH  164 (196)
Q Consensus       120 ~~~~~~~~~~~f~~~-~~~~~~--~~~~~e~~~~~W~~~~el~~~~~~  164 (196)
                      ...... ..++|.+. ......  ..+.+|+.+++|++++++.++...
T Consensus        68 ~~~~~~-~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~  114 (145)
T cd03672          68 LIIRGQ-NVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNK  114 (145)
T ss_pred             cccCCc-EEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhh
Confidence            111122 23344333 222111  223457899999999999988644

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=3.6e-20  Score=137.18  Aligned_cols=111  Identities=25%  Similarity=0.210  Sum_probs=84.6

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~  114 (196)
                      +|.++++++++.+            +++||++|..   .+.|.+|||+++.||++.+||.||++||||+.+..... ++.
T Consensus         1 p~~~v~~ii~~~~------------~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~-~~~   67 (129)
T cd04678           1 PRVGVGVFVLNPK------------GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQF-LTV   67 (129)
T ss_pred             CceEEEEEEECCC------------CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEE-EEE
Confidence            5788999999863            2799998873   47899999999999999999999999999999877666 665


Q ss_pred             EEeeeCCCCceEEEEEEEEeeccccccC---CcCccceeEEEeHHHHHhh
Q 029277          115 WNFKSRAHNTDYQGYMFPLLVQDQLAEW---PEKNVRSRKWMSVAEARKV  161 (196)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~e~~~~~W~~~~el~~~  161 (196)
                      +.........++...+|.+.........   ..++..+++|++++++.++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  117 (129)
T cd04678          68 TNDVFEEEGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV  117 (129)
T ss_pred             EeEEeCCCCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence            5443333344566667777765433222   2345688999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=5.3e-20  Score=135.82  Aligned_cols=112  Identities=20%  Similarity=0.161  Sum_probs=84.0

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeee
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS  119 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~  119 (196)
                      +.|.+|+++++             +|||+++.+.+.|.+|||+++.||++.+||.||+.||||+.+..... ++.+....
T Consensus         2 ~~v~~vi~~~~-------------~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~   67 (126)
T cd04688           2 VRAAAIIIHNG-------------KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRL-LGVVENIF   67 (126)
T ss_pred             eEEEEEEEECC-------------EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceeccee-eEEEEEee
Confidence            35667777742             79999887778899999999999999999999999999999888776 66654322


Q ss_pred             C--CCCceEEEEEEEEeeccccccC-------CcCccceeEEEeHHHHHhhccch
Q 029277          120 R--AHNTDYQGYMFPLLVQDQLAEW-------PEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       120 ~--~~~~~~~~~~f~~~~~~~~~~~-------~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      .  ....+...++|.+.........       ++.++.++.|++++++..+...|
T Consensus        68 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p  122 (126)
T cd04688          68 TYNGKPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYP  122 (126)
T ss_pred             ccCCcccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCccCC
Confidence            2  2223455678877776543321       34577999999999998765544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=7.2e-20  Score=135.00  Aligned_cols=119  Identities=18%  Similarity=0.135  Sum_probs=84.3

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEe
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF  117 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~  117 (196)
                      ..+|++++++.+            +++||+++.. .+.|.+|||+++.|||+++||+||++||||+.+..... ++...+
T Consensus         2 ~~~v~~~i~~~~------------~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~   68 (125)
T cd04696           2 LVTVGALIYAPD------------GRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKF-AMVQEA   68 (125)
T ss_pred             ccEEEEEEECCC------------CCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccce-EEEEEE
Confidence            356788888753            2799998754 47899999999999999999999999999999877665 444333


Q ss_pred             eeCC---CCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHH
Q 029277          118 KSRA---HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL  171 (196)
Q Consensus       118 ~~~~---~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l  171 (196)
                      ....   ...++..+.|.+..... ...+.+|..+++|++++++.++...+...+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~  124 (125)
T cd04696          69 IFSEEFHKPAHFVLFDFFARTDGT-EVTPNEEIVEWEWVTPEEALDYPLNSFTRLLL  124 (125)
T ss_pred             eccCCCCCccEEEEEEEEEEecCC-cccCCcccceeEEECHHHHhcCCCCHHHHHHh
Confidence            2211   11233445565554432 22344578999999999999887776555443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=5.2e-20  Score=136.29  Aligned_cols=113  Identities=19%  Similarity=0.260  Sum_probs=83.2

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN  116 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~--~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~  116 (196)
                      |.+|++|+++.+             +|||+++.+.  +.|.+|||+++.|||+++||+||+.||||+.+..... +..+.
T Consensus         1 r~~a~~iv~~~~-------------~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~-~~~~~   66 (128)
T cd04687           1 RNSAKAVIIKND-------------KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPL-LFVRE   66 (128)
T ss_pred             CcEEEEEEEECC-------------EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcE-EEEEE
Confidence            567888888743             7999998644  5699999999999999999999999999999987665 55554


Q ss_pred             eeeCC------CCceEEEEEEEEeeccccc----cCCcCccceeEEEeHHHHHhhccch
Q 029277          117 FKSRA------HNTDYQGYMFPLLVQDQLA----EWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       117 ~~~~~------~~~~~~~~~f~~~~~~~~~----~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      +....      ...+...++|.+.......    ..++.+..+++|++++++.++..++
T Consensus        67 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p  125 (128)
T cd04687          67 YIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYP  125 (128)
T ss_pred             EeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccC
Confidence            43221      1234556677777654321    1233445789999999998886655

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=5e-20  Score=135.31  Aligned_cols=121  Identities=20%  Similarity=0.177  Sum_probs=87.6

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE--
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN--  116 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~--  116 (196)
                      |..|++|+++.+            +++||++|...+.|.||||+++.||++++||.||++||||+.+..... ++.+.  
T Consensus         2 ~~~v~~ii~~~~------------~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~-~~~~~~~   68 (129)
T cd04676           2 LPGVTAVVRDDE------------GRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGL-VGIYTGP   68 (129)
T ss_pred             cceEEEEEECCC------------CeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEE-EEEeecc
Confidence            567788887752            379999988778999999999999999999999999999999876554 43322  


Q ss_pred             ---eeeCCCC-ceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHH
Q 029277          117 ---FKSRAHN-TDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALD  172 (196)
Q Consensus       117 ---~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~  172 (196)
                         +...... .....++|.+.........+..|..+++|++++++..+..++.++.+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~  128 (129)
T cd04676          69 VHVVTYPNGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLRID  128 (129)
T ss_pred             cceeecCCCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccccCCHhHHHHhc
Confidence               1111111 1334455655554433323455778999999999999988887777664

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=7.5e-20  Score=134.83  Aligned_cols=107  Identities=20%  Similarity=0.144  Sum_probs=79.2

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEee
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~  118 (196)
                      ++.|++++++.+             ++||+++...+.|.+|||+++.||++.+||.||++||||+.+..... ++.+.+.
T Consensus         1 ~~~~~~vi~~~~-------------~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-l~~~~~~   66 (125)
T cd04689           1 HLRARAIVRAGN-------------KVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRF-LGAIENQ   66 (125)
T ss_pred             CeEEEEEEEeCC-------------EEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEE-EEEEeee
Confidence            356788888643             79999988778999999999999999999999999999999887776 7765543


Q ss_pred             eCCCC--ceEEEEEEEEeecccc---ccCCcCccceeEEEeHHHHH
Q 029277          119 SRAHN--TDYQGYMFPLLVQDQL---AEWPEKNVRSRKWMSVAEAR  159 (196)
Q Consensus       119 ~~~~~--~~~~~~~f~~~~~~~~---~~~~~~e~~~~~W~~~~el~  159 (196)
                      .....  .+...++|.+......   ....++++.+++|++++++.
T Consensus        67 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~  112 (125)
T cd04689          67 WHEKGVRTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLS  112 (125)
T ss_pred             eccCCceEEEEEEEEEEEcccccccCCccCccceEEEEEccHHHcc
Confidence            33222  2344566766654321   12233457899999999964

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.84  E-value=6.4e-20  Score=138.67  Aligned_cols=118  Identities=18%  Similarity=0.152  Sum_probs=87.8

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~  113 (196)
                      -+..+|++++++.+            .++||++++..   +.|+||||++++||++++||+||++||||+.+..... ++
T Consensus        11 ~~~~av~~vv~~~~------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-~~   77 (142)
T cd04700          11 VEARAAGAVILNER------------NDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKF-LG   77 (142)
T ss_pred             eeeeeEEEEEEeCC------------CcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEE-EE
Confidence            34578888998853            26999987642   6799999999999999999999999999999988776 77


Q ss_pred             eEEeeeCCCCceEEEEEEEEeecccc-ccCCcCccceeEEEeHHHHHhhccchhHH
Q 029277          114 EWNFKSRAHNTDYQGYMFPLLVQDQL-AEWPEKNVRSRKWMSVAEARKVCQHWWMK  168 (196)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~~  168 (196)
                      .+.+.... ......++|.+...... .....+|+.+++|++++++.+++..+.+.
T Consensus        78 ~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~i~  132 (142)
T cd04700          78 TYLGRFDD-GVLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQGQLR  132 (142)
T ss_pred             EEEEEcCC-CcEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcccccccc
Confidence            66544432 22334567777664332 22234678999999999999998776543

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=1e-19  Score=134.47  Aligned_cols=113  Identities=22%  Similarity=0.230  Sum_probs=77.5

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN  116 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~--~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~  116 (196)
                      +..|++++++.+            ++|||++++.  .+.|.+|||+++.|||+++||.||++||||+.+..... ++...
T Consensus         2 ~~~~~~~v~~~~------------~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~-~~~~~   68 (127)
T cd04670           2 TVGVGGLVLNEK------------NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSV-VGFRH   68 (127)
T ss_pred             eeEEEEEEEcCC------------CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEE-EEEEe
Confidence            467888888753            2799999877  58999999999999999999999999999999876654 44333


Q ss_pred             eeeCCCCceEEEEEEEEeecc--ccccCCcCccceeEEEeHHHHHhhccchh
Q 029277          117 FKSRAHNTDYQGYMFPLLVQD--QLAEWPEKNVRSRKWMSVAEARKVCQHWW  166 (196)
Q Consensus       117 ~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~~~~  166 (196)
                      +.... .. ...++|.+....  .......+|..+++|++++++.+......
T Consensus        69 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~  118 (127)
T cd04670          69 AHPGA-FG-KSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSE  118 (127)
T ss_pred             cCCCC-cC-ceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHH
Confidence            22111 11 112234443332  11122345678899999999976644443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=6.3e-20  Score=135.91  Aligned_cols=121  Identities=21%  Similarity=0.202  Sum_probs=84.6

Q ss_pred             EEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEe
Q 029277           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF  117 (196)
Q Consensus        41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~  117 (196)
                      +|++++++.+            +++||+++.+.   +.|.+|||+++.|||+.+||.||++||||+.+..... ++.+..
T Consensus         3 av~~~i~~~~------------~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~   69 (130)
T cd04681           3 AVGVLILNED------------GELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSY-LFSLPN   69 (130)
T ss_pred             eEEEEEEcCC------------CcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeE-EEeecc
Confidence            5666776643            27999988643   6899999999999999999999999999999876665 555432


Q ss_pred             eeCCCC--ceEEEEEEEEeeccccccCCcCccceeEEEeHHHHH-hhccchhHHHHHHHH
Q 029277          118 KSRAHN--TDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEAR-KVCQHWWMKEALDRL  174 (196)
Q Consensus       118 ~~~~~~--~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~-~~~~~~~~~~~l~~~  174 (196)
                      ..+...  .....++|.+...........+|+.+++|++++++. ..+.++..+.+++.+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~~~  129 (130)
T cd04681          70 TYPYGGMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVERW  129 (130)
T ss_pred             eeeeCCceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHCCcccCCcHHHHHHHHhh
Confidence            222111  223334566666543333334577999999999985 456667777777653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.83  E-value=7.2e-20  Score=139.03  Aligned_cols=113  Identities=21%  Similarity=0.230  Sum_probs=86.7

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~  113 (196)
                      .++..+++++.+.+             +|||++|...   |.|.||||++|.|||+++||.||++||||+++....+ ++
T Consensus         8 ~p~~~v~~~i~~~~-------------~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~-~~   73 (145)
T COG1051           8 TPLVAVGALIVRNG-------------RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLEL-LA   73 (145)
T ss_pred             CcceeeeEEEEeCC-------------EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeE-EE
Confidence            56788888888863             7999999876   7899999999999999999999999999999888888 77


Q ss_pred             eEEeeeCCCCceEEEEEEEEeeccc-cccCCcCccceeEEEeHHHHHhhcc
Q 029277          114 EWNFKSRAHNTDYQGYMFPLLVQDQ-LAEWPEKNVRSRKWMSVAEARKVCQ  163 (196)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~e~~~~~W~~~~el~~~~~  163 (196)
                      +++....+...++..++|.+..... ......++...+.|++++++..+..
T Consensus        74 v~~~~~rd~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~~~  124 (145)
T COG1051          74 VFDDPGRDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPELPL  124 (145)
T ss_pred             EecCCCCCCceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHcccccc
Confidence            7776555434455555555554333 2222223668999999999987643

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.83  E-value=3e-19  Score=135.57  Aligned_cols=123  Identities=18%  Similarity=0.231  Sum_probs=85.3

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee--
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE--  114 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~--  114 (196)
                      +|.+|++|+++.+            +++||+++.+. +.|.+|||++++||++.+||.||++||||+.+..... ++.  
T Consensus         2 ~~~~v~~ii~~~~------------~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~-l~~~~   68 (147)
T cd03671           2 YRPNVGVVLFNED------------GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEI-IAEIP   68 (147)
T ss_pred             CCceEEEEEEeCC------------CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEE-EEEcC
Confidence            5788999999853            27999998876 5999999999999999999999999999999766554 443  


Q ss_pred             --EEeeeCCC---------CceEEEEEEEEeecc--cc-ccC--CcCccceeEEEeHHHHHhhccchhHHHHHHHH
Q 029277          115 --WNFKSRAH---------NTDYQGYMFPLLVQD--QL-AEW--PEKNVRSRKWMSVAEARKVCQHWWMKEALDRL  174 (196)
Q Consensus       115 --~~~~~~~~---------~~~~~~~~f~~~~~~--~~-~~~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~  174 (196)
                        +.|..+..         ......++|.+....  .. ...  +++|+.+++|++++++.+++.. ..+.++..+
T Consensus        69 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~-~~~~~~~~~  143 (147)
T cd03671          69 DWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVP-FKRPVYEAV  143 (147)
T ss_pred             CeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchh-hhHHHHHHH
Confidence              22332211         011233455554433  11 111  2457899999999999998753 444555443

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=1.8e-19  Score=133.60  Aligned_cols=114  Identities=21%  Similarity=0.173  Sum_probs=79.2

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE-
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN-  116 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~-  116 (196)
                      ++..|++++++.+            .++||+++.+.+.|.||||+++.||++.+||.||++||||+.+..... ++.+. 
T Consensus         6 ~~~~~~~~v~~~~------------~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~-~~~~~~   72 (132)
T cd04677           6 ILVGAGVILLNEQ------------GEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELEL-LGVYSG   72 (132)
T ss_pred             cccceEEEEEeCC------------CCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEE-EEEecC
Confidence            3456667777653            279999988778899999999999999999999999999999887666 54432 


Q ss_pred             ---eeeCCCCc-eEEE-EEEEEeeccccccCCcCccceeEEEeHHHHHhhccc
Q 029277          117 ---FKSRAHNT-DYQG-YMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQH  164 (196)
Q Consensus       117 ---~~~~~~~~-~~~~-~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~  164 (196)
                         +....... .... ++|...........+.+|..+++|++++++.+++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~  125 (132)
T cd04677          73 KEFYVKPNGDDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELINP  125 (132)
T ss_pred             CceeecCCCCcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchhH
Confidence               21111111 2223 333333333322345567799999999999877654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=2.1e-19  Score=132.10  Aligned_cols=106  Identities=24%  Similarity=0.204  Sum_probs=76.6

Q ss_pred             EEEEEEEEeeccCCcccccCCceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEee
Q 029277           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (196)
Q Consensus        41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~--~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~  118 (196)
                      .|++|+++.+            ++|||+++.+.  +.|.||||+++.|||+.+||+||++||||+.+..... ++.+.+ 
T Consensus         2 ~~~~ii~~~~------------~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~-~~~~~~-   67 (121)
T cd04669           2 RASIVIINDQ------------GEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEI-FLIVNQ-   67 (121)
T ss_pred             ceEEEEEeCC------------CEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeE-EEEEee-
Confidence            4677777752            27999998654  5799999999999999999999999999999977766 665544 


Q ss_pred             eCCCCceEEEEEEEEeeccccccC---------CcCccceeEEEeHHHHHhhccch
Q 029277          119 SRAHNTDYQGYMFPLLVQDQLAEW---------PEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       119 ~~~~~~~~~~~~f~~~~~~~~~~~---------~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                       .  .  ...++|.+.........         .+.+..++.|++++++..+...|
T Consensus        68 -~--~--~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p  118 (121)
T cd04669          68 -N--G--RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP  118 (121)
T ss_pred             -C--C--cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence             1  1  12456666544321110         12335679999999999876554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.82  E-value=3.5e-19  Score=134.12  Aligned_cols=108  Identities=16%  Similarity=0.128  Sum_probs=72.5

Q ss_pred             EEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee-eE----E-eeeCCCCc--eEEE-E
Q 029277           64 EVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG-EW----N-FKSRAHNT--DYQG-Y  129 (196)
Q Consensus        64 ~vLLv~~~~~-----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~-~~----~-~~~~~~~~--~~~~-~  129 (196)
                      +|||++|...     |.|.+|||++++|||+.+||.||++||||+.+..... .. .+    . ........  .+.. .
T Consensus        16 ~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (141)
T PRK15472         16 AYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEI-TPWTFRDDIRTKTYADGRKEEIYMIYL   94 (141)
T ss_pred             EEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeee-ccccccccceeEEecCCCceeEEEEEE
Confidence            7999997643     7899999999999999999999999999998754332 10 11    0 11111111  1111 2


Q ss_pred             EEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHH
Q 029277          130 MFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDR  173 (196)
Q Consensus       130 ~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~  173 (196)
                      +|.+..... ...+.+|+.+++|++++++.++...+..+.+++.
T Consensus        95 ~~~~~~~~~-~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~~~~  137 (141)
T PRK15472         95 IFDCVSANR-DVKINEEFQDYAWVKPEDLVHYDLNVATRKTLRL  137 (141)
T ss_pred             EEEeecCCC-cccCChhhheEEEccHHHhccccccHHHHHHHHH
Confidence            233332222 2223467899999999999999888887777754

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=2.6e-19  Score=129.72  Aligned_cols=99  Identities=20%  Similarity=0.225  Sum_probs=74.5

Q ss_pred             EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccccccCC
Q 029277           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP  143 (196)
Q Consensus        64 ~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  143 (196)
                      ++||+++.+ +.|.+|||++++||++.+||.||++||||+.+..... ++.+.  .    .....++|.+.........+
T Consensus        12 ~vLlv~r~~-~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~--~----~~~~~~~f~~~~~~~~~~~~   83 (112)
T cd04667          12 RVLLVRKSG-SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLY-LFHVD--G----GSTRHHVFVASVPPSAQPKP   83 (112)
T ss_pred             EEEEEEcCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEE-EEEEe--C----CCEEEEEEEEEcCCcCCCCC
Confidence            799999865 8899999999999999999999999999999765554 44332  1    12334566666554333335


Q ss_pred             cCccceeEEEeHHHHHhhccchhHHHH
Q 029277          144 EKNVRSRKWMSVAEARKVCQHWWMKEA  170 (196)
Q Consensus       144 ~~e~~~~~W~~~~el~~~~~~~~~~~~  170 (196)
                      .+|+.+++|++++++.++...+..+.+
T Consensus        84 ~~e~~~~~W~~~~el~~~~~~~~~~~~  110 (112)
T cd04667          84 SNEIADCRWLSLDALGDLNASAATRLI  110 (112)
T ss_pred             chheeEEEEecHHHhhhcccchhhhhh
Confidence            567899999999999998877655543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=3.3e-19  Score=132.54  Aligned_cols=113  Identities=19%  Similarity=0.175  Sum_probs=83.4

Q ss_pred             CCceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceee
Q 029277           36 KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELL  112 (196)
Q Consensus        36 ~~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l  112 (196)
                      ..++.+|++|+++.+             ++||+++..   .|.|.+|||+++.||++++||.||++||||+.+..... +
T Consensus        10 ~~~~~~v~~ii~~~~-------------~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~-~   75 (130)
T cd04511          10 QNPKIIVGCVPEWEG-------------KVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGL-Y   75 (130)
T ss_pred             CCCcEEEEEEEecCC-------------EEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeE-E
Confidence            356778888888743             799999853   47899999999999999999999999999999877665 6


Q ss_pred             eeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHH-hhccchhH
Q 029277          113 GEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEAR-KVCQHWWM  167 (196)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~-~~~~~~~~  167 (196)
                      +.+..  +  ......++|.+...... ..+..|..+.+|++++++. +.+.++..
T Consensus        76 ~~~~~--~--~~~~~~~~f~~~~~~~~-~~~~~e~~~~~~~~~~~l~~~~l~~~~~  126 (130)
T cd04511          76 AVYSV--P--HISQVYMFYRARLLDLD-FAPGPESLEVRLFTEEEIPWDELAFPTV  126 (130)
T ss_pred             EEEec--C--CceEEEEEEEEEEcCCc-ccCCcchhceEEECHHHCCchhcccccc
Confidence            55543  2  22345667777775432 2244567899999999996 33444433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=2.9e-19  Score=130.09  Aligned_cols=99  Identities=17%  Similarity=0.227  Sum_probs=74.6

Q ss_pred             EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeee--cceeeeeEEeeeCCC-CceEEEEEEEEeeccccc
Q 029277           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRAH-NTDYQGYMFPLLVQDQLA  140 (196)
Q Consensus        64 ~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~--~~~~l~~~~~~~~~~-~~~~~~~~f~~~~~~~~~  140 (196)
                      ++||++++..+.|.+|||++++||++++||.||++||||+.+..  ... ++.+.+..... ......++|.+....  .
T Consensus        13 ~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~--~   89 (118)
T cd04690          13 RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEY-LGTFRAPAANEPGVDVRATVYVAELTG--E   89 (118)
T ss_pred             eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEE-EEEEecccccCCCcEEEEEEEEEcccC--C
Confidence            89999988778999999999999999999999999999999876  555 66555432221 234456677766554  2


Q ss_pred             cCCcCccceeEEEeHHHHHhhccch
Q 029277          141 EWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       141 ~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      ..+.+++.+++|++++++......+
T Consensus        90 ~~~~~e~~~~~W~~~~e~~~~~~~~  114 (118)
T cd04690          90 PVPAAEIEEIRWVDYDDPADDRLAP  114 (118)
T ss_pred             cCCCchhhccEEecHHHccccccCc
Confidence            3345678999999999986655444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=3.9e-19  Score=131.32  Aligned_cols=104  Identities=21%  Similarity=0.230  Sum_probs=75.9

Q ss_pred             EEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEe
Q 029277           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF  117 (196)
Q Consensus        41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~  117 (196)
                      +|++++++.+            ++|||+++.+.   +.|.+|||+++.||++++||+||++||||+.+..... ++....
T Consensus         2 ~~~~vv~~~~------------~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~-~~~~~~   68 (123)
T cd04671           2 IVAAVILNNQ------------GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTL-LSVEEQ   68 (123)
T ss_pred             EEEEEEEcCC------------CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceE-EEEEcc
Confidence            5677777743            27999997643   6899999999999999999999999999999987776 554321


Q ss_pred             eeCCCCceEEEEEEEEeecccccc---CCcCccceeEEEeHHHHHhhc
Q 029277          118 KSRAHNTDYQGYMFPLLVQDQLAE---WPEKNVRSRKWMSVAEARKVC  162 (196)
Q Consensus       118 ~~~~~~~~~~~~~f~~~~~~~~~~---~~~~e~~~~~W~~~~el~~~~  162 (196)
                           ......++|.+...++...   .++.++.+++|++++++...+
T Consensus        69 -----~~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~~  111 (123)
T cd04671          69 -----GGSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPLPL  111 (123)
T ss_pred             -----CCeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCcc
Confidence                 1234556777765543221   133466799999999995434

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=1e-18  Score=130.26  Aligned_cols=107  Identities=22%  Similarity=0.308  Sum_probs=74.6

Q ss_pred             EEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceee-eecceeeeeEEeee
Q 029277           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTG-IVECELLGEWNFKS  119 (196)
Q Consensus        41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~-~~~~~~l~~~~~~~  119 (196)
                      +|++|+++.+             +|||+++.+.+.|.||||++++||++.+||+||++||||+.+ ..... ++.+....
T Consensus         2 ~~~~ii~~~~-------------~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~-l~~~~~~~   67 (131)
T cd04686           2 AVRAIILQGD-------------KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEK-FGTYTERR   67 (131)
T ss_pred             cEEEEEEECC-------------EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceE-EEEEEeec
Confidence            5778888853             799999887788999999999999999999999999999986 44444 56554211


Q ss_pred             C--CC---CceEEEEEEEEeeccccc--cCCcCc---cceeEEEeHHHHHhh
Q 029277          120 R--AH---NTDYQGYMFPLLVQDQLA--EWPEKN---VRSRKWMSVAEARKV  161 (196)
Q Consensus       120 ~--~~---~~~~~~~~f~~~~~~~~~--~~~~~e---~~~~~W~~~~el~~~  161 (196)
                      .  ..   ..+...++|.+.......  .....+   ...+.|++++++.+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~  119 (131)
T cd04686          68 PWRKPDADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH  119 (131)
T ss_pred             cccCCCCceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence            1  11   113345677777654321  111112   146899999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=6.7e-19  Score=128.65  Aligned_cols=98  Identities=19%  Similarity=0.168  Sum_probs=69.2

Q ss_pred             EEEEEEEcC----CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeee--cceeeeeEEeeeCCCCceEEEEEEEEeecc
Q 029277           64 EVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRAHNTDYQGYMFPLLVQD  137 (196)
Q Consensus        64 ~vLLv~~~~----~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~  137 (196)
                      +|||++|.+    .+.|.+|||+++.||++.+||+||++||||+.+..  ... ++.+.+.... ......++|.+....
T Consensus        12 ~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~-~~~~~~~~~~-~~~~~~~~f~~~~~~   89 (120)
T cd04683          12 EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRL-AHTMHRRTED-IESRIGLFFTVRRWS   89 (120)
T ss_pred             EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEE-EEEEEecCCC-CceEEEEEEEEEeec
Confidence            799999765    36899999999999999999999999999999763  333 4444332221 233445566665433


Q ss_pred             cccc-CCcCccceeEEEeHHHHHhhcc
Q 029277          138 QLAE-WPEKNVRSRKWMSVAEARKVCQ  163 (196)
Q Consensus       138 ~~~~-~~~~e~~~~~W~~~~el~~~~~  163 (196)
                      .... ...+|+.+++|++++++...+.
T Consensus        90 ~~~~~~~~~e~~~~~W~~~~~l~~~~~  116 (120)
T cd04683          90 GEPRNCEPDKCAELRWFPLDALPDDTV  116 (120)
T ss_pred             CccccCCCCcEeeEEEEchHHCcchhc
Confidence            3222 2335678999999999976653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=5.8e-19  Score=129.69  Aligned_cols=96  Identities=20%  Similarity=0.072  Sum_probs=69.5

Q ss_pred             EEEEEEEcCC------CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecc
Q 029277           64 EVLVISSQKG------KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD  137 (196)
Q Consensus        64 ~vLLv~~~~~------~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~  137 (196)
                      ++||++|.+.      |.|.||||+++.||++++||.||++||||+.+..... .....+...  ......++|.+....
T Consensus        13 ~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~--~~~~~~~~f~~~~~~   89 (122)
T cd04682          13 RLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRI-PWFRVYPSA--SPPGTEHVFVVPLTA   89 (122)
T ss_pred             EEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCccccccc-ceeEecccC--CCCceEEEEEEEEec
Confidence            7999998643      7899999999999999999999999999999865333 222222222  223445667666554


Q ss_pred             cc-ccCCcCccceeEEEeHHHHHhhc
Q 029277          138 QL-AEWPEKNVRSRKWMSVAEARKVC  162 (196)
Q Consensus       138 ~~-~~~~~~e~~~~~W~~~~el~~~~  162 (196)
                      .. .....+|+.+++|++++++.+..
T Consensus        90 ~~~~~~~~~E~~~~~W~~~~el~~~~  115 (122)
T cd04682          90 REDAILFGDEGQALRLMTVEEFLAHE  115 (122)
T ss_pred             CCCccccCchhheeecccHHHHhhcc
Confidence            32 33445677999999999997654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=7.5e-19  Score=128.48  Aligned_cols=94  Identities=21%  Similarity=0.208  Sum_probs=68.4

Q ss_pred             EEEEEEEcC-----CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccc
Q 029277           64 EVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ  138 (196)
Q Consensus        64 ~vLLv~~~~-----~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  138 (196)
                      +|||++|.+     .+.|.||||+++.||++++||+||++||||+.+..... ++.+.+..  . .....++|.+.....
T Consensus        12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~--~-~~~~~~~~~~~~~~~   87 (117)
T cd04691          12 KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTY-LCSLYHPT--S-ELQLLHYYVVTFWQG   87 (117)
T ss_pred             EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceE-EEEEeccC--C-CeEEEEEEEEEEecC
Confidence            799999853     26899999999999999999999999999999654444 44443221  1 223455666654433


Q ss_pred             cccCCcCccceeEEEeHHHHHhhcc
Q 029277          139 LAEWPEKNVRSRKWMSVAEARKVCQ  163 (196)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~el~~~~~  163 (196)
                      ..  ..+|..++.|+++++++....
T Consensus        88 ~~--~~~E~~~~~W~~~~~l~~~~~  110 (117)
T cd04691          88 EI--PAQEAAEVHWMTANDIVLASE  110 (117)
T ss_pred             CC--CcccccccEEcCHHHcchhhh
Confidence            22  236789999999999986654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.80  E-value=1.1e-18  Score=130.16  Aligned_cols=110  Identities=17%  Similarity=0.089  Sum_probs=77.2

Q ss_pred             eEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccccc
Q 029277           63 LEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA  140 (196)
Q Consensus        63 ~~vLLv~~~~--~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~  140 (196)
                      .++||+++.+  .+.|.+|||+++.||++.+||.||++||||+.+..... ++.+.+...    ....++|.+.......
T Consensus        12 ~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~-l~~~~~~~~----~~~~~~f~~~~~~~~~   86 (131)
T cd03429          12 DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRY-VGSQPWPFP----SSLMLGFTAEADSGEI   86 (131)
T ss_pred             CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEE-EeecCCCCC----ceEEEEEEEEEcCCcc
Confidence            4899999876  47899999999999999999999999999999877666 554333221    2344566666554322


Q ss_pred             cCCcCccceeEEEeHHHHHhh----ccchhHHHHHHHHHHH
Q 029277          141 EWPEKNVRSRKWMSVAEARKV----CQHWWMKEALDRLVMR  177 (196)
Q Consensus       141 ~~~~~e~~~~~W~~~~el~~~----~~~~~~~~~l~~~~~~  177 (196)
                      ....+|+.+++|++++++.++    +..+........++..
T Consensus        87 ~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~~~~~~~~  127 (131)
T cd03429          87 VVDDDELEDARWFSRDEVRAAGEGLPELPPPGSIARQLIEA  127 (131)
T ss_pred             cCCchhhhccEeecHHHHhhcccCCccCCCcchHHHHHHHH
Confidence            223457789999999999874    3333334444444443

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.79  E-value=3.4e-18  Score=127.35  Aligned_cols=112  Identities=15%  Similarity=0.064  Sum_probs=83.1

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (196)
                      +|||++|.++    |.|.||||+++.||++.+||+||+.||||+.+..... ++.+.+..+.  .....++|.+......
T Consensus        16 ~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~   92 (135)
T PRK10546         16 KILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEY-VASHQREVSG--RRIHLHAWHVPDFHGE   92 (135)
T ss_pred             EEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCcccccee-EEEEEEecCC--cEEEEEEEEEEEecCc
Confidence            7999988653    6799999999999999999999999999999877665 6655554332  2334455555443221


Q ss_pred             ccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhc
Q 029277          140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS  180 (196)
Q Consensus       140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~  180 (196)
                      .  ...+..+++|++++++..+...+.++.+++.+.+..+.
T Consensus        93 ~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~~  131 (135)
T PRK10546         93 L--QAHEHQALVWCTPEEALRYPLAPADIPLLEAFMALRAA  131 (135)
T ss_pred             c--cccccceeEEcCHHHcccCCCCcCcHHHHHHHHHhhcc
Confidence            1  22356789999999999988888888888877766443

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.79  E-value=2.3e-18  Score=128.73  Aligned_cols=112  Identities=20%  Similarity=0.101  Sum_probs=81.2

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeE
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW  115 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~  115 (196)
                      .+|++++++.+            +++||+++.+.    +.|.+|||+++.||++.+||+||++||||+.+..... ++.+
T Consensus         3 ~~v~v~~~~~~------------~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~-~~~~   69 (137)
T cd03424           3 DAVAVLPYDDD------------GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEK-LGSF   69 (137)
T ss_pred             CEEEEEEEcCC------------CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEE-EeeE
Confidence            46777888763            37999986542    4799999999999999999999999999999875444 5444


Q ss_pred             EeeeCCCCceEEEEEEEEeecccc--ccCCcCccceeEEEeHHHHHhhccchh
Q 029277          116 NFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWMSVAEARKVCQHWW  166 (196)
Q Consensus       116 ~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~~~~~~  166 (196)
                      .+.  ........++|.+......  ....+.|+.+++|++++++.+++..+.
T Consensus        70 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~  120 (137)
T cd03424          70 YPS--PGFSDERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADGE  120 (137)
T ss_pred             ecC--CcccCccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence            322  2222334556666655432  233456789999999999998887664

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.78  E-value=4.7e-18  Score=130.48  Aligned_cols=128  Identities=19%  Similarity=0.203  Sum_probs=88.0

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeE
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW  115 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~  115 (196)
                      .+|.++++++++.+            ++|||+++.+. +.|.+|||++++||++++||.||++||||+.+..... ++.+
T Consensus         6 ~~~~~v~~~i~~~~------------g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~-~~~~   72 (156)
T PRK00714          6 GYRPNVGIILLNRQ------------GQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEI-LAET   72 (156)
T ss_pred             CCCCeEEEEEEecC------------CEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEE-EEEc
Confidence            57889999999864            27999998664 7899999999999999999999999999999765554 4432


Q ss_pred             ----EeeeCCC-----C---ceEEEEEEEEeeccc--c-c--cCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHH
Q 029277          116 ----NFKSRAH-----N---TDYQGYMFPLLVQDQ--L-A--EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  178 (196)
Q Consensus       116 ----~~~~~~~-----~---~~~~~~~f~~~~~~~--~-~--~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l  178 (196)
                          .|..+..     .   .....++|.+.....  . .  ..+++|+.+++|++++++.+++. +..+.+++.+...+
T Consensus        73 ~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~-~~~r~~~~~~~~~~  151 (156)
T PRK00714         73 RDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVV-PFKRDVYRRVLKEF  151 (156)
T ss_pred             CCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhch-hhhHHHHHHHHHHH
Confidence                2222210     0   011345666655321  1 1  11335789999999999998764 23356666555544

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.78  E-value=2.7e-18  Score=128.23  Aligned_cols=104  Identities=20%  Similarity=0.256  Sum_probs=74.7

Q ss_pred             CceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecc---eeeeeEEeeeCCC-----CceEEEEE
Q 029277           61 EDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC---ELLGEWNFKSRAH-----NTDYQGYM  130 (196)
Q Consensus        61 ~~~~vLLv~~~~~--~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~---~~l~~~~~~~~~~-----~~~~~~~~  130 (196)
                      ++.++||+++..+  +.|.||||++++|||+.+||+||++||||+.+....   .+++.+.+..+..     ......++
T Consensus        11 ~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (132)
T cd04661          11 DDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFF   90 (132)
T ss_pred             cCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEE
Confidence            4558999998653  689999999999999999999999999999866521   1123333332211     12245678


Q ss_pred             EEEeeccccccCCcCccceeEEEeHHHHHhhccch
Q 029277          131 FPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       131 f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      |.+....+... ...|+.+++|++++++.+++...
T Consensus        91 f~~~~~~g~~~-~~~e~~~~~W~~~~el~~~l~~~  124 (132)
T cd04661          91 FKARYMSGQFE-LSQNQVDFKWLAKEELQKYLNPP  124 (132)
T ss_pred             EEEEEecCccc-cCCCcceeEecCHHHHHhhcCHH
Confidence            87776654332 34678999999999999987644

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=3.9e-18  Score=126.06  Aligned_cols=99  Identities=21%  Similarity=0.094  Sum_probs=68.2

Q ss_pred             EEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHhhceeeeecce-eeeeEEeeeCCCCceEEEEEEEEeec
Q 029277           64 EVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECE-LLGEWNFKSRAHNTDYQGYMFPLLVQ  136 (196)
Q Consensus        64 ~vLLv~~~~~-----~~W~lP-gG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~~~  136 (196)
                      +|||++|...     |.|++| ||+++.||++ +||+||++||||+.+..... .++.+.+...   .....++|.+...
T Consensus        13 ~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~   88 (127)
T cd04693          13 ELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE---GFDDYYLFYADVE   88 (127)
T ss_pred             eEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC---CeEEEEEEEecCc
Confidence            7999887642     689998 8999999999 99999999999999765432 1344433221   2223334444333


Q ss_pred             cccccCCcCccceeEEEeHHHHHhhccchh
Q 029277          137 DQLAEWPEKNVRSRKWMSVAEARKVCQHWW  166 (196)
Q Consensus       137 ~~~~~~~~~e~~~~~W~~~~el~~~~~~~~  166 (196)
                      ......+.+|+.+++|++++++.+++....
T Consensus        89 ~~~~~~~~~E~~~~~w~~~~el~~~~~~~~  118 (127)
T cd04693          89 IGKLILQKEEVDEVKFVSKDEIDGLIGHGE  118 (127)
T ss_pred             ccccccCHHHhhhEEEeCHHHHHHHHhcCC
Confidence            222233345779999999999998876553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.77  E-value=7.2e-18  Score=130.47  Aligned_cols=125  Identities=13%  Similarity=0.101  Sum_probs=85.4

Q ss_pred             ccccccccCCCc-eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHH
Q 029277           27 TGRHLQRYQKGR-RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIE   99 (196)
Q Consensus        27 ~g~~~~~~~~~~-r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lP-gG~ve~gEs~~~Aa~REl~E   99 (196)
                      +.+...+..... +.++++++++.+            ++|||++|...     |.|.+| ||++++||++++||+||++|
T Consensus        17 ~~r~~~~~~~~~~~~~v~v~i~~~~------------~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~E   84 (165)
T cd02885          17 AEKLEAHLKGTLLHRAFSVFLFNSK------------GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLRE   84 (165)
T ss_pred             cCHHHHhhcCCcceeEEEEEEEcCC------------CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHH
Confidence            333333333344 777778788753            27999987642     679986 89999999999999999999


Q ss_pred             hhceeeeecceee-eeEEeeeCCCC---ceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccch
Q 029277          100 EAGVTGIVECELL-GEWNFKSRAHN---TDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       100 EtGl~~~~~~~~l-~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      |||+.+..... + +.+.|......   .+...++|.+...... ..+.+|+.+++|++++++.+++...
T Consensus        85 EtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~-~~~~~Ev~~~~w~~~~el~~~~~~~  152 (165)
T cd02885          85 ELGITGDLLEL-VLPRFRYRAPDDGGLVEHEIDHVFFARADVTL-IPNPDEVSEYRWVSLEDLKELVAAA  152 (165)
T ss_pred             HhCCCccchhh-ccceEEEEEEcCCCceeeEEEEEEEEEeCCCC-CCCccceeEEEEECHHHHHHHHHhC
Confidence            99999876665 3 44444332211   1234456666554332 2244677899999999999887654

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.77  E-value=4.1e-18  Score=130.86  Aligned_cols=110  Identities=17%  Similarity=0.065  Sum_probs=75.4

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcC-----CCCEEecCcccCCC-CCHHHHHHHHHHHhhceeeeecceeee
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECELLG  113 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-----~~~W~lPgG~ve~g-Es~~~Aa~REl~EEtGl~~~~~~~~l~  113 (196)
                      .++..|++...   +      ++.+|||++|..     .|.|.+|||+++.| |++.+||+||++||||+.+..... ++
T Consensus         2 ~~av~v~l~~~---~------~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~-l~   71 (157)
T cd03426           2 RAAVLVLLVER---E------GELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEV-LG   71 (157)
T ss_pred             ceEEEEEEEeC---C------CceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEE-EE
Confidence            34555555543   1      346899999865     37899999999999 999999999999999999877655 55


Q ss_pred             eEEeeeCCCCceEEEEEEEEeeccc-cccCCcCccceeEEEeHHHHHhh
Q 029277          114 EWNFKSRAHNTDYQGYMFPLLVQDQ-LAEWPEKNVRSRKWMSVAEARKV  161 (196)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~e~~~~~W~~~~el~~~  161 (196)
                      .+.......  ....+.|.+..... ......+|+.++.|++++++.+.
T Consensus        72 ~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  118 (157)
T cd03426          72 RLPPYYTRS--GFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP  118 (157)
T ss_pred             ECCCccccC--CCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence            443222211  12334455544432 22223347799999999999875

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.76  E-value=1.6e-17  Score=137.00  Aligned_cols=98  Identities=15%  Similarity=0.135  Sum_probs=75.0

Q ss_pred             EEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccccc
Q 029277           64 EVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE  141 (196)
Q Consensus        64 ~vLLv~~~~--~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  141 (196)
                      ++||+++.+  .+.|.+|||++|+|||+++||.||++||||+++..... ++...+.++    ...++.|.+........
T Consensus       144 ~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~-~~s~~~~~p----~~lm~~f~a~~~~~~~~  218 (256)
T PRK00241        144 EILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRY-VGSQPWPFP----HSLMLGFHADYDSGEIV  218 (256)
T ss_pred             EEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEE-EEeEeecCC----CeEEEEEEEEecCCccc
Confidence            899998754  37899999999999999999999999999999887776 665544332    23556777776543333


Q ss_pred             CCcCccceeEEEeHHHHHhhccchh
Q 029277          142 WPEKNVRSRKWMSVAEARKVCQHWW  166 (196)
Q Consensus       142 ~~~~e~~~~~W~~~~el~~~~~~~~  166 (196)
                      ..++|+.+++|++++++..+.....
T Consensus       219 ~~~~Ei~~a~W~~~del~~lp~~~s  243 (256)
T PRK00241        219 FDPKEIADAQWFRYDELPLLPPSGT  243 (256)
T ss_pred             CCcccEEEEEEECHHHCcccCCchH
Confidence            3345779999999999988765543

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=1e-17  Score=123.87  Aligned_cols=110  Identities=18%  Similarity=0.180  Sum_probs=78.5

Q ss_pred             EEEEEEEEeeccCCcccccCCceEEEEEEEcC-----CCCEEe-cCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (196)
Q Consensus        41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-----~~~W~l-PgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~  114 (196)
                      ++.+++++.+            ++|||++|..     .|.|++ |||+++.||++.+||+||++||||+.+..... ++.
T Consensus         2 ~~~v~i~~~~------------~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~-~~~   68 (126)
T cd04697           2 ATYIFVFNSE------------GKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTP-LGL   68 (126)
T ss_pred             eEEEEEEcCC------------CeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEE-eeE
Confidence            4567777753            3799888753     267999 69999999999999999999999999875555 565


Q ss_pred             EEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchh
Q 029277          115 WNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWW  166 (196)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~  166 (196)
                      +.+...  ......++|.+..... .....+|..+++|++++++.+++....
T Consensus        69 ~~~~~~--~~~~~~~~f~~~~~~~-~~~~~~E~~~~~w~~~~el~~~~~~~~  117 (126)
T cd04697          69 FYYDTD--GNRVWGKVFSCVYDGP-LKLQEEEVEEITWLSINEILQFKEGEN  117 (126)
T ss_pred             EEecCC--CceEEEEEEEEEECCC-CCCCHhHhhheEEcCHHHHHHHhhcCc
Confidence            554322  2233345666654322 223345779999999999999876554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.7e-17  Score=125.44  Aligned_cols=116  Identities=13%  Similarity=0.065  Sum_probs=79.0

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEe-cCcccCCCCCHHHHHHHHHHHhhceeeeecce-e
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECE-L  111 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~l-PgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~-~  111 (196)
                      +.++.+++++..   +      ++.++||.+|...     |.|.+ |||++++||++.+||+||++||||+.+..... +
T Consensus         2 h~~v~~~v~~~~---~------~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~   72 (144)
T cd04692           2 HRTFHCWIITKD---E------GKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIP   72 (144)
T ss_pred             ceEEEEEEEEcc---C------CCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEE
Confidence            457778888864   2      3468888887642     67999 59999999999999999999999998653221 1


Q ss_pred             eeeEEeeeC-CC--CceEEEEEEEEeecc--ccccCCcCccceeEEEeHHHHHhhcc
Q 029277          112 LGEWNFKSR-AH--NTDYQGYMFPLLVQD--QLAEWPEKNVRSRKWMSVAEARKVCQ  163 (196)
Q Consensus       112 l~~~~~~~~-~~--~~~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~  163 (196)
                      ++.+.+... ..  ......++|.+....  .....+++|+.+++|++++++.+++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~  129 (144)
T cd04692          73 LGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLE  129 (144)
T ss_pred             eeEEEEeccccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHH
Confidence            455544332 11  112344566655443  22223446789999999999988764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=3.4e-17  Score=120.55  Aligned_cols=110  Identities=17%  Similarity=0.112  Sum_probs=73.3

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcC-----CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-----~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~  114 (196)
                      +++++++++.+            +++||++|.+     .|.|.+|||+++.||++.+||.||++||||+.+..... ++.
T Consensus         2 ~~v~~vv~~~~------------~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~-~~~   68 (129)
T cd04699           2 VAVAALIVKDV------------GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLR-YPS   68 (129)
T ss_pred             ceEEEEEECCC------------CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeee-eeE
Confidence            35666666642            3799998864     35799999999999999999999999999999877665 332


Q ss_pred             EEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhcc
Q 029277          115 WNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQ  163 (196)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~  163 (196)
                      ..++..........++|.+..... ...+..|..+++|++++++..+..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~w~~~~el~~~~~  116 (129)
T cd04699          69 TVTHEDSGVYNVIYLVFVCEALSG-AVKLSDEHEEYAWVTLEELAILKA  116 (129)
T ss_pred             EEEEcCCCEEEEEEEEEEeeecCC-cccCChhheEEEEecHHHhhhhhc
Confidence            222222111233334455433322 222344678999999999865543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.74  E-value=3.2e-17  Score=140.45  Aligned_cols=123  Identities=17%  Similarity=0.135  Sum_probs=84.8

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeE
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW  115 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~  115 (196)
                      .+.|++|+++.+             +|||++|..   .|.|.+|||++++||++++||+||++||||+.+..... .+.+
T Consensus       203 ~vtv~avv~~~g-------------~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l-~~~~  268 (340)
T PRK05379        203 FVTVDAVVVQSG-------------HVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVL-RGSI  268 (340)
T ss_pred             ceEEEEEEEECC-------------EEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCccccccc-ceee
Confidence            467778877642             799999875   36799999999999999999999999999998765443 2221


Q ss_pred             ----EeeeCC--CCceEEEEEEEEeecccc-c-cCCcCccceeEEEeHHHHHhh--ccchhHHHHHHHHH
Q 029277          116 ----NFKSRA--HNTDYQGYMFPLLVQDQL-A-EWPEKNVRSRKWMSVAEARKV--CQHWWMKEALDRLV  175 (196)
Q Consensus       116 ----~~~~~~--~~~~~~~~~f~~~~~~~~-~-~~~~~e~~~~~W~~~~el~~~--~~~~~~~~~l~~~~  175 (196)
                          .+..+.  .......++|.+...... . ....++..+++|++++++..+  ..+..+..+|..++
T Consensus       269 ~~~~~f~~p~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~~  338 (340)
T PRK05379        269 RDQQVFDHPGRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDHFQIITHFL  338 (340)
T ss_pred             eeeEEEcCCCCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHHh
Confidence                122221  123445566666554322 1 224457799999999999875  45566677776554

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.74  E-value=6.6e-17  Score=118.85  Aligned_cols=107  Identities=16%  Similarity=0.160  Sum_probs=77.2

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (196)
                      ++||.+|...    |.|+||||++++||++.+||.||+.||||+.+..... ++.+.+..+.  .....++|.+......
T Consensus        17 ~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~   93 (129)
T PRK10776         17 EIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATL-FEKLEYEFPD--RHITLWFWLVESWEGE   93 (129)
T ss_pred             EEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceE-EEEEEeeCCC--cEEEEEEEEEEEECCc
Confidence            7999998663    6899999999999999999999999999998766555 6655554432  2233445554433221


Q ss_pred             ccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHH
Q 029277          140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  175 (196)
Q Consensus       140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~  175 (196)
                      .  ...|..+++|++++++......+.++.+++.+.
T Consensus        94 ~--~~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~~  127 (129)
T PRK10776         94 P--WGKEGQPGRWVSQVALNADEFPPANEPIIAKLK  127 (129)
T ss_pred             c--CCccCCccEEecHHHCccCCCCcccHHHHHHHH
Confidence            1  223567889999999998766677777776553

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.74  E-value=4.8e-17  Score=127.69  Aligned_cols=115  Identities=23%  Similarity=0.272  Sum_probs=76.7

Q ss_pred             eEEEEEEEcCC-----CCE-EecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeec
Q 029277           63 LEVLVISSQKG-----KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ  136 (196)
Q Consensus        63 ~~vLLv~~~~~-----~~W-~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~  136 (196)
                      ++|||.+|...     |.| .+|||++++|||+.+||+||++||||+.+..... ++.+.+...  ......++|.+...
T Consensus        49 g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~-~~~~~~~~~--~~~~~~~~f~~~~~  125 (180)
T PRK15393         49 GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAE-HGQFYFEDE--NCRVWGALFSCVSH  125 (180)
T ss_pred             CeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCcccee-ceeEEecCC--CceEEEEEEEEEeC
Confidence            37998887643     334 5899999999999999999999999998655544 555543322  22222334544433


Q ss_pred             cccccCCcCccceeEEEeHHHHHhhc--cchhHHHHHHHHHHHHhcc
Q 029277          137 DQLAEWPEKNVRSRKWMSVAEARKVC--QHWWMKEALDRLVMRLTSQ  181 (196)
Q Consensus       137 ~~~~~~~~~e~~~~~W~~~~el~~~~--~~~~~~~~l~~~~~~l~~~  181 (196)
                       ........|+.+++|++++++.++.  ..+.....+..++.+.++.
T Consensus       126 -~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~l~~~~~~  171 (180)
T PRK15393        126 -GPFALQEEEVSEVCWMTPEEITARCDEFTPDSLKALALWLTRNAKN  171 (180)
T ss_pred             -CCCCCChHHeeEEEECCHHHHhhhhhhcCccHHHHHHHHHHhhccc
Confidence             2222234577999999999999873  3345556666666655443

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=4.8e-17  Score=117.38  Aligned_cols=112  Identities=23%  Similarity=0.322  Sum_probs=82.0

Q ss_pred             EEEEEEEEeeccCCcccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEee
Q 029277           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (196)
Q Consensus        41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~--~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~  118 (196)
                      ++++++++.+            .++||+++.+  .+.|.+|||+++.||++.++|+||+.||+|+.+..... ++.+.+.
T Consensus         2 ~~~~i~~~~~------------~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~-~~~~~~~   68 (123)
T cd02883           2 AVGAVILDED------------GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRL-LGVYEVE   68 (123)
T ss_pred             ceEEEEECCC------------CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeE-EEEEEee
Confidence            4566776652            3799999888  58999999999999999999999999999999875444 5555554


Q ss_pred             eCCCCceEEEEEEEEeecccccc-CCcCccceeEEEeHHHHHhhccch
Q 029277          119 SRAHNTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       119 ~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      ..........++|.+........ ..+.+..+.+|++++++.+.....
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~~~~~  116 (123)
T cd02883          69 SPDEGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPALALSP  116 (123)
T ss_pred             ccCCCceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCccccccc
Confidence            44334456667777766543322 234566889999999998754433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.72  E-value=7.9e-17  Score=126.84  Aligned_cols=116  Identities=16%  Similarity=0.133  Sum_probs=78.8

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHhhceeeeecce
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECE  110 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lP-gG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~  110 (196)
                      .++.++++++++.+            ++|||++|...     |.|.+| ||++++||++++||+||++||||+.+.....
T Consensus        32 ~~h~av~v~i~~~~------------g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~   99 (184)
T PRK03759         32 PLHLAFSCYLFDAD------------GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLEL   99 (184)
T ss_pred             CeeeEEEEEEEcCC------------CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcccccc
Confidence            45677777788753            27999987432     567765 7999999999999999999999999864332


Q ss_pred             eeeeEEeeeCC--CC-ceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccch
Q 029277          111 LLGEWNFKSRA--HN-TDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       111 ~l~~~~~~~~~--~~-~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      .++.+.+....  .. .....++|.+.... ......+|+.+++|++++++.+++...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~-~~~~~~~Ev~~~~W~~~~el~~~i~~~  156 (184)
T PRK03759        100 VLPDFRYRATDPNGIVENEVCPVFAARVTS-ALQPNPDEVMDYQWVDPADLLRAVDAT  156 (184)
T ss_pred             ccceEEEEEecCCCceeeEEEEEEEEEECC-CCCCChhHeeeEEEECHHHHHHHHHhC
Confidence            24445443221  11 12244567666543 222233577999999999999886544

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=1e-16  Score=118.36  Aligned_cols=57  Identities=30%  Similarity=0.399  Sum_probs=49.2

Q ss_pred             EEEEEEEEeeccCCcccccCCceEEEEEEE-------cCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeee
Q 029277           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISS-------QKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI  106 (196)
Q Consensus        41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~-------~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~  106 (196)
                      ++|+|+++.+   +      +..+|||+++       +..+.|++|||+++.||++.+||+||++||||+.+.
T Consensus         2 ~~g~v~~~~~---~------~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662           2 SAGILLYRFR---D------GRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             eEEEEEEEEc---C------CcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence            6889999875   2      4568999985       334789999999999999999999999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.71  E-value=3e-16  Score=114.06  Aligned_cols=106  Identities=17%  Similarity=0.096  Sum_probs=78.7

Q ss_pred             eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccc
Q 029277           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ  138 (196)
Q Consensus        63 ~~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  138 (196)
                      +++||++|.+.    |.|.||||+++.+|++.++|.||+.||||+.+..... ++.+.+..+  ......++|.+.....
T Consensus        13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~   89 (124)
T cd03425          13 GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGEL-LATVEHDYP--DKRVTLHVFLVELWSG   89 (124)
T ss_pred             CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccce-EEEEEeeCC--CCeEEEEEEEEeeeCC
Confidence            37999988643    6899999999999999999999999999999877665 666655443  2334455666654432


Q ss_pred             cccCCcCccceeEEEeHHHHHhhccchhHHHHHHH
Q 029277          139 LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDR  173 (196)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~  173 (196)
                      ..  ...+...+.|++++++..+...+.++.+++.
T Consensus        90 ~~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~  122 (124)
T cd03425          90 EP--QLLEHQELRWVPPEELDDLDFPPADVPIVAA  122 (124)
T ss_pred             Cc--ccccCceEEEeeHHHcccCCCCcccHHHHHh
Confidence            21  2345688999999999988777766666653

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>TIGR00586 mutt mutator mutT protein

Probab=99.71  E-value=3.4e-16  Score=115.20  Aligned_cols=105  Identities=15%  Similarity=0.015  Sum_probs=75.6

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (196)
                      ++||.+|.+.    |.|+||||+++.||++.+|+.||+.||||+.+..... ++.+.+.++  ......++|.+......
T Consensus        17 ~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~-~~~~~h~~~--~~~~~~~~~~~~~~~~~   93 (128)
T TIGR00586        17 EIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEF-EKLEYEFYP--RHITLWFWLLERWEGGP   93 (128)
T ss_pred             EEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeE-EEEEEEECC--CcEEEEEEEEEEEcCCC
Confidence            7998888654    6899999999999999999999999999999877655 555554433  22334455555544322


Q ss_pred             ccCCcCccceeEEEeHHHHHhhccchhHHHHHHH
Q 029277          140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDR  173 (196)
Q Consensus       140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~  173 (196)
                      .  ...+..++.|++++++.++.....++.+++.
T Consensus        94 ~--~~~~~~~~~W~~~~~l~~~~~p~~~~~~~~~  125 (128)
T TIGR00586        94 P--GKEGQPEEWWVLVGLLADDFFPAANPVIIKL  125 (128)
T ss_pred             c--CcccccccEEeCHHHCCccCCCCCCHHHHHH
Confidence            1  1234567899999999988766666666654

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.71  E-value=2e-16  Score=121.63  Aligned_cols=114  Identities=14%  Similarity=0.081  Sum_probs=78.9

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHhhceeeeecce
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECE  110 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lP-gG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~  110 (196)
                      .++.++++++++.+            ++|||.+|...     |.|++| ||+++.||  .+||+||++||||+.+.....
T Consensus        25 ~~h~~v~v~v~~~~------------g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l   90 (158)
T TIGR02150        25 PLHRAFSVFLFNEE------------GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPL   90 (158)
T ss_pred             CeEEEEEEEEEcCC------------CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccce
Confidence            45667777777753            37999887653     789997 79999999  499999999999999766531


Q ss_pred             -eeeeEEeeeCCC-CceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccch
Q 029277          111 -LLGEWNFKSRAH-NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       111 -~l~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                       .++.+.+..... ......++|.+.... ......+|+.++.|++++++.+++..+
T Consensus        91 ~~~~~~~~~~~~~~g~~~~~~~f~~~~~~-~~~~~~~Ev~~~~W~~~~el~~~~~~~  146 (158)
T TIGR02150        91 TVLPRFSYRARDAWGEHELCPVFFARAPV-PLNPNPEEVAEYRWVSLEELKEILKAP  146 (158)
T ss_pred             EEcceEEEEEecCCCcEEEEEEEEEecCC-cccCChhHeeeEEEeCHHHHHHHHhcC
Confidence             134334433221 223445666665543 222234588999999999999887655

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=2e-16  Score=118.40  Aligned_cols=108  Identities=20%  Similarity=0.238  Sum_probs=75.5

Q ss_pred             EEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHhhceee-eecceeeee
Q 029277           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTG-IVECELLGE  114 (196)
Q Consensus        41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~-~~~~~~l~~  114 (196)
                      ++++++++.+            ++|||+++.+.     +.|.+|||+++.||++.+||.||++||||+.+ ..... +..
T Consensus         2 ~~~~~i~~~~------------g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~-~~~   68 (133)
T cd04685           2 AARVVLLDPD------------DRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPP-VWR   68 (133)
T ss_pred             eEEEEEEcCC------------CeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccce-EEE
Confidence            5778888764            27999987642     57999999999999999999999999999998 55444 433


Q ss_pred             EE--eeeCCCCceEEEEEEEEeeccccc---cCCc---CccceeEEEeHHHHHhh
Q 029277          115 WN--FKSRAHNTDYQGYMFPLLVQDQLA---EWPE---KNVRSRKWMSVAEARKV  161 (196)
Q Consensus       115 ~~--~~~~~~~~~~~~~~f~~~~~~~~~---~~~~---~e~~~~~W~~~~el~~~  161 (196)
                      ..  +...........++|.+.......   ....   .+...++|++++++...
T Consensus        69 ~~~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          69 RDAAFTFLGVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             EEEEEEecCccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence            22  333333334456677777654211   1111   23468999999999876

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=1.8e-16  Score=116.35  Aligned_cols=91  Identities=20%  Similarity=0.257  Sum_probs=71.4

Q ss_pred             EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccccccCC
Q 029277           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP  143 (196)
Q Consensus        64 ~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  143 (196)
                      ++||++++ .+.|.+|||+++.||++++||.||++||||+.+..... ++.+.....  .......+|.+.........+
T Consensus        12 ~vLl~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~-l~~~~~~~~--~~~~~~~~y~a~~~~~~~~~~   87 (118)
T cd04665          12 GLLLVRHK-DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTL-VGYYQVDLF--ESGFETLVYPAVSAQLEEKAS   87 (118)
T ss_pred             EEEEEEeC-CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEE-EEEEEecCC--CCcEEEEEEEEEEEecccccc
Confidence            79999886 46799999999999999999999999999999977766 777654332  233455677777665544456


Q ss_pred             cCccceeEEEeHHHH
Q 029277          144 EKNVRSRKWMSVAEA  158 (196)
Q Consensus       144 ~~e~~~~~W~~~~el  158 (196)
                      ..|+....|++.+..
T Consensus        88 ~~E~~~~~~~~~~~~  102 (118)
T cd04665          88 YLETDGPVLFKNEPE  102 (118)
T ss_pred             cccccCcEEeccCCc
Confidence            778899999997754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=3e-16  Score=118.87  Aligned_cols=101  Identities=21%  Similarity=0.205  Sum_probs=67.9

Q ss_pred             EEEEEEEcC-----CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeec----ceeeeeEEeeeCC----C--CceEEE
Q 029277           64 EVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE----CELLGEWNFKSRA----H--NTDYQG  128 (196)
Q Consensus        64 ~vLLv~~~~-----~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~----~~~l~~~~~~~~~----~--~~~~~~  128 (196)
                      ++||++|..     +|.|.+|||++++||++.+||+||+.||+|+.+...    .. ++.+.+..+.    .  ...+..
T Consensus        14 ~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~   92 (143)
T cd04694          14 KLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQV-LGLWESVYPPLLSRGLPKRHHIV   92 (143)
T ss_pred             EEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeE-EeeeccccccccCCCcccceeEE
Confidence            799999864     267999999999999999999999999999997653    33 5554433221    1  112222


Q ss_pred             EEEEEeeccc-----cc-cCCcCccceeEEEeHHHHHhhccch
Q 029277          129 YMFPLLVQDQ-----LA-EWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       129 ~~f~~~~~~~-----~~-~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      .+|.+.....     .. ....+|+.+++|++++++.+++...
T Consensus        93 ~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~~  135 (143)
T cd04694          93 VYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSAE  135 (143)
T ss_pred             EEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHhh
Confidence            2332222211     11 1223578999999999999887543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.69  E-value=4.3e-16  Score=122.75  Aligned_cols=103  Identities=20%  Similarity=0.060  Sum_probs=74.0

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (196)
                      ++||+++.+.    ..|+||||.+|+||++++||+||++||||+.+..... ++.+....  .......++|.+......
T Consensus        60 ~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~-l~~~~~~~--~~~~~~~~~f~a~~~~~~  136 (185)
T PRK11762         60 TLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTF-LKELSLAP--SYFSSKMNIVLAEDLYPE  136 (185)
T ss_pred             EEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEE-EEEEecCC--CccCcEEEEEEEEccccc
Confidence            7999998653    4599999999999999999999999999999988777 76654322  122234455555432221


Q ss_pred             -ccCCcCccceeEEEeHHHHHhhccchhHHH
Q 029277          140 -AEWPEKNVRSRKWMSVAEARKVCQHWWMKE  169 (196)
Q Consensus       140 -~~~~~~e~~~~~W~~~~el~~~~~~~~~~~  169 (196)
                       ....+.|..+..|++++++.+++..+.+.+
T Consensus       137 ~~~~~e~E~i~~~~~~~~e~~~~~~~g~i~d  167 (185)
T PRK11762        137 RLEGDEPEPLEVVRWPLADLDELLARPDFSE  167 (185)
T ss_pred             cCCCCCCceeEEEEEcHHHHHHHHHcCCCCc
Confidence             122234567899999999999987765543

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.67  E-value=4.9e-16  Score=122.48  Aligned_cols=118  Identities=19%  Similarity=0.086  Sum_probs=83.3

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---------CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecc
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---------KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC  109 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---------~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~  109 (196)
                      +.+|++|+++.+           +++|||+++.+.         ..|+||+|++|.||++++||+||++||||+.+....
T Consensus        44 ~~~v~vl~~~~~-----------~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~  112 (185)
T TIGR00052        44 GNAAAVLLYDPK-----------KDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLR  112 (185)
T ss_pred             CCeEEEEEEECC-----------CCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceE
Confidence            346666767542           347999986542         358999999999999999999999999999997766


Q ss_pred             eeeeeEEeeeCCCCceEEEEEEEEeecccc----ccCCcCccceeEEEeHHHHHhhccchhHHHH
Q 029277          110 ELLGEWNFKSRAHNTDYQGYMFPLLVQDQL----AEWPEKNVRSRKWMSVAEARKVCQHWWMKEA  170 (196)
Q Consensus       110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~  170 (196)
                      . ++.+.  ..........++|.+......    ....++|..+..|++++++.+++..+.+.+.
T Consensus       113 ~-~~~~~--~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~d~  174 (185)
T TIGR00052       113 K-LLSFY--SSPGGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKIDNG  174 (185)
T ss_pred             E-EEEEE--cCCCCCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCCCCCH
Confidence            5 55432  222333456677877754321    1112345678999999999999877755443

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.67  E-value=1.6e-15  Score=121.04  Aligned_cols=117  Identities=18%  Similarity=0.092  Sum_probs=82.0

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCC---------CEEecCcccCCCCCHHHHHHHHHHHhhceeeeecc
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGK---------GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC  109 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~---------~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~  109 (196)
                      ..+|++|++..+           +++|||+++.+.+         .|++|+|.+|+||++++||+||+.||||+.+....
T Consensus        49 ~~~V~il~~~~~-----------~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~  117 (202)
T PRK10729         49 GHAAVLLPFDPV-----------RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTK  117 (202)
T ss_pred             CCeEEEEEEECC-----------CCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEE
Confidence            346667777642           2379999876542         38999999999999999999999999999987766


Q ss_pred             eeeeeEEeeeCCCCceEEEEEEEEeecc----cc-ccCCcCccceeEEEeHHHHHhhccchhHHH
Q 029277          110 ELLGEWNFKSRAHNTDYQGYMFPLLVQD----QL-AEWPEKNVRSRKWMSVAEARKVCQHWWMKE  169 (196)
Q Consensus       110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~----~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~~~  169 (196)
                      . ++.+.  ...+......++|.+....    .. ....+.|..++.|++++++.+++..+.+.+
T Consensus       118 ~-l~~~~--~spg~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d  179 (202)
T PRK10729        118 P-VLSYL--ASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDN  179 (202)
T ss_pred             E-EEEEE--cCCCcCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCCCCc
Confidence            5 54432  2223334556777776422    11 112235567899999999999977665443

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.66  E-value=4.7e-15  Score=113.56  Aligned_cols=95  Identities=22%  Similarity=0.303  Sum_probs=72.4

Q ss_pred             EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccccccCC
Q 029277           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP  143 (196)
Q Consensus        64 ~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  143 (196)
                      ++||+++.+ ..|++|||++|+||++++||+||++||||+.+..... ++.+....  .......++|.+......   +
T Consensus        36 ~~LL~~~~~-~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~-lg~~~~~~--~~~~~~~~vf~A~~~~~~---~  108 (156)
T TIGR02705        36 QWLLTEHKR-RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHY-IGQYEVEG--ESTDFVKDVYFAEVSALE---S  108 (156)
T ss_pred             EEEEEEEcC-CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEE-EEEEEecC--CCcEEEEEEEEEEEeccc---c
Confidence            699998765 4599999999999999999999999999999988887 88765433  224455667777766332   2


Q ss_pred             cCccceeE-EEeHHHHHhhccch
Q 029277          144 EKNVRSRK-WMSVAEARKVCQHW  165 (196)
Q Consensus       144 ~~e~~~~~-W~~~~el~~~~~~~  165 (196)
                      .++..+.. +++++++.+++..+
T Consensus       109 ~~e~~E~~~~~~~~~~~~~~~~g  131 (156)
T TIGR02705       109 KDDYLETKGPVLLQEIPDIIKAD  131 (156)
T ss_pred             CCCceeeEeEEEHHHHHHHHhcC
Confidence            24556666 79999998776444

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.65  E-value=3.2e-15  Score=117.54  Aligned_cols=112  Identities=14%  Similarity=0.067  Sum_probs=72.4

Q ss_pred             ceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecc----------------eeeeeEEeeeCCCC--
Q 029277           62 DLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC----------------ELLGEWNFKSRAHN--  123 (196)
Q Consensus        62 ~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~----------------~~l~~~~~~~~~~~--  123 (196)
                      ..++|++++...+.|.||||++++||++.+||.||+.||||+.+....                . +.+|.....+..  
T Consensus        48 ~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~-~~vy~~~~~dpr~t  126 (186)
T cd03670          48 ILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDG-VEVYKGYVDDPRNT  126 (186)
T ss_pred             eeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccc-cEEEeccccCCCCC
Confidence            578999999888999999999999999999999999999976532210                1 223322222211  


Q ss_pred             --ceEEEEEEEEeecc-----ccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHH
Q 029277          124 --TDYQGYMFPLLVQD-----QLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  176 (196)
Q Consensus       124 --~~~~~~~f~~~~~~-----~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  176 (196)
                        ....+..|.+....     .......++..+++|+++++++.+..  .+.++|+.+.+
T Consensus       127 d~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~--dH~~Il~~a~~  184 (186)
T cd03670         127 DNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYA--NHSQFLKKVAE  184 (186)
T ss_pred             CcceEEEEEEEEEecCcccccccccCCCCchheeEEEEccccccccc--CHHHHHHHHHH
Confidence              12233333333221     11122335679999999999886543  45677776554

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=1.4e-15  Score=112.52  Aligned_cols=99  Identities=22%  Similarity=0.206  Sum_probs=59.9

Q ss_pred             ceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecc----
Q 029277           62 DLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD----  137 (196)
Q Consensus        62 ~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~----  137 (196)
                      ..++|+.+... +.|.||||++++||++.+||.||++||||+.+.......+.+.....  ...+..+++.+....    
T Consensus        13 ~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~   89 (126)
T cd04663          13 VLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFY--QKRHFWHLTLCEVDQDLPD   89 (126)
T ss_pred             eEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEe--eccEEEEEEEEEecCCCcc
Confidence            35777776655 56999999999999999999999999999997433221232221110  111223333333321    


Q ss_pred             c---cccCCcCccceeEEEeHHHHHhhcc
Q 029277          138 Q---LAEWPEKNVRSRKWMSVAEARKVCQ  163 (196)
Q Consensus       138 ~---~~~~~~~e~~~~~W~~~~el~~~~~  163 (196)
                      .   .....+.+..++.|++++++.....
T Consensus        90 ~~~~~~~~~E~~~i~~~Wv~l~~~~~~~~  118 (126)
T cd04663          90 SWVHFVQDDGGHEFRFFWVDLASCLDEFL  118 (126)
T ss_pred             cccCcccCCCCceEEEEEEccccccccce
Confidence            1   1111233335666999999865533

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.64  E-value=3.5e-15  Score=118.05  Aligned_cols=114  Identities=22%  Similarity=0.206  Sum_probs=77.2

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-----CCCEEecCcccCCC-CCHHHHHHHHHHHhhceeeeecce
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECE  110 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-----~~~W~lPgG~ve~g-Es~~~Aa~REl~EEtGl~~~~~~~  110 (196)
                      ..+.+|++|++..+          ++.++||++|..     .|.|+||||++|++ |++++||+||++||||+.......
T Consensus        28 ~~~~aavvl~l~~~----------~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~   97 (190)
T PRK10707         28 NQRQAAVLIPIVRR----------PQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEV   97 (190)
T ss_pred             cCCCeEEEEEEEEC----------CCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEE
Confidence            45567777777643          234788888543     27799999999985 789999999999999999887777


Q ss_pred             eeeeEEeeeCCCCceEEEEEEEEeeccccccCC-cCccceeEEEeHHHHHhhcc
Q 029277          111 LLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP-EKNVRSRKWMSVAEARKVCQ  163 (196)
Q Consensus       111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~  163 (196)
                       ++.+....... + .....|.+.........+ .+|..++.|++++++.++..
T Consensus        98 -lg~l~~~~~~~-~-~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~~  148 (190)
T PRK10707         98 -IGVLPPVDSST-G-YQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLGR  148 (190)
T ss_pred             -EEEeeeeeccC-C-cEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCccc
Confidence             77655322222 2 222333333332222223 35778999999999987753

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=7.2e-15  Score=115.15  Aligned_cols=123  Identities=15%  Similarity=0.114  Sum_probs=80.7

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCE-EecCcccCCCCCHHHHHHHHHHHhhceeeeecce
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVECE  110 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W-~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~  110 (196)
                      -++.++...+|..+..        +..++++.+|...     |.| .+|+|+++.||++.+||+||++||||+.+.....
T Consensus        30 ~~h~~v~~~~~~~~~~--------~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~  101 (180)
T cd03676          30 LVTYGVHLNGYVRDED--------GGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQ  101 (180)
T ss_pred             ceEEEEEEEEEEEcCC--------CCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhh
Confidence            3445555555655311        1357887776543     789 5899999999999999999999999999765321


Q ss_pred             --eeeeEEeeeC-CCC--ceEEEEEEEEeecccc-ccCCcCccceeEEEeHHHHHhhccchhH
Q 029277          111 --LLGEWNFKSR-AHN--TDYQGYMFPLLVQDQL-AEWPEKNVRSRKWMSVAEARKVCQHWWM  167 (196)
Q Consensus       111 --~l~~~~~~~~-~~~--~~~~~~~f~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~  167 (196)
                        +++.+.+... ...  .....++|.+...... ....++|+.++.|++++|+.+++....+
T Consensus       102 l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~g~~  164 (180)
T cd03676         102 LKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKEGEF  164 (180)
T ss_pred             ceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHcCCC
Confidence              1444443332 111  2344566766553322 2234467899999999999998766544

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.60  E-value=2.2e-14  Score=113.62  Aligned_cols=117  Identities=15%  Similarity=0.017  Sum_probs=81.2

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCC----------CEEecCcccCCCCCHHHHHHHHHHHhhceeeeec
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGK----------GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE  108 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~----------~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~  108 (196)
                      +.+|++|+++.+           +++++|+++.+.+          .|++|+|.+|.| ++++||+||+.||||+.+...
T Consensus        45 ~~~v~Vl~~~~~-----------~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~  112 (191)
T PRK15009         45 GNGATILLYNAK-----------KKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEV  112 (191)
T ss_pred             CCEEEEEEEECC-----------CCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceE
Confidence            446777777642           3379999976653          289999999966 699999999999999998776


Q ss_pred             ceeeeeEEeeeCCCCceEEEEEEEEeeccc--cc--cCCcCccceeEEEeHHHHHhhccchhHHHH
Q 029277          109 CELLGEWNFKSRAHNTDYQGYMFPLLVQDQ--LA--EWPEKNVRSRKWMSVAEARKVCQHWWMKEA  170 (196)
Q Consensus       109 ~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~--~~--~~~~~e~~~~~W~~~~el~~~~~~~~~~~~  170 (196)
                      .. ++.+ +..+ +......++|.+.....  ..  ...++|..++.|++++++.+++..+.+.+.
T Consensus       113 ~~-l~~~-~~sp-G~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~i~da  175 (191)
T PRK15009        113 RK-LFEL-YMSP-GGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDG  175 (191)
T ss_pred             EE-eeEE-EcCC-cccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCCCCcH
Confidence            66 5543 2222 23344566777765321  11  112456689999999999999876655433

>PRK08999 hypothetical protein; Provisional

Probab=99.60  E-value=2.4e-14  Score=121.15  Aligned_cols=106  Identities=16%  Similarity=0.077  Sum_probs=77.8

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (196)
                      ++||.+|..+    |.|+||||+++.||++.+||.||++||||+.+..... +..+.+.++.  .....++|.+......
T Consensus        18 ~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-l~~~~h~~~~--~~~~i~~y~~~~~~~~   94 (312)
T PRK08999         18 RILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARP-LITVRHDYPD--KRVRLDVRRVTAWQGE   94 (312)
T ss_pred             eEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceeccee-EEEEEEEcCC--CeEEEEEEEEEEecCc
Confidence            7999988653    6899999999999999999999999999999876655 5555554432  2334456655433221


Q ss_pred             ccCCcCccceeEEEeHHHHHhhccchhHHHHHHHH
Q 029277          140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL  174 (196)
Q Consensus       140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~  174 (196)
                        ....+..+++|++++++.++...+.++.+++.+
T Consensus        95 --~~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l  127 (312)
T PRK08999         95 --PHGREGQPLAWVAPDELAVYPFPPANQPIVRAL  127 (312)
T ss_pred             --ccCccCCccEEecHHHcccCCCCcchHHHHHHh
Confidence              123456788999999999887777777776655

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=2.2e-14  Score=105.24  Aligned_cols=104  Identities=19%  Similarity=0.142  Sum_probs=63.4

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~  114 (196)
                      +..++++|+...+             .+||+++..   .+.|.||||+++.||++.+||.||+.||||+.+....  +..
T Consensus         3 p~~~av~vl~~~~-------------~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~--l~~   67 (118)
T cd04674           3 PLPVVVALLPVDD-------------GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPAD--IRL   67 (118)
T ss_pred             CcEEEEEEEEECC-------------CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccE--EEE
Confidence            4556666655532             367777653   2789999999999999999999999999999976432  222


Q ss_pred             EEeeeCCCCceEEEEEEEEeecccc--ccCCcCccceeEEEeHHH
Q 029277          115 WNFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWMSVAE  157 (196)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~e  157 (196)
                      +..... ......++.|........  ...+..|..++.|+....
T Consensus        68 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~  111 (118)
T cd04674          68 FDVRSA-PDGTLLVFGLLPERRAADLPPFEPTDETTERAVVTAPS  111 (118)
T ss_pred             EEEEec-CCCeEEEEEEEeccccccCCCCCCCcceeeEEEccCCc
Confidence            222111 223334444444433322  123345556666665443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN03143 nudix hydrolase; Provisional

Probab=99.49  E-value=9.6e-13  Score=109.99  Aligned_cols=123  Identities=13%  Similarity=0.042  Sum_probs=72.3

Q ss_pred             ceEEEEEEEcCC--C--CEEecCcccCC-CCCHHHHHHHHHHHhhceeeeecce-eeee-------EEeeeCCCCceEEE
Q 029277           62 DLEVLVISSQKG--K--GMLFPKGGWEI-DESIQEAALRETIEEAGVTGIVECE-LLGE-------WNFKSRAHNTDYQG  128 (196)
Q Consensus        62 ~~~vLLv~~~~~--~--~W~lPgG~ve~-gEs~~~Aa~REl~EEtGl~~~~~~~-~l~~-------~~~~~~~~~~~~~~  128 (196)
                      +.+++|+++.+.  +  .|+||+|.+|. +|++.+||+||++||||+.+..... .+..       ..+....+......
T Consensus       142 e~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i  221 (291)
T PLN03143        142 ETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEI  221 (291)
T ss_pred             CEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCeE
Confidence            445889987663  2  58999999998 5899999999999999998643221 0210       01111112222233


Q ss_pred             EEEEEeec--cc--------cccC-CcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhccccC
Q 029277          129 YMFPLLVQ--DQ--------LAEW-PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLH  184 (196)
Q Consensus       129 ~~f~~~~~--~~--------~~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~~~~  184 (196)
                      ++|.+...  ..        .... .+.|..++.|++++++..+..+.....++..+......|-++
T Consensus       222 ~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~ktl~al~l~~~~k~~g~~~  288 (291)
T PLN03143        222 SLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADAKVLMAIALYEMAKREGLLP  288 (291)
T ss_pred             EEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhHHHHHHHHHHHHHHhcCCCC
Confidence            45543322  10        0111 234568899999999999886554443443333333444443

>PLN02709 nudix hydrolase

Probab=99.47  E-value=5.2e-13  Score=107.42  Aligned_cols=117  Identities=12%  Similarity=0.030  Sum_probs=76.2

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEecCcccCCC-CCHHHHHHHHHHHhhceeeeecce
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECE  110 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lPgG~ve~g-Es~~~Aa~REl~EEtGl~~~~~~~  110 (196)
                      .+|.+|..|++.....++.     ++.++||++|...     |.|.||||++|++ +++.+||+||+.||+|+.......
T Consensus        30 ~~r~AAVLv~l~~~~~~~~-----~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~v  104 (222)
T PLN02709         30 PAKSSAVLVCLYQEQREDK-----NELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTI  104 (222)
T ss_pred             CCCccEEEEEEeeccCCCC-----CceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEE
Confidence            3455665555554210000     3458999998653     8899999999996 579999999999999999876666


Q ss_pred             eeeeEEeeeCCCCceEEEEEEEEeecc--cccc-CCcCccceeEEEeHHHHHhh
Q 029277          111 LLGEWNFKSRAHNTDYQGYMFPLLVQD--QLAE-WPEKNVRSRKWMSVAEARKV  161 (196)
Q Consensus       111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~-~~~~e~~~~~W~~~~el~~~  161 (196)
                       ++........ .+ ..+.-|.+.+..  .... ...+|+.++.|++++.+.+.
T Consensus       105 -lg~L~~~~t~-sg-~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~  155 (222)
T PLN02709        105 -ISVLEPFVNK-KG-MSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD  155 (222)
T ss_pred             -eeecCCeECC-CC-CEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence             6665433222 12 234455544432  1121 23358899999999998643

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.46  E-value=1.4e-12  Score=96.23  Aligned_cols=102  Identities=24%  Similarity=0.204  Sum_probs=66.0

Q ss_pred             eEEEEEEEcCCC-CEEecCcccCCCCCHHH-HHHHHHHHhhceeeee--cceeeeeEEeeeCCCC---ceEEEEEEEEee
Q 029277           63 LEVLVISSQKGK-GMLFPKGGWEIDESIQE-AALRETIEEAGVTGIV--ECELLGEWNFKSRAHN---TDYQGYMFPLLV  135 (196)
Q Consensus        63 ~~vLLv~~~~~~-~W~lPgG~ve~gEs~~~-Aa~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~---~~~~~~~f~~~~  135 (196)
                      .++|+.+++..+ .|.+|||+++.||++.+ ||+||++||||+.+..  ... ++.+........   .......+....
T Consensus        24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (161)
T COG0494          24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLEL-LGEFPPSPGDGSSVGGREHRVFFVAEV  102 (161)
T ss_pred             CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeeccee-eeeccCcccCcccccceEEEEEEeeec
Confidence            479999888876 99999999999999888 9999999999999884  333 444432222211   112222222221


Q ss_pred             cc--cccc-CC---cCccceeEEEeHHHHHhhccch
Q 029277          136 QD--QLAE-WP---EKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       136 ~~--~~~~-~~---~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      ..  .... ..   ..+...+.|++++++.......
T Consensus       103 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  138 (161)
T COG0494         103 DDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLAE  138 (161)
T ss_pred             cccccccccccCCCcchhhceeeeeHHHcccccccc
Confidence            11  1111 11   2467899999999998775544

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.44  E-value=1.2e-13  Score=113.74  Aligned_cols=95  Identities=18%  Similarity=0.128  Sum_probs=75.2

Q ss_pred             EEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccccc
Q 029277           64 EVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE  141 (196)
Q Consensus        64 ~vLLv~~~~~--~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  141 (196)
                      ++||.++.+.  |.+.+-.|.||+|||+++|+.||++||+|+++...++ ++...|.++.    ..+.-|.+...++...
T Consensus       156 ~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY-~~SQPWPfP~----SLMigf~aey~sgeI~  230 (279)
T COG2816         156 EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRY-VGSQPWPFPH----SLMLGFMAEYDSGEIT  230 (279)
T ss_pred             ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeE-EeccCCCCch----hhhhhheeeecccccc
Confidence            5888876553  8899999999999999999999999999999999887 6665555543    4566666776665544


Q ss_pred             CCcCccceeEEEeHHHHHhhcc
Q 029277          142 WPEKNVRSRKWMSVAEARKVCQ  163 (196)
Q Consensus       142 ~~~~e~~~~~W~~~~el~~~~~  163 (196)
                      ....|..+.+||+.+|+..++.
T Consensus       231 ~d~~Eleda~WFs~~evl~~L~  252 (279)
T COG2816         231 PDEGELEDARWFSRDEVLPALP  252 (279)
T ss_pred             CCcchhhhccccCHhHHhhhcC
Confidence            4456889999999999665554

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.41  E-value=8.6e-12  Score=102.19  Aligned_cols=132  Identities=15%  Similarity=0.179  Sum_probs=78.7

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEe-----cCcccCCCC-------------CHHHHH
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLF-----PKGGWEIDE-------------SIQEAA   93 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~l-----PgG~ve~gE-------------s~~~Aa   93 (196)
                      .++.++.+++++.+            +++||.+|...     |.|..     |+++.++||             +..+||
T Consensus        54 l~Hra~~v~i~n~~------------g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA  121 (247)
T PLN02552         54 LLHRAFSVFLFNSK------------YELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAA  121 (247)
T ss_pred             ceEEEEEEEEEcCC------------CeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHH
Confidence            56677888888753            27888888654     58955     444444432             168999


Q ss_pred             HHHHHHhhceeeee-----cceeeeeEEeeeCCC------C---ceEEEEEEEEe-eccccccCCcCccceeEEEeHHHH
Q 029277           94 LRETIEEAGVTGIV-----ECELLGEWNFKSRAH------N---TDYQGYMFPLL-VQDQLAEWPEKNVRSRKWMSVAEA  158 (196)
Q Consensus        94 ~REl~EEtGl~~~~-----~~~~l~~~~~~~~~~------~---~~~~~~~f~~~-~~~~~~~~~~~e~~~~~W~~~~el  158 (196)
                      +||+.||+|+.+..     ... ++.+.|.....      .   .....++|... ..........+|+.+++|++++++
T Consensus       122 ~REL~EElGI~~~~~~~~~l~~-~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~~el  200 (247)
T PLN02552        122 QRKLLHELGIPAEDVPVDQFTF-LTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREEL  200 (247)
T ss_pred             HhHHHHHhCCCcccccccccee-eeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeHHHH
Confidence            99999999999543     223 45444444322      1   12222333222 222223334468899999999999


Q ss_pred             Hhhcc-------chhHHHHHHHHHHHHhccccCC
Q 029277          159 RKVCQ-------HWWMKEALDRLVMRLTSQQLHG  185 (196)
Q Consensus       159 ~~~~~-------~~~~~~~l~~~~~~l~~~~~~~  185 (196)
                      .+++.       .|.++.++    ..+...+++.
T Consensus       201 ~~~~~~~~~~~~tpw~~~~~----~~~l~~w~~~  230 (247)
T PLN02552        201 KEMMRKESGLKLSPWFRLIV----DNFLMKWWDD  230 (247)
T ss_pred             HHHHhhcCCcccCHHHHHHH----HHHHHHHHhh
Confidence            98853       34444444    4444555544

>PLN02791 Nudix hydrolase homolog

Probab=99.30  E-value=5.7e-11  Score=110.29  Aligned_cols=115  Identities=17%  Similarity=0.084  Sum_probs=76.5

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEe-cCcccCCCCCHHHHHHHHHHHhhceeeeec--
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVE--  108 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~l-PgG~ve~gEs~~~Aa~REl~EEtGl~~~~~--  108 (196)
                      .++.++.+.+|+.+           .+++||.+|...     |.|.+ ||||++.||++.+||+||+.||+|+.+...  
T Consensus        30 l~HrAvhVwIfn~~-----------~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l   98 (770)
T PLN02791         30 DYHRAVHVWIYSES-----------TQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAF   98 (770)
T ss_pred             CceEEEEEEEEECC-----------CCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhhe
Confidence            45667777778752           237888877552     78999 799999999999999999999999986432  


Q ss_pred             ceeeeeEEeeeC--CC--CceEEEEEEEEeeccc----cccCCcCccceeEEEeHHHHHhhcc
Q 029277          109 CELLGEWNFKSR--AH--NTDYQGYMFPLLVQDQ----LAEWPEKNVRSRKWMSVAEARKVCQ  163 (196)
Q Consensus       109 ~~~l~~~~~~~~--~~--~~~~~~~~f~~~~~~~----~~~~~~~e~~~~~W~~~~el~~~~~  163 (196)
                      .. ++.+.+...  ..  ..+...++|.+.....    .-..+.+|+.+++|++++|+.+++.
T Consensus        99 ~~-l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l~  160 (770)
T PLN02791         99 EL-LFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALA  160 (770)
T ss_pred             ee-eeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHHh
Confidence            22 444332211  11  1223444555432211    1122356889999999999987754

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=99.30  E-value=3.4e-11  Score=87.59  Aligned_cols=127  Identities=25%  Similarity=0.295  Sum_probs=84.5

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEc-------CCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecce
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQ-------KGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE  110 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~-------~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~  110 (196)
                      ++..+|+++++..   +      +...|||++..       +.|.|++|+|-...||++..||+||..||+|+-+.-...
T Consensus         2 pK~SAGvLlYR~~---a------G~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~   72 (161)
T COG4119           2 PKLSAGVLLYRAR---A------GVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRI   72 (161)
T ss_pred             CcccceeEEEEec---C------CCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchh
Confidence            4578999999986   4      45679999843       337899999999999999999999999999999854333


Q ss_pred             eeeeEEeeeCCCCceEEEEEEEEeeccc---------cccCCc--------CccceeEEEeHHHHHhhccchhHHHHHHH
Q 029277          111 LLGEWNFKSRAHNTDYQGYMFPLLVQDQ---------LAEWPE--------KNVRSRKWMSVAEARKVCQHWWMKEALDR  173 (196)
Q Consensus       111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~~---------~~~~~~--------~e~~~~~W~~~~el~~~~~~~~~~~~l~~  173 (196)
                      +++.+.  .+.   -..+..|..+....         ...||.        .|.....||++.++..-+.. ..+.+|..
T Consensus        73 ~lG~~k--Q~G---GKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil~-gQRpfldr  146 (161)
T COG4119          73 DLGSLK--QSG---GKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKILK-GQRPFLDR  146 (161)
T ss_pred             hhhhhc--cCC---CcEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHhh-ccchHHHH
Confidence            244322  111   12223332221100         011111        35688999999999877653 45677777


Q ss_pred             HHHHHh
Q 029277          174 LVMRLT  179 (196)
Q Consensus       174 ~~~~l~  179 (196)
                      +..+..
T Consensus       147 L~a~~~  152 (161)
T COG4119         147 LMAHAV  152 (161)
T ss_pred             HHHHhc
Confidence            766643

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.17  E-value=4.1e-12  Score=105.30  Aligned_cols=97  Identities=19%  Similarity=0.108  Sum_probs=62.2

Q ss_pred             eEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEee-c-cc
Q 029277           63 LEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV-Q-DQ  138 (196)
Q Consensus        63 ~~vLLv~~~~~--~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~-~~  138 (196)
                      .+.||.++.+.  |.|..++|.+|+|||+++||+||++||||++++.... ...-.++..  .. ..+..+.+.. . ..
T Consensus       200 ~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~-~asQPWP~~--p~-SLMIgc~ala~~~~~  275 (345)
T KOG3084|consen  200 KHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISY-VASQPWPLM--PQ-SLMIGCLALAKLNGK  275 (345)
T ss_pred             CEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEee-eecCCCCCC--ch-HHHHHHHHHHhhCCc
Confidence            36666665443  7899999999999999999999999999999988654 322222210  11 1111111111 1 11


Q ss_pred             cccCCcCccceeEEEeHHHHHhhcc
Q 029277          139 LAEWPEKNVRSRKWMSVAEARKVCQ  163 (196)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~el~~~~~  163 (196)
                      .....+.|..+.+||+-+|+.+.+.
T Consensus       276 I~vd~dlEleDaqwF~r~ev~~aL~  300 (345)
T KOG3084|consen  276 ISVDKDLELEDAQWFDREEVKSALT  300 (345)
T ss_pred             cccCcchhhhhcccccHHHHHHHHH
Confidence            2222334678999999999876543

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.07  E-value=3.4e-09  Score=82.71  Aligned_cols=101  Identities=14%  Similarity=0.104  Sum_probs=65.4

Q ss_pred             CceEEEEEEEcCC--CC--EEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCc-eEEEEEEEEee
Q 029277           61 EDLEVLVISSQKG--KG--MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNT-DYQGYMFPLLV  135 (196)
Q Consensus        61 ~~~~vLLv~~~~~--~~--W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~-~~~~~~f~~~~  135 (196)
                      ++..++|+++-+.  |.  -+||+|-++.||+++.||+|||+||||+...+......  .|..+...+ ......+.++.
T Consensus        86 G~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~--~f~DPGltn~~~~iv~v~idg  163 (225)
T KOG3041|consen   86 GKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPT--VFLDPGLTNCNLCIVVVDIDG  163 (225)
T ss_pred             CcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeecccc--EEcCCCCCCCceEEEEEEecC
Confidence            5668999987665  54  57899999999999999999999999999655433111  233332222 22233444433


Q ss_pred             cccccc-----CCcCccceeEEEeHHHHHhhcc
Q 029277          136 QDQLAE-----WPEKNVRSRKWMSVAEARKVCQ  163 (196)
Q Consensus       136 ~~~~~~-----~~~~e~~~~~W~~~~el~~~~~  163 (196)
                      ......     ..+.|..++.-++..++.+.+.
T Consensus       164 ~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~  196 (225)
T KOG3041|consen  164 DVPENQRPVQQLEDGEFIEVFLIPLSELWRELA  196 (225)
T ss_pred             CCccccCccccCCCCceEEEEEeeHHHHHHHHH
Confidence            322221     1235668888999988876543

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=99.05  E-value=7.4e-09  Score=74.57  Aligned_cols=98  Identities=16%  Similarity=0.175  Sum_probs=66.8

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (196)
                      ++||.+|..+    |.|+||+|.++.+|+..++..|++.||.++   .... ++.+.+.++.  ......+|.+......
T Consensus        15 ~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~H~fth--~~~~~~~~~~~~~~~~   88 (118)
T cd03431          15 RVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEP-LGTVKHTFTH--FRLTLHVYLARLEGDL   88 (118)
T ss_pred             eEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---cccc-ceeEEEecCC--eEEEEEEEEEEEeCCC
Confidence            7988888654    689999999999999999999999998765   2122 3444444432  2234456665544321


Q ss_pred             ccCCcCccceeEEEeHHHHHhhccchhHHHHHH
Q 029277          140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALD  172 (196)
Q Consensus       140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~  172 (196)
                           .+..+..|++++++..+.....++.+++
T Consensus        89 -----~~~~~~~W~~~eel~~~~~p~~~~kil~  116 (118)
T cd03431          89 -----LAPDEGRWVPLEELDEYALPTVMRKILE  116 (118)
T ss_pred             -----cCccccEEccHHHHhhCCCCHHHHHHHH
Confidence                 2345779999999998866665555553

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.98  E-value=4.5e-10  Score=93.09  Aligned_cols=113  Identities=23%  Similarity=0.259  Sum_probs=75.5

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeeccee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~  111 (196)
                      ..+..+|+.+++.+            .+||+++-...     |.|.+|+|.|+++|++.++|+||++||||++...... 
T Consensus       113 sh~vgvg~~V~n~~------------~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eV-  179 (295)
T KOG0648|consen  113 SHRVGVGAFVLNKK------------KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEV-  179 (295)
T ss_pred             hhheeeeeeEecCC------------ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhH-
Confidence            55677888888864            37999875432     7899999999999999999999999999997665554 


Q ss_pred             eeeEEeeeCCCCceEEEEEEEEeecc--ccccCCcCccceeEEEeHHHHHhhc
Q 029277          112 LGEWNFKSRAHNTDYQGYMFPLLVQD--QLAEWPEKNVRSRKWMSVAEARKVC  162 (196)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~  162 (196)
                      +..-.-+.......+...||.+....  .....++.|+..++|+++++.....
T Consensus       180 la~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp  232 (295)
T KOG0648|consen  180 LAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQP  232 (295)
T ss_pred             HHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhccc
Confidence            32111111110101223455555443  2233345677777999999887664

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.89  E-value=9.9e-09  Score=82.24  Aligned_cols=114  Identities=23%  Similarity=0.194  Sum_probs=70.8

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEecCcccCC-CCCHHHHHHHHHHHhhceeeeecceee
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEI-DESIQEAALRETIEEAGVTGIVECELL  112 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lPgG~ve~-gEs~~~Aa~REl~EEtGl~~~~~~~~l  112 (196)
                      |-++..|++...  ++      ++.+|||.+|.+.     |.-.||||+.|+ +++-..+|.||.+||.|+..+.... +
T Consensus        42 ~~~aVlI~L~~~--~~------~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~-~  112 (246)
T KOG3069|consen   42 RKAAVLIPLVQV--GS------GELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDV-L  112 (246)
T ss_pred             CCccEEEEEEEc--CC------CceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhh-h
Confidence            445555555543  11      4578999887654     788999999998 4677889999999999999765544 4


Q ss_pred             eeEEee-eCCCCceEEEEEEEEeecc-ccccCCcCccceeEEEeHHHHHhh
Q 029277          113 GEWNFK-SRAHNTDYQGYMFPLLVQD-QLAEWPEKNVRSRKWMSVAEARKV  161 (196)
Q Consensus       113 ~~~~~~-~~~~~~~~~~~~f~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~  161 (196)
                      +...-- .+......-+..|.....- .......+|..++.|+|++++..-
T Consensus       113 g~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~  163 (246)
T KOG3069|consen  113 GALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLP  163 (246)
T ss_pred             hhccceeeccCcccceeEEEEecccccccccCCchheeeeeeeeHHHHhhh
Confidence            432211 1111111112223222211 122334568899999999998654

>PLN02839 nudix hydrolase

Probab=98.60  E-value=2.6e-07  Score=79.16  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=71.2

Q ss_pred             CceEEEEEEEcCC-----CCEE-ecCcccCCCCCHHHHHHHHHHHhhceeee---ecceeeeeEEeeeCCCCc--eEEEE
Q 029277           61 EDLEVLVISSQKG-----KGML-FPKGGWEIDESIQEAALRETIEEAGVTGI---VECELLGEWNFKSRAHNT--DYQGY  129 (196)
Q Consensus        61 ~~~~vLLv~~~~~-----~~W~-lPgG~ve~gEs~~~Aa~REl~EEtGl~~~---~~~~~l~~~~~~~~~~~~--~~~~~  129 (196)
                      ++.++.+-+|...     |+|. +.+|++..||++.++++||+.||.|+...   .... .|.+.|.......  ....+
T Consensus       216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~-~G~VsY~~~~~~g~~~evly  294 (372)
T PLN02839        216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIA-VGAVSYMDIDQYCFKRDVLF  294 (372)
T ss_pred             CCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceE-eEEEEEEEEcCCccccCEEE
Confidence            3456555554432     6776 47999999999999999999999999843   2223 6777766443333  33344


Q ss_pred             EEEEeecccc-ccCCcCccceeEEEeHHHHHhhccc
Q 029277          130 MFPLLVQDQL-AEWPEKNVRSRKWMSVAEARKVCQH  164 (196)
Q Consensus       130 ~f~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~  164 (196)
                      +|....+... +...++|+.++.+++++|+.+.+..
T Consensus       295 ~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~~  330 (372)
T PLN02839        295 CYDLELPQDFVPKNQDGEVESFKLIPVAQVANVIRK  330 (372)
T ss_pred             EeeeecCCccccCCCccceeEEEEecHHHHHHHHHc
Confidence            5666655443 3445678899999999999877654

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=98.49  E-value=1.6e-06  Score=69.04  Aligned_cols=138  Identities=13%  Similarity=0.062  Sum_probs=79.1

Q ss_pred             CceEEEEEEEEEeeccCCc-ccccCCc--eEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeec-----
Q 029277           37 GRRQVVGCIPYRYKCVKQS-LDINEED--LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE-----  108 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g-~~~~~~~--~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~-----  108 (196)
                      ++..++.-|+-+.+.+.+| ++...++  .+++.|++...+.|.+|||.+|+||.+-.+++||+.||.=-.....     
T Consensus       110 GPNHaadPiVtRwkrd~~gai~~~sgk~ile~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ns~~k~~e~~l  189 (275)
T KOG4195|consen  110 GPNHAADPIVTRWKRDEDGAICRKSGKKILEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEAMNSLQKSNEEML  189 (275)
T ss_pred             CCccccCcceeeeeecCCCCeeecccceeeEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHHHHHHhhhhHHHH
Confidence            6667777777766533222 1111122  5788899999999999999999999999999999999963222111     


Q ss_pred             -ce----eeeeEEeeeCCCC--c--eEEEEEEEEeeccc-----cccCCcCccceeEEEeHHHHHhhccchhHHHHHHHH
Q 029277          109 -CE----LLGEWNFKSRAHN--T--DYQGYMFPLLVQDQ-----LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL  174 (196)
Q Consensus       109 -~~----~l~~~~~~~~~~~--~--~~~~~~f~~~~~~~-----~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~  174 (196)
                       .+    -+..|.-...+.+  .  ...+..+...-..+     ......++...++|++++.-..+  +.++.++|+.+
T Consensus       190 ~~~~~~~g~evYkGYvDDpRNTDNaWmET~avn~hde~g~~~~nl~L~AgDda~~vrW~dVn~~l~L--yAshs~fi~lv  267 (275)
T KOG4195|consen  190 HKLLSQCGMEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNNMDNLNLEAGDDAKKVRWVDVNSNLPL--YASHSQFIQLV  267 (275)
T ss_pred             HHHHHhCCeEEeeeecCCCCcccccceeEEEEeeeccccchhccccccccCcccceeEEEecCCccc--hhhHHHHHHHH
Confidence             01    0112221111111  1  11122233222221     12223455689999999985544  44556666655


Q ss_pred             HH
Q 029277          175 VM  176 (196)
Q Consensus       175 ~~  176 (196)
                      ..
T Consensus       268 ae  269 (275)
T KOG4195|consen  268 AE  269 (275)
T ss_pred             HH
Confidence            43

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.40  E-value=4.7e-06  Score=60.19  Aligned_cols=101  Identities=16%  Similarity=0.081  Sum_probs=59.4

Q ss_pred             eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccc
Q 029277           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ  138 (196)
Q Consensus        63 ~~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  138 (196)
                      +++||.+|..+    |.|+||.--.+ ++...+.+.+.+.+..|+.+..... ++.+.+.++.  ......+|.+.+...
T Consensus         9 ~~~Ll~kRp~~gll~GLwefP~~e~~-~~~~~~~l~~~~~~~~~~~~~~~~~-~~~v~H~fSH--~~~~~~~~~~~~~~~   84 (114)
T PF14815_consen    9 GRVLLEKRPEKGLLAGLWEFPLIESD-EEDDEEELEEWLEEQLGLSIRSVEP-LGTVKHVFSH--RRWTIHVYEVEVSAD   84 (114)
T ss_dssp             SEEEEEE--SSSTTTT-EE--EEE-S-SS-CHHHHHHHTCCSSS-EEEE-S--SEEEEEE-SS--EEEEEEEEEEEEE-S
T ss_pred             CEEEEEECCCCChhhcCcccCEeCcc-CCCCHHHHHHHHHHHcCCChhhhee-cCcEEEEccc--eEEEEEEEEEEecCC
Confidence            47999998875    68999997776 3444666677777889998877766 7877776653  344556777766643


Q ss_pred             cccCCcCccceeEEEeHHHHHhhccchhHHHHH
Q 029277          139 LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL  171 (196)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l  171 (196)
                      ...    ...+..|++++++.++.....++.++
T Consensus        85 ~~~----~~~~~~W~~~~~l~~~~~p~~~~kil  113 (114)
T PF14815_consen   85 PPA----EPEEGQWVSLEELDQYPLPTPMRKIL  113 (114)
T ss_dssp             S--------TTEEEEEGGGGGGS---HHHHHHH
T ss_pred             CCC----CCCCcEEEEHHHHhhCCCCHHHHHHh
Confidence            222    34689999999999876665555544

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.29  E-value=2.7e-06  Score=65.53  Aligned_cols=115  Identities=12%  Similarity=0.126  Sum_probs=77.8

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEe-cCcccCCCCCHHHHHHHHHHHhhceeeee--cc
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIV--EC  109 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~l-PgG~ve~gEs~~~Aa~REl~EEtGl~~~~--~~  109 (196)
                      .+.+..+.+|+.+    |        ++||.+|...     +.|.= .-||--+||+...|++|-+.+|+||+...  ..
T Consensus        32 LHrAFS~~lFne~----g--------~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~   99 (185)
T COG1443          32 LHRAFSSFLFNER----G--------QLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKL   99 (185)
T ss_pred             HHhhhheeEECCC----C--------ceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCcc
Confidence            3568889999975    2        5766665432     45642 45776799999999999999999999762  22


Q ss_pred             eeeeeEEeeeCCCCc---eEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccch
Q 029277          110 ELLGEWNFKSRAHNT---DYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       110 ~~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      .++..+.|...+.++   ..+-.+|.+...... ....+|+.+++|++++++.++...+
T Consensus       100 ~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~~~-~~npdEV~~~~wv~~e~l~~~~~~~  157 (185)
T COG1443         100 EILPRFRYRAADPDGIVENEICPVLAARLDSAL-DPNPDEVMDYRWVSPEDLKEMVDAT  157 (185)
T ss_pred             ccccceEEeccCCCCcceeeeeeEEEEeecCCC-CCChHHhhheeccCHHHHHHhhcCC
Confidence            225556676654333   333445555555422 2234688999999999999886554

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=97.74  E-value=4.7e-06  Score=70.01  Aligned_cols=106  Identities=20%  Similarity=0.219  Sum_probs=70.3

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEe
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF  117 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~  117 (196)
                      +-++-|+++++..           .-++||++......|.+|.|++..+|+-..||.||+.||||.++.....   .+.+
T Consensus        81 ~iPv~ga~ild~~-----------~sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~---~~e~  146 (348)
T KOG2937|consen   81 RIPVRGAIILDEK-----------RSRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQ---DNEG  146 (348)
T ss_pred             CCCCchHhhhhhh-----------hhhhheeeceecccccccCccccccchhhhcchhcccchhhcCHHHHhc---cccC
Confidence            3456788999875           3378999877766799999999999999999999999999999765322   1111


Q ss_pred             eeCCCCceEEEEEEEEee-c--cccccCCcCccceeEEEeHHHH
Q 029277          118 KSRAHNTDYQGYMFPLLV-Q--DQLAEWPEKNVRSRKWMSVAEA  158 (196)
Q Consensus       118 ~~~~~~~~~~~~~f~~~~-~--~~~~~~~~~e~~~~~W~~~~el  158 (196)
                      ....-.+ .....|.... .  ......-..|++.+.|+.++++
T Consensus       147 Ie~nI~d-q~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l  189 (348)
T KOG2937|consen  147 IETNIRD-QLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHL  189 (348)
T ss_pred             cccchhh-ceeeeeeeccceeeeecchhhhccccceeeeehhhh
Confidence            1111111 2233343321 1  1112223357889999999998

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=97.67  E-value=0.00037  Score=53.21  Aligned_cols=97  Identities=25%  Similarity=0.170  Sum_probs=62.6

Q ss_pred             EEEEEEEcCC-------CCEEe-cCcccCCCC---CHHHH----HHHHHHHhhceee---eecceeeeeEEeeeCCCCce
Q 029277           64 EVLVISSQKG-------KGMLF-PKGGWEIDE---SIQEA----ALRETIEEAGVTG---IVECELLGEWNFKSRAHNTD  125 (196)
Q Consensus        64 ~vLLv~~~~~-------~~W~l-PgG~ve~gE---s~~~A----a~REl~EEtGl~~---~~~~~~l~~~~~~~~~~~~~  125 (196)
                      +||+-.|-.+       +.+++ -|||+..++   |..+.    +.||+.||.++.-   ..... +|.+......-+..
T Consensus        73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~-lGlINdd~neVgkV  151 (203)
T COG4112          73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEF-LGLINDDTNEVGKV  151 (203)
T ss_pred             EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhhee-eeeecCCCcccceE
Confidence            7988887554       45777 689998754   44443    7799999999993   33444 55443222112224


Q ss_pred             EEEEEEEEeeccccccCCcCccceeEEEeHHHHHhh
Q 029277          126 YQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKV  161 (196)
Q Consensus       126 ~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  161 (196)
                      ++...|....+...-...+.+..+++|+.+.++.+.
T Consensus       152 HiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~~  187 (203)
T COG4112         152 HIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEKF  187 (203)
T ss_pred             EEEEEEEeeccccceeeeecceeeeeeeeHHHHHHH
Confidence            556677777665322334556799999999999874

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=97.42  E-value=0.00091  Score=52.55  Aligned_cols=115  Identities=18%  Similarity=0.167  Sum_probs=62.6

Q ss_pred             cccCC-CceE-EEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhcee-----
Q 029277           32 QRYQK-GRRQ-VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT-----  104 (196)
Q Consensus        32 ~~~~~-~~r~-~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~-----  104 (196)
                      ..|.. +.|. +.|+|+++..          +...|||++... ..|.||||.+.+||+..++.+|.+.+-.|..     
T Consensus        35 ~~y~~~GmRrsVe~Vllvh~h----------~~PHvLLLq~~~-~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~  103 (188)
T PF13869_consen   35 ENYEKEGMRRSVEGVLLVHEH----------GHPHVLLLQIGN-TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDP  103 (188)
T ss_dssp             HHHHHHSSEEEEEEEEEEEET----------TEEEEEEEEETT-TEEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS--
T ss_pred             HHHHHhCCceEEEEEEEEecC----------CCcEEEEEeccC-ccccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCC
Confidence            34443 4454 4555555553          567899999654 5899999999999999999999999998875     


Q ss_pred             -eeecceeeeeEEe--------eeCC-C--CceEEEEEEEEeeccccc-cCCcCccceeEEEeHHHHHh
Q 029277          105 -GIVECELLGEWNF--------KSRA-H--NTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWMSVAEARK  160 (196)
Q Consensus       105 -~~~~~~~l~~~~~--------~~~~-~--~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~el~~  160 (196)
                       ..+... ++.|--        .+-. +  .......+|.+....... ..|  ....+.=+|+=|+-+
T Consensus       104 ~w~vge~-l~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~~~F~VP--kn~kL~AvPLFeLyd  169 (188)
T PF13869_consen  104 DWEVGEC-LGTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEKCLFAVP--KNMKLVAVPLFELYD  169 (188)
T ss_dssp             --EEEEE-EEEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--SSEEEEEE--TTSEEEEEEHHHHTT
T ss_pred             CcEecCE-EEEEeCCCCCCCCCCCCCcccCChhheeEEEEEecCCCceEecC--CCCeEEeecHhhhhc
Confidence             233444 555421        1100 0  113345566666554321 112  234566667766643

...

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=96.73  E-value=0.0017  Score=49.95  Aligned_cols=55  Identities=22%  Similarity=0.202  Sum_probs=45.4

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhc
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG  102 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtG  102 (196)
                      ..|.+-|+++++..          +-..|||++-.. -.+.+|||.+++||+-.+.+.|-+.|-.|
T Consensus        68 mRrsvegvlivheH----------~lPHvLLLQig~-tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689|consen   68 MRRSVEGVLIVHEH----------NLPHVLLLQIGN-TFFKLPGGRLRPGEDEADGLKRLLTESLG  122 (221)
T ss_pred             hhheeeeeEEEeec----------CCCeEEEEeeCC-EEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence            34566777788775          445799998654 47899999999999999999999999999

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=96.17  E-value=0.045  Score=44.77  Aligned_cols=102  Identities=13%  Similarity=0.172  Sum_probs=64.4

Q ss_pred             ceEEEEEEEcCC--CCEEecCccc-CCCCCHHHHHHHHHHHhhceeeee---cceeeeeEEeeeCCCC-----ceEEEEE
Q 029277           62 DLEVLVISSQKG--KGMLFPKGGW-EIDESIQEAALRETIEEAGVTGIV---ECELLGEWNFKSRAHN-----TDYQGYM  130 (196)
Q Consensus        62 ~~~vLLv~~~~~--~~W~lPgG~v-e~gEs~~~Aa~REl~EEtGl~~~~---~~~~l~~~~~~~~~~~-----~~~~~~~  130 (196)
                      +.-+|||++.-+  +.|.||.+.. +.++++..+|.|++.+-.|=....   ...+++.+.+..+-..     ....+++
T Consensus       138 r~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff  217 (263)
T KOG4548|consen  138 RKLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFF  217 (263)
T ss_pred             ceEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEE
Confidence            346888885422  6799999999 899999999999999998866432   3333553333222111     1233455


Q ss_pred             EEEeeccc-cccCCcCccceeEEEeHHHHHhhccch
Q 029277          131 FPLLVQDQ-LAEWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       131 f~~~~~~~-~~~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      |.+..-.. .....  ...++.|++-+++.+.+...
T Consensus       218 ~k~~lv~~~~~kn~--n~edfvWvTkdel~e~l~~~  251 (263)
T KOG4548|consen  218 FKASLVANSNQKNQ--NKEDFVWVTKDELGEKLPKF  251 (263)
T ss_pred             eeeeeccccchhcc--cccceEEechHHHhhhcchH
Confidence            54443322 21211  23469999999999887654

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=96.13  E-value=0.018  Score=48.29  Aligned_cols=80  Identities=16%  Similarity=0.115  Sum_probs=55.9

Q ss_pred             EEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeH
Q 029277           76 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV  155 (196)
Q Consensus        76 W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~  155 (196)
                      .+|-+|-++..-|+.+-|..|+.||.|+++....+ +.+++|....+......+.|.+++.+...-.....+.+-...++
T Consensus        81 ielc~g~idke~s~~eia~eev~eecgy~v~~d~l-~hv~~~~~g~~~s~sa~~l~y~ei~es~kis~gggv~~~~~~~~  159 (405)
T KOG4432|consen   81 IELCAGLIDKELSPREIASEEVAEECGYRVDPDDL-IHVITFVVGAHQSGSAQHLYYAEIDESMKISEGGGVITKVYYPV  159 (405)
T ss_pred             eeeeccccccccCHHHHhHHHHHHHhCCcCChhHc-eEEEEEEeccccCccchheeeeecchhhccccCCceeeEEEEee
Confidence            45679999999999999999999999999988887 77777776544444455677777665433222233444444444


Q ss_pred             H
Q 029277          156 A  156 (196)
Q Consensus       156 ~  156 (196)
                      +
T Consensus       160 ~  160 (405)
T KOG4432|consen  160 N  160 (405)
T ss_pred             h
Confidence            3

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.50  E-value=0.052  Score=43.05  Aligned_cols=79  Identities=15%  Similarity=0.194  Sum_probs=49.7

Q ss_pred             CCHHHHHHHHHHHhhceeeeecc----eeeeeEEeeeCCCCc-eEEEEEEEEeeccccccCC-cCccceeEEEeHHHHHh
Q 029277           87 ESIQEAALRETIEEAGVTGIVEC----ELLGEWNFKSRAHNT-DYQGYMFPLLVQDQLAEWP-EKNVRSRKWMSVAEARK  160 (196)
Q Consensus        87 Es~~~Aa~REl~EEtGl~~~~~~----~~l~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~~~el~~  160 (196)
                      .....||+|-|.=|.||......    .+++.+.|..+..+. -.+..-|..-........| .+|+.+++|++.+|+.+
T Consensus       103 lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~~~~~nPnpnEv~e~ryvs~eelke  182 (225)
T KOG0142|consen  103 LGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSEIRYVSREELKE  182 (225)
T ss_pred             HHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcccceeeEEEEEeccCCCCCChhhhhHhheecHHHHHH
Confidence            46889999999999999965433    226666666554322 1122233222222222223 35889999999999999


Q ss_pred             hccch
Q 029277          161 VCQHW  165 (196)
Q Consensus       161 ~~~~~  165 (196)
                      ++..+
T Consensus       183 l~~~~  187 (225)
T KOG0142|consen  183 LVAKA  187 (225)
T ss_pred             HHhcc
Confidence            87554

>PRK10880 adenine DNA glycosylase; Provisional

Probab=95.28  E-value=0.25  Score=42.80  Aligned_cols=96  Identities=16%  Similarity=0.099  Sum_probs=48.8

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (196)
                      ++||.+|..+    |.|+||..  +..    + ..++..|+.|+....... ++.+.+.++.  .......|.+......
T Consensus       243 ~~~l~~r~~~gl~~gl~~fP~~--~~~----~-~~~~~~~~~~~~~~~~~~-~~~~~H~fTH--~~~~~~~~~~~~~~~~  312 (350)
T PRK10880        243 EVWLEQRPPSGLWGGLFCFPQF--ADE----E-ELRQWLAQRGIAADNLTQ-LTAFRHTFSH--FHLDIVPMWLPVSSFT  312 (350)
T ss_pred             EEEEEECCccChhhccccCCCC--cch----h-hHHHHHHhcCCchhhhcc-cCceEEEEee--EEEEEEEEEEEccccc
Confidence            6888887654    67999963  211    1 245566778875322222 3333333321  1111223333322111


Q ss_pred             ccCCcCccceeEEEeHHHHHhhccchhHHHHHH
Q 029277          140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALD  172 (196)
Q Consensus       140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~  172 (196)
                      ...+   .....|++++++..+....-++.+++
T Consensus       313 ~~~~---~~~~~w~~~~~~~~~~~p~~~~k~l~  342 (350)
T PRK10880        313 GCMD---EGNGLWYNLAQPPSVGLAAPVERLLQ  342 (350)
T ss_pred             cccC---CcCCeEechHHhcccCCcHHHHHHHH
Confidence            1111   12346999999998766665555553

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=94.51  E-value=0.087  Score=44.27  Aligned_cols=90  Identities=21%  Similarity=0.148  Sum_probs=57.4

Q ss_pred             EEecCcccCCCCCHHHHHHHHHHHhhceeeeeccee-eeeEEeeeCCCCceEEEEEEEEeeccc------cccCCcCccc
Q 029277           76 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL-LGEWNFKSRAHNTDYQGYMFPLLVQDQ------LAEWPEKNVR  148 (196)
Q Consensus        76 W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~-l~~~~~~~~~~~~~~~~~~f~~~~~~~------~~~~~~~e~~  148 (196)
                      .+|..|.|+..-|..+-|.||..||.|+++....+. ...+. +.-...+... .+|.+++.+.      .....++|..
T Consensus       286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~-sGVG~SG~~Q-Tmfy~eVTdA~rsgpGgg~~ee~E~I  363 (405)
T KOG4432|consen  286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYI-SGVGQSGDTQ-TMFYVEVTDARRSGPGGGEKEEDEDI  363 (405)
T ss_pred             eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheee-cccCCcCCee-EEEEEEeehhhccCCCCCccccccee
Confidence            567789999888999999999999999997554321 22221 1111122223 3444554431      1222345778


Q ss_pred             eeEEEeHHHHHhhccchhH
Q 029277          149 SRKWMSVAEARKVCQHWWM  167 (196)
Q Consensus       149 ~~~W~~~~el~~~~~~~~~  167 (196)
                      +..-+++++++.+...+++
T Consensus       364 Evv~lsle~a~~~~~q~~I  382 (405)
T KOG4432|consen  364 EVVRLSLEDAPSLYRQHNI  382 (405)
T ss_pred             eEEEechhhhhHHHhccCC
Confidence            9999999999988765544

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=93.37  E-value=0.24  Score=40.68  Aligned_cols=100  Identities=16%  Similarity=0.190  Sum_probs=65.2

Q ss_pred             eEEEEEEEcCC-----CCEE-ecCcccCCCCCHHHHHHHHHHHhhceeeeecc--eeeeeEEeee-CCC--CceEEEEEE
Q 029277           63 LEVLVISSQKG-----KGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVEC--ELLGEWNFKS-RAH--NTDYQGYMF  131 (196)
Q Consensus        63 ~~vLLv~~~~~-----~~W~-lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~--~~l~~~~~~~-~~~--~~~~~~~~f  131 (196)
                      .++.+-+|.+.     ++|. ..+|++-.|-.+.++|+.|..||+.+......  ...|.++|.. ...  -.....++|
T Consensus       148 l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qYVf  227 (306)
T KOG4313|consen  148 LCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQYVF  227 (306)
T ss_pred             eEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceEEE
Confidence            45555555442     3443 47999999999999999999999999963322  1145566552 221  123455677


Q ss_pred             EEeecccc-ccCCcCccceeEEEeHHHHHhhc
Q 029277          132 PLLVQDQL-AEWPEKNVRSRKWMSVAEARKVC  162 (196)
Q Consensus       132 ~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~  162 (196)
                      ....+... +...+.|...+.-+++.+..+.+
T Consensus       228 DL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~l  259 (306)
T KOG4313|consen  228 DLELPLDFIPQNNDGEVQAFELLTLKDCVERL  259 (306)
T ss_pred             eccCchhhcCCCCCCceeeEeeecHHHHHHHH
Confidence            76666543 44456778888889888876554

>PRK13910 DNA glycosylase MutY; Provisional

Probab=89.68  E-value=5.2  Score=33.80  Aligned_cols=26  Identities=12%  Similarity=0.088  Sum_probs=18.9

Q ss_pred             eeEEEeHHHHHhhccchhHHHHHHHH
Q 029277          149 SRKWMSVAEARKVCQHWWMKEALDRL  174 (196)
Q Consensus       149 ~~~W~~~~el~~~~~~~~~~~~l~~~  174 (196)
                      ...|++++++.++....-++.+++.+
T Consensus       256 ~~~w~~~~~~~~~~~p~~~~k~~~~l  281 (289)
T PRK13910        256 PIRFYSLKDLETLPISSMTLKILNFL  281 (289)
T ss_pred             cceEecHHHhhhcCCcHHHHHHHHHH
Confidence            44899999999887766556665443

>PF14443 DBC1: DBC1

Probab=84.27  E-value=6  Score=29.17  Aligned_cols=45  Identities=18%  Similarity=0.063  Sum_probs=30.5

Q ss_pred             eEEEEEEEcCC-----CCEEec--CcccCC-CCCHHHHHHHHHHHhhceeeee
Q 029277           63 LEVLVISSQKG-----KGMLFP--KGGWEI-DESIQEAALRETIEEAGVTGIV  107 (196)
Q Consensus        63 ~~vLLv~~~~~-----~~W~lP--gG~ve~-gEs~~~Aa~REl~EEtGl~~~~  107 (196)
                      .++|+.++.+.     |.|+--  ||-.+. ...+..+|+|-+++-||++.+.
T Consensus         8 lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~   60 (126)
T PF14443_consen    8 LKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN   60 (126)
T ss_pred             eeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence            45666655442     556543  444444 3577899999999999999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	196
2fvv_A	194	Human Diphosphoinositol Polyphosphate Phosphohydrol		2e-08
2duk_A	138	Crystal Structure Of Ms0616 Length = 138		7e-08
3mcf_A	136	Crystal Structure Of Human Diphosphoinositol Polyph		4e-06

>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1 Length = 194

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 18/131 (13%)
Query: 37  GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALR 95
           G ++   C+ +R          +E + EVL++SS +     + P GG E +E    AA+R
Sbjct: 38  GYKKRAACLCFR----------SESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVR 87
Query: 96  ETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEK-NV-RSRKWM 153
           E  EEAGV G +   L+G +  + R H T    Y++ L+V + L +W +  N+ R R+W 
Sbjct: 88  EVCEEAGVKGTL-GRLVGIFENQERKHRT----YVYVLIVTEVLEDWEDSVNIGRKREWF 142
Query: 154 SVAEARKVCQH 164
            + +A KV Q+
Sbjct: 143 KIEDAIKVLQY 153

>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616 Length = 138

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 18/132 (13%)
Query: 35  QKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAA 93
           ++G ++   C+ +R          +E++ EVL++SS +     + P GG E +E    AA
Sbjct: 6   REGFKKRAACLCFR----------SEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAA 55
Query: 94  LRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEK-NV-RSRK 151
           +RE  EEAGV G +   LLG +  + R H T    Y++ L V + L +W +  N+ R R+
Sbjct: 56  VREVYEEAGVKGKL-GRLLGIFENQDRKHRT----YVYVLTVTEILEDWEDSVNIGRKRE 110
Query: 152 WMSVAEARKVCQ 163
           W  V +A KV Q
Sbjct: 111 WFKVEDAIKVLQ 122

>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate Phosphohydrolase 3-Alpha Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 61  EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSR 120
           ED  +LV SS+     + P GG E +E    AA+RE  EEAGV G +   LLG +    +
Sbjct: 15  EDEVLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKL-GRLLGVFE---Q 70
Query: 121 AHNTDYQGYMFPLLVQDQLAEWPEKNV---RSRKWMSVAEARKVCQ 163
             + +++ Y++ L V + L +W E +V   R R+W  V +A KV Q
Sbjct: 71  NQDPEHRTYVYVLTVTELLEDW-EDSVSIGRKREWFKVEDAIKVLQ 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	1e-36
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	7e-15
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	1e-11
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	4e-11
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	5e-10
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	1e-09
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	1e-09
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	1e-09
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	2e-09
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	2e-08
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	3e-08
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	3e-08
3exq_A	161	Nudix family hydrolase; protein structure initiati	4e-07
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	4e-07
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	5e-07
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	6e-07
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	1e-06
2b06_A	155	MUTT/nudix family protein; structural genomics, P	2e-06
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	2e-06
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	2e-06
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	3e-06
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	4e-06
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	5e-06
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	7e-06
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	1e-05
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	1e-05
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	1e-05
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	1e-05
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	3e-05
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	8e-05
3f13_A	163	Putative nudix hydrolase family member; structural	9e-05
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	1e-04
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	1e-04
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	1e-04
3grn_A	153	MUTT related protein; structural genomics, hydrola	2e-04
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	2e-04
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	3e-04
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	4e-04
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	4e-04
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	5e-04

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score =  125 bits (314), Expect = 1e-36
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 17/163 (10%)

Query: 11  VSLVTPENVVGNLVSRTGRHLQRY-QKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVIS 69
           V L T      +++       + Y   G ++   C+ +R +          E+  +LV S
Sbjct: 11  VDLGTENLYFQSMMKLKSNQTRTYDGDGYKKRAACLCFRSE---------SEEEVLLVSS 61

Query: 70  SQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGY 129
           S+     + P GG E +E    AA+RE  EEAGV G +   L+G +  + R H T    Y
Sbjct: 62  SRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLG-RLVGIFENQERKHRT----Y 116

Query: 130 MFPLLVQDQLAEWPEKN--VRSRKWMSVAEARKVCQHWWMKEA 170
           ++ L+V + L +W +     R R+W  + +A KV Q+    +A
Sbjct: 117 VYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYHKPVQA 159

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 67.9 bits (166), Expect = 7e-15
 Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 6/143 (4%)

Query: 43  GCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALRETIEEA 101
           G I +R   +     ++   +E L++ +  G      PKG  E  E   E ALR T EEA
Sbjct: 12  GLIIFRRCLI---PKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEA 68

Query: 102 GVTGIVECELLG--EWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEAR 159
           G+       + G          +      Y    +    +        ++ +W+ + EA 
Sbjct: 69  GIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEAC 128

Query: 160 KVCQHWWMKEALDRLVMRLTSQQ 182
           ++ Q   MK AL      L S +
Sbjct: 129 QLAQFKEMKAALQEGHQFLCSIE 151

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 58.8 bits (142), Expect = 1e-11
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN- 116
             E + +  V+         F  GG E +E+I E A RE+IEE  +   V+   L     
Sbjct: 15  KTEANYQFGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHAS 74

Query: 117 FKSRAHNTDYQG----YMFPLLVQDQLAEWPEKN-VRSRKWMSVAEARKVCQHWWMKEAL 171
             +   + +       Y F + +     +          +W+S   A ++ +    K AL
Sbjct: 75  IPNFHFSFNKPYVVPEYCFAIDLTSCSYQVTLSLEHSELRWVSYESAIQLLEWDSNKTAL 134

Query: 172 DRLVMRLTSQQL 183
             L  RL +  +
Sbjct: 135 YELNERLKNNDM 146

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 54.4 bits (131), Expect = 5e-10
 Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 3/115 (2%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117
            NE   ++L++   +     FP+G    DE+  +  +RE  EE G    +   +      
Sbjct: 12  FNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFD--LTDYIDDNQFI 69

Query: 118 KSRAHNTDYQGYMFPLLVQD-QLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 171
           +      +Y+ ++   + +           +   +W    +  K      +K  L
Sbjct: 70  ERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSNIKYYL 124

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 58  INEEDLEVLVISSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN 116
           ++    + +++   K      FPKG  + DES  + A+RE  EE G        +     
Sbjct: 109 LDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFD--CSSRINPNEF 166

Query: 117 FKSRAHNTDYQGYMFPLLVQD-QLAEWPEKNVRSRKWMSVAE 157
                   + + Y+ P +  D +      K +   +W ++ +
Sbjct: 167 IDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMD 208

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 19/138 (13%)

Query: 42  VGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGML-FPKGGWEIDESIQEAALRETIEE 100
            G + YR              +E L++ +         PKG  +  E   +AA+RET EE
Sbjct: 6   AGLVIYRK---------LAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEE 56

Query: 101 AGVTGIV-----ECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 155
           A +T        +C     +  K +  +  Y    +   + +          ++ KW  +
Sbjct: 57  ANITKEQLTIHEDCHETLFYEAKGKPKSVKY----WLAKLNNPDDVQLSHEHQNWKWCEL 112

Query: 156 AEARKVCQHWWMKEALDR 173
            +A K+  +  M   L +
Sbjct: 113 EDAIKIADYAEMGSLLRK 130

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 3/120 (2%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117
              E+  ++++ +  G     P G  E  E+ +EA  RE +EE G++  + C L     +
Sbjct: 26  SKPENNTMVLVQAPNGA-YFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEY 84

Query: 118 KSRAHNTDYQGYMFPLLVQDQLAEWPEKN--VRSRKWMSVAEARKVCQHWWMKEALDRLV 175
               H            V +   +  E      +  W++  EA ++ +    + A+++ +
Sbjct: 85  FYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSHRWAVEKWL 144

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 11/121 (9%)

Query: 61  EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE---WNF 117
              EVL++  + G   +FPKG  E  ES++EAA+RE  EE GV   V    L      N 
Sbjct: 12  AKREVLLLRDRMGF-WVFPKGHPEPGESLEEAAVREVWEETGVRAEVL-LPLYPTRYVNP 69

Query: 118 KSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR 177
           K       +       L++ + A   E+ +    W S  EAR +         L+  + R
Sbjct: 70  KGVEREVHW------FLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALER 123

Query: 178 L 178
           L
Sbjct: 124 L 124

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 58  INEEDLEVLVISSQKGKGML---FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE 114
           I ++D + L++        +    P G  E  ESI +A  RE +EE G +  +   L G 
Sbjct: 15  IEQDD-KYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHS-FLPEVLTGI 72

Query: 115 WNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKN-VRSRKWMSVAEAR 159
           +++   ++ T Y  + F   V     +      +    W S+ E R
Sbjct: 73  YHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIR 118

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 60  EEDLEVLVIS-SQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117
             + + LV+  +  GK +   P G  E DE++ EAA RE  EE G++       +    +
Sbjct: 13  HAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGIS-AQPQHFIRMHQW 71

Query: 118 KSRAHNTDYQGYMFPLLVQDQLAEWPEKN-VRSRKWMSVAEARK 160
            +    T +  ++F + ++      P  + +   +W+S  E  +
Sbjct: 72  IAP-DKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQ 114

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 51.4 bits (122), Expect = 3e-08
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 43  GCIPYRYKCVKQSL-----------DINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQE 91
           G I +R+K                     + +EV ++   K     +PKG  E +E+ + 
Sbjct: 7   GGIVWRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPKYDDWSWPKGKLEQNETHRH 66

Query: 92  AALRETIEEAGVTGIV 107
           AA+RE  EE G    +
Sbjct: 67  AAVREIGEETGSPVKL 82

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 58  INEEDLEVLVISSQKGKGML---FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE 114
            + E   VLV             FP G  E+ E    AA+RE  EE G+  +      G 
Sbjct: 18  TDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLR-LSGVTFCGT 76

Query: 115 WNFKSRAHNTDYQGYMF 131
             +          G ++
Sbjct: 77  CEWFDDDRQHRKLGLLY 93

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 67  VISSQKGKGMLFPKGGW-EIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD 125
           ++  Q+  G+    GGW ++D+S+++  ++E  EEAG+    +  ++   +         
Sbjct: 83  ILLVQENDGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQ-RVVAILDKHKNNPAKS 141

Query: 126 YQGYM 130
                
Sbjct: 142 AHRVT 146

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 58  INEEDLEVLVISSQKGKGML---FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 113
              E  EVL+I   K +       P G  E  E+I EA  RE  EEAG+    E  LL 
Sbjct: 27  FLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPE-TLLS 84

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 47.0 bits (111), Expect = 6e-07
 Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 11/132 (8%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL----LG 113
           +N+E  + L+I         +  G  + ++   + A++E  EE GV            L 
Sbjct: 53  VNKERNKFLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALD 112

Query: 114 EWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSR-------KWMSVAEARKVCQHWW 166
                       Y      L +   +    ++ +  +        W+   E  K C    
Sbjct: 113 VLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYCSEPH 172

Query: 167 MKEALDRLVMRL 178
           M    ++L+ +L
Sbjct: 173 MIPIYEKLINKL 184

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGW-EIDESIQEAALRETIEEAGVTGIVECELLGEWN 116
           + + +  + V     GK  L P GGW ++  +  E A +E  EE G       +LL  ++
Sbjct: 75  VFQNEKLLFVKEKSDGKWAL-P-GGWADVGYTPTEVAAKEVFEETGYEVDHF-KLLAIFD 131

Query: 117 FKSRAHNTDYQGYM 130
            +    +       
Sbjct: 132 KEKHQPSPSATHVY 145

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 58  INEEDLEVLVISSQKGKGML----FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 113
            + E   V++              FP G  E DE+  E+ +RE  EE G+T I   +L+G
Sbjct: 16  EDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLT-IQNPQLVG 74

Query: 114 --EWNFKSRAH 122
              W   +   
Sbjct: 75  IKNWPLDTGGR 85

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 17/142 (11%)

Query: 59  NEEDLEVLVI--SSQKGKGMLFP-KGGW-------EIDESIQEAALRETIEEAGVTGIVE 108
            +  L +L+I  S    +G      G W       + +ES ++AA RE  EE  +T I  
Sbjct: 42  GKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIP- 100

Query: 109 CELLGEWNFKSR--AHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVC---Q 163
               G ++   R        + +   +  +         +        + EA ++     
Sbjct: 101 LIPFGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFD 160

Query: 164 HWWM-KEALDRLVMRLTSQQLH 184
           H  M K+A   +       + H
Sbjct: 161 HLDMLKKAFSAITEEFLLTEGH 182

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 78  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD 137
              G  E  E+  +AA+RE  EE  +  + E   L +           +  + +   V  
Sbjct: 38  SVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTR 97

Query: 138 QLAEW------PEKNVRSR-----KWMSVAEARKVCQHWWMKEALDRLVMRL 178
               W       E+ +        KW+    A  + + W  ++A+++ V+  
Sbjct: 98  NTESWFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINA 149

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 58  INEEDLEVLVISSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN 116
           I +   ++LV    K KG      G  +++ES ++A +RE  EE GV       L     
Sbjct: 26  IVQNH-KLLVT---KDKGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQ-LAFVVE 80

Query: 117 FKSRAHNTDYQGYMFPLLVQ----DQLAEWPEKNVRSRKWMSVAEARKV 161
            +       Y    F  LV       L    ++  +  +W+ + + + +
Sbjct: 81  NRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNI 129

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 78  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPL 133
            P G  E  ESI E   RE  EE G+T +   EL G ++            +M   
Sbjct: 30  APGGKMEAGESILETVKREYWEETGIT-VKNPELKGIFSMVIFDEGKIVSEWMLFT 84

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 44.1 bits (104), Expect = 5e-06
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 58  INEEDLEVLVI-SSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115
            +E   ++LV+    K K M  FP G  E +E I + A+RE  EE G+       +L   
Sbjct: 34  FDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFR-SVLSIR 92

Query: 116 NFKSRAHNTDYQGYMF 131
              +            
Sbjct: 93  QQHTNPGAFGKSDMYI 108

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 43.4 bits (102), Expect = 7e-06
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 58  INEEDLEVLVI--SSQKGKGMLFPKGGW-EIDESIQEAALRETIEEAGVTGIVECELLGE 114
           +     E L+   +++  +G  F  GG  + DE+++ A  R T+ E G+   +       
Sbjct: 25  VENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYG 84

Query: 115 WNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSR-------KWMSVAEARK 160
                   N     +    +V        E+ +          +W++      
Sbjct: 85  VWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLA 137

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 15/140 (10%)

Query: 51  CVKQSLDINEEDLEVLVI--SSQKGKGML-FPKGGW-EIDESIQEAALRETIEEAGVTGI 106
            V    +   + L+VL+I       +     P GG+   +ES +++ LRET EE GV   
Sbjct: 44  MVLLCYNKEADQLKVLLIQRKGHPFRNSWALP-GGFVNRNESTEDSVLRETKEETGVVIS 102

Query: 107 VEC-ELLGEWNFKSR---------AHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVA 156
            E  E L  ++   R         ++               +   W       +      
Sbjct: 103 QENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSH 162

Query: 157 EARKVCQHWWMKEALDRLVM 176
           E  ++        +L +  +
Sbjct: 163 EDVEITLDLKTAASLGKDTL 182

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 56  LDINEEDLEVLVI--SSQKGKGMLFPKGGW---EIDESIQEAALRETIEEAGVTGIVECE 110
              +++ L+VL++  S+    G+    GG+     DES+++  LR+  E+  V      E
Sbjct: 30  FTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPY-IE 88

Query: 111 LLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEA 170
            L      SR          +  L+  Q  +    +V   KW  +A+  ++   +   + 
Sbjct: 89  QLCTVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDHLQL 148

Query: 171 LDRLVMRLTSQ 181
           +++   RLT +
Sbjct: 149 IEQARERLTQK 159

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 64  EVLVISSQKGKGM---LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSR 120
            VL+   ++G G        G  +  E+I++ A RE  EE+G+T +     +G+  F+  
Sbjct: 37  RVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLT-VDALHKVGQIVFEFV 95

Query: 121 AHNTDYQGYMF 131
                   ++F
Sbjct: 96  GEPELMDVHVF 106

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 22/80 (27%)

Query: 41  VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGW-------EIDESIQEAA 93
               I   +          E    +++I  ++     +P  G        E+ E ++EAA
Sbjct: 11  ATDVIIRLWD--------GENFKGIVLI--ERK----YPPVGLALPGGFVEVGERVEEAA 56

Query: 94  LRETIEEAGVTGIVECELLG 113
            RE  EE G+   +  +L+G
Sbjct: 57  AREMREETGLEVRLH-KLMG 75

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 10/127 (7%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117
           + E   +VL++  ++    ++P G  E +E+  EA  RE  EE G+         G  + 
Sbjct: 8   LVENG-KVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDE 66

Query: 118 KSRAHNTDYQGYMFPLLVQDQ---------LAEWPEKNVRSRKWMSVAEARKVCQHWWMK 168
            +             +   ++         L +    ++++ +W+ V E  ++     ++
Sbjct: 67  NAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIETFPNVR 126

Query: 169 EALDRLV 175
           + +   +
Sbjct: 127 KVVSLAL 133

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 61  EDLEVLVISSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS 119
           ED +VL++  +        P G  E  E+++EA +RE  EE G+   ++ +LL   +   
Sbjct: 32  EDEKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIK-KLLYVCDKPD 90

Query: 120 RAHNTDYQGYMFPLL---VQDQLAEWPEKNVRSRKWMSVAE 157
            + +  +  ++   +   +     E+    +   + + + E
Sbjct: 91  ASPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINE 131

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 40.3 bits (94), Expect = 9e-05
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 60  EEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS 119
           E    VLV +S+ G+    P G     E   +A +RE  EE G+  I     L +     
Sbjct: 24  EMPDGVLVTASRGGRYN-LPGGKANRGELRSQALIREIREETGLR-INSMLYLFDHITPF 81

Query: 120 RAH 122
            AH
Sbjct: 82  NAH 84

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGW-------EIDESIQEAALRETIEEAGVTGIVECE 110
           +NE   ++L++  +   G     G W       E  E+ Q+AA+RE  EE G+  +   +
Sbjct: 21  LNERG-DILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLR-VRPVK 78

Query: 111 LLG 113
            LG
Sbjct: 79  FLG 81

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 18/117 (15%)

Query: 24  VSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGML-----F 78
           +     + Q     +R +V  +            I  +    L+      +G+       
Sbjct: 13  LGTENLYFQSNAMRQRTIVCPL------------IQNDG-CYLLCKMADNRGVFPGQWAL 59

Query: 79  PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 135
             GG E  E I+EA  RE  EE G   I+       +    R             ++
Sbjct: 60  SGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMI 116

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 73  GKGML-FPKGGWEIDESIQEAALRETIEEAGVT 104
            +G    P G  E +E++ + A RET+EEA   
Sbjct: 63  YRGKWTLPAGFMENNETLVQGAARETLEEANAR 95

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 78  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118
            P G    DES++E   RE  EE G+T +V  ++ G+ NF+
Sbjct: 40  LPGGKVNPDESLKEGVAREVWEETGIT-MVPGDIAGQVNFE 79

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 23/173 (13%)

Query: 26  RTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVI--SSQKGKGML-FPKGG 82
           +       Y    +++    P++   V     +   D  +L++   +  GK +   P GG
Sbjct: 183 QDLVAENNYVIEYKRLWLKAPFKPNFVTVDALVIVND-HILMVQRKAHPGKDLWALP-GG 240

Query: 83  W-EIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS--------RAHNTDYQGYMFPL 133
           + E DE+I +A +RE  EE  +    E   + +   K         R   T     +F  
Sbjct: 241 FLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVRGR-TISHVGLFVF 299

Query: 134 LVQDQLAEW-PEKNVRSRKWMSVAEARKVCQ------HWWM-KEALDRLVMRL 178
                L E     + +  KW+S+    K         H+ +    L+    +L
Sbjct: 300 DQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLEDHYQIITILLEECGKKL 352

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 58  INEEDLEVLVI------SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGV 103
             E D  VL+        + KG+ + FP G  +  E+  +AALRE  EE  +
Sbjct: 43  TREADPRVLLTVRSSELPTHKGQ-IAFPGGSLDAGETPTQAALREAQEEVAL 93

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 62  DLEVLVI--SSQKGKGML-FPKGGW-EIDESIQEAALRETIEEAGVTGIVECEL 111
           D  +L+I        G    P GG  +  E ++ A  RE  EE G+       L
Sbjct: 39  DGRILLIKRKRAPEAGCWGLP-GGKVDWLEPVERAVCREIEEELGIALERATLL 91

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 5/79 (6%)

Query: 59  NEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW--- 115
            +  L+ + I  +       P G  +  E I     RE  EEA  +         E    
Sbjct: 135 GKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEK 194

Query: 116 --NFKSRAHNTDYQGYMFP 132
                S+ H   Y+GY+  
Sbjct: 195 LHKLFSQDHLVIYKGYVDD 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.94
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.92
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.91
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.9
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.9
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.9
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.88
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.88
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.88
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.88
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.87
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.87
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.87
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.87
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.87
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.87
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.86
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.86
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.86
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.86
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.86
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.86
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.86
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.86
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.85
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.85
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.85
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.85
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.85
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.85
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.85
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.85
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.84
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.84
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.84
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.83
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.83
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.83
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.83
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.83
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.82
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.82
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.82
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.81
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.81
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.81
3f13_A	163	Putative nudix hydrolase family member; structural	99.81
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.8
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.79
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.79
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.78
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.78
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.78
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.77
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.77
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.77
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.77
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.76
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.76
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.76
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.76
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.75
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.75
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.74
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.74
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.72
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.71
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.67
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.67
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.61
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.6
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.58
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.58
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.52
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.48
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	99.33
3bho_A	208	Cleavage and polyadenylation specificity factor su	99.26

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.94  E-value=3.2e-26  Score=170.19  Aligned_cols=126  Identities=24%  Similarity=0.292  Sum_probs=100.0

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEee
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~  118 (196)
                      +.+||+|+++++             +|||++++ .|.|.||||++|+|||+.+||+||++||||+.+..... ++.+.+.
T Consensus         4 ~~aag~vv~~~~-------------~vLL~~r~-~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~-l~~~~~~   68 (134)
T 3i7u_A            4 EFSAGGVLFKDG-------------EVLLIKTP-SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDY-IGEIHYW   68 (134)
T ss_dssp             EEEEEEEEEETT-------------EEEEEECT-TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEEEE
T ss_pred             EEEEEEEEEECC-------------EEEEEEeC-CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeee-eeeeeEE
Confidence            468899998853             79999875 47899999999999999999999999999999988777 7765544


Q ss_pred             eCCCC--ceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhc
Q 029277          119 SRAHN--TDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS  180 (196)
Q Consensus       119 ~~~~~--~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~  180 (196)
                      ....+  ....+++|.+....... .+.+|+.+++|++++++.+++.++..++++.+++..+.+
T Consensus        69 ~~~~~~~~~~~~~~f~~~~~~~~~-~~~~E~~~~~W~~~~e~~~~l~~~~~r~il~~a~~l~~k  131 (134)
T 3i7u_A           69 YTLKGERIFKTVKYYLMKYKEGEP-RPSWEVKDAKFFPIKEAKKLLKYKGDKEIFEKALKLKEK  131 (134)
T ss_dssp             EEETTEEEEEEEEEEEEEEEEECC-CCCTTSSEEEEEEHHHHHHHBCSHHHHHHHHHHHHHHHH
T ss_pred             ecCCCceEEEEEEEEEEEEcCCcC-cCChhheEEEEEEHHHHhhhcCChHHHHHHHHHHHHHHc
Confidence            33222  23345667776655433 355688999999999999999999999999988876654

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.92  E-value=3.1e-24  Score=162.43  Aligned_cols=137  Identities=26%  Similarity=0.240  Sum_probs=100.7

Q ss_pred             EEEEEEEEeeccCCcccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEee-
Q 029277           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK-  118 (196)
Q Consensus        41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~-  118 (196)
                      ++|+|+|+...   ...++.++.++||++++++ +.|.||||++|+|||+.+||+||++||||+.+..... ++.+... 
T Consensus         5 a~G~iifr~~~---~~~~~n~~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~   80 (155)
T 3u53_A            5 ACGLIIFRRCL---IPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTI-IEGFKREL   80 (155)
T ss_dssp             EEEEEEEEECC---CSSSSSCSEEEEEEEESSSSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEE-EEEEEEEE
T ss_pred             EeEEEEEcccc---ccceeCCCcEEEEEEecCCCCCEECCeeeccCCCCHHHHHHHHHHHHHCCcccccee-eeeEeeee
Confidence            78999998641   1112226789999998764 7899999999999999999999999999999876555 4433222 


Q ss_pred             -eCCCCceEEEEEEEEeecccc-ccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhcc
Q 029277          119 -SRAHNTDYQGYMFPLLVQDQL-AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ  181 (196)
Q Consensus       119 -~~~~~~~~~~~~f~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~  181 (196)
                       ...........+|.+...... ...+++|+.+++|++++|+.+++.++.++.+|..+.+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~ea~~~~~~~~~~~~L~~a~~~L~~~  145 (155)
T 3u53_A           81 NYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQFLCSI  145 (155)
T ss_dssp             EEEETTEEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCcceeEEEEEEEEEeccCCccCCCcceeEEEEeEHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence             122233344445555554432 233456789999999999999999999999999988888654

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.91  E-value=1.5e-22  Score=149.40  Aligned_cols=130  Identities=19%  Similarity=0.195  Sum_probs=99.2

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHhhceee---eec-ceee
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTG---IVE-CELL  112 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~---~~~-~~~l  112 (196)
                      .+.+|++++++.+   +      ++.+|||++++.+ +.|.||||++++||++.+||+||++||||+.+   ... .. +
T Consensus         2 ~~~~~~~vi~~~~---~------~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~-~   71 (138)
T 1ktg_A            2 VVKAAGLVIYRKL---A------GKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDC-H   71 (138)
T ss_dssp             CEEEEEEEEEEEE---T------TEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEE-E
T ss_pred             ceEEEEEEEEEec---C------CCcEEEEEEccCCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccc-c
Confidence            3568889999875   1      3468999998643 58999999999999999999999999999954   333 22 4


Q ss_pred             eeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHh
Q 029277          113 GEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT  179 (196)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~  179 (196)
                      +.+.+...  ......++|.+.........+..|+.+++|++++++.+++.++.++.+++.+.++++
T Consensus        72 ~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~  136 (138)
T 1ktg_A           72 ETLFYEAK--GKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFLA  136 (138)
T ss_dssp             EEEEEEET--TEEEEEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeC--CCceEEEEEEEEecCCcccCCCchhcEeEeccHHHHHHhhccchHHHHHHHHHHHhh
Confidence            44545443  334556677777665323334567899999999999999999999999998888764

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.90  E-value=2e-22  Score=151.04  Aligned_cols=134  Identities=22%  Similarity=0.217  Sum_probs=100.4

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee-eEEee
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG-EWNFK  118 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~-~~~~~  118 (196)
                      .+|+++++...   +      ++.+|||+++.+.|.|.||||++|+||++.+||+||++||||+.+......+. .+.+.
T Consensus         6 ~~v~vvi~~~~---~------~~~~vLl~~r~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   76 (149)
T 3son_A            6 FQVLVIPFIKT---E------ANYQFGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIP   76 (149)
T ss_dssp             CEEEEEEEEEC---S------SSEEEEEEEESSSSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEE
T ss_pred             eEEEEEEEEec---C------CCeEEEEEEEcCCCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeeccc
Confidence            46777777654   2      45689999998889999999999999999999999999999999876422122 12211


Q ss_pred             e---C-CCCceEEEEEEEEeecc--ccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhcccc
Q 029277          119 S---R-AHNTDYQGYMFPLLVQD--QLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQL  183 (196)
Q Consensus       119 ~---~-~~~~~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~~~  183 (196)
                      .   . ........++|.+....  .... ...|+.+++|++++++.+++..+..+.++..+.+++.....
T Consensus        77 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~~~  146 (149)
T 3son_A           77 NFHFSFNKPYVVPEYCFAIDLTSCSYQVT-LSLEHSELRWVSYESAIQLLEWDSNKTALYELNERLKNNDM  146 (149)
T ss_dssp             GGGTCSSSCSEEEEEEEEEECTTTGGGCC-CCTTEEEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             ceeeccCCceEeEEEEEEEEcCCCCCccc-CCCceeeEEEeCHHHHHHHhcCHHHHHHHHHHHHHHhhccc
Confidence            1   1 12234455678877763  2222 24678999999999999999999999999999998877644

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.90  E-value=2.6e-22  Score=145.86  Aligned_cols=122  Identities=27%  Similarity=0.262  Sum_probs=96.4

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeee
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS  119 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~  119 (196)
                      .++++++++.+            ++|||+++.+ |.|.||||+++.||++.+||.||++||||+.+..... ++.+.+..
T Consensus         3 ~~~~~vi~~~~------------~~vLl~~r~~-g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~   68 (126)
T 1vcd_A            3 LGAGGVVFNAK------------REVLLLRDRM-GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLP-LYPTRYVN   68 (126)
T ss_dssp             EEEEEEEECTT------------SCEEEEECTT-SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEE-EEEEEEEC
T ss_pred             eEEEEEEEcCC------------CEEEEEEECC-CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccE-EeEEEEec
Confidence            46778888753            2799999876 8899999999999999999999999999999988777 77776655


Q ss_pred             CCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHH
Q 029277          120 RAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  178 (196)
Q Consensus       120 ~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l  178 (196)
                      .  ......++|.+...... ..++.|..+++|++++++.+++..+.++.+++.+.+++
T Consensus        69 ~--~~~~~~~~~~~~~~~~~-~~~~~e~~~~~w~~~~el~~~~~~~~~~~~l~~~~~~l  124 (126)
T 1vcd_A           69 P--KGVEREVHWFLMRGEGA-PRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERL  124 (126)
T ss_dssp             T--TSCEEEEEEEEEEEESC-CCCCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHHHHS
T ss_pred             C--CceEEEEEEEEEEcCCC-CCCCcceeeeEEcCHHHHHHhhcChhHHHHHHHHHHhc
Confidence            3  23344566666544332 33456778999999999999999999999998877654

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.88  E-value=4.1e-22  Score=150.36  Aligned_cols=133  Identities=19%  Similarity=0.141  Sum_probs=101.6

Q ss_pred             cCCCceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecce
Q 029277           34 YQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE  110 (196)
Q Consensus        34 ~~~~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~  110 (196)
                      +......++++++++.+            ++|||+++.+   .+.|.||||+++.||++.+||+||++||||+.+.....
T Consensus        15 ~~~~~~~~v~~~i~~~~------------~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~   82 (156)
T 3gg6_A           15 LRKNVCYVVLAVFLSEQ------------DEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETL   82 (156)
T ss_dssp             CCTTCEEEEEEECBCTT------------SEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEE
T ss_pred             cCCceEEEEEEEEEeCC------------CEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeE
Confidence            33345556667776642            3899999877   47899999999999999999999999999999988877


Q ss_pred             eeeeEEeeeCCCCceEEEEEEEEeecccccc---CCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhccccC
Q 029277          111 LLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE---WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLH  184 (196)
Q Consensus       111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~~~~  184 (196)
                       ++.+..     ...+..++|.+........   .+++|..+++|++++++.+++..+.+++++..+...+....++
T Consensus        83 -~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~~~~~p  153 (156)
T 3gg6_A           83 -LSVEER-----GPSWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRAHDILHLVELAAQYRQQARHP  153 (156)
T ss_dssp             -EEEEES-----STTEEEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBSCTHHHHHHHHHHHHHHHHHCC
T ss_pred             -EEEEcC-----CCCEEEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccccchhHHHHHHHHHHHhhcCCCc
Confidence             666542     1223455676665433221   2346778999999999999999999999999888888776655

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.88  E-value=2.2e-22  Score=156.89  Aligned_cols=138  Identities=20%  Similarity=0.144  Sum_probs=102.2

Q ss_pred             CceEEEEEEEEEeeccCCcccccCC----ceEEEEEEEc----------CCCCEEecCcccCCCCCHHHHHHHHHHHhhc
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEE----DLEVLVISSQ----------KGKGMLFPKGGWEIDESIQEAALRETIEEAG  102 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~----~~~vLLv~~~----------~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtG  102 (196)
                      ..+++|+++++..+.         +    +++|||+++.          ..|.|.||||++++||++.+||+||++||||
T Consensus        25 p~~~~v~~vv~~~~~---------~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtG   95 (187)
T 3i9x_A           25 PDGYTSDMILTTVKE---------LNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETS   95 (187)
T ss_dssp             CSEEEEEEEEEEEEE---------ETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHC
T ss_pred             cccceEEEEEEEEcC---------CCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHC
Confidence            444889999988751         3    4689999983          2478999999999999999999999999999


Q ss_pred             eeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccc--cccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhc
Q 029277          103 VTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ--LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS  180 (196)
Q Consensus       103 l~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~  180 (196)
                      +.+..... ++.+.+............+|.+.....  ....+.+|..+++|++++++..+...+..+.+|..+++++++
T Consensus        96 l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~~~il~~a~~~l~~  174 (187)
T 3i9x_A           96 LTDIPLIP-FGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFDHLDMLKKAFSAITE  174 (187)
T ss_dssp             CCSCCCEE-EEEECCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTTHHHHHHHHHHHHHH
T ss_pred             CCCcceEE-EEEEcCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCccHHHHHHHHHHHHHh
Confidence            99888777 777654433333334444444443322  112234677899999999999876667889999999998877


Q ss_pred             cccC
Q 029277          181 QQLH  184 (196)
Q Consensus       181 ~~~~  184 (196)
                      ....
T Consensus       175 ~~~~  178 (187)
T 3i9x_A          175 EFLL  178 (187)
T ss_dssp             HHHT
T ss_pred             hhhc
Confidence            6543

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.88  E-value=1.1e-21  Score=154.31  Aligned_cols=137  Identities=13%  Similarity=0.136  Sum_probs=93.8

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhcee-eeecceeeeeE
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT-GIVECELLGEW  115 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~-~~~~~~~l~~~  115 (196)
                      .++.+|++++++.+           +.+|||++++..|.|.||||++|.|||+.+||+||++||||+. +.........+
T Consensus        43 ~~h~~~~~vv~~~~-----------~~~vLL~~r~~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~  111 (197)
T 3fcm_A           43 IAHLTSSAFAVNKE-----------RNKFLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFAL  111 (197)
T ss_dssp             SEEEEEEEEEECTT-----------SCEEEEEEETTTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEE
T ss_pred             CccEEEEEEEEECC-----------CCEEEEEEecCCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEE
Confidence            56778888888753           3489999998889999999999999999999999999999998 55422101122


Q ss_pred             Eeee-CC----C----CceEEEEEEEEeeccccc-cCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhccccC
Q 029277          116 NFKS-RA----H----NTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLH  184 (196)
Q Consensus       116 ~~~~-~~----~----~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~~~~  184 (196)
                      .+.. ..    +    ...+..+.|.+....... ..+.+|+.+++|++++++.+++..+.++.+++.+++++.++...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~l~~~~~~  190 (197)
T 3fcm_A          112 DVLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYCSEPHMIPIYEKLINKLKTQSKE  190 (197)
T ss_dssp             EEEEECCEEETTEEECCEEEEEEEEEEECCTTSCCCCCC----CEEEEEGGGHHHHCCCGGGHHHHHHHHHHHHC----
T ss_pred             EEeeecCccccCcccCCceeEEEEEEEEeCCCcccCCCcccccceEEccHHHHHhhcCCHHHHHHHHHHHHHHHhcccc
Confidence            2111 11    0    111222455555443322 23346789999999999999999999999999999999876533

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.88  E-value=2.7e-21  Score=144.98  Aligned_cols=121  Identities=20%  Similarity=0.250  Sum_probs=88.4

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCC---CEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGK---GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~---~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~  114 (196)
                      ++.+|++|+.+.             ++|||+++.+.+   .|.||||++++||++.+||+||++||||+.+..... ++.
T Consensus         7 ~~~~v~~ii~~~-------------~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~   72 (153)
T 2b0v_A            7 PNVTVAAVIEQD-------------DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVL-TGI   72 (153)
T ss_dssp             CEEEEEEECEET-------------TEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEE-EEE
T ss_pred             CCEEEEEEEeeC-------------CEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceE-EEE
Confidence            456666666542             179999987644   799999999999999999999999999999988777 777


Q ss_pred             EEeeeCCCCceEEEEEEEEeeccccc-cCCcCccceeEEEeHHHHHhh---ccchhHHHHHH
Q 029277          115 WNFKSRAHNTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWMSVAEARKV---CQHWWMKEALD  172 (196)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~---~~~~~~~~~l~  172 (196)
                      +.+..+.....+..++|.+....... ...+.|..+++|++++++.++   ...+.++.++.
T Consensus        73 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~l~  134 (153)
T 2b0v_A           73 YHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIE  134 (153)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHH
T ss_pred             EEEeCCCCCcEEEEEEEEEEeCCCCCCCCCCCCeeeEEEecHHHHhhhhcccCcHHHHHHHH
Confidence            76666543344555667776554322 234567799999999999985   34444444443

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.87  E-value=4.6e-21  Score=144.27  Aligned_cols=126  Identities=18%  Similarity=0.144  Sum_probs=97.4

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeeccee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~  111 (196)
                      .++.+|++++++.+            ++|||++|...     |.|.||||+++.||++.+||+||++||||+.+..... 
T Consensus         6 ~~~~~v~~vi~~~~------------~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~-   72 (153)
T 3grn_A            6 PYIISVYALIRNEK------------GEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDI-   72 (153)
T ss_dssp             CEEEEEEEEEECTT------------CCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSE-
T ss_pred             ceEEEEEEEEEcCC------------CcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceE-
Confidence            45778888888743            27999998764     7899999999999999999999999999999988877 


Q ss_pred             eeeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhc-cchhHHHHHHHHHHHH
Q 029277          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVC-QHWWMKEALDRLVMRL  178 (196)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~-~~~~~~~~l~~~~~~l  178 (196)
                      ++.+.+..+  ......++|.+........ +..|..+++|++++++.++. ..+.++.+++.+.+..
T Consensus        73 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~l~~~~  137 (153)
T 3grn_A           73 AGQVNFELT--EKKVIAIVFDGGYVVADVK-LSYEHIEYSWVSLEKILGMETLPAYFRDFFERFDREN  137 (153)
T ss_dssp             EEEEEEECS--SCEEEEEEEEEEECCCCCC-CCTTEEEEEEECHHHHTTCSSSCHHHHHHHHHHHHHH
T ss_pred             EEEEEEecC--CceEEEEEEEEEecCCcEe-cCCCcceEEEEEHHHhhhcccchHHHHHHHHHHhccc
Confidence            777765544  2344556666665443322 34677899999999999998 7888888887766543

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.87  E-value=1.4e-21  Score=148.23  Aligned_cols=123  Identities=15%  Similarity=0.148  Sum_probs=95.1

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~  113 (196)
                      .++.+|++|+++.+             +|||+++.+   .+.|.||||+++.||++.+||+||++||||+.+..... ++
T Consensus        27 ~~~~~v~~vi~~~~-------------~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~   92 (157)
T 4dyw_A           27 QPRVGCGAAIVRDG-------------RILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATL-LC   92 (157)
T ss_dssp             CCEEEEEEEEEETT-------------EEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEE-EE
T ss_pred             CceeEEEEEEEECC-------------EEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcE-EE
Confidence            46788888888832             799999874   47899999999999999999999999999999988877 77


Q ss_pred             eEEeeeCCCCceEEEEEEEEeecccccc-CCcCccceeEEEeHHHHHhhccchhHHHHHHHH
Q 029277          114 EWNFKSRAHNTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL  174 (196)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~  174 (196)
                      .+.+...........++|.+........ ...+|..+++|++++++.+. ..+..+.+|+.+
T Consensus        93 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~-l~~~~~~~l~~l  153 (157)
T 4dyw_A           93 VVDHIDAANGEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQP-LTHATRIALEQV  153 (157)
T ss_dssp             EEEEEETTTTEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCCSS-BCHHHHHHHHHH
T ss_pred             EEEeeccCCCcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHcccc-cCHHHHHHHHHH
Confidence            7776665444555666777765443332 23357799999999999884 456667777654

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.87  E-value=5.7e-22  Score=157.10  Aligned_cols=134  Identities=10%  Similarity=0.099  Sum_probs=104.2

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN  116 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~  116 (196)
                      .++.++++++++.+             +|||+++...|.|.||||++++||++.+||+||++||||+.+..... ++.+.
T Consensus        66 ~~~~~v~~vv~~~~-------------~vLLv~r~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~-l~~~~  131 (205)
T 3q1p_A           66 TPKVDIRAVVFQNE-------------KLLFVKEKSDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKL-LAIFD  131 (205)
T ss_dssp             CCEEEEEEEEEETT-------------EEEEEEC---CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEE
T ss_pred             CCcceEEEEEEECC-------------EEEEEEEcCCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceE-EEEEe
Confidence            56788888888632             79999988778999999999999999999999999999999988777 77665


Q ss_pred             eeeC---CCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhccccCC
Q 029277          117 FKSR---AHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHG  185 (196)
Q Consensus       117 ~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~~~~~  185 (196)
                      ....   ....+...++|.+........ ++.|..+++|++++++.++...+..++.+..+++.+.+..+++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~w~~~~el~~l~~~~~~~~~i~~~~~~~~~~~~~~  202 (205)
T 3q1p_A          132 KEKHQPSPSATHVYKIFIGCEIIGGEKK-TSIETEEVEFFGENELPNLSIARNTEDQIKEMFAYMKDPQKEK  202 (205)
T ss_dssp             HHHHSCCCCSSCEEEEEEEEEEEEECCC-CCTTSCCEEEECTTSCCCBCTTTCCHHHHHHHHHHHHCTTSCC
T ss_pred             ccccCCCCCCceEEEEEEEEEecCCccC-CCCcceEEEEEeHHHhhhcCCCccHHHHHHHHHHHHhCCCCCc
Confidence            4321   222344556677766543322 3467899999999999999988999999999999988877664

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.87  E-value=3.3e-21  Score=142.68  Aligned_cols=126  Identities=17%  Similarity=0.128  Sum_probs=91.8

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceE--EEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLE--VLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~--vLLv~~~~~-~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~  113 (196)
                      .++.++++++++.+          .+++  +||+++.+. +.|.||||++++|||+.+||+||++||||+.+..... ++
T Consensus         7 ~p~~~v~~vi~~~~----------~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~   75 (139)
T 2yyh_A            7 TPLLATDVIIRLWD----------GENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKL-MG   75 (139)
T ss_dssp             CCEEEEEEEEEEEE----------TTEEEEEEEEEECSSSCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEE-EE
T ss_pred             CCeEEEEEEEEEEc----------CCCcEEEEEEEecCCCCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceE-EE
Confidence            56788999999854          2336  999998764 5699999999999999999999999999999887776 66


Q ss_pred             eEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHH-hhccchhHHHHHHHHHH
Q 029277          114 EWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEAR-KVCQHWWMKEALDRLVM  176 (196)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~-~~~~~~~~~~~l~~~~~  176 (196)
                      .+.+.......+...++|.+.... . ..+.+|..+++|++++++. ..+..+ .+.++..+++
T Consensus        76 ~~~~~~~~~~~~~~~~~f~~~~~~-~-~~~~~e~~~~~W~~~~el~~~~l~~~-~~~~l~~~l~  136 (139)
T 2yyh_A           76 VYSDPERDPRAHVVSVVWIGDAQG-E-PKAGSDAKKVKVYRLEEIPLDKLVFD-HKKIILDFLK  136 (139)
T ss_dssp             EECCTTSCTTSCEEEEEEEEEEES-C-CCCCTTEEEEEEECTTSCCGGGBCTT-HHHHHHHHHH
T ss_pred             EECCCCcCCCceEEEEEEEEecCC-c-cCCCCCcceEEEEEHHHCCHhhcCCC-HHHHHHHHHh
Confidence            665433222335566677777632 2 2245677899999999998 333333 4556655543

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.87  E-value=6.5e-21  Score=141.97  Aligned_cols=125  Identities=22%  Similarity=0.333  Sum_probs=92.6

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN  116 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~  116 (196)
                      ..+..+++++++.+           +++|||+++. .|.|.||||+++.||++.+||+||++||||+.+..... ++.+.
T Consensus        16 ~~~~~~~~vi~~~~-----------~~~vLl~~r~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~   82 (148)
T 2azw_A           16 QTRYAAYIIVSKPE-----------NNTMVLVQAP-NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCY-LGEAD   82 (148)
T ss_dssp             EECCEEEEECEEGG-----------GTEEEEEECT-TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEE
T ss_pred             eeeeEEEEEEECCC-----------CCeEEEEEcC-CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeE-EEEEE
Confidence            34567778888752           2379999874 58999999999999999999999999999999988776 66553


Q ss_pred             -eeeCCCC-c--eEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHH
Q 029277          117 -FKSRAHN-T--DYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  175 (196)
Q Consensus       117 -~~~~~~~-~--~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~  175 (196)
                       +...... .  ....++|.+....... .+.+|..+++|++++++.+++..+.++.++..++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~  144 (148)
T 2azw_A           83 EYFYSNHRQTAYYNPGYFYVANTWRQLS-EPLERTNTLHWVAPEEAVRLLKRGSHRWAVEKWL  144 (148)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEEEEEECS-SCC-CCSEEEEECHHHHHHHBSCHHHHHHHHHHH
T ss_pred             EEEcCCCCCcceEEEEEEEEEEcCcCCc-CCCCceeeEEEeeHHHHHhhhcchhHHHHHHHHH
Confidence             2222222 1  2345667666544322 2345678999999999999999999999888766

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.87  E-value=1.8e-21  Score=166.49  Aligned_cols=143  Identities=24%  Similarity=0.263  Sum_probs=105.0

Q ss_pred             EEEEEEEEEeeccC----C-------cccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeec
Q 029277           40 QVVGCIPYRYKCVK----Q-------SLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE  108 (196)
Q Consensus        40 ~~vgaii~~~~~~~----~-------g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~  108 (196)
                      .++|+|+|+.....    +       +.+++.++.+|||++++..+.|.||||++|+|||+.+||+||++||||+.+...
T Consensus         4 ~aag~i~~r~~~~~~i~~~~~i~~~~~~~i~~~~~~vLLv~r~~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~   83 (364)
T 3fjy_A            4 EAAGGIVWRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPKYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLG   83 (364)
T ss_dssp             CEEEEEEEEECTTSHHHHCGGGGGGSCHHHHHTTEEEEEEEETTTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEE
T ss_pred             cccCcEEEEeeccccccCCccccccccccccCCceEEEEEEcCCCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeec
Confidence            57899999964110    0       011222567999999988789999999999999999999999999999999887


Q ss_pred             ceeeeeEEeeeCCCC-----------ceEEEEEEEEeecccc----------c--cCCcCccceeEEEeHHHHHhhccch
Q 029277          109 CELLGEWNFKSRAHN-----------TDYQGYMFPLLVQDQL----------A--EWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       109 ~~~l~~~~~~~~~~~-----------~~~~~~~f~~~~~~~~----------~--~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      .. ++.+.+.....+           .....++|.+......          +  ....+|+.+++|++++++.+++.++
T Consensus        84 ~~-l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~  162 (364)
T 3fjy_A           84 PY-LCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHS  162 (364)
T ss_dssp             EE-EEEEC---------------------CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCH
T ss_pred             cc-cceEEEeccCCCcccccccccccCceEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcch
Confidence            77 776665544221           1345566766654432          1  1234678999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcccc
Q 029277          166 WMKEALDRLVMRLTSQQL  183 (196)
Q Consensus       166 ~~~~~l~~~~~~l~~~~~  183 (196)
                      ..+.++..+.++++.+..
T Consensus       163 ~~r~il~~~~~~l~~g~~  180 (364)
T 3fjy_A          163 TDKDTLAVFVDRVQEGAA  180 (364)
T ss_dssp             HHHHHHHHHHHHHHTTGG
T ss_pred             hhHHHHHHHHHHhccCCC
Confidence            999999999999987764

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.86  E-value=4.6e-21  Score=142.78  Aligned_cols=127  Identities=18%  Similarity=0.222  Sum_probs=93.0

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeec--ceeeeeE
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE--CELLGEW  115 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~--~~~l~~~  115 (196)
                      +.+|++++++.+           ++++||++++. .|.|.||||+++.||++.+||+||++||||+.+...  .. ++..
T Consensus         9 ~~~v~~~i~~~~-----------~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~-~~~~   76 (150)
T 2o1c_A            9 PVSILVVIYAQD-----------TKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTL-IDCQ   76 (150)
T ss_dssp             SEEEEEEEEETT-----------TCEEEEEECSSSTTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCE-EEEE
T ss_pred             ceEEEEEEEeCC-----------CCEEEEEEecCCCCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeE-Eeee
Confidence            357888888752           23899999876 588999999999999999999999999999998664  22 3322


Q ss_pred             E---e--------eeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHH
Q 029277          116 N---F--------KSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  178 (196)
Q Consensus       116 ~---~--------~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l  178 (196)
                      .   |        ..+........++|.+........ ...|..+++|++++++.++...+.++.+++.+.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l  149 (150)
T 2o1c_A           77 RTVEFEIFSHLRHRYAPGVTRNTESWFCLALPHERQI-VFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINA  149 (150)
T ss_dssp             EEEEEECCGGGGGGBCTTCCEEEEEEEEEEESSCCCC-CCSSSSCEEEEEHHHHHHHCSCHHHHHHHHHHTTC-
T ss_pred             ceeeeeeecccccccCCCCcceEEEEEEEEcCCCCCc-ChhHhhccEeecHHHHHhhhcCHHHHHHHHHHHHhc
Confidence            1   1        011122345667787776543322 236789999999999999999898888888776543

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.86  E-value=1.5e-21  Score=154.77  Aligned_cols=133  Identities=11%  Similarity=0.119  Sum_probs=104.6

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN  116 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~  116 (196)
                      .++..+++++++.+             +|||+++. .+.|.||||++++||++.+||+||++||||+.+..... ++.+.
T Consensus        68 ~~~~~v~~vv~~~~-------------~vLLvrr~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~~  132 (206)
T 3o8s_A           68 TPKLDTRAAIFQED-------------KILLVQEN-DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRV-VAILD  132 (206)
T ss_dssp             CCEEEEEEEEEETT-------------EEEEEECT-TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEE-EEEEE
T ss_pred             CCCccEEEEEEECC-------------EEEEEEec-CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeE-EEEEe
Confidence            56778888888742             79999987 78999999999999999999999999999999988777 77765


Q ss_pred             eeeCC---CCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhccccCC
Q 029277          117 FKSRA---HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHG  185 (196)
Q Consensus       117 ~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~~~~~  185 (196)
                      +....   .......++|.+........ +..|..+++|++++++.++...+.+++.++.+++.+++..+++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~w~~~~el~~l~~~~~~~~~l~~~~~~~~~~~~~~  203 (206)
T 3o8s_A          133 KHKNNPAKSAHRVTKVFILCRLLGGEFQ-PNSETVASGFFSLDDLPPLYLGKNTAEQLALCLEASRSEHWET  203 (206)
T ss_dssp             HHHHCC-----CEEEEEEEEEEEEECCC-CCSSCSEEEEECTTSCCCBCTTTCCHHHHHHHHHHHHCSSCCC
T ss_pred             ccccCCCCCCceEEEEEEEEEecCCeec-CCCCceEEEEEeHHHhhhccCCCchHHHHHHHHHHHHCCCCCC
Confidence            32211   12234455666665543322 3467899999999999999988999999999999998887764

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.86  E-value=3.9e-21  Score=144.97  Aligned_cols=133  Identities=14%  Similarity=0.066  Sum_probs=95.7

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-------CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecce
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-------GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE  110 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-------~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~  110 (196)
                      .+.++++++++.+            +++||+++.+       .+.|.||||+++.||++.+||+||++||||+.+.....
T Consensus        12 ~~~~~~~vi~~~~------------~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~   79 (159)
T 1sjy_A           12 ELRAAGVVLLNER------------GDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKF   79 (159)
T ss_dssp             CEEEEEEEEBCTT------------CCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEE
T ss_pred             EEEeEEEEEEeCC------------CCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEE
Confidence            4567777777642            2799999874       27899999999999999999999999999999988777


Q ss_pred             eeeeEEeeeCCCCceEEEEEEEEeecccc-ccC-CcCccceeEEEeHHHHHhhccchhHHH--HHHHHHHHHhccccC
Q 029277          111 LLGEWNFKSRAHNTDYQGYMFPLLVQDQL-AEW-PEKNVRSRKWMSVAEARKVCQHWWMKE--ALDRLVMRLTSQQLH  184 (196)
Q Consensus       111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~--~l~~~~~~l~~~~~~  184 (196)
                       ++.+.+..+.. .....++|.+...... ... ..+|+.++.|++++++.+++....++.  .+..+.+.+++++++
T Consensus        80 -l~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~p  155 (159)
T 1sjy_A           80 -LGAYLGRFPDG-VLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAGQIRMYQTKLFYADALREKGFP  155 (159)
T ss_dssp             -EEEEEEECTTS-CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTTCBSCTHHHHHHHHHHHHHTCC
T ss_pred             -EEEEecccCCC-ceEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHHhhhcccchhhhhHHHHHHHHhcCCCC
Confidence             77766554332 4556677877765443 332 456779999999999998876543321  222244555655554

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.86  E-value=2.8e-21  Score=146.43  Aligned_cols=126  Identities=18%  Similarity=0.118  Sum_probs=90.8

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeE--
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW--  115 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~--  115 (196)
                      .+.+|++++++.+             +|||+++++.|.|.||||++++|||+.+||+||++||||+.+..... ++.+  
T Consensus         5 ~~~~v~~vi~~~~-------------~vLL~~r~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~   70 (159)
T 3f6a_A            5 RHFTVSVFIVCKD-------------KVLLHLHKKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNP-IDINLK   70 (159)
T ss_dssp             SCEEEEEEEEETT-------------EEEEEECSSSCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCC-CCHHHH
T ss_pred             ceEEEEEEEEECC-------------EEEEEEcCCCCeEECCccCccCCCCHHHHHHHHHHHHhCCCceeccc-cccccc
Confidence            3567888888732             79999998889999999999999999999999999999999887666 4321  


Q ss_pred             ---------Eeee--------CCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhc-cchhHHHHHHHHHHH
Q 029277          116 ---------NFKS--------RAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVC-QHWWMKEALDRLVMR  177 (196)
Q Consensus       116 ---------~~~~--------~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~-~~~~~~~~l~~~~~~  177 (196)
                               .+..        ......+..++|.+...........+|..+++|++++++.++. .....+.+.+.+.+.
T Consensus        71 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~  150 (159)
T 3f6a_A           71 KSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLKNAHNIQENILVMATEALDL  150 (159)
T ss_dssp             HHHHHTTCEEECCCSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTCSSSCHHHHHHHHHHHHH
T ss_pred             ccccccccccccCccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHhhCcCCChhHHHHHHHHHHH
Confidence                     0000        0012234556777776654444345678999999999999987 555555555554443

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.86  E-value=1.3e-21  Score=148.15  Aligned_cols=122  Identities=16%  Similarity=0.127  Sum_probs=90.0

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE---
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN---  116 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~---  116 (196)
                      .+|++++++.+             +|||+++++.|.|.||||++++|||+.+||+||++||||+.+..... ++.+.   
T Consensus         2 ~~~~~vi~~~~-------------~vLL~~r~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~   67 (156)
T 1k2e_A            2 IVTSGVLVENG-------------KVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGF-TYGIIDEN   67 (156)
T ss_dssp             EEEEEECEETT-------------EEEEEECTTTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCC-CCCCBSSS
T ss_pred             eEEEEEEEECC-------------EEEEEEEcCCCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccc-eeeecccc
Confidence            46778887731             79999988778999999999999999999999999999999887654 32111   


Q ss_pred             -------------e-eeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhccc
Q 029277          117 -------------F-KSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ  182 (196)
Q Consensus       117 -------------~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~~  182 (196)
                                   + ..+.........+|.+...       ..|..+++|++++++.++...+.++.+++.+.+.+.+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-------~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~g  140 (156)
T 1k2e_A           68 AVERPMPLVILEEVVKYPEETHIHFDLIYLVKRV-------GGDLKNGEWIDVREIDRIETFPNVRKVVSLALSTLYRLG  140 (156)
T ss_dssp             EEECCCCSEEEEEEEECSSCEEEEEEEEEEEEEE-------EECCCSCEEEEGGGGGGSCBSTTHHHHHHHHHHHHHHHH
T ss_pred             cccccccceeeeeeecCCCCceEEEEEEEEEEec-------CCcEeeeEEeCHHHHhcCCCChHHHHHHHHHHHHHHhhc
Confidence                         0 1111111222334555432       235678999999999998888999999999988776554

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.86  E-value=2e-21  Score=157.73  Aligned_cols=135  Identities=19%  Similarity=0.211  Sum_probs=102.8

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCC--CCCHHHHHHHHHHHhhceeeeeccee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEI--DESIQEAALRETIEEAGVTGIVECEL  111 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~--gEs~~~Aa~REl~EEtGl~~~~~~~~  111 (196)
                      .+.++|+++|+..+   +      ++.+|||+++..   .|.|.||||++++  |||+.+||+||++||||+.+..... 
T Consensus        20 ~p~v~v~~vi~~~~---~------~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~-   89 (240)
T 3gz5_A           20 AQLLTVDAVLFTYH---D------QQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQ-   89 (240)
T ss_dssp             -CEEEEEEEEEEEE---T------TEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEE-
T ss_pred             CCccEEEEEEEEEe---C------CCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceee-
Confidence            56688999998754   2      456999999875   3789999999999  9999999999999999999888777 


Q ss_pred             eeeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhcc
Q 029277          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ  181 (196)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~  181 (196)
                      ++.+.............+.|.+...........+|..++.|++++++........++.++..++++++.+
T Consensus        90 l~~~~~~~r~~~~~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~~~l~~dh~~il~~a~~rlr~k  159 (240)
T 3gz5_A           90 LCTVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQARERLTQK  159 (240)
T ss_dssp             EEEEEESSSSTTSCEEEEEEEEECCHHHHHHHHTTCTTEEEEEHHHHTTSCCSTTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCccCCCceEEEEEEEEEecccccCCCCCcccceEEecHHHcccCCcchhHHHHHHHHHHHHHHh
Confidence            7777665444445566667776655432222345778999999999986544456788888888877664

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.86  E-value=8.2e-21  Score=140.85  Aligned_cols=121  Identities=21%  Similarity=0.106  Sum_probs=91.6

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcC------CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceee
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK------GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELL  112 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~------~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l  112 (196)
                      ..++++|+++.+             +|||++|.+      .|.|.||||+++.||++.+||.||++||||+.+..... +
T Consensus         6 ~~~v~~vi~~~~-------------~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~-~   71 (140)
T 3gwy_A            6 IEVVAAVIRLGE-------------KYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEK-L   71 (140)
T ss_dssp             EEEEEEEEEETT-------------EEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEE-E
T ss_pred             EEEEEEEEEeCC-------------EEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceE-E
Confidence            446667776631             799999864      35799999999999999999999999999999988877 7


Q ss_pred             eeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHH
Q 029277          113 GEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR  177 (196)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~  177 (196)
                      +.+.+...  ......++|.+.......  ...|..+++|++++++.++...+..+.+++.+.+.
T Consensus        72 ~~~~~~~~--~~~~~~~~f~~~~~~~~~--~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~  132 (140)
T 3gwy_A           72 LTVHHTYP--DFEITMHAFLCHPVGQRY--VLKEHIAAQWLSTREMAILDWAEADKPIVRKISEQ  132 (140)
T ss_dssp             EEEECCCS--SCCEEEEEEEEEECCSCC--CCCSSCEEEEECHHHHTTSCBCGGGHHHHHHHHC-
T ss_pred             EEEEEEeC--CceEEEEEEEEEecCCcc--cccccceeEeccHHHHhhCCCCcccHHHHHHHHhC
Confidence            77665443  344556777777665422  23577899999999999998888888888765543

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.86  E-value=1.2e-21  Score=157.63  Aligned_cols=133  Identities=14%  Similarity=0.194  Sum_probs=98.3

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~  113 (196)
                      .++++|+++|+..+   +      ++++|||+++..   .|.|.||||++++|||+.+||+||++||||+.+..... ++
T Consensus        11 ~p~v~v~~vi~~~~---~------~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~-l~   80 (226)
T 2fb1_A           11 TFYLGIDCIIFGFN---E------GEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQ-VG   80 (226)
T ss_dssp             CEEEEEEEEEEEEE---T------TEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEE-EE
T ss_pred             CCeEEEEEEEEEEe---C------CCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEE-EE
Confidence            56788999999754   2      456899999876   37899999999999999999999999999999887777 77


Q ss_pred             eEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhcc
Q 029277          114 EWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ  181 (196)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~  181 (196)
                      .+.........+...+.|.+.........+.+|..+++|++++++.++..+  ...++..++.+++.+
T Consensus        81 ~~~~~~r~~~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~l~~d--h~~il~~a~~rlr~~  146 (226)
T 2fb1_A           81 AFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPALIFD--HPEMVDKAREMMKQK  146 (226)
T ss_dssp             EECCTTSSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCCBSTT--HHHHHHHHHHHHHHH
T ss_pred             EeCCCCcCCCceEEEEEEEEEecCcccccCCccccceEEEEHHHhhhccCC--HHHHHHHHHHHHHhh
Confidence            665433333344555567766554322223356789999999999876544  457777777766553

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.85  E-value=2.6e-21  Score=147.24  Aligned_cols=126  Identities=18%  Similarity=0.156  Sum_probs=97.1

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~  113 (196)
                      .++.++.+++++.           +.++|||++|.+.   |.|.||||++++||++.+||+||++||||+.+..... ++
T Consensus         8 ~~~~~v~~vi~~~-----------~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~   75 (161)
T 3exq_A            8 PVELVTMVMVTDP-----------ETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTF-CG   75 (161)
T ss_dssp             CEEEEEEEEEBCT-----------TTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEE-EE
T ss_pred             CceEEEEEEEEeC-----------CCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcE-EE
Confidence            3566777777664           2247999987753   5788999999999999999999999999999988777 78


Q ss_pred             eEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHH
Q 029277          114 EWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  176 (196)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  176 (196)
                      .+.+..+........++|.+......  ....|..+++|++++++.++...+..+.+++.+.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  136 (161)
T 3exq_A           76 TCEWFDDDRQHRKLGLLYRASNFTGT--LKASAEGQLSWLPITALTRENSAASLPEFLQVFTG  136 (161)
T ss_dssp             EEEEECSSCSSEEEEEEEEECCEESC--CCGGGTTTEEEECGGGCCTTTBCTTHHHHHHHHTT
T ss_pred             EEecccCCCCeEEEEEEEEEeccCCc--cCCCccceEEEeeHHHhhhCccChHHHHHHHHHhh
Confidence            77766644445566667776654432  22456688999999999998888888888877665

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.85  E-value=1e-20  Score=142.80  Aligned_cols=125  Identities=17%  Similarity=0.142  Sum_probs=91.2

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeee--eccee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI--VECEL  111 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~--~~~~~  111 (196)
                      .++.+|++++++.+            ++|||+++.+   .|.|.||||++++||++.+||+||++||||+.+.  .... 
T Consensus        16 ~~~~~v~~vi~~~~------------~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~-   82 (160)
T 1rya_A           16 TPLVSLDFIVENSR------------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQF-   82 (160)
T ss_dssp             SCEEEEEEEEECTT------------SCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEE-
T ss_pred             CcEEEEEEEEEcCC------------CEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceE-
Confidence            45678888888742            2799999876   4789999999999999999999999999999964  3444 


Q ss_pred             eeeEEeeeCCC------CceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhh-ccchhHHHHHHHH
Q 029277          112 LGEWNFKSRAH------NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKV-CQHWWMKEALDRL  174 (196)
Q Consensus       112 l~~~~~~~~~~------~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~-~~~~~~~~~l~~~  174 (196)
                      ++.+.+.....      ..+...++|.+.........+..|..+++|++++++.++ ...+..+++++..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~~  152 (160)
T 1rya_A           83 YGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAE  152 (160)
T ss_dssp             EEEEEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTTBCHHHHGGGCHH
T ss_pred             EEEEeEEEcccccCCCcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhhccccCHHHHHHHHHH
Confidence            66666544322      124556677777654433334567899999999999987 3456666666543

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.85  E-value=1.3e-20  Score=141.55  Aligned_cols=122  Identities=19%  Similarity=0.285  Sum_probs=87.8

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeE
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW  115 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~--~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~  115 (196)
                      ++.+|++|+.+.+             +|||+++..  .+.|.||||+++.|||+.+||+||++||||+.+..... ++.+
T Consensus         4 p~~~v~~ii~~~~-------------~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~   69 (153)
T 3shd_A            4 PHVTVACVVHAEG-------------KFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHF-IRMH   69 (153)
T ss_dssp             CEEEEEEEEEETT-------------EEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEE-EEEE
T ss_pred             CceEEEEEEEeCC-------------EEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcE-EEEE
Confidence            4566666665531             799999853  36799999999999999999999999999999988777 7777


Q ss_pred             EeeeCCCCceEEEEEEEEeecccc-ccCCcCccceeEEEeHHHHHhh--ccchhHHHHHHHH
Q 029277          116 NFKSRAHNTDYQGYMFPLLVQDQL-AEWPEKNVRSRKWMSVAEARKV--CQHWWMKEALDRL  174 (196)
Q Consensus       116 ~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~--~~~~~~~~~l~~~  174 (196)
                      .+..+. ......++|.+...... ....+.|..+++|++++++...  ...+..+.++..+
T Consensus        70 ~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~  130 (153)
T 3shd_A           70 QWIAPD-KTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCY  130 (153)
T ss_dssp             EECCTT-SCCEEEEEEEEECSSCCCCCCCSTTCCEEEEECHHHHHTCSCBSSTHHHHHHHHH
T ss_pred             EEecCC-CceEEEEEEEEEccccCcCCCCcccceeeEEecHHHhhccccccCchHHHHHHHH
Confidence            665553 33455677877766543 2334567899999999999322  2345445555443

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.85  E-value=4.5e-21  Score=150.92  Aligned_cols=118  Identities=31%  Similarity=0.574  Sum_probs=84.4

Q ss_pred             ccCC-CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecce
Q 029277           33 RYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE  110 (196)
Q Consensus        33 ~~~~-~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~  110 (196)
                      .|.. .++..+++|+++.+          ++++|||+++.+ .+.|.||||++|+||++++||+||++||||+.+.....
T Consensus        33 ~~~~~~~~~~~~~vi~~~~----------~~~~vLLv~r~~~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~  102 (194)
T 2fvv_A           33 TYDGDGYKKRAACLCFRSE----------SEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRL  102 (194)
T ss_dssp             CBCTTSCEEEEEEEEESST----------TCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEE
T ss_pred             ccccCCccccEEEEEEEEC----------CCCEEEEEEEeCCCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceE
Confidence            4443 67888888888643          345899999865 47899999999999999999999999999999988776


Q ss_pred             eeeeEEeeeCCCCceEEEEEEEEeeccccccCCc--CccceeEEEeHHHHHhhccch
Q 029277          111 LLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPE--KNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~--~e~~~~~W~~~~el~~~~~~~  165 (196)
                       ++.+.+.  ..  ....++|.+.........+.  .+..+++|++++++.+++...
T Consensus       103 -l~~~~~~--~~--~~~~~~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~~l~~~  154 (194)
T 2fvv_A          103 -VGIFENQ--ER--KHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYH  154 (194)
T ss_dssp             -EEEEEET--TT--TEEEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTTT
T ss_pred             -EEEEEcC--CC--ceEEEEEEEEEccccCCCCCcccccceEEEEEHHHHHHHHhcC
Confidence             7776532  21  22345555554322211111  123689999999999886543

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.85  E-value=1.8e-20  Score=146.38  Aligned_cols=130  Identities=19%  Similarity=0.200  Sum_probs=100.6

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~  113 (196)
                      .++.+|++|+++.+             +|||+++.+   .+.|.||||+++.||++++||+||++||||+.+..... ++
T Consensus        38 ~~~~~v~~ii~~~~-------------~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~  103 (189)
T 3cng_A           38 NPKVIVGCIPEWEN-------------KVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIREL-YA  103 (189)
T ss_dssp             CCEEEEEEEEEETT-------------EEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEE-EE
T ss_pred             CCceEEEEEEEeCC-------------EEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCcccccee-EE
Confidence            46678888888732             799999876   47899999999999999999999999999999887665 65


Q ss_pred             eEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHH-hhccchhHHHHHHHHHHHHhccccCC
Q 029277          114 EWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEAR-KVCQHWWMKEALDRLVMRLTSQQLHG  185 (196)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~-~~~~~~~~~~~l~~~~~~l~~~~~~~  185 (196)
                      .+.+.    ......++|.+....... .+..|..+++|++++++. ..+..+..+.+|..+++....+.++.
T Consensus       104 ~~~~~----~~~~~~~~f~~~~~~~~~-~~~~E~~~~~W~~~~el~~~~l~~~~~~~~l~~~l~~~~~~~~~~  171 (189)
T 3cng_A          104 VYSLP----HISQVYMLFRAKLLDLDF-FPGIESLEVRLFGEQEIPWNDIAFRVIHDPLKRYMEERHHGQPAF  171 (189)
T ss_dssp             EEEEG----GGTEEEEEEEEEECCSCC-CCCTTEEEEEEECTTTCCGGGBSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred             EEecC----CCcEEEEEEEEEeCCCcc-CCCccceeEEEECHHHcCcccccChHHHHHHHHHHHhccCCCcce
Confidence            54432    223556677777654332 245678899999999998 45667888999998888777766653

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.85  E-value=5.2e-21  Score=146.47  Aligned_cols=123  Identities=15%  Similarity=0.096  Sum_probs=90.0

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeE
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW  115 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~  115 (196)
                      ..+..|++|+++.+             +|||+++.+ .+.|.||||+++.||++.+||+||++||||+.+..... ++.+
T Consensus        21 ~~~~~v~~ii~~~~-------------~vLL~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~   86 (171)
T 3id9_A           21 IMQVRVTGILIEDE-------------KVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKL-LYVC   86 (171)
T ss_dssp             -CEEEEEEEEEETT-------------EEEEEECSSTTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEE-EEEE
T ss_pred             ceEEEEEEEEEECC-------------EEEEEEEECCCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceE-EEEE
Confidence            56777888887642             799999876 58899999999999999999999999999999987776 6666


Q ss_pred             EeeeCCCCceEEEEEEEEeeccccccC-----CcCccceeEEEeHHHHHhhccchhHHHHHHHHH
Q 029277          116 NFKSRAHNTDYQGYMFPLLVQDQLAEW-----PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  175 (196)
Q Consensus       116 ~~~~~~~~~~~~~~~f~~~~~~~~~~~-----~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~  175 (196)
                      .+...  ......++|.+.........     ..+|..+++|++++++.++...+.++.+++..+
T Consensus        87 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~l~~~~  149 (171)
T 3id9_A           87 DKPDA--SPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYGFSETFINLISGGL  149 (171)
T ss_dssp             EETTS--SSCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGGTCCTTCSHHHHHGG
T ss_pred             cccCC--CCcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhCCCCHHHHHHHHHhh
Confidence            54332  22334445655544332221     235678999999999999988888888877653

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.85  E-value=1.2e-20  Score=145.96  Aligned_cols=110  Identities=16%  Similarity=0.028  Sum_probs=86.9

Q ss_pred             EEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccccc
Q 029277           64 EVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA  140 (196)
Q Consensus        64 ~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~  140 (196)
                      +|||+++.+   .|.|.||||++++||++.+||+||++||||+.+..... ++.+.+...........++|.+.......
T Consensus        37 ~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~~~~~~~~~~~~f~~~~~~~~~  115 (176)
T 3q93_A           37 RVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHK-VGQIVFEFVGEPELMDVHVFCTDSIQGTP  115 (176)
T ss_dssp             EEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEE-EEEEEEEETTCSCEEEEEEEEESCEESCC
T ss_pred             EEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEE-EEEEEEEcCCCCcEEEEEEEEEECCCCCc
Confidence            899998865   37899999999999999999999999999999987777 88877766654455566777776443322


Q ss_pred             cCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHH
Q 029277          141 EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  176 (196)
Q Consensus       141 ~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  176 (196)
                        ...+..+++|++++++..+...+..+.++..+++
T Consensus       116 --~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  149 (176)
T 3q93_A          116 --VESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQ  149 (176)
T ss_dssp             --CCCSSEEEEEEETTCCCGGGBCTTHHHHHHHHHT
T ss_pred             --CCCcceeeEEeeHHHccccccCcchHHHHHHHHc
Confidence              2345677899999999988888888777766554

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.85  E-value=9.8e-21  Score=148.04  Aligned_cols=112  Identities=18%  Similarity=0.157  Sum_probs=86.6

Q ss_pred             EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCc---eEEEEEEEEeeccccc
Q 029277           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNT---DYQGYMFPLLVQDQLA  140 (196)
Q Consensus        64 ~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~  140 (196)
                      +|||+++...|.|.+|||++++||++.+||+||++||||+.+..... ++.+.+.......   .+..++|.+.......
T Consensus        16 ~vLL~~r~~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~a~~~~~~~   94 (188)
T 3fk9_A           16 QVLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPEL-KGIFSMVIFDEGKIVSEWMLFTFKATEHEGEM   94 (188)
T ss_dssp             EEEEEECTTTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEE-EEEEEEEEEETTEEEEEEEEEEEEESCEESCC
T ss_pred             EEEEEEeCCCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceE-EEEEEEEecCCCcceEEEEEEEEEEECCCCCC
Confidence            79999988789999999999999999999999999999999988776 7777666543332   2245566665443322


Q ss_pred             cCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHH
Q 029277          141 EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR  177 (196)
Q Consensus       141 ~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~  177 (196)
                       .+..+..+++|++++++.++...+.++.++..+++.
T Consensus        95 -~~~~e~~~~~W~~~~el~~~~l~~~~~~~l~~~l~~  130 (188)
T 3fk9_A           95 -LKQSPEGKLEWKKKDEVLELPMAAGDKWIFKHVLHS  130 (188)
T ss_dssp             -CSEETTEEEEEEEGGGGGGSCCCHHHHHHHHHHTTC
T ss_pred             -cCCCCCEeEEEEEHHHhhhCCCCHHHHHHHHHHHcC
Confidence             233455799999999999988888888888776553

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.84  E-value=3.2e-20  Score=138.79  Aligned_cols=111  Identities=19%  Similarity=0.124  Sum_probs=89.3

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (196)
                      +|||++|...    |.|.||||+++.||++.+||.||+.||||+.+..... ++.+.+..+.  .....++|.+......
T Consensus        34 ~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~  110 (153)
T 3ees_A           34 KILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGEL-KLACTHSYGD--VGILILFYEILYWKGE  110 (153)
T ss_dssp             EEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCE-EEEEEEEETT--EEEEEEEEEECEEESC
T ss_pred             EEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCce-EEEEEEecCC--CeEEEEEEEEEECCCC
Confidence            7999998764    7899999999999999999999999999999988877 7776665542  3344567776654432


Q ss_pred             ccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHh
Q 029277          140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT  179 (196)
Q Consensus       140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~  179 (196)
                        ....|..++.|++++++.++...+.++.+++.+.+.+.
T Consensus       111 --~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~  148 (153)
T 3ees_A          111 --PRAKHHMMLEWIHPEELKHRNIPEANRKILHKIYKALG  148 (153)
T ss_dssp             --CCCSSSSEEEEECGGGGGGSCCCHHHHTTHHHHHHHTT
T ss_pred             --cCCCccceEEEecHHHhhhCCCCcchHHHHHHHHHhhc
Confidence              23456789999999999999888888999988877654

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.84  E-value=8.8e-20  Score=134.56  Aligned_cols=110  Identities=17%  Similarity=0.071  Sum_probs=86.2

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (196)
                      +|||+++.+.    |.|.||||+++.||++.+||.||++||||+.+..... ++.+.+..+.  .....++|.+......
T Consensus        21 ~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~   97 (140)
T 2rrk_A           21 KILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEY-VASHQREVSG--RIIHLHAWHVPDFHGT   97 (140)
T ss_dssp             EEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEE-EEEEEEEETT--EEEEEEEEEESEEEEC
T ss_pred             EEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccE-EEEEEEecCC--cEEEEEEEEEEeeCCC
Confidence            7999988653    7899999999999999999999999999999987766 7776665542  2344566766544322


Q ss_pred             ccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHH
Q 029277          140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  178 (196)
Q Consensus       140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l  178 (196)
                        ....|..++.|++++++.++...+.++.+++.+.+..
T Consensus        98 --~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~r  134 (140)
T 2rrk_A           98 --LQAHEHQALVWCSPEEALQYPLAPADIPLLEAFMALR  134 (140)
T ss_dssp             --CCCSSCSCEEEECHHHHTTSCCCTTHHHHHHHHHHHH
T ss_pred             --cCCCccceeEEeCHHHHhhCCCChhHHHHHHHHHHHh
Confidence              2234678899999999999988888889998887653

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.84  E-value=4.7e-20  Score=145.15  Aligned_cols=127  Identities=16%  Similarity=0.190  Sum_probs=83.2

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~--~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~  114 (196)
                      .++.+|++++++.+           +++|||++++.  .+.|.||||++++||++.+||+||++||||+.+..... ++.
T Consensus        24 ~~~v~v~~~v~~~~-----------~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l-~~~   91 (199)
T 3h95_A           24 SHQVGVAGAVFDES-----------TRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSV-LSI   91 (199)
T ss_dssp             --CCEEEEEEEETT-----------TTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEE-EEE
T ss_pred             cccceEEEEEEeCC-----------CCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceE-EEE
Confidence            55677888888753           34899999876  48899999999999999999999999999999887666 553


Q ss_pred             EE-eeeCCCCceEEEEEEEEeecc--ccccCCcCccceeEEEeHHHHHhhccchhH-HHHHHHHHH
Q 029277          115 WN-FKSRAHNTDYQGYMFPLLVQD--QLAEWPEKNVRSRKWMSVAEARKVCQHWWM-KEALDRLVM  176 (196)
Q Consensus       115 ~~-~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~~~~~-~~~l~~~~~  176 (196)
                      .. +..+. .......+|.+....  ......++|..+++|++++++.++.....+ +.++..+..
T Consensus        92 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~~  156 (199)
T 3h95_A           92 RQQHTNPG-AFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENTTPITSRVARLLLY  156 (199)
T ss_dssp             EECC----------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCSSBCHHHHHHHHHHHH
T ss_pred             EeeecCCC-CceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhhhcChHHHHHHHHHHh
Confidence            22 22221 112223344444332  222334567899999999999987554433 333433333

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.83  E-value=3.7e-20  Score=140.00  Aligned_cols=111  Identities=18%  Similarity=0.091  Sum_probs=84.0

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecce-eeeeEEeeeCCCCceEEEEEEEEeeccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE-LLGEWNFKSRAHNTDYQGYMFPLLVQDQ  138 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~~~~~  138 (196)
                      +|||++|...    |.|.||||+++.||++.+||+||++||||+.+....+ .++.+.+..  .......++|.+.....
T Consensus        42 ~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  119 (158)
T 3hhj_A           42 RVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGY--ETFHLLMPLYFCSHYKG  119 (158)
T ss_dssp             EEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEEC--SSCEEEEEEEEESCCBS
T ss_pred             EEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeecc--CCcEEEEEEEEEEECCC
Confidence            7999998753    6899999999999999999999999999999877653 133333333  23345566777665443


Q ss_pred             cccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHH
Q 029277          139 LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  178 (196)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l  178 (196)
                      .  ....|..+++|++++++.++...+.++.+++.+.+++
T Consensus       120 ~--~~~~e~~~~~W~~~~el~~~~~~~~~~~il~~~~~~l  157 (158)
T 3hhj_A          120 V--AQGREGQNLKWIFINDLDKYPMPEADKPLVQVLKNFF  157 (158)
T ss_dssp             C--CCCTTSCEEEEEEGGGGGGSCCCTTTHHHHHHHHHC-
T ss_pred             c--cCCccccceEEEcHHHHhhCCCCcchHHHHHHHHHhc
Confidence            2  2345678999999999999988888899988876643

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.83  E-value=3.5e-20  Score=137.53  Aligned_cols=125  Identities=18%  Similarity=0.079  Sum_probs=90.9

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecce-eee
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE-LLG  113 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~-~l~  113 (196)
                      +.++++++++.+            ++|||++|...    |.|.||||+++.||++.+||.||++||||+.+..... .++
T Consensus         8 ~~~~~~vi~~~~------------~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~   75 (144)
T 3r03_A            8 LLVTAAALIDPD------------GRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLA   75 (144)
T ss_dssp             EEEEEEEEBCTT------------SCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEE
T ss_pred             eEEEEEEEEcCC------------CEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEE
Confidence            445556666542            27999998754    7899999999999999999999999999999887653 133


Q ss_pred             eEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHh
Q 029277          114 EWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT  179 (196)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~  179 (196)
                      .+.+..  .......++|.+......  ....|..+++|++++++.++...+.++.+++.+.+...
T Consensus        76 ~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~  137 (144)
T 3r03_A           76 FASHSY--DTFHLLMPLYACRSWRGR--ATAREGQTLAWVRAERLREYPMPPADLPLIPILQDWLE  137 (144)
T ss_dssp             EEEEEC--SSSEEEEEEEEECCCBSC--CCCCSSCEEEEECGGGGGGSCCCTTTTTHHHHHHHHC-
T ss_pred             eeeccC--CCeEEEEEEEEEEecCCc--cCCCCcceEEEEeHHHhccCCCCcchHHHHHHHhCccc
Confidence            333332  334455667777655432  22456789999999999999888888888877665543

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.83  E-value=3.2e-19  Score=137.52  Aligned_cols=128  Identities=22%  Similarity=0.233  Sum_probs=89.8

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-----CCCEEe-cCcccCCCCCHHHHHHHHHHHhhceeeeeccee
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-----~~~W~l-PgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~  111 (196)
                      .+.++++++++.+            ++|||.+|..     .|.|.| |||+++.||++.+||+||++||||+.+..... 
T Consensus        36 ~~~~~~v~i~~~~------------~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-  102 (180)
T 2fkb_A           36 RHRATYIVVHDGM------------GKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAE-  102 (180)
T ss_dssp             CEEEEEEEEECSS------------SCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEE-
T ss_pred             eeeEEEEEEECCC------------CEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEE-
Confidence            3456666666542            2699888754     257999 99999999999999999999999998776665 


Q ss_pred             eeeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhc--cchhHHHHHHHHHHHHhcc
Q 029277          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVC--QHWWMKEALDRLVMRLTSQ  181 (196)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~--~~~~~~~~l~~~~~~l~~~  181 (196)
                      ++.+.+...  ......++|.+... ........|+.+++|++++++.+++  ..+..+.++..++......
T Consensus       103 l~~~~~~~~--~~~~~~~~f~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~~~~~~~~  171 (180)
T 2fkb_A          103 HGQFYFEDK--NCRVWGALFSCVSH-GPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKRNAKN  171 (180)
T ss_dssp             EEEEEEEET--TEEEEEEEEEEECC-CCCCCCTTTEEEEEEECHHHHHTTGGGBCHHHHHHHHHHHHHC---
T ss_pred             EEEEEecCC--CceEEEEEEEEecC-CCcCCChhHhheEEEecHHHHHHHHHHhCCcHHHHHHHHHHhhcCC
Confidence            666655433  23445566766632 2222345678999999999999984  3567777777776655444

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.83  E-value=1.2e-19  Score=138.05  Aligned_cols=109  Identities=17%  Similarity=0.037  Sum_probs=76.4

Q ss_pred             EEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeE------EeeeCCCCc---eEEEE
Q 029277           64 EVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW------NFKSRAHNT---DYQGY  129 (196)
Q Consensus        64 ~vLLv~~~~~-----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~------~~~~~~~~~---~~~~~  129 (196)
                      +|||++|...     |.|.||||+++.||++.+||+||++||||+.+..... ++..      .+.++....   ....+
T Consensus        40 ~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (165)
T 3oga_A           40 CYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDI-TPWTFRDDIRIKTYADGRQEEIYMIYL  118 (165)
T ss_dssp             EEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEE-EEEEEEEEEEEEEC--CCEEEEEEEEE
T ss_pred             EEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccce-eeeeeecceeeEecCCCCceeEEEEEE
Confidence            7999988743     6799999999999999999999999999999876554 3311      122222221   11233


Q ss_pred             EEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHH
Q 029277          130 MFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL  174 (196)
Q Consensus       130 ~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~  174 (196)
                      +|.+........ +.+|..+++|++++++.++...+..+.+++.+
T Consensus       119 ~~~~~~~~~~~~-~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~  162 (165)
T 3oga_A          119 IFDCVSANRDIC-INDEFQDYAWVKPEELALYDLNVATRHTLALK  162 (165)
T ss_dssp             EEEEEESCCCCC-CCTTEEEEEEECGGGGGGSCBCHHHHHHHHHT
T ss_pred             EEEeeccCCCcc-CCchheeeEEccHHHHhhCCCCHHHHHHHHHh
Confidence            444444433222 34577899999999999998888888887653

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.82  E-value=4.2e-20  Score=138.98  Aligned_cols=113  Identities=12%  Similarity=0.099  Sum_probs=83.1

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN  116 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~  116 (196)
                      .++.++++++++.+             +|||+++  .+.|.||||++++||++.+||+||++||||+.+..... ++.+.
T Consensus        17 ~~~~~~~~ii~~~~-------------~vLl~~r--~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~   80 (154)
T 2pqv_A           17 VFGVRATALIVQNH-------------KLLVTKD--KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQL-AFVVE   80 (154)
T ss_dssp             EEEEEEEECCEETT-------------EEEEEEE--TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEE-EEEEE
T ss_pred             eEeEEEEEEEEECC-------------EEEEEec--CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceE-EEEEe
Confidence            45677888887632             7999998  68899999999999999999999999999999887766 66655


Q ss_pred             eeeCCCCc--eEEEEEEEEeecccccc--CCcCccceeEEEeHHHHHhhccch
Q 029277          117 FKSRAHNT--DYQGYMFPLLVQDQLAE--WPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       117 ~~~~~~~~--~~~~~~f~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      +.......  +...++|.+........  .+++|..+++|++++++.++...+
T Consensus        81 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~  133 (154)
T 2pqv_A           81 NRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVP  133 (154)
T ss_dssp             EEEEETTEEEEEEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGSCEES
T ss_pred             eeecCCCCcceEEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhcCcCc
Confidence            43332222  33455677766543221  234457899999999999875444

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.82  E-value=2.7e-19  Score=133.82  Aligned_cols=112  Identities=20%  Similarity=0.146  Sum_probs=73.5

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~  114 (196)
                      +.+|++++++.+            +++||+++++.    +.|+||||++|+|||+++||+||++||||+.+..... ++.
T Consensus         5 ~~~v~vi~~~~~------------~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-l~~   71 (145)
T 2w4e_A            5 PRAVFILPVTAQ------------GEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVP-LPG   71 (145)
T ss_dssp             CEEEEEEEEETT------------SEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEE-CCC
T ss_pred             CCEEEEEEEcCC------------CEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEE-Eec
Confidence            357777777643            27988875432    3799999999999999999999999999999876655 554


Q ss_pred             EEeeeCCCCceEEEEEEEEee-ccccccCCcCccceeEEEeHHHHHhhccch
Q 029277          115 WNFKSRAHNTDYQGYMFPLLV-QDQLAEWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      + +..+. ......++|.+.. ........++|..+++|++++++.+++..+
T Consensus        72 ~-~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  121 (145)
T 2w4e_A           72 F-YPQPS-ISGVVFYPLLALGVTLGAAQLEDTETIERVVLPLAEVYRMLEAG  121 (145)
T ss_dssp             B-BSCTT-TCCCEEEEEEEEEEEEC--------CEEEEEEEHHHHHHHHHHT
T ss_pred             C-cCCCC-ccCceEEEEEEEecccCCCCCCCCCeEEEEEEeHHHHHHHHHcC
Confidence            3 22221 1223345555542 222222345677999999999999886543

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.82  E-value=2.8e-19  Score=136.75  Aligned_cols=129  Identities=19%  Similarity=0.194  Sum_probs=89.2

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN  116 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~  116 (196)
                      .+|.+|++++++.+            ++|||+++...+.|.+|||+++.||++.+||.||++||||+.+..... ++.+.
T Consensus         6 ~~~~~v~~~i~~~~------------~~vLl~~r~~~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~-~~~~~   72 (164)
T 2kdv_A            6 GYRPNVGIVICNRQ------------GQVMWARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRI-LASTR   72 (164)
T ss_dssp             SEEEEEEEEEECTT------------SEEEEEEETTCCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEE-EEECS
T ss_pred             CCCcEEEEEEEccC------------CEEEEEEEcCCCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEE-EEEec
Confidence            56888999988753            279999988778999999999999999999999999999999876655 55432


Q ss_pred             ----eeeCCC---------CceEEEEEEEEeecccccc-----CCcCccceeEEEeHHHHHhhcc---chhHHHHHHHHH
Q 029277          117 ----FKSRAH---------NTDYQGYMFPLLVQDQLAE-----WPEKNVRSRKWMSVAEARKVCQ---HWWMKEALDRLV  175 (196)
Q Consensus       117 ----~~~~~~---------~~~~~~~~f~~~~~~~~~~-----~~~~e~~~~~W~~~~el~~~~~---~~~~~~~l~~~~  175 (196)
                          |..+..         ......++|.+........     .+..|+.+++|++++++.+.+.   .+.++.++..+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~l~~~~~~~~~~~l~~l~  152 (164)
T 2kdv_A           73 NWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFA  152 (164)
T ss_dssp             SCEEEECCTTTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHHH
T ss_pred             ceeEEecCcceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhhhhhhhHHHHHHHHHHHH
Confidence                332221         1123456777775543211     1235789999999999866533   233444444444


Q ss_pred             HHH
Q 029277          176 MRL  178 (196)
Q Consensus       176 ~~l  178 (196)
                      ..+
T Consensus       153 ~~l  155 (164)
T 2kdv_A          153 SVV  155 (164)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.81  E-value=2.6e-19  Score=134.60  Aligned_cols=127  Identities=16%  Similarity=0.163  Sum_probs=89.8

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~--~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~  114 (196)
                      ..+.++++++++.+   .      ++..+||++|...  ..|.||||++++||++.+||+||++||||+.+..... ++.
T Consensus         6 ~~~~~~~~ii~~~~---~------~~~~vLl~~r~~~~~~gw~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~   75 (155)
T 2b06_A            6 LTILTNICLIEDLE---T------QRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQL-VGI   75 (155)
T ss_dssp             CEEEEEEEEEEETT---T------TEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEE-EEE
T ss_pred             CcEEEEEEEEEECC---C------CeEEEEEEECCCCCCCCEeccceecCCCCCHHHHHHHHHHHHhCccccCCcE-EEE
Confidence            35677888887742   1      2233777776543  2389999999999999999999999999999988776 776


Q ss_pred             EEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHH
Q 029277          115 WNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  176 (196)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  176 (196)
                      +.+... .......++|.+.......  ...|..+++|++++++.++...+.++.+++.+..
T Consensus        76 ~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  134 (155)
T 2b06_A           76 KNWPLD-TGGRYIVICYKATEFSGTL--QSSEEGEVSWVQKDQIPNLNLAYDMLPLMEMMEA  134 (155)
T ss_dssp             EEEECT-TSCEEEEEEEEECEEEECC--CCBTTBEEEEEEGGGGGGSCBCTTHHHHHHHHHC
T ss_pred             EeeccC-CCceEEEEEEEEEecCCCC--CCCcceeeEEeeHHHhhhCCCChhHHHHHHHHhC
Confidence            665543 2344556677665543321  2356789999999999999888888887765553

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.81  E-value=9.9e-20  Score=135.64  Aligned_cols=110  Identities=15%  Similarity=0.204  Sum_probs=75.2

Q ss_pred             EEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeC
Q 029277           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSR  120 (196)
Q Consensus        41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~  120 (196)
                      ++++++++.+           .++|||+++...|.|.||||++++|||+.+||+||++||||+.+..... +..+.....
T Consensus         6 ~~~~~i~~~~-----------~~~vLl~~r~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~   73 (146)
T 2jvb_A            6 VRGAAIFNEN-----------LSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYID-DNQFIERNI   73 (146)
T ss_dssp             CEEEEEBCTT-----------SSEEEEECCSSSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSC-SSCEEEEEE
T ss_pred             EEEEEEEeCC-----------CCEEEEEEEcCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhcc-ccccccccc
Confidence            4667777642           2489999987778999999999999999999999999999999875433 333322211


Q ss_pred             CCCceEEEEEEEEee-ccc--cccCCcCccceeEEEeHHHHHhhccch
Q 029277          121 AHNTDYQGYMFPLLV-QDQ--LAEWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       121 ~~~~~~~~~~f~~~~-~~~--~~~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      . +.  ..++|.+.. ...  ....+++|+.+++|++++++.+++...
T Consensus        74 ~-~~--~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  118 (146)
T 2jvb_A           74 Q-GK--NYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKS  118 (146)
T ss_dssp             T-TE--EEEEEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCS
T ss_pred             C-Cc--eEEEEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhccc
Confidence            1 11  223333322 211  112235678999999999999886554

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.81  E-value=1.1e-19  Score=137.56  Aligned_cols=130  Identities=17%  Similarity=0.209  Sum_probs=85.9

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee-
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE-  114 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~-  114 (196)
                      .+|.++++++++.+            ++|||++|.. .|.|.+|||+++.||++++||+||++||||+.+......... 
T Consensus        12 ~~~~~v~~~i~~~~------------~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~   79 (165)
T 1f3y_A           12 GYRRNVGICLMNND------------KKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYW   79 (165)
T ss_dssp             SCCCEEEEEEECTT------------SCEEEEEETTEEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSC
T ss_pred             ceeeeEEEEEECCC------------CcEEEEecCCCCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccc
Confidence            56788888888643            2799999875 378999999999999999999999999999986432110100 


Q ss_pred             EEeeeCCC------------CceEEEEEEEEeecccc--ccC-----CcCccceeEEEeHHHHHhhccchhHHHHHHHHH
Q 029277          115 WNFKSRAH------------NTDYQGYMFPLLVQDQL--AEW-----PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  175 (196)
Q Consensus       115 ~~~~~~~~------------~~~~~~~~f~~~~~~~~--~~~-----~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~  175 (196)
                      +.+..+..            ......++|.+......  ...     +..|..+++|++++++.+++... ....++.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~-~~~~~~~~~  158 (165)
T 1f3y_A           80 LTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEF-KKPVYKEVL  158 (165)
T ss_dssp             CBCCCCHHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGG-GHHHHHHHH
T ss_pred             eeeecCccccccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhhh-hHHHHHHHH
Confidence            11111100            00113445666554321  111     34578999999999999987542 455666666


Q ss_pred             HHHh
Q 029277          176 MRLT  179 (196)
Q Consensus       176 ~~l~  179 (196)
                      ..+.
T Consensus       159 ~~l~  162 (165)
T 1f3y_A          159 SVFA  162 (165)
T ss_dssp             HHHG
T ss_pred             HHhh
Confidence            6554

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.81  E-value=2.1e-19  Score=137.66  Aligned_cols=107  Identities=19%  Similarity=0.111  Sum_probs=77.3

Q ss_pred             EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccccccCC
Q 029277           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP  143 (196)
Q Consensus        64 ~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  143 (196)
                      ++||++++ .|.|.||||++++||++.+||+||++||||+.+..... ++.+.+  +.    ...++|.+.... . ..+
T Consensus        28 ~vLL~~r~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~~~--~~----~~~~~f~~~~~~-~-~~~   97 (163)
T 3f13_A           28 GVLVTASR-GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLY-LFDHIT--PF----NAHKVYLCIAQG-Q-PKP   97 (163)
T ss_dssp             EEEEEECC----BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEE-EEEEEC--SS----EEEEEEEEEC-C-C-CCC
T ss_pred             EEEEEEEC-CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEE-EEEEec--CC----eEEEEEEEEECC-c-Ccc
Confidence            69999876 58899999999999999999999999999999888776 665543  21    345566665432 2 223


Q ss_pred             cCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhcc
Q 029277          144 EKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ  181 (196)
Q Consensus       144 ~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~  181 (196)
                      .+|+.+++|++ .+.......+..+.++..+.......
T Consensus        98 ~~E~~~~~W~~-~~~~~~~l~~~~~~il~~~~~~~~~~  134 (163)
T 3f13_A           98 QNEIERIALVS-SPDTDMDLFVEGRAILRRYARLRNEE  134 (163)
T ss_dssp             CTTCCEEEEES-STTCSSCBCHHHHHHHHHHHHHTTCS
T ss_pred             CCCceEEEEEC-cccccCCCCHHHHHHHHHHHHhhhcc
Confidence            44789999999 45555556678888888877765443

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.80  E-value=5.4e-19  Score=137.81  Aligned_cols=128  Identities=14%  Similarity=0.097  Sum_probs=89.3

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-----CCCEEe-cCcccCCCCCHHHHHHHHHHHhhceeeeec-ce
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVE-CE  110 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-----~~~W~l-PgG~ve~gEs~~~Aa~REl~EEtGl~~~~~-~~  110 (196)
                      .+.++++++++.+            +++||++|..     .|.|.+ |||+++.||++++||+||++||||+.+... ..
T Consensus        31 ~~~~v~~~i~~~~------------g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~   98 (190)
T 1hzt_A           31 LHLAFSSWLFNAK------------GQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESI   98 (190)
T ss_dssp             CEECEEEEEECTT------------CCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEE
T ss_pred             eEEEEEEEEEcCC------------CEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhhee
Confidence            3456777777642            2799998854     378999 999999999999999999999999998776 54


Q ss_pred             eeeeEEeeeCCC--C-ceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhc------cchhHHHHHHHHHHHHh
Q 029277          111 LLGEWNFKSRAH--N-TDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVC------QHWWMKEALDRLVMRLT  179 (196)
Q Consensus       111 ~l~~~~~~~~~~--~-~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~------~~~~~~~~l~~~~~~l~  179 (196)
                       ++.+.+.....  . .....++|.+..... .....+|..+++|++++++.+++      ..+.++.+++.+.++.+
T Consensus        99 -~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~p~~~~~~~~~~~~~~  174 (190)
T 1hzt_A           99 -YPDFRYRATDPSGIVENEVCPVFAARTTSA-LQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREARKR  174 (190)
T ss_dssp             -ETTCEEEEECTTSCEEEEECCEEEEEBCSC-CCCCTTTEEEEEEECHHHHHHHHHHCGGGBCHHHHHHHHSHHHHHH
T ss_pred             -eeeEEEEeeCCCCCcceEEEEEEEEecCCC-CcCCccceeeEEEecHHHHHHHHHcChhhcCchHHHHHHHHHHHHh
Confidence             65555433221  1 234456676665432 22235678999999999998874      34555666666555443

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.79  E-value=4e-19  Score=149.84  Aligned_cols=127  Identities=15%  Similarity=0.098  Sum_probs=86.4

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~  113 (196)
                      ..+.+|++++++.+             +|||+++.+   .|.|.+|||++|+||++++||+||++||||+.+..... ++
T Consensus       201 ~~~~~v~~vi~~~~-------------~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~  266 (341)
T 2qjo_A          201 PTFITTDAVVVQAG-------------HVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVL-RG  266 (341)
T ss_dssp             CCEEEEEEEEEETT-------------EEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHH-HH
T ss_pred             CCceEEEEEEEeCC-------------EEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccc-cc
Confidence            44678888888532             799999875   47899999999999999999999999999999876544 32


Q ss_pred             ----eEEeeeCCC--CceEEEEEEEEeeccccc-c-CCcCccceeEEEeHHHHHhh--ccchhHHHHHHHHHHH
Q 029277          114 ----EWNFKSRAH--NTDYQGYMFPLLVQDQLA-E-WPEKNVRSRKWMSVAEARKV--CQHWWMKEALDRLVMR  177 (196)
Q Consensus       114 ----~~~~~~~~~--~~~~~~~~f~~~~~~~~~-~-~~~~e~~~~~W~~~~el~~~--~~~~~~~~~l~~~~~~  177 (196)
                          ...+..+..  ......++|.+....... . .+++|..+++|++++++.++  ...+.++.++..++..
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~il~~~~~~  340 (341)
T 2qjo_A          267 SIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYEDHFQIIQHFVSK  340 (341)
T ss_dssp             TEEEEEEECCTTSCTTSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHTGGGBCTTHHHHHHHHC--
T ss_pred             cccceEEEeCCCCCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhhhhhhhchHHHHHHHHHHhc
Confidence                223332222  223445566666543321 1 24467799999999999987  6677788888776543

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.79  E-value=4.5e-19  Score=146.42  Aligned_cols=137  Identities=18%  Similarity=0.201  Sum_probs=95.2

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecce-ee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE-LL  112 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~-~l  112 (196)
                      .++++|+++|+..+..+       ++.+|||+++...   |.|.||||++++||++++||+||++||||+.+..... .+
T Consensus        37 ~p~v~v~~vv~~~~~~~-------~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l  109 (273)
T 2fml_A           37 KPSLTVDMVLLCYNKEA-------DQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQL  109 (273)
T ss_dssp             CCEEEEEEEEEEEETTT-------TEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred             CCceEEEEEEEEEcCCC-------CCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEE
Confidence            56789999999875110       1568999998763   7899999999999999999999999999987665332 13


Q ss_pred             eeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhc-----------------------cchhHHH
Q 029277          113 GEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVC-----------------------QHWWMKE  169 (196)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~-----------------------~~~~~~~  169 (196)
                      +.+.....+...+...++|.+...... ..+.+|..++.|++++++.+.+                       ....+..
T Consensus       110 ~~~~~~~r~~~~~~~~~~y~a~~~~~~-~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~LafdH~~  188 (273)
T 2fml_A          110 HSFSRPDRDPRGWVVTVSYLAFIGEEP-LIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFDHSE  188 (273)
T ss_dssp             EEECCTTSSTTSSEEEEEEEEECCCCC-CCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTTHHH
T ss_pred             EEEcCCCCCCCceEEEEEEEEEeCCCC-CCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCcccccHHH
Confidence            433322222223456667777665433 3455678999999999864432                       1234567


Q ss_pred             HHHHHHHHHhcc
Q 029277          170 ALDRLVMRLTSQ  181 (196)
Q Consensus       170 ~l~~~~~~l~~~  181 (196)
                      ++..++.+++.+
T Consensus       189 Il~~al~rlr~k  200 (273)
T 2fml_A          189 IIIKAFNRVVDK  200 (273)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888777654

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.78  E-value=1.2e-18  Score=143.67  Aligned_cols=113  Identities=12%  Similarity=0.079  Sum_probs=86.7

Q ss_pred             EEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccccc
Q 029277           64 EVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE  141 (196)
Q Consensus        64 ~vLLv~~~~--~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  141 (196)
                      +|||+++.+  .|.|.||||++|+|||+++||+||++||||+.+..... ++.+.+.++    ....++|.+........
T Consensus       152 ~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~-~~~~~~~~~----~~~~~~f~a~~~~~~~~  226 (269)
T 1vk6_A          152 SILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRY-VTSQPWPFP----QSLMTAFMAEYDSGDIV  226 (269)
T ss_dssp             EEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEE-EEEEEEETT----EEEEEEEEEEEEECCCC
T ss_pred             EEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEE-EEEEecCCC----CEEEEEEEEEECCCCcC
Confidence            899999875  37899999999999999999999999999999988777 776655433    23556777766543333


Q ss_pred             CCcCccceeEEEeHHHHHhhccchhH-HHHHHHHHHHHhcc
Q 029277          142 WPEKNVRSRKWMSVAEARKVCQHWWM-KEALDRLVMRLTSQ  181 (196)
Q Consensus       142 ~~~~e~~~~~W~~~~el~~~~~~~~~-~~~l~~~~~~l~~~  181 (196)
                      ...+|..+++|++++++..+.....+ +.+++.++..++++
T Consensus       227 ~~~~E~~~~~W~~~~el~~l~~~~si~~~li~~~l~~~r~~  267 (269)
T 1vk6_A          227 IDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAE  267 (269)
T ss_dssp             CCTTTEEEEEEEETTSCCSCCCTTSHHHHHHHHHHHHHHHC
T ss_pred             CCCcceEEEEEEEHHHhhhcccCcHHHHHHHHHHHHHHHhh
Confidence            33467899999999999887655443 67777777776643

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.78  E-value=6.3e-19  Score=136.36  Aligned_cols=115  Identities=17%  Similarity=0.059  Sum_probs=81.2

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC----CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELL  112 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~----~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l  112 (196)
                      ..+.+|++++++.+            +++||+++.+    .+.|.||||++++||++.+||+||++||||+.+..... +
T Consensus        39 ~~~~~v~v~i~~~~------------~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l  105 (182)
T 2yvp_A           39 GPVAASFVLPVTER------------GTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIP-L  105 (182)
T ss_dssp             SSCEEEEEEEBCTT------------SEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEE-C
T ss_pred             ecCCEEEEEEEcCC------------CEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEE-E
Confidence            44457777777642            2799998764    36799999999999999999999999999999876665 5


Q ss_pred             eeEEeeeCCCCceEEEEEEEEeecc--ccccCCcCccceeEEEeHHHHHhhccchh
Q 029277          113 GEWNFKSRAHNTDYQGYMFPLLVQD--QLAEWPEKNVRSRKWMSVAEARKVCQHWW  166 (196)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~~~~  166 (196)
                      +.+.. .. .......++|.+....  ........|..++.|++++++.+++..+.
T Consensus       106 ~~~~~-~~-~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~  159 (182)
T 2yvp_A          106 PSFHP-QP-SFTAVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKGE  159 (182)
T ss_dssp             CCBCS-CT-TTBCCEEEEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHTTC
T ss_pred             EEEeC-CC-CccccEEEEEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHcCC
Confidence            55422 11 2223345566665322  22223456789999999999998875553

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.78  E-value=1.7e-18  Score=146.84  Aligned_cols=129  Identities=16%  Similarity=0.133  Sum_probs=92.6

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecce---
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE---  110 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~---  110 (196)
                      ..+.+|++++++.+             +|||+++.+.   |.|.||||++|+|||+++||+||++||||+.+.....   
T Consensus       206 ~~~~~v~~vv~~~~-------------~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~  272 (352)
T 2qjt_B          206 PNFVTVDALVIVND-------------HILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIA  272 (352)
T ss_dssp             CEEEEEEEEEEETT-------------EEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             CCceEEEEEEEECC-------------EEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcce
Confidence            34567777777431             7999998763   7899999999999999999999999999999875432   


Q ss_pred             eeeeEEeeeCCC--CceEEEEEEEEeecccc--cc-CCcCccceeEEEeH-HHHHhh--ccchhHHHHHHHHHHHH
Q 029277          111 LLGEWNFKSRAH--NTDYQGYMFPLLVQDQL--AE-WPEKNVRSRKWMSV-AEARKV--CQHWWMKEALDRLVMRL  178 (196)
Q Consensus       111 ~l~~~~~~~~~~--~~~~~~~~f~~~~~~~~--~~-~~~~e~~~~~W~~~-~el~~~--~~~~~~~~~l~~~~~~l  178 (196)
                      ......+..+..  ......+.|.+......  .. .+.+|..+++|+++ +++.++  ...+.++.+++.+++++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~~~~il~~~~~~l  348 (352)
T 2qjt_B          273 KRCEKVFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLEDHYQIITILLEEC  348 (352)
T ss_dssp             EEEEEEECCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHHHHHHHT
T ss_pred             eeeeEEecCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChhHHHHHHHHHHHh
Confidence            012222333322  22344556666554332  21 23567899999999 999986  66788899999998877

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.77  E-value=9.9e-19  Score=136.64  Aligned_cols=114  Identities=18%  Similarity=0.117  Sum_probs=82.2

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-----CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeeccee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-----~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~  111 (196)
                      ..+.++++++++.+          ++.+|||++|.+     .|.|.||||+++.||++.+||+||++||||+.+..... 
T Consensus        32 ~~~~~~~~v~i~~~----------~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-  100 (194)
T 1nqz_A           32 HYRRAAVLVALTRE----------ADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTL-  100 (194)
T ss_dssp             -CEEEEEEEEEESS----------SSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEE-
T ss_pred             CCceEEEEEEEecC----------CCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEE-
Confidence            45677777777532          334799999864     37899999999999999999999999999999887666 


Q ss_pred             eeeEEeeeCCCCceEEEEEEEEeecccc--ccCCcCccceeEEEeHHHH-Hhhcc
Q 029277          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWMSVAEA-RKVCQ  163 (196)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~el-~~~~~  163 (196)
                      ++.+.+.....  ....++|.+......  .....+|+.++.|++++++ .+...
T Consensus       101 l~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~  153 (194)
T 1nqz_A          101 LGELDDVFTPV--GFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPLV  153 (194)
T ss_dssp             EEECCCEEETT--TEEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHSCCE
T ss_pred             EEEccCccCCC--CeEEEEEEEEecCCccccCCCccceeEEEEEEHHHhccCCCc
Confidence            66654433322  244566776665322  2334567899999999999 76543

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.77  E-value=2e-18  Score=132.05  Aligned_cols=125  Identities=13%  Similarity=0.084  Sum_probs=84.1

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-----CCCEE-ecCcccCCCCCHHHHHHHHHHHhhceeeeecce-e
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECE-L  111 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-----~~~W~-lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~-~  111 (196)
                      +.++++++++.+            +++||++|..     .|.|. ||||++++||++.+||+||++||||+.+..... +
T Consensus        34 ~~~v~v~i~~~~------------~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~  101 (171)
T 1q27_A           34 VRVVNAFLRNSQ------------GQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRP  101 (171)
T ss_dssp             CEEEEEEEEETT------------TEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEE
T ss_pred             ceEEEEEEECCC------------CeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEE
Confidence            556777777643            2799988744     37798 999999999999999999999999999876432 1


Q ss_pred             eeeEE-eeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhcc--chhHHHHHHHHHHHHh
Q 029277          112 LGEWN-FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQ--HWWMKEALDRLVMRLT  179 (196)
Q Consensus       112 l~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~--~~~~~~~l~~~~~~l~  179 (196)
                      ++.+. +...  ... ..++|.+.. .........|..+++|++++++.++..  ......++..+...+.
T Consensus       102 ~~~~~~~~~~--~~~-~~~~f~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~l~~~~~  168 (171)
T 1q27_A          102 LASFSPFQTT--LSS-FMCVYELRS-DATPIFNPNDISGGEWLTPEHLLARIAAGEAAKGDLAELVRRCYR  168 (171)
T ss_dssp             EEEECSSSSC--CSS-EEEEEEEEC-CCCCCSCTTTCSCCEEECHHHHHHHHHHHSSCCHHHHHHHHHHHT
T ss_pred             EEEEeccCCC--Ccc-EEEEEEEEE-CCccccCchhhheEEEecHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence            44433 2222  122 556777665 222222346778999999999986532  2234555655555443

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.77  E-value=1.3e-19  Score=131.79  Aligned_cols=106  Identities=17%  Similarity=0.210  Sum_probs=80.4

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (196)
                      +|||++|.+.    |.|.||||++++||++.+||.||++||||+.+..... ++.+.+..+  ......++|.+......
T Consensus        17 ~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~   93 (129)
T 1mut_A           17 EIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSL-FEKLEYEFP--DRHITLWFWLVERWEGE   93 (129)
T ss_dssp             EEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECC-CCCCBCCCS--SCEEECCCEEEEECSSC
T ss_pred             EEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceE-EEEEEEecC--CceEEEEEEEEEccCCc
Confidence            8999998764    7899999999999999999999999999999877666 665544333  22334456666654332


Q ss_pred             ccCCcCccceeEEEeHHHHHhhccchhHHHHHHHH
Q 029277          140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL  174 (196)
Q Consensus       140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~  174 (196)
                      .  ...|..++.|++++++.++...+.++.+++.+
T Consensus        94 ~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~l  126 (129)
T 1mut_A           94 P--WGKEGQPGEWMSLVGLNADDFPPANEPVIAKL  126 (129)
T ss_dssp             C--CCCSSCCCEEEESSSCCTTTSCTTCHHHHHHH
T ss_pred             c--CCcccceeEEeCHHHcccccCCchhHHHHHHH
Confidence            2  23467889999999999988777777777654

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.77  E-value=2.4e-18  Score=136.95  Aligned_cols=111  Identities=17%  Similarity=0.021  Sum_probs=79.0

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-------CCEEe-cCcccCCCCC--H----HHHHHHHHHHhhc
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-------KGMLF-PKGGWEIDES--I----QEAALRETIEEAG  102 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-------~~W~l-PgG~ve~gEs--~----~~Aa~REl~EEtG  102 (196)
                      .++..+..+++..+            ++|||++|.++       +.|.+ |||++|+|||  +    ++||+||++||||
T Consensus        65 ~~~q~i~~~II~~~------------grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtG  132 (211)
T 3e57_A           65 TTKQVIPYVVIMDG------------DRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVD  132 (211)
T ss_dssp             TEEEEEEEEEEEET------------TEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEE
T ss_pred             cccceEEEEEEEEC------------CEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhC
Confidence            66776666666543            28999998643       47999 9999999999  4    9999999999999


Q ss_pred             eeeeecceeeeeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhc
Q 029277          103 VTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVC  162 (196)
Q Consensus       103 l~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~  162 (196)
                      +.+..... ++.+.+........+..++|.+......  ..+.+..+++|++++++.++.
T Consensus       133 l~v~~~~~-ig~~~~~~~~~~~~~l~~~f~~~~~~g~--~~~~E~~~~~W~~~~eL~~~~  189 (211)
T 3e57_A          133 VSLRELEF-LGLINSSTTEVSRVHLGALFLGRGKFFS--VKEKDLFEWELIKLEELEKFS  189 (211)
T ss_dssp             EEEEEEEE-EEEEECCSSHHHHTEEEEEEEEEEEEEE--ESCTTTCEEEEEEHHHHHHHG
T ss_pred             CeeeccEE-EEEEeccCCCCCeEEEEEEEEEEeCCce--eCCCCeEEEEEEEHHHHHHhH
Confidence            99888777 7777653221122344556777655332  234567899999999999883

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.76  E-value=3.9e-18  Score=130.57  Aligned_cols=113  Identities=24%  Similarity=0.158  Sum_probs=76.4

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC----CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~----~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~  113 (196)
                      .+.+|++++++ +          +  ++||+++.+    .+.|.||||++|+|||+.+||+||++||||+ +..... ++
T Consensus        33 ~~~~v~vii~~-~----------~--~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~-l~   97 (170)
T 1v8y_A           33 HKPAVAVIALR-E----------G--RMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTY-LF   97 (170)
T ss_dssp             ECCEEEEEEEE-T----------T--EEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEE-EE
T ss_pred             cCCeEEEEEEE-C----------C--EEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCcee-eE
Confidence            34577788887 3          1  799998754    2679999999999999999999999999999 777666 66


Q ss_pred             eEEeeeCCCCceEEEEEEEEeeccc-cccCCcCccceeEEEeHHHHHhhccchhH
Q 029277          114 EWNFKSRAHNTDYQGYMFPLLVQDQ-LAEWPEKNVRSRKWMSVAEARKVCQHWWM  167 (196)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~e~~~~~W~~~~el~~~~~~~~~  167 (196)
                      .+.. .. .......++|.+..... .....++|..+++|++++++.+++..+.+
T Consensus        98 ~~~~-~~-~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~  150 (170)
T 1v8y_A           98 SYFV-SP-GFTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRGEV  150 (170)
T ss_dssp             EEES-CT-TTBCCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHTTSC
T ss_pred             EEec-CC-CccccEEEEEEEEeccccCCCCCCCceEEEEEEEHHHHHHHHHCCCE
Confidence            5432 22 22233455666654332 22223457799999999999988654433

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.76  E-value=2e-18  Score=138.31  Aligned_cols=128  Identities=14%  Similarity=0.051  Sum_probs=79.4

Q ss_pred             cccccccccCCCceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC---------------------------------
Q 029277           26 RTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---------------------------------   72 (196)
Q Consensus        26 ~~g~~~~~~~~~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~---------------------------------   72 (196)
                      ..|....+.....+.+|++|+++..           +.++||+++.+                                 
T Consensus        23 ~~G~~~~~e~v~~~~aV~vl~~~~~-----------~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (218)
T 3q91_A           23 MNGAQKSWDFMKTHDSVTVLLFNSS-----------RRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPG   91 (218)
T ss_dssp             ------------CCCEEEEEEEEGG-----------GTEEEEEEEECHHHHHHHTC------------------------
T ss_pred             CCCCEEEEEEEEcCCeEEEEEEECC-----------CCEEEEEEcccccccccccccccccccccccccccccccccccc
Confidence            3344444333344567888888853           23799998643                                 


Q ss_pred             --CCCEEecCcccCC-CCCHHHHHHHHHHHhhceee--eecceeeeeEEeeeCCCCceEEEEEEEEeeccc------ccc
Q 029277           73 --GKGMLFPKGGWEI-DESIQEAALRETIEEAGVTG--IVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ------LAE  141 (196)
Q Consensus        73 --~~~W~lPgG~ve~-gEs~~~Aa~REl~EEtGl~~--~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~------~~~  141 (196)
                        .+.|+||||++|+ ||++++||+||++||||+.+  ..... ++.+..  .........++|.+.....      ...
T Consensus        92 ~~~~~welPgG~ve~~gEs~~eaA~REl~EEtGl~~~~~~l~~-l~~~~~--~~g~~~~~~~~f~a~~~~~~~~~~~~~~  168 (218)
T 3q91_A           92 SAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRR-VATYWS--GVGLTGSRQTMFYTEVTDAQRSGPGGGL  168 (218)
T ss_dssp             -CCEEEECEEEECCSSSCCHHHHHHHHHHHHHCBCCCGGGCEE-EEEEEE--C---CCEEEEEEEEEECGGGBCC-----
T ss_pred             CCCeEEECCcceeCCCCCCHHHHHHHHHHHHhCCccccCceEE-EEEEec--CCCccceEEEEEEEEECCcccccCCCCC
Confidence              3479999999999 99999999999999999998  44444 554322  2222234566777765431      112


Q ss_pred             CCcCccceeEEEeHHHHHhhccchhH
Q 029277          142 WPEKNVRSRKWMSVAEARKVCQHWWM  167 (196)
Q Consensus       142 ~~~~e~~~~~W~~~~el~~~~~~~~~  167 (196)
                      ..++|..++.|++++++.+++..+.+
T Consensus       169 ~d~~E~~ev~wv~l~el~~~i~~g~i  194 (218)
T 3q91_A          169 VEEGELIEVVHLPLEGAQAFADDPDI  194 (218)
T ss_dssp             ----CCEEEEEEEGGGHHHHHHCTTS
T ss_pred             CCCCcEEEEEEEEHHHHHHHHHcCCC
Confidence            23467899999999999999766544

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.76  E-value=1.2e-17  Score=125.87  Aligned_cols=125  Identities=18%  Similarity=0.205  Sum_probs=87.6

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC----CCEEecCcccCCCCCHH-HHHHHHHHHhhc-eeeeeccee
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWEIDESIQ-EAALRETIEEAG-VTGIVECEL  111 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~----~~W~lPgG~ve~gEs~~-~Aa~REl~EEtG-l~~~~~~~~  111 (196)
                      .|..+.+|+++..   +      .+++|||++|...    |.|+||||+++.||++. +||+||+.|||| +.+..... 
T Consensus        18 ~~~~~~~vi~~~~---~------~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~-   87 (155)
T 1x51_A           18 EESSATCVLEQPG---A------LGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRH-   87 (155)
T ss_dssp             EEEEEEEEEEEEC---S------SSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEE-
T ss_pred             eEEEEEEEEEecC---C------CCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeee-
Confidence            4556666666642   0      1348999988654    68999999999999996 999999999999 87655444 


Q ss_pred             eeeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHH
Q 029277          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  176 (196)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  176 (196)
                      ++.+.+.++  ......++|.+.......  ...+..++.|++++++.++.....++.++..+..
T Consensus        88 l~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  148 (155)
T 1x51_A           88 LGEVVHTFS--HIKLTYQVYGLALEGQTP--VTTVPPGARWLTQEEFHTAAVSTAMKKVFRVYQG  148 (155)
T ss_dssp             CCCBCCBCS--SCEEEEEEEEEECSSCCC--CCCCCTTEEEEEHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             cceEEEecC--CccEEEEEEEEEEcCCCC--CCCCCCccEEccHHHhhhcCCCHHHHHHHHHHHh
Confidence            554443333  223445567766543321  2235678999999999998877777887776654

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.76  E-value=6.6e-18  Score=133.06  Aligned_cols=101  Identities=18%  Similarity=0.026  Sum_probs=73.7

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (196)
                      +|||+++.+.    +.|+||||++|+||++++||+||++||||+.+..... ++.+... +. ......++|.+......
T Consensus        61 ~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~-l~~~~~~-~~-~~~~~~~~f~a~~~~~~  137 (198)
T 1vhz_A           61 HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTF-LKKLSMA-PS-YFSSKMNIVVAQDLYPE  137 (198)
T ss_dssp             EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEECC-TT-TCCCEEEEEEEEEEEEC
T ss_pred             EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEE-EEEEeCC-CC-ccCcEEEEEEEEeCCcc
Confidence            7999987543    3699999999999999999999999999999987776 6665432 21 22234456666543222


Q ss_pred             -ccCCcCccceeEEEeHHHHHhhccchhH
Q 029277          140 -AEWPEKNVRSRKWMSVAEARKVCQHWWM  167 (196)
Q Consensus       140 -~~~~~~e~~~~~W~~~~el~~~~~~~~~  167 (196)
                       ....+.|..++.|++++++.+++..+.+
T Consensus       138 ~~~~~~~E~~~~~w~~~~el~~~~~~~~i  166 (198)
T 1vhz_A          138 SLEGDEPEPLPQVRWPLAHMMDLLEDPDF  166 (198)
T ss_dssp             CCCCCCSSCCCEEEEEGGGGGGGGGCTTT
T ss_pred             cCCCCCCceEEEEEEEHHHHHHHHHcCCC
Confidence             2223456789999999999999876643

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.75  E-value=6.9e-18  Score=133.64  Aligned_cols=113  Identities=15%  Similarity=0.084  Sum_probs=75.8

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC----CCEEecCcccC-CCCCHHHHHHHHHHHhhceeeeecceeee
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWE-IDESIQEAALRETIEEAGVTGIVECELLG  113 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~----~~W~lPgG~ve-~gEs~~~Aa~REl~EEtGl~~~~~~~~l~  113 (196)
                      +.+|++++++.+            ++|||+++.+.    +.|.||||+++ .||++.+||+||++||||+.+..... ++
T Consensus        43 ~~av~v~i~~~~------------~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~-l~  109 (207)
T 1mk1_A           43 FGAVAIVAMDDN------------GNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQV-LV  109 (207)
T ss_dssp             CCEEEEEECCTT------------SEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEE-EE
T ss_pred             CCEEEEEEEcCC------------CEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEE-EE
Confidence            346666666632            37999987643    57999999999 99999999999999999999987766 66


Q ss_pred             eEEeeeCCCCceEEEEEEEEeecccccc---CCcCccceeEEEeHHHHHhhccchh
Q 029277          114 EWNFKSRAHNTDYQGYMFPLLVQDQLAE---WPEKNVRSRKWMSVAEARKVCQHWW  166 (196)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~e~~~~~W~~~~el~~~~~~~~  166 (196)
                      .+ +..+. ......++|.+........   ..+.|+.++.|++++++.+++..+.
T Consensus       110 ~~-~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~  163 (207)
T 1mk1_A          110 DL-DTAPG-FSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGE  163 (207)
T ss_dssp             EE-CSCTT-TBCCCEEEEEEEEEEECCC----------CEEEEEHHHHHHHHHTTS
T ss_pred             EE-EcCCC-ccccEEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHHHHcCC
Confidence            54 33322 2222345666554332221   2345678999999999999876553

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.75  E-value=4e-18  Score=133.48  Aligned_cols=114  Identities=16%  Similarity=0.032  Sum_probs=78.3

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcC----------CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeec
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK----------GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE  108 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~----------~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~  108 (196)
                      +.+|++++++.+           ++++||+++.+          .+.|+||||++| ||++.+||+||++||||+.+...
T Consensus        45 ~~av~v~~~~~~-----------~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~  112 (191)
T 3o6z_A           45 GNGATILLYNTK-----------KKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEV  112 (191)
T ss_dssp             CCEEEEEEEETT-----------TTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCE
T ss_pred             CCEEEEEEEECC-----------CCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcE
Confidence            346777777642           23899998763          357999999999 99999999999999999998766


Q ss_pred             ceeeeeEEeeeCCCCceEEEEEEEEeeccccc----cCCcCccceeEEEeHHHHHhhccchhH
Q 029277          109 CELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA----EWPEKNVRSRKWMSVAEARKVCQHWWM  167 (196)
Q Consensus       109 ~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~e~~~~~W~~~~el~~~~~~~~~  167 (196)
                      .. ++.+. ..+ .......++|.+.......    ...++|..++.|++++++.+++..+.+
T Consensus       113 ~~-l~~~~-~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~i  172 (191)
T 3o6z_A          113 RK-LFELY-MSP-GGVTELIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQALEMIKTGEI  172 (191)
T ss_dssp             EE-EEEEE-SCT-TTBCCEEEEEEEECCTTCC--------CCSSEEEEEEHHHHHHHHHHSSC
T ss_pred             EE-EEEEE-eCC-CccCcEEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHHHHHHcCCC
Confidence            65 66542 222 2223445667666543211    112567899999999999998765533

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.74  E-value=1.5e-17  Score=138.65  Aligned_cols=140  Identities=15%  Similarity=0.056  Sum_probs=93.2

Q ss_pred             CceEEEEEEEEEeeccCCcccccC-----CceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceee------
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINE-----EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTG------  105 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~-----~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~------  105 (196)
                      +++.++.+||.+.+...+|.++-+     ...+|||+++...|.|.||||++++||++.+||+||++||||+.+      
T Consensus       108 gp~~a~~~vv~~~~~~~~g~~~~~~~~g~~~l~vLl~~r~~~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~  187 (292)
T 1q33_A          108 GPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAE  187 (292)
T ss_dssp             EEEEEEEEEEEEECBCTTSCBCBCTTTCSBCEEEEEEECTTTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSH
T ss_pred             CccccceeeeeeecccccCceeeeccCCCCceEEEEEEecCCCcEeCCCcccCCCCCHHHHHHHHHHHHhCCcccccccc
Confidence            567788888887642223322221     235899999988899999999999999999999999999999983      


Q ss_pred             ------eecceee---ee--EEeeeCCC----CceEEEEEEEEeeccc-----cccCCcCccceeEEEeHHHHHhhccch
Q 029277          106 ------IVECELL---GE--WNFKSRAH----NTDYQGYMFPLLVQDQ-----LAEWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       106 ------~~~~~~l---~~--~~~~~~~~----~~~~~~~~f~~~~~~~-----~~~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                            ....+ +   +.  |.....+.    .......+|.+.....     ....+.+|+.+++|++++++..+  ..
T Consensus       188 ~~~l~~~l~~l-~~~~g~~vy~~~~~dpr~~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~L--~~  264 (292)
T 1q33_A          188 KREIEEKLHKL-FSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKL--YA  264 (292)
T ss_dssp             HHHHHHHHHHH-TTTSEEEEEEEECCCTTCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCC--ST
T ss_pred             chhhHHHHHHH-hhcccceeecccccCCCCCcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCccc--CH
Confidence                  12222 2   22  22111111    1134445555544321     12234567899999999999875  45


Q ss_pred             hHHHHHHHHHHHHh
Q 029277          166 WMKEALDRLVMRLT  179 (196)
Q Consensus       166 ~~~~~l~~~~~~l~  179 (196)
                      .++++|..+++++.
T Consensus       265 ~h~~il~~~~~~~~  278 (292)
T 1q33_A          265 SHSQFIKLVAEKRD  278 (292)
T ss_dssp             THHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHhc
Confidence            77889988887764

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.74  E-value=5.4e-18  Score=134.64  Aligned_cols=113  Identities=19%  Similarity=0.091  Sum_probs=77.8

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---------CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecce
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---------KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE  110 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---------~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~  110 (196)
                      .+|++++++.+           +++|||+++.+.         +.|+||||++|+||++++||+||++||||+.+.....
T Consensus        58 ~av~vl~~~~~-----------~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~  126 (209)
T 1g0s_A           58 HAAVLLPFDPV-----------RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKP  126 (209)
T ss_dssp             CEEEEEEEETT-----------TTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEE
T ss_pred             CEEEEEEEECC-----------CCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEE
Confidence            46777777742           237999976442         3599999999999999999999999999999876666


Q ss_pred             eeeeEEeeeCCCCceEEEEEEEEeeccc--cc---cCCcCccceeEEEeHHHHHhhccchh
Q 029277          111 LLGEWNFKSRAHNTDYQGYMFPLLVQDQ--LA---EWPEKNVRSRKWMSVAEARKVCQHWW  166 (196)
Q Consensus       111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~~--~~---~~~~~e~~~~~W~~~~el~~~~~~~~  166 (196)
                       ++.+ +..+. ......++|.+.....  ..   ...++|..++.|++++++.+++..+.
T Consensus       127 -l~~~-~~~~g-~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~g~  184 (209)
T 1g0s_A          127 -VLSF-LASPG-GTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGK  184 (209)
T ss_dssp             -EEEE-ESCTT-TBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTTS
T ss_pred             -eEEE-ecCCC-ccCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcCC
Confidence             6654 32222 2223456676664321  11   12345678999999999999876553

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.72  E-value=3.7e-17  Score=129.88  Aligned_cols=113  Identities=14%  Similarity=0.094  Sum_probs=76.0

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeE
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW  115 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~  115 (196)
                      .+|+++++..+..        ++.++||+++.+.    +.|+||||++|+||++++||+||++||||+.+..... ++.+
T Consensus        62 ~av~v~~v~~~~~--------~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~-l~~~  132 (212)
T 2dsc_A           62 DGVAVIPVLQRTL--------HYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAEC-SPAV  132 (212)
T ss_dssp             SEEEEEEEEECTT--------SCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEE-CCCE
T ss_pred             CEEEEEEEEeCCC--------CCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEE-eccE
Confidence            3566666554310        2358999986432    4699999999999999999999999999999877665 5544


Q ss_pred             EeeeCCCCceEEEEEEEEeecc--c-----cccCCcCccceeEEEeHHHHHhhcc
Q 029277          116 NFKSRAHNTDYQGYMFPLLVQD--Q-----LAEWPEKNVRSRKWMSVAEARKVCQ  163 (196)
Q Consensus       116 ~~~~~~~~~~~~~~~f~~~~~~--~-----~~~~~~~e~~~~~W~~~~el~~~~~  163 (196)
                       +..+.. .....++|.+.+..  .     .....++|..++.|++++++.+++.
T Consensus       133 -~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~  185 (212)
T 2dsc_A          133 -CMDPGL-SNCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLD  185 (212)
T ss_dssp             -ESCTTT-BCCEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHHHH
T ss_pred             -EcCCCc-cCceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHHHH
Confidence             222221 12234455554322  1     1122345779999999999998876

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.71  E-value=7.4e-18  Score=139.04  Aligned_cols=110  Identities=19%  Similarity=0.227  Sum_probs=72.8

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEee
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~  118 (196)
                      .++++|+++.+           .++|||+++.+ .+.|.+|||++|+||++++||+||++||||+.+..... +..+...
T Consensus       102 ~~v~avv~~~~-----------~~~vLLv~r~~~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~-~~~~~~~  169 (271)
T 2a6t_A          102 PVRGAIMLDMS-----------MQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRIN-PNEFIDM  169 (271)
T ss_dssp             CEEEEEEBCSS-----------SSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCC-TTCEEEE
T ss_pred             CeEEEEEEECC-----------CCEEEEEEEeCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeeee-eeeeccC
Confidence            46788888752           23899999865 47899999999999999999999999999999876433 3322211


Q ss_pred             eCCCCceEEEEEEEEeecccc---ccCCcCccceeEEEeHHHHHhhccc
Q 029277          119 SRAHNTDYQGYMFPLLVQDQL---AEWPEKNVRSRKWMSVAEARKVCQH  164 (196)
Q Consensus       119 ~~~~~~~~~~~~f~~~~~~~~---~~~~~~e~~~~~W~~~~el~~~~~~  164 (196)
                      .  ... ...++|.+......   ....++|+.+++|++++++.++...
T Consensus       170 ~--~~~-~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~  215 (271)
T 2a6t_A          170 T--IRG-QNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKN  215 (271)
T ss_dssp             E--ETT-EEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC--
T ss_pred             C--cCC-ceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHhc
Confidence            1  111 23445555443211   1123467899999999999877544

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.67  E-value=5.7e-16  Score=132.86  Aligned_cols=108  Identities=10%  Similarity=-0.025  Sum_probs=86.5

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (196)
                      +|||++|..+    |.|+||||++|.| ++++|+.||+.||||+.+..... ++.+.+.++.  .....++|.+..... 
T Consensus       253 ~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~-l~~~~h~~~h--~~~~~~~~~~~~~~~-  327 (369)
T 3fsp_A          253 RVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEP-IVSFEHAFSH--LVWQLTVFPGRLVHG-  327 (369)
T ss_dssp             EEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCC-CCEEEEECSS--EEEEEEEEEEEECCS-
T ss_pred             EEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecc-cccEEEEcce--EEEEEEEEEEEEcCC-
Confidence            8999998754    7899999999999 99999999999999999988776 7777665542  334556677665442 


Q ss_pred             ccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhc
Q 029277          140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS  180 (196)
Q Consensus       140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~  180 (196)
                          ..|..++.|++++++.++...+.++.+++.+.+.+..
T Consensus       328 ----~~e~~~~~Wv~~~el~~~~l~~~~~~il~~l~~~~~~  364 (369)
T 3fsp_A          328 ----GPVEEPYRLAPEDELKAYAFPVSHQRVWREYKEWASG  364 (369)
T ss_dssp             ----SCCCTTEEEEEGGGGGGSCCCHHHHHHHHHHHHHTC-
T ss_pred             ----CCCccccEEeeHHHhhhCCCCHHHHHHHHHHHHHhcC
Confidence                2456889999999999988888889999888776543

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.67  E-value=1.4e-16  Score=126.82  Aligned_cols=117  Identities=13%  Similarity=0.012  Sum_probs=80.5

Q ss_pred             CceEEEEEEEEEeeccCCcc---cccCCceEEEEEEEcCCCCEEecCcccCCCC-CHHHHHHHHHHHhhceeeeecce--
Q 029277           37 GRRQVVGCIPYRYKCVKQSL---DINEEDLEVLVISSQKGKGMLFPKGGWEIDE-SIQEAALRETIEEAGVTGIVECE--  110 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~---~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gE-s~~~Aa~REl~EEtGl~~~~~~~--  110 (196)
                      +.+.++.++++...   .++   +++ .+.++||.++ ..|.|+||||++|+|| ++++||+||++||||+.+....+  
T Consensus        31 ~~~~~~~~~l~~~~---~~vv~~i~~-~~~~vLl~~r-~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~  105 (212)
T 1u20_A           31 GYKHACHALLHAPS---QAKLFDRVP-IRRVLLMMMR-FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTE  105 (212)
T ss_dssp             SCEEEEEEEEEEEC---CCEETTTEE-CCEEEEEEEE-TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCG
T ss_pred             CCcccceEEEeCCC---ceEEEEEEe-cCCEEEEEEe-CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceee
Confidence            45677778887764   222   233 4568888877 4589999999999999 99999999999999999875431  


Q ss_pred             --eeeeEEeeeCCCCceEEEEEEEEeeccccc----------cCCcCccceeEEEeHHHHHhh
Q 029277          111 --LLGEWNFKSRAHNTDYQGYMFPLLVQDQLA----------EWPEKNVRSRKWMSVAEARKV  161 (196)
Q Consensus       111 --~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~----------~~~~~e~~~~~W~~~~el~~~  161 (196)
                        +++.+.+.++   .....++|.+.......          ...+.|..++.|++++++.+.
T Consensus       106 ~~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~  165 (212)
T 1u20_A          106 DDYRSSQVREHP---QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR  165 (212)
T ss_dssp             GGEEEEEEECTT---SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred             eeEEEeccccCC---CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhhh
Confidence              1444443322   34556677776543211          112346688999999998653

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.61  E-value=1.9e-14  Score=116.25  Aligned_cols=112  Identities=11%  Similarity=0.092  Sum_probs=77.5

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEec-CcccCCC------CC---HHHHHHHHHHHhhc
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEID------ES---IQEAALRETIEEAG  102 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lP-gG~ve~g------Es---~~~Aa~REl~EEtG  102 (196)
                      .+.++++++++.+            +++||.+|...     |.|.+| ||++++|      |+   +.+||+||++||||
T Consensus        58 ~h~av~v~v~~~~------------g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElG  125 (235)
T 2dho_A           58 LHRAFSVFLFNTE------------NKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELG  125 (235)
T ss_dssp             CEEEEEEEEECTT------------CCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHC
T ss_pred             eEEEEEEEEEcCC------------CEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHC
Confidence            4556777777642            27988887542     689999 5999999      88   49999999999999


Q ss_pred             eeeee-----cceeeeeEEeeeCCCCc---eEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhcc
Q 029277          103 VTGIV-----ECELLGEWNFKSRAHNT---DYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQ  163 (196)
Q Consensus       103 l~~~~-----~~~~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~  163 (196)
                      +.+..     ... ++.+.|.......   +...++|.+.... ......+|+.+++|++++++.+++.
T Consensus       126 i~~~~v~~~~l~~-l~~~~y~~~~~~~~~~~e~~~vf~~~~~~-~~~~~~~Ev~~~~wv~~~el~~~l~  192 (235)
T 2dho_A          126 IPLEEVPPEEINY-LTRIHYKAQSDGIWGEHEIDYILLVRMNV-TLNPDPNEIKSYCYVSKEELKELLK  192 (235)
T ss_dssp             CCGGGSCGGGSEE-EEEEEEEEECSSSBEEEEEEEEEEEECCC-CCCCCTTTEEEEEEECHHHHHHHHH
T ss_pred             CCccccChhhcEE-EEEEEEeccCCCccceeEEEEEEEEEECC-CCcCChHHEEEEEEEcHHHHHHHHh
Confidence            98652     233 6666655543222   2344566666432 2222346789999999999988754

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.60  E-value=1.8e-14  Score=117.26  Aligned_cols=113  Identities=12%  Similarity=0.084  Sum_probs=77.7

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-----CCCEEecC-cccCCC------CCH---HHHHHHHHHHhhc
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPK-GGWEID------ESI---QEAALRETIEEAG  102 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-----~~~W~lPg-G~ve~g------Es~---~~Aa~REl~EEtG  102 (196)
                      .+.++++++++.+            +++||.+|..     +|.|.+|+ |++++|      |++   .+||+||++||||
T Consensus        69 ~h~av~v~v~~~~------------g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElG  136 (246)
T 2pny_A           69 LHRAFSVVLFNTK------------NRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELG  136 (246)
T ss_dssp             CEEEEEEEEECTT------------CCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEEEEeCC------------CEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHC
Confidence            4556667777642            2788888754     26899995 999999      887   9999999999999


Q ss_pred             eeeee-----cceeeeeEEeeeCCCCc---eEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccc
Q 029277          103 VTGIV-----ECELLGEWNFKSRAHNT---DYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQH  164 (196)
Q Consensus       103 l~~~~-----~~~~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~  164 (196)
                      +.+..     ... ++.+.|..+....   +...++|.+.... ......+|+.+++|++++++.+++..
T Consensus       137 i~~~~v~~~~l~~-l~~~~y~~~~~~~~~~~e~~~vf~~~~~~-~~~~~~~Ev~~~~wv~~eel~~~l~~  204 (246)
T 2pny_A          137 IPGEQISPEDIVF-MTIYHHKAKSDRIWGEHEICYLLLVRKNV-TLNPDPSETKSILYLSQEELWELLER  204 (246)
T ss_dssp             CCTTTCCGGGSEE-EEEEEEEEESSSSBEEEEEEEEEEEECCC-CCCCCTTTEEEEEEECHHHHHHHHHH
T ss_pred             CCccccCccccEE-EEEEEEEecCCCceeeeEEEEEEEEEECC-CCCCChHHeeEEEEEeHHHHHHHHHh
Confidence            98652     233 6666655443222   2344566665432 22223468899999999999887543

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.58  E-value=3.3e-14  Score=114.65  Aligned_cols=116  Identities=22%  Similarity=0.257  Sum_probs=81.2

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCc-eEEEEEEEcCC-----CCEEecCcccCCCCC--------------------HH
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEED-LEVLVISSQKG-----KGMLFPKGGWEIDES--------------------IQ   90 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~-~~vLLv~~~~~-----~~W~lPgG~ve~gEs--------------------~~   90 (196)
                      .+|.++++|++++..         ++ .+|||++|...     |.|.||||++|++|+                    +.
T Consensus         6 ~~r~aA~lill~~~~---------~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~   76 (232)
T 3qsj_A            6 DIRKAATLVVIRDGA---------NKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALA   76 (232)
T ss_dssp             CEEEEEEEEEEEECG---------GGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHH
T ss_pred             CCcceEEEEEEEcCC---------CCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHH
Confidence            578899999998751         22 58999998764     689999999999987                    58


Q ss_pred             HHHHHHHHHhhceeeeecce--------------------------------------eeeeE-EeeeCC-CCceEEEEE
Q 029277           91 EAALRETIEEAGVTGIVECE--------------------------------------LLGEW-NFKSRA-HNTDYQGYM  130 (196)
Q Consensus        91 ~Aa~REl~EEtGl~~~~~~~--------------------------------------~l~~~-~~~~~~-~~~~~~~~~  130 (196)
                      .||+||++||||+.+.....                                      .|..+ .+..+. ....+.+++
T Consensus        77 ~aAiRE~~EE~Gl~l~~~~~~~~~~~~~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~F  156 (232)
T 3qsj_A           77 VTALRETAEEIGWLLAVRDGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRF  156 (232)
T ss_dssp             HHHHHHHHHHHSCCCSEECTTCCBCCSCCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEE
T ss_pred             HHHHHHHHHHhCceeccccccCcccChhhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEE
Confidence            99999999999998532110                                      01111 122222 234677888


Q ss_pred             EEEeeccccc-cCCcCccceeEEEeHHHHHhh
Q 029277          131 FPLLVQDQLA-EWPEKNVRSRKWMSVAEARKV  161 (196)
Q Consensus       131 f~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~  161 (196)
                      |.+....... ....+|..++.|++++++.+.
T Consensus       157 Fla~lpq~~~v~~d~~E~~~~~W~~p~eal~~  188 (232)
T 3qsj_A          157 FLCVGQHLGEPRLHGAELDAALWTPARDMLTR  188 (232)
T ss_dssp             EEEECSSCCCCCCCSSSEEEEEEEEHHHHHHH
T ss_pred             EEEECCCCCCCCCCCCceEEEEEEcHHHHHHH
Confidence            8887763221 334568899999999999643

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.58  E-value=7.7e-15  Score=123.60  Aligned_cols=118  Identities=14%  Similarity=0.173  Sum_probs=91.1

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhh-ceeeeecceeeeeE
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEA-GVTGIVECELLGEW  115 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEt-Gl~~~~~~~~l~~~  115 (196)
                      .++..|++|+.+.+             +|||+  .++| |.||||.+  +|+..++|+||++||| |+.++...+ +++|
T Consensus       181 ~p~~~vgaii~~~g-------------~vLL~--~~~G-W~LPG~~~--~~~~~~~a~RE~~EEttGl~v~~~~L-~~v~  241 (321)
T 3rh7_A          181 EGEIRLGAVLEQQG-------------AVFLA--GNET-LSLPNCTV--EGGDPARTLAAYLEQLTGLNVTIGFL-YSVY  241 (321)
T ss_dssp             HSCEEEEEEEESSS-------------CEEEB--CSSE-EBCCEEEE--SSSCHHHHHHHHHHHHHSSCEEEEEE-EEEE
T ss_pred             CCcceEEEEEEECC-------------EEEEe--eCCC-ccCCcccC--CCChhHHHHHHHHHHhcCCEEeeceE-EEEE
Confidence            47889999999853             69999  5557 99998755  4444569999999997 999999888 7776


Q ss_pred             EeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhh-ccchhHHHHHHHHHHHHhccccC
Q 029277          116 NFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKV-CQHWWMKEALDRLVMRLTSQQLH  184 (196)
Q Consensus       116 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~-~~~~~~~~~l~~~~~~l~~~~~~  184 (196)
                      +...    ......+|.+...++.       ..+++||++++++.. +.++.++.+|+.+++..+.|.+.
T Consensus       242 ~~~~----~~~~~i~f~~~~~~g~-------~~e~~~f~~~elp~~~~~~~~~~~~L~~y~~e~~~g~f~  300 (321)
T 3rh7_A          242 EDKS----DGRQNIVYHALASDGA-------PRQGRFLRPAELAAAKFSSSATADIINRFVLESSIGNFG  300 (321)
T ss_dssp             ECTT----TCCEEEEEEEEECSSC-------CSSSEEECHHHHTTCEESSHHHHHHHHHHHHTTSCSSCC
T ss_pred             EcCC----CceEEEEEEEEeCCCC-------eeeeEEECHHHCCCcccCCHHHHHHHHHHHHHhhcCCCC
Confidence            6322    2233457777765432       268999999999876 56799999999999888888765

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.52  E-value=1e-14  Score=116.61  Aligned_cols=93  Identities=13%  Similarity=0.041  Sum_probs=63.0

Q ss_pred             EEEEEEEcCCCCEEecCcccCCCC-CHHHHHHHHHHHhhceeeeec--ceeeeeEEeeeCCCCceEEEEEEEEeeccccc
Q 029277           64 EVLVISSQKGKGMLFPKGGWEIDE-SIQEAALRETIEEAGVTGIVE--CELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA  140 (196)
Q Consensus        64 ~vLLv~~~~~~~W~lPgG~ve~gE-s~~~Aa~REl~EEtGl~~~~~--~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~  140 (196)
                      ++||+.+. .+.|+||||++|+|| ++++||+||++||||+.+...  .. +..+.. .+........++|.+.......
T Consensus        66 ~~ll~~r~-~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~-l~~~~~-~~~~~~~~~~~~f~~~l~~~~~  142 (217)
T 2xsq_A           66 AILMQMRF-DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVER-TDYRSS-HVGSGPRVVAHFYAKRLTLEEL  142 (217)
T ss_dssp             EEEEEEET-TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCG-GGEEEE-EECSSSSEEEEEEEEECCHHHH
T ss_pred             cEEEEEcc-CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEE-EEEEee-cCCCCCeEEEEEEEEEeccccc
Confidence            46665554 588999999999999 999999999999999998742  22 222221 1122224556677776543211


Q ss_pred             ----------cCCcCccceeEEEeHHHHH
Q 029277          141 ----------EWPEKNVRSRKWMSVAEAR  159 (196)
Q Consensus       141 ----------~~~~~e~~~~~W~~~~el~  159 (196)
                                ...+.|..++.|+|++++.
T Consensus       143 ~~~e~~~~~~~~~~~E~~~v~~vPl~~l~  171 (217)
T 2xsq_A          143 LAVEAGATRAKDHGLEVLGLVRVPLYTLR  171 (217)
T ss_dssp             HHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred             eecccccccccccCCceeeEEEEEHHHhh
Confidence                      1123467899999999886

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.48  E-value=5.4e-13  Score=111.24  Aligned_cols=118  Identities=14%  Similarity=0.150  Sum_probs=82.0

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCE-EecCcccCCCCCHHHHHHHHHHHhhceeeeecc--
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVEC--  109 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W-~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~--  109 (196)
                      .+.++...+|+.+    |     ++.++|+.+|...     |.| .+++|++++||++.+||+||+.||+|+......  
T Consensus       117 ~~~~vh~~~~~~~----~-----~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l  187 (300)
T 3dup_A          117 RAYGVHLNGYVGA----G-----ADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQA  187 (300)
T ss_dssp             CEEEEEEEEEESC----G-----GGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTC
T ss_pred             EEEEEEEEEEEec----C-----CeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhc
Confidence            4456777777764    1     3457888777543     789 589999999999999999999999999865422  


Q ss_pred             eeeeeEEeeeCCCCc--eEEEEEEEEeeccccc-cCCcCccceeEEEeHHHHHhhccc
Q 029277          110 ELLGEWNFKSRAHNT--DYQGYMFPLLVQDQLA-EWPEKNVRSRKWMSVAEARKVCQH  164 (196)
Q Consensus       110 ~~l~~~~~~~~~~~~--~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~~~~  164 (196)
                      .+.+.+.|......+  ....++|.+....... ...++|+.+++|++++|+.+++..
T Consensus       188 ~~~g~i~y~~~~~~G~~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~v~~~El~~~l~~  245 (300)
T 3dup_A          188 IPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEAVRT  245 (300)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECCTTCCCCCTTSSEEEEEEEEHHHHHHHHHH
T ss_pred             cccceEEEEEecCCCeEEEEEEEEEEEecCCCcCCCCchHhheEEEECHHHHHHHHhc
Confidence            124555554432222  3345566666554332 334568899999999999988765

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=99.33  E-value=2.3e-12  Score=100.15  Aligned_cols=95  Identities=9%  Similarity=-0.047  Sum_probs=63.5

Q ss_pred             CCceEEEEEEEEEeeccCCcccccCC-ceEEEEEEEcCCCCEEecCcccCCCC-CHHHHHHHHHHHhhce-eeeecceee
Q 029277           36 KGRRQVVGCIPYRYKCVKQSLDINEE-DLEVLVISSQKGKGMLFPKGGWEIDE-SIQEAALRETIEEAGV-TGIVECELL  112 (196)
Q Consensus        36 ~~~r~~vgaii~~~~~~~~g~~~~~~-~~~vLLv~~~~~~~W~lPgG~ve~gE-s~~~Aa~REl~EEtGl-~~~~~~~~l  112 (196)
                      +++|.++.|+++.++   .+..|.-= -...+|++.+.+|.|+||||+||+|| |+++|+.||+.||+|+ .+..... +
T Consensus        18 ~~~~hach~mlya~~---~~~lfg~~p~r~~iLmQ~R~~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y-~   93 (214)
T 3kvh_A           18 PGWSHSCHAMLYAAN---PGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADY-L   93 (214)
T ss_dssp             TTCEEEEEEEEEEEE---EEEETTTEEEEEEEEEEEETTSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGE-E
T ss_pred             cCccEeeEEEEEcCC---ccccccccchhheEEEeeeeCCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeee-E
Confidence            467999999999987   22222100 01235666666799999999999999 9999999999999997 4665555 5


Q ss_pred             eeEEeeeCCCCceEEEEEEEEeecc
Q 029277          113 GEWNFKSRAHNTDYQGYMFPLLVQD  137 (196)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~f~~~~~~  137 (196)
                      ....+.++   .....++|.+....
T Consensus        94 ~s~~~~yp---~~V~LHfY~crl~~  115 (214)
T 3kvh_A           94 SSHLTEGP---HRVVAHLYARQLTL  115 (214)
T ss_dssp             EEEEC-------CEEEEEEEEECCH
T ss_pred             EEEeccCC---CEEEEEEEEEEeeC
Confidence            44443332   23456788877654

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=99.26  E-value=1.3e-11  Score=96.71  Aligned_cols=110  Identities=17%  Similarity=0.152  Sum_probs=69.9

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhc------eeeeecce
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG------VTGIVECE  110 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtG------l~~~~~~~  110 (196)
                      +.|..|.|+++..+   +      +..+|||+++. .+.|.||||++++||++++|++||+.||+|      ..+++...
T Consensus        56 g~R~sV~avil~~~---~------~~phVLLlq~~-~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~  125 (208)
T 3bho_A           56 GMRRTVEGVLIVHE---H------RLPHVLLLQLG-TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDC  125 (208)
T ss_dssp             CSEEEEEEEEEEEE---T------TEEEEEEEEEE-TTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEE
T ss_pred             CCceEEEEEEEEcC---C------CCcEEEEEEcC-CCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhhe
Confidence            55666555555443   1      44589999984 468999999999999999999999999999      55666666


Q ss_pred             eeeeEEeeeCC---------C--CceEEEEEEEEeeccccc-cCCcCccceeEEEeHHHHH
Q 029277          111 LLGEWNFKSRA---------H--NTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWMSVAEAR  159 (196)
Q Consensus       111 ~l~~~~~~~~~---------~--~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~el~  159 (196)
                       +|.|--..-+         +  .......+|.+....... ..|  ....+.=+++=|+-
T Consensus       126 -lg~wwRp~fet~~YPYlP~Hit~pKE~~kly~V~Lp~~~~f~vP--kn~kL~AvPLfely  183 (208)
T 3bho_A          126 -IGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVP--KNYKLVAAPLFELY  183 (208)
T ss_dssp             -EEEEEECSSSSCCBSSCCTTCCSCSEEEEEEEEECCSSEEEEEE--TTCEEEEEEHHHHT
T ss_pred             -EEEEecCCCCCcCCCCCCcccCchhhheeeeeEecCccceEecC--CCCeEEeecHHhhh
Confidence             7764211100         0  113345677766654321 112  23456667777763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	196
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	5e-17
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	7e-17
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	5e-11
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	7e-11
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	5e-09
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	5e-08
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	5e-06
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	1e-05
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	2e-05
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	4e-05
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	1e-04
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	3e-04
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	7e-04
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	0.003

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 5e-17
 Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 6/142 (4%)

Query: 42  VGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALRETIEE 100
            G I +R   +     ++   +E L++ +  G      PKG  E  E   E ALR T EE
Sbjct: 11  CGLIIFRRCLI---PKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEE 67

Query: 101 AGVTGIVECELLGE--WNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEA 158
           AG+       + G          +      Y    +    +        ++ +W+ + EA
Sbjct: 68  AGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEA 127

Query: 159 RKVCQHWWMKEALDRLVMRLTS 180
            ++ Q   MK AL      L S
Sbjct: 128 CQLAQFKEMKAALQEGHQFLCS 149

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 7e-17
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 16/131 (12%)

Query: 36  KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALR 95
            G ++   C+ +R            E+  +LV SS+     + P GG E +E    AA+R
Sbjct: 8   DGYKKRAACLCFRS---------ESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVR 58

Query: 96  ETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKN--VRSRKWM 153
           E  EEAGV G +   L+G +          ++ Y++ L+V + L +W +     R R+W 
Sbjct: 59  EVCEEAGVKGTLG-RLVGIFEN----QERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWF 113

Query: 154 SVAEARKVCQH 164
            + +A KV Q+
Sbjct: 114 KIEDAIKVLQY 124

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 55.8 bits (134), Expect = 5e-11
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117
            N +  EVL++  + G   +FPKG  E  ES++EAA+RE  EE GV    E  L      
Sbjct: 10  FNAKR-EVLLLRDRMGF-WVFPKGHPEPGESLEEAAVREVWEETGVR--AEVLLPLYPTR 65

Query: 118 KSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR 177
                  + + + F  L++ + A   E+ +    W S  EAR +         L+  + R
Sbjct: 66  YVNPKGVEREVHWF--LMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALER 123

Query: 178 L 178
           L
Sbjct: 124 L 124

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 55.6 bits (133), Expect = 7e-11
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 5/121 (4%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG--EW 115
              E+  ++++ +  G     P G  E  E+ +EA  RE +EE G++ +     LG  + 
Sbjct: 25  SKPENNTMVLVQAPNGAYF-LPGGEIEGTETKEEAIHREVLEELGIS-VEIGCYLGEADE 82

Query: 116 NFKSRAHNTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL 174
            F S    T Y    +  +         P +   +  W++  EA ++ +    + A+++ 
Sbjct: 83  YFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSHRWAVEKW 142

Query: 175 V 175
           +
Sbjct: 143 L 143

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 50.9 bits (121), Expect = 5e-09
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 58  INEEDLEVLVISSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN 116
           ++    + +++   K      FPKG  + DES  + A+RE  EE G        +     
Sbjct: 10  LDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFD--CSSRINPNEF 67

Query: 117 FKSRAHNTDYQGYMFPLLVQD-QLAEWPEKNVRSRKWMSVAE 157
                   + + Y+ P +  D +      K +   +W ++ +
Sbjct: 68  IDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMD 109

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 47.9 bits (113), Expect = 5e-08
 Identities = 20/127 (15%), Positives = 50/127 (39%), Gaps = 9/127 (7%)

Query: 61  EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSR 120
           E+ +VL++  ++    ++P G  E +E+  EA  RE  EE G+         G  +  + 
Sbjct: 10  ENGKVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAV 69

Query: 121 AHNTDYQGYMFPLLVQDQ---------LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 171
                       +   ++         L +    ++++ +W+ V E  ++     +++ +
Sbjct: 70  ERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIETFPNVRKVV 129

Query: 172 DRLVMRL 178
              +  L
Sbjct: 130 SLALSTL 136

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 42.1 bits (98), Expect = 5e-06
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 4/120 (3%)

Query: 58  INEEDLEVLVISSQKGKGML--FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115
           I ++D  +LV    +G  +    P G  E  ESI +A  RE +EE G + +    L G +
Sbjct: 10  IEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLP-EVLTGIY 68

Query: 116 NFKSRAHNTDYQGYMFPLLVQDQLAEWP-EKNVRSRKWMSVAEARKVCQHWWMKEALDRL 174
           ++   ++ T Y  + F   V     +   +  +    W S+ E R           +  +
Sbjct: 69  HWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCI 128

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 41.3 bits (96), Expect = 1e-05
 Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 10/125 (8%)

Query: 58  INEEDLEVLVISSQKGKGML-------FPKGGWEIDESIQEAALRETIEEAGVTGIVECE 110
           +NE   ++L++  +   G          P G  E  E+ Q+AA+RE  EE G+      +
Sbjct: 20  LNERG-DILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPV-K 77

Query: 111 LLGEWNFKSRAHNTDY-QGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKE 169
            LG +  +           ++        LA      +    ++S  +  ++     ++ 
Sbjct: 78  FLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAGQIRM 137

Query: 170 ALDRL 174
              +L
Sbjct: 138 YQTKL 142

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 55  SLDINEEDLEVLVISSQKG--KGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECEL 111
           +L +  +   VL+   ++G   G      G  +  E+I++ A RE  EE+G+T +     
Sbjct: 8   TLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLT-VDALHK 66

Query: 112 LGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAE 157
           +G+  F            +             E +     W  + +
Sbjct: 67  VGQIVF--EFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQ 110

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 39.8 bits (92), Expect = 4e-05
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 56  LDINEEDLEVLVI--SSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECELL 112
              NE ++ +L++  + +   G      G  + DES+ +AA R   E  G+   V  E +
Sbjct: 18  FGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLE-NVYMEQV 76

Query: 113 GEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVC-QHWWM-KEA 170
           G +    R          +  L+     +       +  W+++ E   +   H  M  +A
Sbjct: 77  GAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPALIFDHPEMVDKA 136

Query: 171 LDRLVMRLT 179
            + +  + +
Sbjct: 137 REMMKQKAS 145

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 12/91 (13%), Positives = 23/91 (25%), Gaps = 1/91 (1%)

Query: 59  NEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118
            +  L+ + I  +       P G  +  E I     RE  EEA  +   +         +
Sbjct: 135 GKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQ-KTSAEKREIEE 193

Query: 119 SRAHNTDYQGYMFPLLVQDQLAEWPEKNVRS 149
                      +      D         + +
Sbjct: 194 KLHKLFSQDHLVIYKGYVDDPRNTDNAWMET 224

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 3/111 (2%)

Query: 51  CVKQSLDINEEDLEVLVI--SSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIV 107
            V    +   + L+VL+I       +     P G    +ES +++ LRET EE GV    
Sbjct: 42  MVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQ 101

Query: 108 ECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEA 158
           E         +       +   +  L    +       + +   W ++   
Sbjct: 102 ENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERH 152

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 36.4 bits (83), Expect = 7e-04
 Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 10/113 (8%)

Query: 58  INEEDLEVLVI--SSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVE------ 108
           +     E L+   +++  +G    P G  + DE+++ A  R T+ E G+   +       
Sbjct: 25  VENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYG 84

Query: 109 -CELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARK 160
             +   + NF      T Y    F   V ++    P++     +W++      
Sbjct: 85  VWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLA 137

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 77  LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 136
               G  + DE + E+A RE  EE G+   V     G++ F+    N    G +F  +  
Sbjct: 62  ATAGGVVQADEQLLESARREAEEELGIA-GVPFAEHGQFYFED--KNCRVWGALFSCVSH 118

Query: 137 DQLAEWPEKNVRSRKWMSVAEARKVCQHW--WMKEALDRLVMR 177
              A   ++ V    W++  E    C  +     +AL   + R
Sbjct: 119 GPFALQEDE-VSEVCWLTPEEITARCDEFTPDSLKALALWMKR 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	196
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.93
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.92
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.91
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.9
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.89
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.89
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.89
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.88
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.88
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.88
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.87
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.86
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.86
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.85
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.84
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.83
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.83
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.81
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.79
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.77
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.77
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.76
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.75
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.74
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.71
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.68
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.65
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.55
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.54
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.37

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=6.5e-25  Score=159.70  Aligned_cols=123  Identities=27%  Similarity=0.267  Sum_probs=97.0

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEee
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~  118 (196)
                      ++.||||+++.+            .++||+++ +.|.|.||||+++.|||+.+||.||++||||+.+..... ++.+.+.
T Consensus         2 ~v~agavv~~~~------------~~vLl~~~-~~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~-~~~~~~~   67 (126)
T d1vcda1           2 ELGAGGVVFNAK------------REVLLLRD-RMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLP-LYPTRYV   67 (126)
T ss_dssp             EEEEEEEEECTT------------SCEEEEEC-TTSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEE-EEEEEEE
T ss_pred             EEEEEEEEEECC------------CEEEEEEc-CCCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEE-Eeeeeec
Confidence            578999999863            26888775 458999999999999999999999999999999988766 6665555


Q ss_pred             eCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHH
Q 029277          119 SRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  178 (196)
Q Consensus       119 ~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l  178 (196)
                      .+. .....+++|.+.....  ..+++++.+++|++++++.+++.++..+.+++.+++++
T Consensus        68 ~~~-~~~~~~~~~~~~~~~~--~~~~~e~~~~~W~~~~e~~~~~~~~~~~~il~~~~~~l  124 (126)
T d1vcda1          68 NPK-GVEREVHWFLMRGEGA--PRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERL  124 (126)
T ss_dssp             CTT-SCEEEEEEEEEEEESC--CCCCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHHHHS
T ss_pred             cCC-CeEEEEEEEEEEEcCC--CCCCccceEEEEEEHHHHhhccCChHHHHHHHHHHHhC
Confidence            432 3344556666655432  22455778999999999999999999999999888765

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=5.7e-24  Score=155.70  Aligned_cols=130  Identities=20%  Similarity=0.180  Sum_probs=98.7

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEE--
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN--  116 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~--  116 (196)
                      .++|+|+++..   +      ++.++||++++. .|.|.+|||+++.||++.+||+||++||||+.+..... +..+.  
T Consensus         3 raag~vv~~~~---~------~~~~~Ll~~r~~~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~   72 (137)
T d1ktga_           3 KAAGLVIYRKL---A------GKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTI-HEDCHET   72 (137)
T ss_dssp             EEEEEEEEEEE---T------TEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEE-EEEEEEE
T ss_pred             EEEEEEEEEEc---C------CCEEEEEEEEcCCCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeee-eeeeeee
Confidence            47899999976   3      566899998864 47899999999999999999999999999999765444 22211  


Q ss_pred             eeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHh
Q 029277          117 FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT  179 (196)
Q Consensus       117 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~  179 (196)
                      .............+|.+.........++.|+.+++|++++++.+++.+++++.+|+.+.++|.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~L~  135 (137)
T d1ktga_          73 LFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFLA  135 (137)
T ss_dssp             EEEEETTEEEEEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             eecCCCcceEEEEEEEEEecCCCCcCCCcceEEEEEEEHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence            112222334445556656555444456678899999999999999999999999999888774

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.91  E-value=2e-23  Score=154.53  Aligned_cols=133  Identities=18%  Similarity=0.191  Sum_probs=94.4

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~  114 (196)
                      |+.+|++|+.+.             +++||+++.+.   +.|.||||+++.|||+.+||+||++||||+.+..... ++.
T Consensus         2 P~v~va~ii~~~-------------~k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~-~~~   67 (146)
T d2b0va1           2 PNVTVAAVIEQD-------------DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVL-TGI   67 (146)
T ss_dssp             CEEEEEEECEET-------------TEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEE-EEE
T ss_pred             CeEEEEEEEEeC-------------CEEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceE-EEE
Confidence            456677776543             28999998765   4699999999999999999999999999999988877 777


Q ss_pred             EEeeeCCCCceEEEEEEEEeeccccc-cCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhccccC
Q 029277          115 WNFKSRAHNTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLH  184 (196)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~~~~  184 (196)
                      +.+...........++|.+....... ...++|..+++|++++++.+..........++.+.+.++...+|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~v~~~l~~y~~~~~~P  138 (146)
T d2b0va1          68 YHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDYHAGKRYP  138 (146)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHHHTTCCBC
T ss_pred             EEEecCCCCeEEEEEEEEEEeecCCCCCCCCcceeEEEEeeHHHHhhCccccCCHHHHHHHHHHHhCCCCC
Confidence            77776665556666666666544332 33446779999999999987654322222333333445555555

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.90  E-value=2.5e-24  Score=160.84  Aligned_cols=133  Identities=14%  Similarity=0.201  Sum_probs=99.9

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~  113 (196)
                      .++++|++|||..+   +      ++.+|||++|...   |.|.||||+++.|||+++||.||++||||+.+..... ++
T Consensus         8 ~~~v~Vd~Vi~~~~---~------~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~-~~   77 (147)
T d2fb1a2           8 TFYLGIDCIIFGFN---E------GEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQ-VG   77 (147)
T ss_dssp             CEEEEEEEEEEEEE---T------TEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEE-EE
T ss_pred             CcceEEEEEEEEEe---C------CcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceee-ee
Confidence            56788889999865   2      4568999998653   7899999999999999999999999999999887777 77


Q ss_pred             eEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhcc
Q 029277          114 EWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ  181 (196)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~  181 (196)
                      .+.....+...+....+|.+...........++..+++|+++++++++..+  +.+++..++++++++
T Consensus        78 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~lp~lafD--H~~ii~~a~~~lr~k  143 (147)
T d2fb1a2          78 AFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPALIFD--HPEMVDKAREMMKQK  143 (147)
T ss_dssp             EECCTTSSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCCBSTT--HHHHHHHHHHHHHHH
T ss_pred             EecCCcccCCCceEEEEEEEEecCCcccCCCcchhheEEecHHhchhcccC--HHHHHHHHHHHHHHH
Confidence            665444433445555666666544332223346688999999999887653  467888888887654

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.7e-23  Score=152.40  Aligned_cols=119  Identities=29%  Similarity=0.403  Sum_probs=85.2

Q ss_pred             cCC-CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeeccee
Q 029277           34 YQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (196)
Q Consensus        34 ~~~-~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~  111 (196)
                      |+. ++|.+||+|+|+.+          ++..+||+++++ ++.|.||||++++|||+.+||+||++||||+.+..... 
T Consensus         5 ~~~~~~r~~a~~vv~~~~----------~~~~~lL~~~~~~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-   73 (135)
T d2fvva1           5 YDGDGYKKRAACLCFRSE----------SEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRL-   73 (135)
T ss_dssp             BCTTSCEEEEEEEEESST----------TCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEE-
T ss_pred             cCCCCCceEEEEEEEEec----------CCCEEEEEEEeCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEE-
Confidence            444 78999999999875          344667776654 47899999999999999999999999999999988776 


Q ss_pred             eeeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccch
Q 029277          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      ++.+.+..  ......++.|.+.........+.+++.+++|++++++.+++.+.
T Consensus        74 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~  125 (135)
T d2fvva1          74 VGIFENQE--RKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYH  125 (135)
T ss_dssp             EEEEEETT--TTEEEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTTT
T ss_pred             EEEEeecc--CCccEEEEEEEEEeecCCCCCCCCceeEEEEEEHHHHHHHHhcC
Confidence            66554332  22223333333332222222234566889999999999998653

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.9e-22  Score=149.68  Aligned_cols=141  Identities=24%  Similarity=0.251  Sum_probs=102.0

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeE-
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW-  115 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~-  115 (196)
                      ...++|+|+|+...   -..++.++.++||+++..+ +.|.+|||+++.|||+.+||+||++||||+.+..... +..+ 
T Consensus         7 ~~~~~g~i~f~~~~---~~~~~~~~~~~LL~~~~~~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~-~~~~~   82 (153)
T d1xsba_           7 ALRACGLIIFRRCL---IPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTI-IEGFK   82 (153)
T ss_dssp             SEEEEEEEEEEECS---SCSSSSTTEEEEEEEESSTTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEE-CSSCC
T ss_pred             chheeEEEEEeccc---cccccCCCCEEEEEEecCCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeee-eccce
Confidence            34568999998641   1123337789999998764 6799999999999999999999999999999765443 3321 


Q ss_pred             -EeeeCCCCceEEEEEEEEeeccc-cccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhccc
Q 029277          116 -NFKSRAHNTDYQGYMFPLLVQDQ-LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ  182 (196)
Q Consensus       116 -~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~~  182 (196)
                       ..............+|.+..... ....+..|+.+++|++++++.+++.++.++.+|..+.+.|.+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~iL~~~~~~L~~~~  151 (153)
T d1xsba_          83 RELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQFLCSIE  151 (153)
T ss_dssp             EEEEEESSSCEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHTCSHHHHHHHHHHHHHHTTSS
T ss_pred             eeecccccCceeEEEEEEEEEeecccccCCCcceeEEEEEEHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence             12222223334444455544432 23334567899999999999999999999999999999987653

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.89  E-value=1.4e-22  Score=150.24  Aligned_cols=126  Identities=21%  Similarity=0.285  Sum_probs=90.0

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEe
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF  117 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~  117 (196)
                      .|.+|++|+++.+           +..+| +.+++.|.|.||||+++.|||+.+||+||++||||+++..... ++.+..
T Consensus        16 ~r~~~~~vi~~~~-----------~~~ll-l~~~~~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~   82 (147)
T d2azwa1          16 TRYAAYIIVSKPE-----------NNTMV-LVQAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCY-LGEADE   82 (147)
T ss_dssp             ECCEEEEECEEGG-----------GTEEE-EEECTTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEEE
T ss_pred             CCCeEEEEEEECC-----------CCEEE-EEEcCCCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeE-EEEEEE
Confidence            4667888888764           22444 4455568999999999999999999999999999999888776 665543


Q ss_pred             ee--CCCCce--EEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHH
Q 029277          118 KS--RAHNTD--YQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR  177 (196)
Q Consensus       118 ~~--~~~~~~--~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~  177 (196)
                      ..  ......  ...++|.+...... ..+.+|..+++|++++++.+.+.++.++.+++.++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~e~~~~l~~~~~r~~l~~~la~  145 (147)
T d2azwa1          83 YFYSNHRQTAYYNPGYFYVANTWRQL-SEPLERTNTLHWVAPEEAVRLLKRGSHRWAVEKWLAA  145 (147)
T ss_dssp             EEEETTTTEEEEEEEEEEEEEEEEEC-SSCC-CCSEEEEECHHHHHHHBSCHHHHHHHHHHHHC
T ss_pred             EeeeccCCceEEEEEEEEEEEecccc-CCCCccceEEEEEEHHHHHHHcCChhHHHHHHHHHhc
Confidence            32  222222  23344554433322 3345577899999999999999999999999877654

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.5e-22  Score=148.11  Aligned_cols=111  Identities=13%  Similarity=0.070  Sum_probs=83.9

Q ss_pred             EEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccccc
Q 029277           64 EVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE  141 (196)
Q Consensus        64 ~vLLv~~~~~--~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  141 (196)
                      ++||+++++.  |.|.||||++|+|||+++||.||++||||+.+..... ++...+..    .....++|.+........
T Consensus        15 ~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~-~~~~~~~~----~~~~~~~f~~~~~~~~~~   89 (131)
T d1vk6a2          15 SILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRY-VTSQPWPF----PQSLMTAFMAEYDSGDIV   89 (131)
T ss_dssp             EEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEE-EEEEEEET----TEEEEEEEEEEEEECCCC
T ss_pred             EEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeE-EEEeccCc----CceEEEEEEEEEcCCccc
Confidence            7999987653  6799999999999999999999999999999988776 65544322    234556676666544434


Q ss_pred             CCcCccceeEEEeHHHHHhhccchhH-HHHHHHHHHHHh
Q 029277          142 WPEKNVRSRKWMSVAEARKVCQHWWM-KEALDRLVMRLT  179 (196)
Q Consensus       142 ~~~~e~~~~~W~~~~el~~~~~~~~~-~~~l~~~~~~l~  179 (196)
                      ....|+.+++|++++++..+...... +.+++.+++..+
T Consensus        90 ~~~~E~~~~~W~~~~el~~l~~~~~i~r~li~~~l~~~r  128 (131)
T d1vk6a2          90 IDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCR  128 (131)
T ss_dssp             CCTTTEEEEEEEETTSCCSCCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCccEEEEEEEcHHHHhhCCCChHHHHHHHHHHHHHHH
Confidence            34567899999999999888665554 566777666554

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.88  E-value=7.2e-22  Score=147.99  Aligned_cols=133  Identities=14%  Similarity=0.057  Sum_probs=93.6

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-------CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeeccee
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-------KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-------~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~  111 (196)
                      ..+||+++++.+            ++|||++++..       |.|.||||+++.||++.+||+||++||||+.+..... 
T Consensus        12 ~~a~~~vi~~~~------------g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-   78 (158)
T d1sjya_          12 LRAAGVVLLNER------------GDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKF-   78 (158)
T ss_dssp             EEEEEEEEBCTT------------CCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEE-
T ss_pred             eeEEEEEEEeCC------------CEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEE-
Confidence            346666766642            37999998642       5799999999999999999999999999999988877 


Q ss_pred             eeeEEeeeCCCCceEEEEEEEEeecccc--ccCCcCccceeEEEeHHHHHhhccchhH--HHHHHHHHHHHhccccCC
Q 029277          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWMSVAEARKVCQHWWM--KEALDRLVMRLTSQQLHG  185 (196)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~~~~~~~--~~~l~~~~~~l~~~~~~~  185 (196)
                      ++.+.+..+... ....++|.+......  ...+++|+.+++|++++++.+++..+..  ......+.+.+++.+++.
T Consensus        79 i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~~~~~~~~d~~~~~g~~~  155 (158)
T d1sjya_          79 LGAYLGRFPDGV-LILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAGQIRMYQTKLFYADALREKGFPA  155 (158)
T ss_dssp             EEEEEEECTTSC-EEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTTCBSCTHHHHHHHHHHHHHTCCC
T ss_pred             EEEEEEECCCCC-EEEEEEEEEEEcCCcccCCCCCcceEEEEEEEHHHHhhhhhCCcchhHhHHHHHHHHHHhCCCCC
Confidence            887776655433 344455655544332  2334467899999999999988654432  233334455666666653

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.88  E-value=4.2e-23  Score=153.22  Aligned_cols=125  Identities=15%  Similarity=0.110  Sum_probs=86.6

Q ss_pred             EEEEEEEEeeccCCcccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeee-
Q 029277           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS-  119 (196)
Q Consensus        41 ~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~-  119 (196)
                      .+++|+++++             +|||++++..|.|.||||++|.||++.+||+||++||||+.+..... +..+.+.. 
T Consensus         3 ~a~~vi~~d~-------------kvLl~~r~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~   68 (152)
T d1k2ea_           3 VTSGVLVENG-------------KVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGF-TYGIIDENA   68 (152)
T ss_dssp             EEEEECEETT-------------EEEEEECTTTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCC-CCCCBSSSE
T ss_pred             EEEEEEEECC-------------EEEEEEEcCCCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeeeEE-EEEEecccc
Confidence            5667777642             79999998889999999999999999999999999999999877654 33222111 


Q ss_pred             -CCCCceEEEEEEEEeeccc---------cccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHHHHhc
Q 029277          120 -RAHNTDYQGYMFPLLVQDQ---------LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS  180 (196)
Q Consensus       120 -~~~~~~~~~~~f~~~~~~~---------~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~  180 (196)
                       ........ ..+.......         ....+.+|..+++|++++++.++..+++++.+++.+++.+.+
T Consensus        69 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~  138 (152)
T d1k2ea_          69 VERPMPLVI-LEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIETFPNVRKVVSLALSTLYR  138 (152)
T ss_dssp             EECCCCSEE-EEEEEECSSCEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGSCBSTTHHHHHHHHHHHHHH
T ss_pred             ccCcceEEE-EEEEEecCCCceEEEEEeEeeecCCCCcceEEEeEHHHHhhCCCCHHHHHHHHHHHHHHhh
Confidence             01111111 1111111000         011234567899999999999999999999999888877754

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.2e-22  Score=148.77  Aligned_cols=123  Identities=16%  Similarity=0.026  Sum_probs=91.1

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~  114 (196)
                      .|+.+.+++.+.+             +|||++|+++   |.|.+|||+++.|||+.+||+||++||||+.+..... ++.
T Consensus         4 ~r~~~~v~i~~~~-------------~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~-~~~   69 (156)
T d1irya_           4 SRLYTLVLVLQPQ-------------RVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHK-VGQ   69 (156)
T ss_dssp             CEEEEEECEECSS-------------EEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCE-EEE
T ss_pred             cEEEEEEEEEECC-------------EEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEE-EEE
Confidence            5677777776642             8999998764   7899999999999999999999999999999887776 777


Q ss_pred             EEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHH
Q 029277          115 WNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  176 (196)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  176 (196)
                      +.+...........++|.+.....  .....+..+.+|+++++++.....+.++..+..+++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ee~~~~W~~~~~l~~~~~~~~d~~~l~~~l~  129 (156)
T d1irya_          70 IVFEFVGEPELMDVHVFCTDSIQG--TPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQ  129 (156)
T ss_dssp             EEEEETTCSCEEEEEEECCCCBCS--CCCCCSSEEEEEEETTCCCSTTTCSSHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEEEEEEEEEeecC--cccCCchhheEEeEHHHCCcCCCCccHHHHHHHHhC
Confidence            766666555544455554432222  222334567899999999888766777776666554

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.86  E-value=6.6e-23  Score=153.27  Aligned_cols=109  Identities=19%  Similarity=0.218  Sum_probs=71.7

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEee
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~  118 (196)
                      .++|||+++.+           ..+|||+++.+ ++.|.||||+++.|||+.+||+||++||||+++..... ...+...
T Consensus         3 ~v~Gaii~~~~-----------~~kvLLvk~~~~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~-~~~~~~~   70 (151)
T d2a6ta2           3 PVRGAIMLDMS-----------MQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRIN-PNEFIDM   70 (151)
T ss_dssp             CEEEEEEBCSS-----------SSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCC-TTCEEEE
T ss_pred             cEEEEEEEECC-----------CCEEEEEEEeCCCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeee-cceEEee
Confidence            36799999863           34899999854 47899999999999999999999999999999765443 3233222


Q ss_pred             eCCCCceEEEEEEEEeeccc--cccCCcCccceeEEEeHHHHHhhc
Q 029277          119 SRAHNTDYQGYMFPLLVQDQ--LAEWPEKNVRSRKWMSVAEARKVC  162 (196)
Q Consensus       119 ~~~~~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~~  162 (196)
                      .... . ...++|.......  ....+.+|+.+++|++++++..+.
T Consensus        71 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~~~  114 (151)
T d2a6ta2          71 TIRG-Q-NVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFK  114 (151)
T ss_dssp             EETT-E-EEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC
T ss_pred             cccC-c-eEEEEEEEEeccCCcccccCCCccceEEEEEHHHhhhhh
Confidence            2221 1 2222333222222  222345678999999999987653

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.86  E-value=2.3e-21  Score=146.89  Aligned_cols=129  Identities=17%  Similarity=0.186  Sum_probs=83.7

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecce-eeee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE-LLGE  114 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~-~l~~  114 (196)
                      ++|..||+||++.+            ++|||++|.+. |.|.+|||+||.|||+++||+||++||||+.+..... ..+.
T Consensus        12 ~yR~~Vg~vI~n~~------------~~vLL~kR~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~~~~~~~   79 (165)
T d1jkna_          12 GYRRNVGICLMNND------------KKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYW   79 (165)
T ss_dssp             SEEEEEEEEEECTT------------SCEEEEEESSSTTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEEEECSSC
T ss_pred             CccccEEEEEEeCC------------CEEEEEEEcCCCCcccCccceEcCCCChhHHHHHHHHHhhcccccccccccccc
Confidence            67999999998753            37999998765 8899999999999999999999999999999765332 0111


Q ss_pred             EEeeeC------------CCCceEEEEEEEEeeccc--cc-----cCCcCccceeEEEeHHHHHhhccchhHHHHHHHHH
Q 029277          115 WNFKSR------------AHNTDYQGYMFPLLVQDQ--LA-----EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  175 (196)
Q Consensus       115 ~~~~~~------------~~~~~~~~~~f~~~~~~~--~~-----~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~  175 (196)
                      +.....            ........++|.+.....  ..     .....|+.+++|++++++.+.+.. .-++.+++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~~i~~-fk~~v~~~~l  158 (165)
T d1jkna_          80 LTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVE-FKKPVYKEVL  158 (165)
T ss_dssp             EEEECCHHHHHHHHHHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHHHSCG-GGHHHHHHHH
T ss_pred             ccccccceeeceeeeeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHHhcch-hhHHHHHHHH
Confidence            111110            111122333444333221  11     112347789999999999987643 2245555555


Q ss_pred             HHH
Q 029277          176 MRL  178 (196)
Q Consensus       176 ~~l  178 (196)
                      +.+
T Consensus       159 ~~f  161 (165)
T d1jkna_         159 SVF  161 (165)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            443

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.85  E-value=1.1e-20  Score=141.54  Aligned_cols=111  Identities=18%  Similarity=0.200  Sum_probs=82.4

Q ss_pred             ceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecc
Q 029277           62 DLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD  137 (196)
Q Consensus        62 ~~~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~  137 (196)
                      +.++||++|...    +.|.||||++++|||+.+||.||++||||+.+..... ++.+.+.... ..+...++|.+....
T Consensus        20 ~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~   97 (155)
T d2b06a1          20 TQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQL-VGIKNWPLDT-GGRYIVICYKATEFS   97 (155)
T ss_dssp             TTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEE-EEEEEEECTT-SCEEEEEEEEECEEE
T ss_pred             CCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEE-EEEEEeecCC-CCeEEEEEEEEEecC
Confidence            348888887643    5699999999999999999999999999999988777 7776665443 334555666665333


Q ss_pred             ccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHH
Q 029277          138 QLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  176 (196)
Q Consensus       138 ~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  176 (196)
                      +.  ....|..+++|++++++.++...+....+++.+..
T Consensus        98 ~~--~~~~e~~~~~W~~~~el~~l~~~~~~~~~~~~~~~  134 (155)
T d2b06a1          98 GT--LQSSEEGEVSWVQKDQIPNLNLAYDMLPLMEMMEA  134 (155)
T ss_dssp             EC--CCCBTTBEEEEEEGGGGGGSCBCTTHHHHHHHHHC
T ss_pred             Cc--cCCCchheEEEEEHHHhccCCCCchhHHHHHHHhC
Confidence            22  23356789999999999998777777776655443

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.7e-20  Score=140.87  Aligned_cols=114  Identities=18%  Similarity=0.217  Sum_probs=80.8

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecce-eee
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE-LLG  113 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~-~l~  113 (196)
                      +..+++++|++.+            ++|||++|.+.   |.|.+|||++++|||+.+||+||++||||+.+..... .++
T Consensus        17 p~~~v~~vi~~~~------------~~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~   84 (160)
T d1ryaa_          17 PLVSLDFIVENSR------------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYG   84 (160)
T ss_dssp             CEEEEEEEEECTT------------SCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEE
T ss_pred             CEEEEEEEEEeCC------------CeEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEE
Confidence            4556777777642            37999998753   7899999999999999999999999999999775432 144


Q ss_pred             eEEeeeCCC------CceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhcc
Q 029277          114 EWNFKSRAH------NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQ  163 (196)
Q Consensus       114 ~~~~~~~~~------~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~  163 (196)
                      .+.+.....      ..++..++|.+.........+++|+.+++|++++++.++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~e~~W~~~~el~~~~~  140 (160)
T d1ryaa_          85 VWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDN  140 (160)
T ss_dssp             EEEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTT
T ss_pred             EEEEeccccccCCCcceEEEEEEEEEEecCCCccCCCcceEEEEEEEHHHhhcCcc
Confidence            444433221      12334455666555544444566789999999999987643

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=4e-21  Score=139.56  Aligned_cols=106  Identities=17%  Similarity=0.210  Sum_probs=80.1

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (196)
                      +|||++|..+    |.|.||||+++.|||+.+||.||++||||+.+..... ++.+.+...  ......++|.+......
T Consensus        17 ~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~   93 (129)
T d1puna_          17 EIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSL-FEKLEYEFP--DRHITLWFWLVERWEGE   93 (129)
T ss_dssp             CEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCC-SEEEEEECS--SEEEEEEEEECCCCSSC
T ss_pred             EEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCcccccee-eeEEeeccc--ccceeEEEEEEeeccCc
Confidence            7999987543    6899999999999999999999999999999988776 777666543  33445556665543322


Q ss_pred             ccCCcCccceeEEEeHHHHHhhccchhHHHHHHHH
Q 029277          140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL  174 (196)
Q Consensus       140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~  174 (196)
                      .  ...|+.+++|++++++......+.++.+++.+
T Consensus        94 ~--~~~E~~~~~W~~~~el~~~~~~~~~~~ii~~L  126 (129)
T d1puna_          94 P--WGKEGQPGEWMSLVGLNADDFPPANEPVIAKL  126 (129)
T ss_dssp             C--CTTSSSCCEEECGGGCCTTTSCGGGHHHHHHH
T ss_pred             C--CCCccceEEEEEHHHcccCCCCcchHHHHHHH
Confidence            2  23467889999999998876666667777654

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.83  E-value=2.4e-20  Score=145.87  Aligned_cols=136  Identities=17%  Similarity=0.192  Sum_probs=96.1

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~---~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~  113 (196)
                      .+.++|+++||..+..+       ++.+|||++|...   |.|.||||+++.|||+.+||.||++||||+.+..... .+
T Consensus        35 ~P~v~vd~vi~~~~~~~-------~~l~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l-~~  106 (202)
T d2fmla2          35 KPSLTVDMVLLCYNKEA-------DQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENI-EQ  106 (202)
T ss_dssp             CCEEEEEEEEEEEETTT-------TEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGE-EE
T ss_pred             CCccEEEEEEEEEecCC-------CeeEEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeeccee-ee
Confidence            45678888888765221       4568999999764   7899999999999999999999999999999766543 33


Q ss_pred             eEEeeeC--CCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccc-----------------------hhHH
Q 029277          114 EWNFKSR--AHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQH-----------------------WWMK  168 (196)
Q Consensus       114 ~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~-----------------------~~~~  168 (196)
                      ...+...  +...+....+|.+..... ...+.+|..+++||+++++......                       -.+.
T Consensus       107 ~~~~~~~~r~~~~~~i~~~~~~~~~~~-~~~~~~e~~~~~Wf~ld~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LaFDH~  185 (202)
T d2fmla2         107 LHSFSRPDRDPRGWVVTVSYLAFIGEE-PLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFDHS  185 (202)
T ss_dssp             EEEECCTTSSTTSSEEEEEEEEECCCC-CCCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTTHH
T ss_pred             eeecccCCccccceEEEEEEEEEeCCC-CcCCCcceeeEEEEeHHHCcchhcccchhhhhhhhhhhhccccCCCcccCHH
Confidence            3333332  334455566666655443 3335567899999999998753221                       1246


Q ss_pred             HHHHHHHHHHhcc
Q 029277          169 EALDRLVMRLTSQ  181 (196)
Q Consensus       169 ~~l~~~~~~l~~~  181 (196)
                      ++|..++++++.+
T Consensus       186 ~Ii~~Al~Rlr~k  198 (202)
T d2fmla2         186 EIIIKAFNRVVDK  198 (202)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            7888888877653

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=5.6e-19  Score=133.07  Aligned_cols=122  Identities=21%  Similarity=0.244  Sum_probs=84.5

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHhhceeeeecceee
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECELL  112 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lP-gG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l  112 (196)
                      +.+|.+++++.+            ++|||.+|...     |.|.+| ||++++|||+++||+||++||||+....... +
T Consensus        30 h~~v~v~v~~~~------------g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~-~   96 (161)
T d2fkba1          30 HRATYIVVHDGM------------GKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAE-H   96 (161)
T ss_dssp             EEEEEEEEECSS------------SCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEE-E
T ss_pred             EeEEEEEEEeCC------------CCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEE-E
Confidence            346666666642            37998887542     789886 8999999999999999999999998766555 6


Q ss_pred             eeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccc--hhHHHHHHHHHH
Q 029277          113 GEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQH--WWMKEALDRLVM  176 (196)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~--~~~~~~l~~~~~  176 (196)
                      +.+.+...  ......++|.+..... .....+|+.+++|++++++.+++..  |....++..+++
T Consensus        97 ~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~Ev~~~~w~~~~el~~~~~~~~P~~~~al~~~~~  159 (161)
T d2fkba1          97 GQFYFEDK--NCRVWGALFSCVSHGP-FALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMK  159 (161)
T ss_dssp             EEEEEEET--TEEEEEEEEEEECCCC-CCCCTTTEEEEEEECHHHHHTTGGGBCHHHHHHHHHHHH
T ss_pred             EEEEeecC--CcEEEEEEEEEEECCC-CcCChhHeeEEEEEeHHHHhhhhhccCCcHHHHHHHHHh
Confidence            65555433  3344455565544332 2334467899999999999877532  555566655544

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=2.5e-19  Score=134.96  Aligned_cols=112  Identities=25%  Similarity=0.245  Sum_probs=72.8

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeee
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~  114 (196)
                      +.+|++|+++++             ++||+++.+.    ..|+||||++|+||++.+||+||++||||+.++...  ++.
T Consensus        24 ~~aV~vl~~~~~-------------~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~~~~--l~~   88 (158)
T d1v8ya_          24 KPAVAVIALREG-------------RMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTY--LFS   88 (158)
T ss_dssp             CCEEEEEEEETT-------------EEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEEEEE--EEE
T ss_pred             CCEEEEEEEECC-------------EEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcceeee--ecc
Confidence            346777776532             7999986443    469999999999999999999999999999886443  343


Q ss_pred             EEeeeCCCCceEEEEEEEEeeccccc-cCCcCccceeEEEeHHHHHhhccchhH
Q 029277          115 WNFKSRAHNTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWMSVAEARKVCQHWWM  167 (196)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~~~~~~~  167 (196)
                      + +..+. ......++|.+....... ...++|..++.|++++|+.+++..+.+
T Consensus        89 ~-~~~~g-~~~~~~~~f~a~~~~~~~~~~d~~E~~ev~w~~~~e~~~~i~~g~i  140 (158)
T d1v8ya_          89 Y-FVSPG-FTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRGEV  140 (158)
T ss_dssp             E-ESCTT-TBCCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHTTSC
T ss_pred             e-ecCCC-cceEEEEEEEEccccccccCCCCCeeEEEEEEEHHHHHHHHHCCCC
Confidence            3 22222 222334455554332222 223456789999999999998766543

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=9.4e-19  Score=131.00  Aligned_cols=110  Identities=15%  Similarity=0.142  Sum_probs=74.6

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcC-----CCCEEe-cCcccCCCCCHHHHHHHHHHHhhceeeeecceeee
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-----~~~W~l-PgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~  113 (196)
                      .++++++++.+            +++||.+|..     +|.|.+ |||++++|||+.+||+||+.||||+.+........
T Consensus         3 ra~~v~i~n~~------------g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~   70 (153)
T d1hzta_           3 LAFSSWLFNAK------------GQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYP   70 (153)
T ss_dssp             ECEEEEEECTT------------CCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEET
T ss_pred             eEEEEEEEECC------------CEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceec
Confidence            46777788853            2799988753     277987 99999999999999999999999999766544122


Q ss_pred             eEEeeeCCCC--c-eEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhc
Q 029277          114 EWNFKSRAHN--T-DYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVC  162 (196)
Q Consensus       114 ~~~~~~~~~~--~-~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~  162 (196)
                      .+.|......  . ....++|.+...... ....+|+.+++|++++++.+.+
T Consensus        71 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ev~~~~W~~~~el~~~i  121 (153)
T d1hzta_          71 DFRYRATDPSGIVENEVCPVFAARTTSAL-QINDDEVMDYQWCDLADVLHGI  121 (153)
T ss_dssp             TCEEEEECTTSCEEEEECCEEEEEBCSCC-CCCTTTEEEEEEECHHHHHHHH
T ss_pred             cccccccccccccceeEEEEEEEeeCCCc-cCChhheeEEEEeeHHHHHHHH
Confidence            2333322222  2 222334444433322 2233588999999999998763

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.7e-18  Score=133.65  Aligned_cols=101  Identities=18%  Similarity=0.059  Sum_probs=72.0

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEe-eccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLL-VQDQ  138 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~-~~~~  138 (196)
                      ++||+++.+.    ..|+||||++|+||++.+||+||++||||+.+..... ++.+.. .+.... ...++|.+. ....
T Consensus        60 ~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~-l~~~~~-~~g~~~-~~~~~~~a~~~~~~  136 (186)
T d1vhza_          60 HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTF-LKKLSM-APSYFS-SKMNIVVAQDLYPE  136 (186)
T ss_dssp             EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEEC-CTTTCC-CEEEEEEEEEEEEC
T ss_pred             EEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhcccccccee-cceeec-cccccc-eEEEEEEEEecccc
Confidence            6999986543    2499999999999999999999999999999988776 776532 222222 233444443 2222


Q ss_pred             cccCCcCccceeEEEeHHHHHhhccchhH
Q 029277          139 LAEWPEKNVRSRKWMSVAEARKVCQHWWM  167 (196)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~el~~~~~~~~~  167 (196)
                      .....+.|..+..|++++++.+++..+.+
T Consensus       137 ~~~~de~E~~~~~~~~~~e~~~~i~~g~i  165 (186)
T d1vhza_         137 SLEGDEPEPLPQVRWPLAHMMDLLEDPDF  165 (186)
T ss_dssp             CCCCCCSSCCCEEEEEGGGGGGGGGCTTT
T ss_pred             cCCCCCCcEEEEEEEeHHHHHHHHHcCCC
Confidence            22223457789999999999999876654

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.76  E-value=1.5e-18  Score=130.79  Aligned_cols=114  Identities=13%  Similarity=0.068  Sum_probs=78.8

Q ss_pred             ceEEEEEEEEEeeccCCcccccCCceEEEEEEEcC-----CCCEEec-CcccCCCCCHHHHHHHHHHHhhceeeeeccee
Q 029277           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (196)
Q Consensus        38 ~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~-----~~~W~lP-gG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~  111 (196)
                      .+.+|++++++.+            +++||.+|..     +|.|.+| ||+++.|||+.+||.||++||||+.+..... 
T Consensus        27 ~~~~v~~~v~~~~------------g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~-   93 (162)
T d2o5fa1          27 RVRVVNAFLRNSQ------------GQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSW-   93 (162)
T ss_dssp             GSEEEEEEEECTT------------SCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEE-
T ss_pred             eEEEEEEEEEcCC------------CCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEE-
Confidence            3457777777653            2688777643     2789887 9999999999999999999999999877655 


Q ss_pred             eeeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccch
Q 029277          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      +..+.+...........++|.+..... .....+|+.+++|++++++.+++..+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ev~~~~W~~~eel~~~~~~g  146 (162)
T d2o5fa1          94 RPLASFSPFQTTLSSFMCVYELRSDAT-PIFNPNDISGGEWLTPEHLLARIAAG  146 (162)
T ss_dssp             EEEEEECTTTSSCSSEEEEEEEECSSC-CCCCTTTCSEEEEECHHHHHHHHHHT
T ss_pred             EEEEEeccccccceEEEEEEEEecCCC-ccCChhHeeEEEEeeHHHHHHHHHCC
Confidence            444444333333334445666554432 22334578999999999998886433

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.75  E-value=2.5e-18  Score=132.78  Aligned_cols=112  Identities=21%  Similarity=0.151  Sum_probs=78.1

Q ss_pred             CceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeeccee
Q 029277           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~-----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~  111 (196)
                      ..|.++..|++..+          ++.+|||++|...     |.|.||||++|.||++.+||+||++||||+....... 
T Consensus        29 ~~r~aaVlv~~~~~----------~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~-   97 (187)
T d1nqza_          29 HYRRAAVLVALTRE----------ADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTL-   97 (187)
T ss_dssp             -CEEEEEEEEEESS----------SSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEE-
T ss_pred             CCCccEEEEEEEEC----------CCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEE-
Confidence            45666666666543          4457999988643     8899999999999999999999999999999887776 


Q ss_pred             eeeEEeeeCCCCceEEEEEEEEeeccc--cccCCcCccceeEEEeHHHHHhh
Q 029277          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQ--LAEWPEKNVRSRKWMSVAEARKV  161 (196)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~  161 (196)
                      ++.+...... .+ ..++.|.+.+...  ......+|+.++.|++++++...
T Consensus        98 lg~l~~~~~~-~~-~~V~p~v~~l~~~~~~~~~~~~EV~~v~~vpl~~L~~~  147 (187)
T d1nqza_          98 LGELDDVFTP-VG-FHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAV  147 (187)
T ss_dssp             EEECCCEEET-TT-EEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHS
T ss_pred             eecccceeec-cc-cEEEEEEEEECCccccccccCCcceEEEeccHHHHhcC
Confidence            7765433322 22 3344444444322  22234467899999999999765

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=1.1e-17  Score=130.55  Aligned_cols=125  Identities=15%  Similarity=0.073  Sum_probs=75.7

Q ss_pred             cccccccccCCCceEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC--C--CEEecCcccC-CCCCHHHHHHHHHHHh
Q 029277           26 RTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--K--GMLFPKGGWE-IDESIQEAALRETIEE  100 (196)
Q Consensus        26 ~~g~~~~~~~~~~r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~--~--~W~lPgG~ve-~gEs~~~Aa~REl~EE  100 (196)
                      ..|....++-.....+|++++++.            +++|||+++.+.  +  .|+||+|++| +||++++||+||++||
T Consensus        25 pdG~~~~~~~v~~~~~V~vl~~~~------------~~~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EE   92 (202)
T d1mqea_          25 PGGGIVTREVVEHFGAVAIVAMDD------------NGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREE   92 (202)
T ss_dssp             ----CEEEEEEEECCEEEEEECCT------------TSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEEEcCCeEEEEEECC------------CCEEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhc
Confidence            345444433222233555566554            238999987443  2  5999999999 7999999999999999


Q ss_pred             hceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecc--ccc-cCCcCccceeEEEeHHHHHhhccch
Q 029277          101 AGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD--QLA-EWPEKNVRSRKWMSVAEARKVCQHW  165 (196)
Q Consensus       101 tGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~--~~~-~~~~~e~~~~~W~~~~el~~~~~~~  165 (196)
                      ||+.+..... ++.+.. .+ .......++|.+....  ... ...+++..++.|++++|+.+++..+
T Consensus        93 TG~~~~~~~~-l~~~~~-~~-g~~~~~~~~fla~~~~~~~~~~~~~eee~i~v~w~~~~e~~~~i~~G  157 (202)
T d1mqea_          93 VGLQASTWQV-LVDLDT-AP-GFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRG  157 (202)
T ss_dssp             HCEEEEEEEE-EEEECS-CT-TTBCCCEEEEEEEEEEECCC----------CEEEEEHHHHHHHHTTT
T ss_pred             cccccccceE-eeeeec-cC-ccCCcEEEEEEEEeccccCCCCCCCccceEEEEEEEHHHHHHHHHcC
Confidence            9999988776 666432 22 2222334455444221  112 2223345689999999999997654

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.4e-17  Score=133.12  Aligned_cols=141  Identities=15%  Similarity=0.053  Sum_probs=94.5

Q ss_pred             CceEEEEEEEEEeeccCCcc-ccc--CC--ceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHhhceeeeeccee
Q 029277           37 GRRQVVGCIPYRYKCVKQSL-DIN--EE--DLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (196)
Q Consensus        37 ~~r~~vgaii~~~~~~~~g~-~~~--~~--~~~vLLv~~~~~~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~  111 (196)
                      ++..+|..||-+...+.+|. +..  ++  -.+||||+|+..|.|.||||+||+||++.+||+||+.||||+.+......
T Consensus       108 GpNhAadpivTR~~r~~~g~~~~~~~~g~~~LqvLlIkR~d~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~  187 (292)
T d1q33a_         108 GPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAE  187 (292)
T ss_dssp             EEEEEEEEEEEEECBCTTSCBCBCTTTCSBCEEEEEEECTTTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSH
T ss_pred             CccccccEEEecccccCCCCeEEecCCCCceeEEEEEEecCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCccccccccc
Confidence            78899999998865443332 221  12  36899999988899999999999999999999999999999986532210


Q ss_pred             ----------------eeeEEeeeCC----CCceEEEEEEEEeeccc-----cccCCcCccceeEEEeHHHHHhhccchh
Q 029277          112 ----------------LGEWNFKSRA----HNTDYQGYMFPLLVQDQ-----LAEWPEKNVRSRKWMSVAEARKVCQHWW  166 (196)
Q Consensus       112 ----------------l~~~~~~~~~----~~~~~~~~~f~~~~~~~-----~~~~~~~e~~~~~W~~~~el~~~~~~~~  166 (196)
                                      ...+.....+    ........+|.+.....     ....+.+|..+++|++++++..+.  .+
T Consensus       188 ~~~~~~~l~~l~~~~~~~~y~gyvddprntd~aw~etva~~~h~~~~~~~~~~~l~~~dEa~~v~W~~vde~~~L~--~~  265 (292)
T d1q33a_         188 KREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLY--AS  265 (292)
T ss_dssp             HHHHHHHHHHHTTTSEEEEEEEECCCTTCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCCS--TT
T ss_pred             ccccccceeeeccccccccccccccccCCCCCCEEEEEEEEEEEcccccccccccCCCCchheEEEEEhhccccch--hh
Confidence                            0111111111    12233344555544332     122345678999999999988764  44


Q ss_pred             HHHHHHHHHHHHh
Q 029277          167 MKEALDRLVMRLT  179 (196)
Q Consensus       167 ~~~~l~~~~~~l~  179 (196)
                      +.++|+++.+.+.
T Consensus       266 H~~il~~aa~~~~  278 (292)
T d1q33a_         266 HSQFIKLVAEKRD  278 (292)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            5778887777664

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=8.9e-17  Score=125.97  Aligned_cols=113  Identities=20%  Similarity=0.102  Sum_probs=78.8

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcCCC---------CEEecCcccCCCCCHHHHHHHHHHHhhceeeeecce
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGK---------GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE  110 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~~---------~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~  110 (196)
                      .+|++|++..+           .++++|+++.+.+         .|++|+|.+|+||++++||+||+.||||+.+.....
T Consensus        58 ~~v~vl~~~~~-----------~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~  126 (209)
T d1g0sa_          58 HAAVLLPFDPV-----------RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKP  126 (209)
T ss_dssp             CEEEEEEEETT-----------TTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEE
T ss_pred             CEEEEEEEEec-----------CCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceee
Confidence            45666666642           3479999875531         489999999999999999999999999999877766


Q ss_pred             eeeeEEeeeCCCCceEEEEEEEEeeccccc-----cCCcCccceeEEEeHHHHHhhccchh
Q 029277          111 LLGEWNFKSRAHNTDYQGYMFPLLVQDQLA-----EWPEKNVRSRKWMSVAEARKVCQHWW  166 (196)
Q Consensus       111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~-----~~~~~e~~~~~W~~~~el~~~~~~~~  166 (196)
                       ++.+ +..+ +......++|.+.......     ...++|..++.|++++|+.+++....
T Consensus       127 -l~~~-~~sp-g~~~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~~i~~g~  184 (209)
T d1g0sa_         127 -VLSF-LASP-GGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGK  184 (209)
T ss_dssp             -EEEE-ESCT-TTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTTS
T ss_pred             -cccc-ccCC-cccCCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHHHHHcCC
Confidence             6654 3222 2334456677766443211     11234567899999999999876653

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.65  E-value=1.8e-15  Score=109.28  Aligned_cols=104  Identities=11%  Similarity=-0.012  Sum_probs=74.6

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeeecceeeeeEEeeeCCCCceEEEEEEEEeecccc
Q 029277           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (196)
Q Consensus        64 ~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (196)
                      ++||.+|..+    |.|+||||.++.+|+ .+++.||+.||+|+.+..... ++.+.+.++.  ......+|.+......
T Consensus        17 ~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~-l~~~~H~fsh--~~~~~~~~~~~~~~~~   92 (127)
T d1rrqa2          17 RVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEP-IVSFEHAFSH--LVWQLTVFPGRLVHGG   92 (127)
T ss_dssp             EEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSC-CEEEEEECSS--EEEEEEEEEEEEECCS
T ss_pred             EEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEeccc-cccceEecCC--eEEEEEEEEEEECCCC
Confidence            7988887654    679999999997777 789999999999999998877 7777766552  2234456666554322


Q ss_pred             ccCCcCccceeEEEeHHHHHhhccchhHHHHHHHHHH
Q 029277          140 AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  176 (196)
Q Consensus       140 ~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  176 (196)
                           .+..+++|++++++.++.....++.+++.+.+
T Consensus        93 -----~~~~~~~Wv~~~el~~~~~p~~~~Ki~~~~~~  124 (127)
T d1rrqa2          93 -----PVEEPYRLAPEDELKAYAFPVSHQRVWREYKE  124 (127)
T ss_dssp             -----CCCTTEEEEEGGGGGGSCCCHHHHHHHHHHHH
T ss_pred             -----ccccceEEeeHHHHhHCCCChHHHHHHHHHHH
Confidence                 12357899999999998887778888776654

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.55  E-value=1.5e-14  Score=111.86  Aligned_cols=119  Identities=14%  Similarity=0.040  Sum_probs=77.4

Q ss_pred             CCceEEEEEEEEEeeccCCccc---ccCCceEEEEEEEcCCCCEEecCcccCCCCC-HHHHHHHHHHHhhceeeeeccee
Q 029277           36 KGRRQVVGCIPYRYKCVKQSLD---INEEDLEVLVISSQKGKGMLFPKGGWEIDES-IQEAALRETIEEAGVTGIVECEL  111 (196)
Q Consensus        36 ~~~r~~vgaii~~~~~~~~g~~---~~~~~~~vLLv~~~~~~~W~lPgG~ve~gEs-~~~Aa~REl~EEtGl~~~~~~~~  111 (196)
                      .++|.+|.++++..+   .+++   +. .+..|||.+| .+|.|.||||+++.||+ +++||.||+.||||+.+....+ 
T Consensus        17 ~g~r~a~~~~~~~~~---~~~~~~~~~-~~~~vl~~~r-~~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l-   90 (196)
T d1u20a1          17 EGYKHACHALLHAPS---QAKLFDRVP-IRRVLLMMMR-FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEV-   90 (196)
T ss_dssp             SSCEEEEEEEEEEEC---CCEETTTEE-CCEEEEEEEE-TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCC-
T ss_pred             CCcceEEEEEEEcCC---CceEEEEec-CCcEEEEEEe-cCCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEEE-
Confidence            378999999999876   3322   12 2345666554 56899999999999996 6889999999999999876543 


Q ss_pred             ee--eEEeeeCCCCceEEEEEEEEeeccc----------cccCCcCccceeEEEeHHHHHh
Q 029277          112 LG--EWNFKSRAHNTDYQGYMFPLLVQDQ----------LAEWPEKNVRSRKWMSVAEARK  160 (196)
Q Consensus       112 l~--~~~~~~~~~~~~~~~~~f~~~~~~~----------~~~~~~~e~~~~~W~~~~el~~  160 (196)
                      +.  .+.............++|.......          .......|..++.|+++.++.+
T Consensus        91 ~~~~~~~~~~~~~~~~~v~~fy~~~~~~~~l~~~e~~~~~a~~~~~E~~~~~wVPl~~L~d  151 (196)
T d1u20a1          91 TEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD  151 (196)
T ss_dssp             CGGGEEEEEEECTTSCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             EeeEEEEeccCCCCCEEEEEEEEEEcchHHhhhhhhcccccCcCCccccceeEEeHHHhcc
Confidence            22  2222222223334455666554321          1111224678999999888754

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1.6e-14  Score=111.28  Aligned_cols=113  Identities=15%  Similarity=0.018  Sum_probs=76.5

Q ss_pred             EEEEEEEEEeeccCCcccccCCceEEEEEEEcCC--------C--CEEecCcccCCCCCHHHHHHHHHHHhhceeeeecc
Q 029277           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--------K--GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC  109 (196)
Q Consensus        40 ~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~--------~--~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~~~  109 (196)
                      .+|++|+++..           ++++||+++.+.        +  .|++|||.++ ||++++||+||+.||||+.+....
T Consensus        44 ~aV~Vl~~~~~-----------~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~  111 (189)
T d1viua_          44 NGATILLYNTK-----------KKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVR  111 (189)
T ss_dssp             CEEEEEEEETT-----------TTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCE
T ss_pred             CEEEEEEEEcC-----------CCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEE
Confidence            36667776642           347999987542        2  3677888887 677899999999999999988777


Q ss_pred             eeeeeEEeeeCCCCceEEEEEEEEeeccccc----cCCcCccceeEEEeHHHHHhhccchhH
Q 029277          110 ELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA----EWPEKNVRSRKWMSVAEARKVCQHWWM  167 (196)
Q Consensus       110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~e~~~~~W~~~~el~~~~~~~~~  167 (196)
                      . ++.+ +..+. ......++|.+.......    ...++|..++.|++++|+.+++..+.+
T Consensus       112 ~-lg~~-~~spG-~~~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~i~~g~i  170 (189)
T d1viua_         112 K-LFEL-YMSPG-GVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEI  170 (189)
T ss_dssp             E-EEEE-ESCTT-TBCCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHHHHHTSC
T ss_pred             E-ccee-ecCcc-ccCceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHHHHcCCC
Confidence            6 7765 33332 333456677776543211    112346689999999999999766544

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7.1e-12  Score=91.26  Aligned_cols=122  Identities=16%  Similarity=0.180  Sum_probs=81.8

Q ss_pred             eEEEEEEEEEeeccCCcccccCCceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHhhceeeee--cceee
Q 029277           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECELL  112 (196)
Q Consensus        39 r~~vgaii~~~~~~~~g~~~~~~~~~vLLv~~~~~----~~W~lPgG~ve~gEs~~~Aa~REl~EEtGl~~~~--~~~~l  112 (196)
                      +..+.+|+.+..   .      .+++|||.+|..+    |.|+||+|.++.||+..++|.||..+|.+..+..  ... +
T Consensus        12 ~~~~~~vv~~~~---~------~~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~-~   81 (142)
T d1x51a1          12 ESSATCVLEQPG---A------LGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRH-L   81 (142)
T ss_dssp             EEEEEEEEEEEC---S------SSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEE-C
T ss_pred             EEEEEEEEEecC---C------CCCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeee-e
Confidence            445555555543   1      2458999998664    6899999999999999988887776666655433  233 4


Q ss_pred             eeEEeeeCCCCceEEEEEEEEeeccccccCCcCccceeEEEeHHHHHhhccchhHHHHHHHH
Q 029277          113 GEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL  174 (196)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~  174 (196)
                      +.+.+.++  ......++|.+........  ..+..+.+|++++++.++.....++.+++.+
T Consensus        82 ~~v~H~fs--H~~~~~~v~~~~~~~~~~~--~~~~~~~~W~~~~el~~~~lp~~~~Kil~~~  139 (142)
T d1x51a1          82 GEVVHTFS--HIKLTYQVYGLALEGQTPV--TTVPPGARWLTQEEFHTAAVSTAMKKVFRVY  139 (142)
T ss_dssp             CCBCCBCS--SCEEEEEEEEEECSSCCCC--CCCCTTEEEEEHHHHHHSCCCHHHHHHHHHH
T ss_pred             ccceeccC--CcceEEEEEEEEEeCCCcc--cccCccCEEeeHHHccccCCCHHHHHHHHHH
Confidence            54444433  2334456777766543322  2355789999999999987777777776654