Citrus Sinensis ID: 029297

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MADGYWNRQQASLLPSGGMLKRPRSDYDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTSTIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPDLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLLNL
Secondary Structure (PSIPRED)
cccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHcccccccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHccccccEEEEEEccccccccc
Coil and Loop (DISEMBL)
madgywnrqqasllpsggmlkrprsdydlppsevlsrhdmhnylsqdddlgelqplkdtstigsAYDRYLQsaqyssftsgeasafsgdrlrravpggvtrlpvsdpsvtgrhgatgpdlvqnlrsssiddqlpfdaaarpghetlplppdasstlyveglpadstkrevahifrpfvgyKEVRLVIKESKLLNL
Flexible Loop (DISEMBL)
madgywnrqqasllpsggmlkrpRSDYDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTSTIGSAYDRYLQSAQYSSftsgeasafsgdRLRRAVPggvtrlpvsdpsvtgrhgatgpdLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHifrpfvgykevrlvikeskllnl
Low Complexity Region (SEG)
MADGYWNRQQASLLPSGGMLKRPRSDYDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTSTIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPDLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLLNL
Disordered region (IsUnstruct)
************************************************************************************************************************************************************YVE******TKREVAHIFRPFVGYKEVRLVIK*******
Disordered Region (DISOPRED)
*ADGYWN********************************************************SAYDRYL************************************************************************************TLYVEGLPADSTKREVAHIFRPFVGYKEVRLV*********
Disordered Region (DISEMBL)
********QQASLLPSGGMLKRPRSDYDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTSTIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPDLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLLNL
Disordered Region (DISPRO)
************L*PSGGMLKRPRSDYDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTSTIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPDLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADGYWNRQQASLLPSGGMLKRPRSDYDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTSTIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPDLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLLNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
356576041	252	PREDICTED: uncharacterized protein LOC10	0.969	0.75	0.614	9e-56
388500704	252	unknown [Medicago truncatula]	0.943	0.730	0.596	2e-54
357443729	252	RNA-binding protein with multiple splici	0.943	0.730	0.596	4e-54
449462154	257	PREDICTED: uncharacterized protein LOC10	0.953	0.723	0.595	3e-53
388513795	239	unknown [Lotus japonicus]	0.907	0.740	0.612	4e-53
255645608	242	unknown [Glycine max]	0.923	0.743	0.633	6e-53
449506960	257	PREDICTED: uncharacterized LOC101222348	0.953	0.723	0.59	8e-53
356576043	244	PREDICTED: uncharacterized protein LOC10	0.928	0.741	0.598	2e-52
356535808	251	PREDICTED: uncharacterized protein LOC10	0.964	0.749	0.625	4e-51
255637493	251	unknown [Glycine max]	0.964	0.749	0.614	1e-49

>gi|356576041|ref|XP_003556143.1| PREDICTED: uncharacterized protein LOC100812551 isoform 1 [Glycine max]

 Score =  221 bits (564), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 143/192 (74%), Gaps = 3/192 (1%)

Query: 1   MADGYWNRQQASLLPSGGMLKRPRSDYDLPPSEVLSR-HDMHNYLSQDDDLGELQPLKDT 59
           M DG WNRQQ   LPS  MLKRPR++YD+ PS + S  ++MHNY+ ++DD    + LKDT
Sbjct: 1   MTDGSWNRQQQPFLPSSAMLKRPRTEYDISPSGLTSGGNEMHNYIGRNDDHTGHRILKDT 60

Query: 60  STIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPD 119
            T+GSA+DRYLQSA  +SF SGEASA     L R V GG+ R  ++DP+V G H   G D
Sbjct: 61  KTLGSAFDRYLQSAGLTSFNSGEASAIGSVGLERGV-GGLPRHSLTDPAVMG-HPGGGHD 118

Query: 120 LVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVG 179
           L +  R+ +  DQLP DAA+ PG ET+PLPPDASSTLYVEGLP+DST+REVAHIFRPFVG
Sbjct: 119 LARGGRNVNYGDQLPVDAASMPGPETVPLPPDASSTLYVEGLPSDSTRREVAHIFRPFVG 178

Query: 180 YKEVRLVIKESK 191
           Y+EVRLV KESK
Sbjct: 179 YREVRLVSKESK 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500704|gb|AFK38418.1| unknown [Medicago truncatula]

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 138/196 (70%), Gaps = 12/196 (6%)

Query: 1   MADGYWNRQQASLLPSGGMLKRPRSDYDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTS 60
           MADG+WNRQQ  L P GGMLKRPR++YD  PS V S +++HNY++Q++     Q L DT 
Sbjct: 1   MADGFWNRQQQHLPPPGGMLKRPRTEYDTAPSGVTSGNEVHNYIAQNNGH---QMLNDTK 57

Query: 61  TIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLP---VSDPSVTGRHGATG 117
            +GSAYDR+LQSA  +SF SGEAS   G    R    GV  LP   + DPS  G     G
Sbjct: 58  ILGSAYDRFLQSAGLTSFNSGEASVIGGVGFAR----GVGELPGHSLGDPSAMGHLSGVG 113

Query: 118 --PDLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFR 175
             PDL +N R ++   QLP DA +RPG ET+PLP DASSTLYVEGLP+DSTKREVAHIFR
Sbjct: 114 GGPDLSRNGRDANFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHIFR 173

Query: 176 PFVGYKEVRLVIKESK 191
           PFVGY+EVRLV KESK
Sbjct: 174 PFVGYREVRLVAKESK 189

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443729|ref|XP_003592142.1| RNA-binding protein with multiple splicing [Medicago truncatula] gi|355481190|gb|AES62393.1| RNA-binding protein with multiple splicing [Medicago truncatula]

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 137/196 (69%), Gaps = 12/196 (6%)

Query: 1   MADGYWNRQQASLLPSGGMLKRPRSDYDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTS 60
           MADG+WNRQQ  L P GGMLKRPR++YD  PS V S +++HNY++Q++     Q L DT 
Sbjct: 1   MADGFWNRQQQHLPPPGGMLKRPRTEYDTAPSGVTSGNEVHNYIAQNNGH---QMLNDTK 57

Query: 61  TIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLP---VSDPSVTGRHGATG 117
            +GSAYDR+LQSA  +SF SGEAS   G    R    GV  LP   + DPS  G     G
Sbjct: 58  ILGSAYDRFLQSAGLTSFNSGEASVIGGVGFAR----GVGELPGHSLGDPSAMGHLSGVG 113

Query: 118 --PDLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFR 175
             PDL +N R  +   QLP DA +RPG ET+PLP DASSTLYVEGLP+DSTKREVAHIFR
Sbjct: 114 GGPDLSRNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHIFR 173

Query: 176 PFVGYKEVRLVIKESK 191
           PFVGY+EVRLV KESK
Sbjct: 174 PFVGYREVRLVAKESK 189

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462154|ref|XP_004148806.1| PREDICTED: uncharacterized protein LOC101222348 isoform 1 [Cucumis sativus] gi|449462156|ref|XP_004148807.1| PREDICTED: uncharacterized protein LOC101222348 isoform 2 [Cucumis sativus]

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 119/200 (59%), Positives = 137/200 (68%), Gaps = 14/200 (7%)

Query: 1   MADGYWNRQQASLLPSGGMLKRPRSDYDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTS 60
           MAD YWNRQQ  LLPS  MLKRPR+DY+LP S + + HDMHNYL+ DD  G  + +KDT 
Sbjct: 1   MADDYWNRQQP-LLPSPAMLKRPRTDYELPASGLSTGHDMHNYLTSDDRGGP-RSVKDTQ 58

Query: 61  TIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVS---------DPSVTG 111
           TIGSAYDRYLQS Q SSFTSGE        + R V     R+PV          DP V  
Sbjct: 59  TIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPV---ANRMPVGNRMPGPLLPDPIVMS 115

Query: 112 RHGATGPDLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVA 171
           R  A  PDL  N R+    + LP D+ +RPG ET+PLPPDAS+TLYVEGLP DS++REVA
Sbjct: 116 RPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVA 175

Query: 172 HIFRPFVGYKEVRLVIKESK 191
           HIFRPFVGYKE+RLV KESK
Sbjct: 176 HIFRPFVGYKELRLVSKESK 195

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513795|gb|AFK44959.1| unknown [Lotus japonicus]

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 109/178 (61%), Positives = 132/178 (74%), Gaps = 1/178 (0%)

Query: 14  LPSGGMLKRPRSDYDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTSTIGSAYDRYLQSA 73
           +P  GMLKRPRSDYD+P S + S +D++NY+ +DDD    + L+DT TIGS YDRYLQS 
Sbjct: 1   MPHSGMLKRPRSDYDMPASGLSSGNDINNYIVRDDDRTGPRMLRDTKTIGSTYDRYLQSG 60

Query: 74  QYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPDLVQNLRSSSIDDQL 133
           Q S++TSGEAS   G    R  PGG+    ++D +  GRHG  GPD+  N R  +   Q 
Sbjct: 61  QLSAYTSGEASTIGGLGYARG-PGGLPGHSLADHAAMGRHGGGGPDIAPNGRGFNYGGQP 119

Query: 134 PFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK 191
           P D+ +RPGHET+PLPPDASSTLYVEGLP+DSTKREVAHIFRPFVGY+EVRLV KESK
Sbjct: 120 PVDSVSRPGHETVPLPPDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVTKESK 177

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645608|gb|ACU23298.1| unknown [Glycine max]

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 121/191 (63%), Positives = 137/191 (71%), Gaps = 11/191 (5%)

Query: 1   MADGYWNRQQASLLPSGGMLKRPRSDYDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTS 60
           M DGYWNRQQ +LL   GMLKRPRSDY          ++MHN  ++DDD    + LKDT 
Sbjct: 1   MTDGYWNRQQ-TLLSQSGMLKRPRSDYG---------NEMHNNFARDDDRTGHRMLKDTK 50

Query: 61  TIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPDL 120
           TIGSAYDRYLQS Q SSFTSGEAS   G  L R   G ++   ++DPSV GRHG  GPDL
Sbjct: 51  TIGSAYDRYLQSGQLSSFTSGEASTVGGLGLARGGGG-LSDHSLADPSVMGRHGGGGPDL 109

Query: 121 VQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGY 180
             N R  +   QLP DA +RPG ET+ LPPDASSTLYVEGLP+DST+REVAHIFRPFVGY
Sbjct: 110 APNGRGVNYGGQLPVDAVSRPGPETVSLPPDASSTLYVEGLPSDSTRREVAHIFRPFVGY 169

Query: 181 KEVRLVIKESK 191
           +EVRLV KESK
Sbjct: 170 REVRLVSKESK 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506960|ref|XP_004162895.1| PREDICTED: uncharacterized LOC101222348 isoform 1 [Cucumis sativus] gi|449506964|ref|XP_004162896.1| PREDICTED: uncharacterized LOC101222348 isoform 2 [Cucumis sativus]

 Score =  211 bits (538), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 118/200 (59%), Positives = 136/200 (68%), Gaps = 14/200 (7%)

Query: 1   MADGYWNRQQASLLPSGGMLKRPRSDYDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTS 60
           MAD YWNRQQ  LLPS  MLKRPR+DY+LP S + + HDMHNYL+ DD  G  + +KDT 
Sbjct: 1   MADDYWNRQQP-LLPSPAMLKRPRTDYELPASGLSTGHDMHNYLTSDDRGGP-RSVKDTQ 58

Query: 61  TIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVS---------DPSVTG 111
           TIGSAYDRYLQS Q SSFTSGE        + R V     R+PV          DP V  
Sbjct: 59  TIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPV---ANRMPVRNRMPGPLLPDPIVMS 115

Query: 112 RHGATGPDLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVA 171
           R  A  PDL  N R+    + LP D+ +RPG ET+PLPPDAS+TLYVEGLP DS++REVA
Sbjct: 116 RPPAVSPDLAPNGRNLEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVA 175

Query: 172 HIFRPFVGYKEVRLVIKESK 191
           HIFRPFVGYKE+R V KESK
Sbjct: 176 HIFRPFVGYKELRFVSKESK 195

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576043|ref|XP_003556144.1| PREDICTED: uncharacterized protein LOC100812551 isoform 2 [Glycine max]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 138/192 (71%), Gaps = 11/192 (5%)

Query: 1   MADGYWNRQQASLLPSGGMLKRPRSDYDLPPSEVLSRHDMHNYLSQDDDLGELQPLKDTS 60
           M DG WNRQQ   LPS  MLKRPR++Y          ++MHNY+ ++DD    + LKDT 
Sbjct: 1   MTDGSWNRQQQPFLPSSAMLKRPRTEY--------GGNEMHNYIGRNDDHTGHRILKDTK 52

Query: 61  TIGSAYDRYLQSA-QYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPD 119
           T+GSA+DRYLQSA Q +SF SGEASA     L R V GG+ R  ++DP+V G H   G D
Sbjct: 53  TLGSAFDRYLQSAGQLTSFNSGEASAIGSVGLERGV-GGLPRHSLTDPAVMG-HPGGGHD 110

Query: 120 LVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVG 179
           L +  R+ +  DQLP DAA+ PG ET+PLPPDASSTLYVEGLP+DST+REVAHIFRPFVG
Sbjct: 111 LARGGRNVNYGDQLPVDAASMPGPETVPLPPDASSTLYVEGLPSDSTRREVAHIFRPFVG 170

Query: 180 YKEVRLVIKESK 191
           Y+EVRLV KESK
Sbjct: 171 YREVRLVSKESK 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535808|ref|XP_003536435.1| PREDICTED: uncharacterized protein LOC100816230 isoform 1 [Glycine max]

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 144/192 (75%), Gaps = 4/192 (2%)

Query: 1   MADGYWNRQQASLLPSGGMLKRPRSDYDLPPSEVLSR-HDMHNYLSQDDDLGELQPLKDT 59
           M DG WNRQQ S LP   MLKRPR++YD+ PS + S  ++MHNY++++DD    + LKDT
Sbjct: 1   MTDGSWNRQQ-SFLPPSAMLKRPRTEYDMSPSGLTSGGNEMHNYIARNDDHTGHRILKDT 59

Query: 60  STIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPD 119
            T+GSAYDRYLQSA  +SF SGEASA S   L R V GG+    ++DP+VTG H   G D
Sbjct: 60  KTLGSAYDRYLQSAGLTSFNSGEASAISSVGLGRGV-GGLPHHSLTDPAVTG-HPGGGHD 117

Query: 120 LVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVG 179
           L +N R+ +   QLP DAA+ PG ETLPLPPDASSTLYVEGLP+ ST+REVAHIFRPFVG
Sbjct: 118 LSRNGRNVNYASQLPVDAASMPGPETLPLPPDASSTLYVEGLPSGSTRREVAHIFRPFVG 177

Query: 180 YKEVRLVIKESK 191
           Y+EVRLV KESK
Sbjct: 178 YREVRLVSKESK 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637493|gb|ACU19073.1| unknown [Glycine max]

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 144/192 (75%), Gaps = 4/192 (2%)

Query: 1   MADGYWNRQQASLLPSGGMLKRPRSDYDLPPSEVLSR-HDMHNYLSQDDDLGELQPLKDT 59
           M DG+WNRQQ  L PS  MLKRPR++YD+ PS + S  ++MHNY++++DD    + LKDT
Sbjct: 1   MTDGFWNRQQP-LHPSSTMLKRPRTEYDMSPSGLTSGGNEMHNYIARNDDHTGHRMLKDT 59

Query: 60  STIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATGPD 119
            TIGSAYDRYLQSA+ +SF SGEASA  G  L R   GG+    ++DP+V G H   G D
Sbjct: 60  KTIGSAYDRYLQSARLTSFNSGEASAVGGVGLGRGA-GGLPHHSLTDPAVMG-HPGGGHD 117

Query: 120 LVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVG 179
             +N R+ +   QLP DAA+ PG ET+PLPPDASSTLYVEGLP+DST+REVAHIFRPFVG
Sbjct: 118 HARNGRNVNYGGQLPLDAASMPGPETVPLPPDASSTLYVEGLPSDSTRREVAHIFRPFVG 177

Query: 180 YKEVRLVIKESK 191
           Y+EVRLV KESK
Sbjct: 178 YREVRLVSKESK 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2014937	421	AT1G21320 [Arabidopsis thalian	0.764	0.353	0.506	6e-32
TAIR|locus:2025232	233	AT1G76940 [Arabidopsis thalian	0.635	0.532	0.474	1.7e-20

TAIR|locus:2014937 AT1G21320 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 78/154 (50%), Positives = 98/154 (63%)

Query:    39 DMHNYLSQDDDLGELQPLKDTSTIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGG 98
             DMH+YLSQD+D G    +KDT +IGSAYDRYLQS Q     S EA  F+G  + R   GG
Sbjct:   211 DMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQ--GG 268

Query:    99 VTRLPVSDPSVTGRHGATGPDLVQNLRSSSIDDQL-PFDAAARPGHETLPLPPDASSTLY 157
                +P   PS+       G  L  + R +  D      D+  RPG E  PLPPD S+TLY
Sbjct:   269 SNMMP--GPSMGELMAGCGGSLPSDFRPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLY 326

Query:   158 VEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK 191
             VEGLP++ ++REV+HIFRPFVGY+EVRLV ++SK
Sbjct:   327 VEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSK 360

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2025232 AT1G76940 [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 65/137 (47%), Positives = 76/137 (55%)

Query:    58 DTSTIGSAYDRYLQSAQYSSFTSGEASAFSGDRLRRAVPGGVTRLPVSDPSVTGRHGATG 117
             DT TIGSAYDRYLQS Q     SGE  + S  R      GG   +   D  +  R G   
Sbjct:    53 DTRTIGSAYDRYLQSVQ-----SGEGGSVSMGRSGGGGGGGGGNVQTIDDFMLRRGGVLP 107

Query:   118 PDLVQNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPF 177
              D   N  +   D   P       G   LP   DAS+TLYVEGLP++ ++REVAHIFRPF
Sbjct:   108 LDHGPNGHTIGFDPPEPV------GRRNLP--SDASNTLYVEGLPSNCSRREVAHIFRPF 159

Query:   178 VGYKEVRLVIKESKLLN 194
             VGY+EVRLV K+SK  N
Sbjct:   160 VGYREVRLVTKDSKHRN 176

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.II.3487.1 hypothetical protein (243 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
cd12420	79	cd12420, RRM_RBPMS_like, RNA recognition motif in	1e-14
cd12247	72	cd12247, RRM2_U1A_like, RNA recognition motif 2 in	1e-05
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	0.002
smart00360	73	smart00360, RRM, RNA recognition motif	0.004
cd12683	76	cd12683, RRM_RBPMS2, RNA recognition motif in vert	0.004

>gnl|CDD|240866 cd12420, RRM_RBPMS_like, RNA recognition motif in RNA-binding protein with multiple splicing (RBP-MS)-like proteins

 Score = 65.8 bits (161), Expect = 1e-14
 Identities = 23/38 (60%), Positives = 29/38 (76%)

Query: 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK 191
            TL+V GLP+D  +RE+AH+FRPF GY+  RLV KE K
Sbjct: 1   RTLFVSGLPSDVKERELAHLFRPFPGYEASRLVFKEKK 38

This subfamily corresponds to the RRM of RNA-binding proteins with multiple splicing (RBP-MS)-like proteins, including protein products of RBPMS genes (RBP-MS and its paralogue RBP-MS2), the Drosophila couch potato (cpo), and Caenorhabditis elegans Mec-8 genes. RBP-MS may be involved in regulation of mRNA translation and localization during Xenopus laevis development. It has also been shown to physically interact with Smad2, Smad3 and Smad4, and stimulates Smad-mediated transactivation. Cpo may play an important role in regulating normal function of the nervous system, whereas mutations in Mec-8 affect mechanosensory and chemosensory neuronal function. All members contain a well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Some uncharacterized family members contain two RRMs; this subfamily includes their RRM1. Their RRM2 shows high sequence homology to the RRM of yeast proteins scw1, Whi3, and Whi4. Length = 79

>gnl|CDD|240693 cd12247, RRM2_U1A_like, RNA recognition motif 2 in the U1A/U2B"/SNF protein family

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186
           +  L+++ LP ++TK  +  +F  F G+KEVRLV
Sbjct: 2   NKILFLQNLPEETTKEMLEMLFNQFPGFKEVRLV 35

This subfamily corresponds to the RRM2 of U1A/U2B"/SNF protein family, containing Drosophila sex determination protein SNF and its two mammalian counterparts, U1 small nuclear ribonucleoprotein A (U1 snRNP A or U1-A or U1A) and U2 small nuclear ribonucleoprotein B" (U2 snRNP B" or U2B"), all of which consist of two RNA recognition motifs (RRMs) connected by a variable, flexible linker. SNF is an RNA-binding protein found in the U1 and U2 snRNPs of Drosophila where it is essential in sex determination and possesses a novel dual RNA binding specificity. SNF binds with high affinity to both Drosophila U1 snRNA stem-loop II (SLII) and U2 snRNA stem-loop IV (SLIV). It can also bind to poly(U) RNA tracts flanking the alternatively spliced Sex-lethal (Sxl) exon, as does Drosophila Sex-lethal protein (SXL). U1A is an RNA-binding protein associated with the U1 snRNP, a small RNA-protein complex involved in pre-mRNA splicing. U1A binds with high affinity and specificity to stem-loop II (SLII) of U1 snRNA. It is predominantly a nuclear protein that shuttles between the nucleus and the cytoplasm independently of interactions with U1 snRNA. Moreover, U1A may be involved in RNA 3'-end processing, specifically cleavage, splicing and polyadenylation, through interacting with a large number of non-snRNP proteins. U2B", initially identified to bind to stem-loop IV (SLIV) at the 3' end of U2 snRNA, is a unique protein that comprises of the U2 snRNP. Additional research indicates U2B" binds to U1 snRNA stem-loop II (SLII) as well and shows no preference for SLIV or SLII on the basis of binding affinity. U2B" does not require an auxiliary protein for binding to RNA and its nuclear transport is independent on U2 snRNA binding. . Length = 72

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186
           L+V  LP D+T+ ++  +F  F   + VR+V
Sbjct: 1   LFVGNLPPDTTEEDLRELFSKFGEIESVRIV 31

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189
           TL+V  LP D+T+ E+  +F  F   + VRLV  +
Sbjct: 1   TLFVGNLPPDTTEEELRELFSKFGKVESVRLVRDK 35

Length = 73

>gnl|CDD|241127 cd12683, RRM_RBPMS2, RNA recognition motif in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 155 TLYVEGLPADSTKREVAHIFRPFVGYK 181
           TL+V GLP D   RE+  +FRPF GY+
Sbjct: 3   TLFVSGLPVDIKPRELYLLFRPFKGYE 29

This subfamily corresponds to the RRM of RBP-MS2, encoded by RBPMS2 gene, a paralog of RNA-binding protein with multiple splicing (RBP-MS). The biological function of RBP-MS2 remains unclear. Like RBP-MS, RBP-MS2 contains an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	98.78
KOG0114	124	consensus Predicted RNA-binding protein (RRM super	97.94
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	97.56
KOG1457	284	consensus RNA binding protein (contains RRM repeat	97.42
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	97.16
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	96.99
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	96.93
smart00362	72	RRM_2 RNA recognition motif.	96.9
KOG1457	284	consensus RNA binding protein (contains RRM repeat	96.86
COG0724	306	RNA-binding proteins (RRM domain) [General functio	96.53
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	96.37
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	96.32
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	96.21
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	96.05
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	95.92
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	95.75
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	95.72
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	95.53
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	95.43
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	94.49
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	94.37
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	94.36
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	94.16
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	94.13
smart00360	71	RRM RNA recognition motif.	93.92
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	93.39
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	92.51
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	91.71
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	91.31
KOG0113	335	consensus U1 small nuclear ribonucleoprotein (RRM	90.36
KOG0145	360	consensus RNA-binding protein ELAV/HU (RRM superfa	89.61
KOG0122	270	consensus Translation initiation factor 3, subunit	88.64
KOG0116	419	consensus RasGAP SH3 binding protein rasputin, con	85.27
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	83.79
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	83.5
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	81.55
KOG4660	549	consensus Protein Mei2, essential for commitment t	81.4

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=98.78  E-value=7.1e-09  Score=90.12  Aligned_cols=44  Identities=30%  Similarity=0.675  Sum_probs=40.5

Q ss_pred             CCCCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCc
Q 029297          145 TLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES  190 (195)
Q Consensus       145 ~~~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~  190 (195)
                      ....||  |+|||++|||++++.++|+.||.||+||||||||+.++
T Consensus       140 ~~~~pp--n~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~  183 (221)
T KOG4206|consen  140 AQMAPP--NNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS  183 (221)
T ss_pred             ccCCCC--ceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC
Confidence            445788  99999999999999999999999999999999999765

>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=97.94  E-value=1.3e-05  Score=64.59  Aligned_cols=44  Identities=25%  Similarity=0.545  Sum_probs=40.7

Q ss_pred             CCCCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          145 TLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       145 ~~~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ...+||+.|.||||.|||.++|.++..+||..|--.++||+-..
T Consensus        10 ~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~   53 (124)
T KOG0114|consen   10 NIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT   53 (124)
T ss_pred             CCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc
Confidence            56889999999999999999999999999999999999998643

>PF00076 RRM_1: RNA recognition motif

Probab=97.56  E-value=7.8e-05  Score=48.97  Aligned_cols=33  Identities=30%  Similarity=0.588  Sum_probs=31.7

Q ss_pred             EEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      |||.|||.+||+++|..+|++|.....+++...
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~   33 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN   33 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhccccccccc
Confidence            799999999999999999999999999999985

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]

Probab=97.42  E-value=5.8e-05  Score=67.42  Aligned_cols=38  Identities=21%  Similarity=0.504  Sum_probs=35.3

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +|++|||.||..+||+++|..||..|+||.-+|+-.+.
T Consensus       209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~  246 (284)
T KOG1457|consen  209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG  246 (284)
T ss_pred             hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC
Confidence            59999999999999999999999999999999987643

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=97.16  E-value=0.00056  Score=58.73  Aligned_cols=37  Identities=19%  Similarity=0.412  Sum_probs=34.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .+.|||.|||.+||+++|.++|++|...++||++..+
T Consensus       269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~  305 (352)
T TIGR01661       269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDL  305 (352)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcC
Confidence            4579999999999999999999999999999999654

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=96.99  E-value=0.0018  Score=51.72  Aligned_cols=37  Identities=16%  Similarity=0.414  Sum_probs=33.8

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +..|||.|||.++|+++|..+|.+|.-.++|+++...
T Consensus        34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~   70 (144)
T PLN03134         34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDR   70 (144)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecC
Confidence            5679999999999999999999999999999998543

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=96.93  E-value=0.00099  Score=61.67  Aligned_cols=40  Identities=23%  Similarity=0.421  Sum_probs=36.2

Q ss_pred             CCCCCCceEEecCCCCcccHHHHHhhccCCCC--ceEEEeeecC
Q 029297          148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVG--YKEVRLVIKE  189 (195)
Q Consensus       148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpG--FkEVRLVp~r  189 (195)
                      .||  +++|||.|||.++|+++|..||++|..  .+.|++.+.+
T Consensus       391 ~~p--s~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~  432 (481)
T TIGR01649       391 QPP--SATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD  432 (481)
T ss_pred             CCC--CcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC
Confidence            356  899999999999999999999999987  8889998865

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>smart00362 RRM_2 RNA recognition motif

Probab=96.90  E-value=0.0016  Score=41.23  Aligned_cols=35  Identities=29%  Similarity=0.534  Sum_probs=32.4

Q ss_pred             eEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +|||.|||.+++.++|..+|++|...+++++...+
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~   35 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT   35 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC
Confidence            48999999999999999999999999999998765

>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]

Probab=96.86  E-value=0.00087  Score=60.07  Aligned_cols=36  Identities=47%  Similarity=0.831  Sum_probs=32.8

Q ss_pred             CCCCceEEecCCCCcccHHHHHhhccCCCCceEEEe
Q 029297          150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRL  185 (195)
Q Consensus       150 Pd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRL  185 (195)
                      |++-+||||.+||.|+..+||..||+.|+||...-|
T Consensus        31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslL   66 (284)
T KOG1457|consen   31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLL   66 (284)
T ss_pred             ccccceeeeccCCcccCHHHHHHHhccCCCccceee
Confidence            567899999999999999999999999999987644

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=96.53  E-value=0.0035  Score=47.89  Aligned_cols=37  Identities=38%  Similarity=0.617  Sum_probs=34.4

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|.-...|+++-.+
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~  151 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR  151 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc
Confidence            6899999999999999999999999999999998754

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=96.37  E-value=0.0057  Score=55.52  Aligned_cols=36  Identities=31%  Similarity=0.452  Sum_probs=33.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +..|||.|||.++|+++|.++|.+|--.++|+++..
T Consensus       107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d  142 (346)
T TIGR01659       107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRD  142 (346)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence            789999999999999999999999999999999864

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>PF14259 RRM_6: RNA recognition motif (a

Probab=96.32  E-value=0.0065  Score=40.81  Aligned_cols=34  Identities=26%  Similarity=0.606  Sum_probs=28.1

Q ss_pred             EEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      |||.|||.++|+++|..+|..|-=..+|++...+
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~   34 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNK   34 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEEEEEEEEST
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeee
Confidence            7999999999999999999999447789988764

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=96.21  E-value=0.0064  Score=55.14  Aligned_cols=38  Identities=16%  Similarity=0.358  Sum_probs=34.7

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ..+.|||.|||..+|+++|..||.+|-.++.|+++...
T Consensus       294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~  331 (509)
T TIGR01642       294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDI  331 (509)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC
Confidence            36789999999999999999999999999999998643

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=96.05  E-value=0.0072  Score=54.88  Aligned_cols=37  Identities=22%  Similarity=0.405  Sum_probs=33.8

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +..|||.|||.++|+++|.++|.+|-..++|+++..+
T Consensus       193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~  229 (346)
T TIGR01659       193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK  229 (346)
T ss_pred             cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence            5679999999999999999999999999999998653

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=95.92  E-value=0.011  Score=53.09  Aligned_cols=37  Identities=32%  Similarity=0.476  Sum_probs=34.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +.+|||.|||.++|+++|..+|.+|...+.|+++...
T Consensus       186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~  222 (457)
T TIGR01622       186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP  222 (457)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence            7899999999999999999999999999999998643

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=95.75  E-value=0.015  Score=36.89  Aligned_cols=35  Identities=34%  Similarity=0.611  Sum_probs=31.1

Q ss_pred             eEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +|+|.|||..+++++|..+|++|...+.+.+...+
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~   35 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK   35 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC
Confidence            48999999999999999999999888888888654

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=95.72  E-value=0.013  Score=52.60  Aligned_cols=36  Identities=17%  Similarity=0.321  Sum_probs=34.1

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      .++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus        89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d  124 (457)
T TIGR01622        89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKD  124 (457)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeec
Confidence            789999999999999999999999999999999864

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=95.53  E-value=0.017  Score=53.56  Aligned_cols=36  Identities=19%  Similarity=0.318  Sum_probs=33.7

Q ss_pred             CceEEecCCCC-cccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~-d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||. .+|+++|..||.+|...++|+++..
T Consensus       275 ~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~  311 (481)
T TIGR01649       275 GSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN  311 (481)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence            88999999997 6999999999999999999999864

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=95.43  E-value=0.029  Score=54.80  Aligned_cols=42  Identities=21%  Similarity=0.398  Sum_probs=36.4

Q ss_pred             CCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ..+|+....|||.|||.++|+++|..+|.+|--.++|||+..
T Consensus        52 ~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D   93 (578)
T TIGR01648        52 GVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD   93 (578)
T ss_pred             CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC
Confidence            334555678999999999999999999999999999999864

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=94.49  E-value=0.039  Score=53.86  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=29.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCC--CCceEEEee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPF--VGYKEVRLV  186 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qF--pGFkEVRLV  186 (195)
                      +++|||.|||.++|+++|..+|.+|  --.+.|+++
T Consensus       233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~  268 (578)
T TIGR01648       233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI  268 (578)
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee
Confidence            6899999999999999999999999  556666655

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=94.37  E-value=0.053  Score=53.42  Aligned_cols=37  Identities=16%  Similarity=0.347  Sum_probs=34.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .+.|||.|||.++++++|..+|++|...++||++...
T Consensus       204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~  240 (612)
T TIGR01645       204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP  240 (612)
T ss_pred             cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC
Confidence            5789999999999999999999999999999999754

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=94.36  E-value=0.035  Score=54.87  Aligned_cols=36  Identities=31%  Similarity=0.450  Sum_probs=33.7

Q ss_pred             ceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++||.|||.+||+++|...|++|--.+-+++|.-.
T Consensus       293 ~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k  328 (678)
T KOG0127|consen  293 KTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDK  328 (678)
T ss_pred             ceEEEecCCccccHHHHHHHHHhhccceeEEEEecc
Confidence            899999999999999999999999999999999643

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=94.16  E-value=0.069  Score=45.98  Aligned_cols=37  Identities=35%  Similarity=0.628  Sum_probs=33.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +..|||.|||.++|+++|..+|++|...+.++++..+
T Consensus        89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~  125 (352)
T TIGR01661        89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDN  125 (352)
T ss_pred             cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecC
Confidence            5579999999999999999999999999999987654

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=94.13  E-value=0.03  Score=53.98  Aligned_cols=32  Identities=25%  Similarity=0.454  Sum_probs=27.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEE
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVR  184 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVR  184 (195)
                      -|+|||.||+.++|++.|+.+|++|--...|.
T Consensus       259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVk  290 (506)
T KOG0117|consen  259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVK  290 (506)
T ss_pred             eeeeeeeccchhhhHHHHHHHHHhccceEEee
Confidence            68999999999999999999999994444443

>smart00360 RRM RNA recognition motif

Probab=93.92  E-value=0.066  Score=33.46  Aligned_cols=32  Identities=38%  Similarity=0.573  Sum_probs=28.7

Q ss_pred             ecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          158 VEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       158 VQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      |.|||.++++++|..+|++|-..++|++...+
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~   32 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDK   32 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCC
Confidence            57999999999999999999889999888654

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=93.39  E-value=0.11  Score=48.34  Aligned_cols=37  Identities=19%  Similarity=0.378  Sum_probs=33.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ...|||.|||.++|+++|.++|++|.-.++|+++...
T Consensus       285 ~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~  321 (562)
T TIGR01628       285 GVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE  321 (562)
T ss_pred             CCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC
Confidence            5679999999999999999999999999999998653

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=92.51  E-value=0.17  Score=47.25  Aligned_cols=37  Identities=16%  Similarity=0.316  Sum_probs=33.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ...|||.|||.++|+++|..+|.+|....+|+++...
T Consensus       178 ~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~  214 (562)
T TIGR01628       178 FTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG  214 (562)
T ss_pred             CCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC
Confidence            5679999999999999999999999999999998654

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=91.71  E-value=0.24  Score=48.92  Aligned_cols=36  Identities=17%  Similarity=0.358  Sum_probs=33.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ...|||.|||.++|+++|..+|.+|--.++|+++..
T Consensus       107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D  142 (612)
T TIGR01645       107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWD  142 (612)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeec
Confidence            567999999999999999999999999999999864

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=91.31  E-value=0.2  Score=45.56  Aligned_cols=25  Identities=28%  Similarity=0.632  Sum_probs=23.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPF  177 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qF  177 (195)
                      .++|||.|||.++|+++|..+|.+|
T Consensus       175 ~r~lyVgnLp~~~t~~~l~~~F~~~  199 (509)
T TIGR01642       175 ARRLYVGGIPPEFVEEAVVDFFNDL  199 (509)
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHHH
Confidence            6789999999999999999999874

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]

Probab=90.36  E-value=0.26  Score=45.78  Aligned_cols=38  Identities=29%  Similarity=0.442  Sum_probs=35.6

Q ss_pred             CCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       151 d~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      |+=+||||.-|+.++++..|...|..|-=.|.||||--
T Consensus        99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d  136 (335)
T KOG0113|consen   99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRD  136 (335)
T ss_pred             CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeee
Confidence            55899999999999999999999999999999999964

>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]

Probab=89.61  E-value=0.22  Score=45.98  Aligned_cols=34  Identities=44%  Similarity=0.757  Sum_probs=28.4

Q ss_pred             CCCCceEEecCCCCcccHHHHHhhccCCCCceEEEe
Q 029297          150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRL  185 (195)
Q Consensus       150 Pd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRL  185 (195)
                      .|+|  |||.+||...|+.||+.||++|--....|+
T Consensus       126 k~aN--LYvSGlPktMtqkelE~iFs~fGrIItSRi  159 (360)
T KOG0145|consen  126 KDAN--LYVSGLPKTMTQKELEQIFSPFGRIITSRI  159 (360)
T ss_pred             cccc--eEEecCCccchHHHHHHHHHHhhhhhhhhh
Confidence            4456  999999999999999999999876655554

>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]

Probab=88.64  E-value=0.56  Score=42.54  Aligned_cols=37  Identities=27%  Similarity=0.450  Sum_probs=33.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|=|.||++++++.+|.+||.+|-.+..|-|+..+
T Consensus       189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK  225 (270)
T KOG0122|consen  189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDK  225 (270)
T ss_pred             cceeEEecCccccChhHHHHHhhccCccceeEEEEcc
Confidence            7799999999999999999999999999999887544

>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]

Probab=85.27  E-value=0.6  Score=44.32  Aligned_cols=35  Identities=29%  Similarity=0.554  Sum_probs=30.7

Q ss_pred             ceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ..|||.|||.++|..+|++.|.+|---++.|+--.
T Consensus       289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr  323 (419)
T KOG0116|consen  289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVR  323 (419)
T ss_pred             cceEeecCCCCCCHHHHHHHHhhcccccccceEEe
Confidence            34999999999999999999999988888887543

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=83.79  E-value=0.4  Score=46.50  Aligned_cols=42  Identities=21%  Similarity=0.293  Sum_probs=36.2

Q ss_pred             CCCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          146 LPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       146 ~~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +.++.  ++-|||.-|+..|||.|+.+||.+|-=.++|++....
T Consensus       119 er~~~--e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~  160 (510)
T KOG0144|consen  119 ERIVE--ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP  160 (510)
T ss_pred             hcccc--chhhhhhhccccccHHHHHHHHHhhCccchhhheecc
Confidence            44555  6679999999999999999999999999999988644

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=83.50  E-value=0.98  Score=43.27  Aligned_cols=43  Identities=21%  Similarity=0.333  Sum_probs=37.4

Q ss_pred             CCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCcc
Q 029297          147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK  191 (195)
Q Consensus       147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~  191 (195)
                      -.||  .|+|||=.|.+-+|.+.|+.||+.|--.+.+-+|--+.+
T Consensus       235 ~~PP--eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~kt  277 (479)
T KOG0415|consen  235 VKPP--ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKT  277 (479)
T ss_pred             cCCC--cceEEEEecCCcccccchhhHHhhcccceeeeEEecccc
Confidence            4566  899999999999999999999999999999888865543

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=81.55  E-value=1.5  Score=33.63  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             eEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      ||.|.+++..|+.++|..+|++|.   +|..|-
T Consensus         3 il~~~g~~~~~~re~iK~~f~~~g---~V~yVD   32 (105)
T PF08777_consen    3 ILKFSGLGEPTSREDIKEAFSQFG---EVAYVD   32 (105)
T ss_dssp             EEEEEE--SS--HHHHHHHT-SS-----EEEEE
T ss_pred             EEEEecCCCCcCHHHHHHHHHhcC---CcceEE
Confidence            899999999999999999999876   666664

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=81.40  E-value=1.4  Score=43.52  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=34.1

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +..+|+|-|||..+|+++|..||+.|---||||+-+.+
T Consensus        74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~  111 (549)
T KOG4660|consen   74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK  111 (549)
T ss_pred             ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc
Confidence            37899999999999999999999999999998876643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	3e-04
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	6e-04

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186
           LPP+ +  LY+  LP   T  E+  IF  +   +++R+ 
Sbjct: 3   LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG 41

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Length = 100

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 137 AAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186
            +    H    LP     T ++  LP D T+  +   FR       VRL 
Sbjct: 3   GSHHHHHHRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGL-NISAVRLP 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	98.32
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	98.21
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	98.21
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	98.13
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	98.08
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.05
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.0
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	98.0
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	98.0
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	97.98
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	97.98
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	97.96
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	97.96
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	97.95
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	97.94
1x4e_A	85	RNA binding motif, single-stranded interacting pro	97.94
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	97.93
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	97.93
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	97.91
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	97.91
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	97.9
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	97.88
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	97.88
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	97.88
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	97.87
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	97.87
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	97.86
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	97.86
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	97.86
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	97.85
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	97.84
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	97.84
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	97.83
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	97.83
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	97.83
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	97.83
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	97.82
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	97.81
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	97.79
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	97.78
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	97.77
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	97.77
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	97.76
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	97.76
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	97.75
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	97.75
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	97.75
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	97.74
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	97.74
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	97.73
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	97.73
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	97.72
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	97.71
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	97.71
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	97.71
2div_A	99	TRNA selenocysteine associated protein; structural	97.71
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	97.71
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	97.7
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	97.7
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	97.7
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	97.69
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	97.69
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	97.69
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	97.69
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	97.69
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	97.68
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	97.68
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	97.68
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	97.67
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	97.67
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	97.66
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	97.65
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	97.65
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	97.64
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	97.64
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	97.63
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	97.63
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	97.62
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	97.62
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	97.61
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	97.61
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	97.61
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	97.61
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	97.61
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	97.6
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	97.6
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	97.6
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	97.6
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	97.59
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	97.59
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	97.59
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	97.59
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	97.58
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	97.57
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	97.57
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	97.56
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	97.56
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	97.56
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	97.53
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	97.53
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	97.53
1x5o_A	114	RNA binding motif, single-stranded interacting pro	97.53
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	97.52
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	97.51
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	97.51
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	97.51
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	97.51
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	97.49
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	97.48
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	97.48
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	97.48
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	97.47
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	97.46
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	97.46
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	97.43
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	97.43
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	97.43
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	97.42
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	97.41
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	97.4
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	97.37
2dis_A	109	Unnamed protein product; structural genomics, RRM	97.37
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	97.37
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	97.36
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	97.36
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	97.35
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	97.35
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	97.33
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	97.32
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	97.32
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	97.29
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	97.28
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	97.28
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	97.27
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	97.24
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	97.23
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	97.23
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	97.23
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	97.2
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	97.2
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	97.18
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	97.18
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	97.15
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	97.15
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	97.15
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	97.13
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	97.12
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	97.09
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	97.08
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	97.06
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	97.05
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	97.05
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	97.04
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	97.03
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	97.01
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	96.99
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	96.98
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	96.98
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	96.97
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	96.97
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	96.95
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	95.99
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	96.93
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	96.92
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	96.87
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	96.86
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	96.82
1x5p_A	97	Negative elongation factor E; structure genomics,	96.79
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	96.77
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	96.77
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	96.75
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	96.74
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	96.62
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	96.42
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	96.42
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	96.33
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	96.31
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	96.27
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	96.19
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	96.08
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	96.0
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	95.92
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	95.16
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	94.98
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	93.32
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	92.6
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	91.48
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	90.25
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	88.16

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=98.32  E-value=4.7e-07  Score=67.77  Aligned_cols=40  Identities=18%  Similarity=0.256  Sum_probs=36.9

Q ss_pred             CCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ..||  +++|||.|||.++|+++|..||.+|-..++|++++.
T Consensus        17 ~~~p--s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~   56 (100)
T 3r27_A           17 KTPA--SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK   56 (100)
T ss_dssp             CCCC--CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred             cCCC--CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC
Confidence            4567  999999999999999999999999999999999864

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.21  E-value=2.5e-06  Score=60.26  Aligned_cols=41  Identities=32%  Similarity=0.617  Sum_probs=36.1

Q ss_pred             CCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .|+.++++|||.|||.++|+++|..+|.+| |.++|+++..+
T Consensus        10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-gi~~v~i~~~~   50 (103)
T 2dng_A           10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDK   50 (103)
T ss_dssp             CCSSSCEEEEEESCCTTCCHHHHHHHTTTS-CEEEEEEEECS
T ss_pred             CCCCCCeEEEEeCCCCCCCHHHHHHHHHhC-CceEEEEeecC
Confidence            344458999999999999999999999999 89999998654

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.21  E-value=1.8e-06  Score=63.48  Aligned_cols=40  Identities=15%  Similarity=0.135  Sum_probs=36.8

Q ss_pred             CCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ..+|  +++|||.|||.++|+++|..+|.+|-..++|++++.
T Consensus        11 ~~~p--~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~   50 (104)
T 1wex_A           11 KVSV--SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF   50 (104)
T ss_dssp             CCCC--CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT
T ss_pred             cCCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC
Confidence            4566  899999999999999999999999999999999864

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.13  E-value=5.2e-06  Score=60.88  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=35.9

Q ss_pred             CCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      .+|  +++|||.|||.++|+++|..+|.+|-..++|+++..
T Consensus        12 ~~p--~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~   50 (101)
T 2cq1_A           12 GAP--SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG   50 (101)
T ss_dssp             SSC--CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT
T ss_pred             CCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC
Confidence            345  899999999999999999999999999999999864

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.08  E-value=7.4e-06  Score=57.95  Aligned_cols=41  Identities=29%  Similarity=0.468  Sum_probs=35.3

Q ss_pred             CCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .|..+.++|||.|||.++|+++|..+|.+|. .++|+++..+
T Consensus        10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~   50 (104)
T 1wi8_A           10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP   50 (104)
T ss_dssp             CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCS
T ss_pred             CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCC
Confidence            3333489999999999999999999999995 9999998654

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.05  E-value=5e-06  Score=63.56  Aligned_cols=39  Identities=26%  Similarity=0.310  Sum_probs=36.1

Q ss_pred             CCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      .+|  +++|||.|||.++|+++|..+|.+|-..++|+++..
T Consensus        28 ~~p--s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~   66 (119)
T 2ad9_A           28 GVP--SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG   66 (119)
T ss_dssp             SSC--CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG
T ss_pred             CCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC
Confidence            445  899999999999999999999999999999999864

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.00  E-value=6.6e-06  Score=60.91  Aligned_cols=37  Identities=8%  Similarity=0.174  Sum_probs=34.8

Q ss_pred             CCceEEecCCCC-cccHHHHHhhccCCCCceEEEeeec
Q 029297          152 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       152 ~N~ILFVQNLP~-d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ++++|||.|||. ++|+++|..+|.+|-..++|+++..
T Consensus        14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~   51 (102)
T 1x4d_A           14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK   51 (102)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC
Confidence            489999999999 9999999999999999999999864

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.00  E-value=1.1e-05  Score=61.85  Aligned_cols=49  Identities=14%  Similarity=0.158  Sum_probs=40.4

Q ss_pred             ccCCCCCCCCCCCCCCCceE--EecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          137 AAARPGHETLPLPPDASSTL--YVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       137 ~~~rp~~~~~~lPPd~N~IL--FVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      -+.|++.+....||  |+||  ||.|||..+|+++|..+|.+|...++|+++.
T Consensus         9 ~i~~~~~~~~~~~p--s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~   59 (124)
T 2e5i_A            9 RITRPGNTDDPSGG--NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK   59 (124)
T ss_dssp             CCCCSCCCCCCCCC--CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred             eeeCCCCCCCCCCC--CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence            34566554455567  8886  5899999999999999999999999999976

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=98.00  E-value=1.5e-05  Score=56.16  Aligned_cols=37  Identities=22%  Similarity=0.389  Sum_probs=34.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|-..++|+++..+
T Consensus        15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   51 (105)
T 2dnh_A           15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP   51 (105)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence            8899999999999999999999999999999998754

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.98  E-value=1.8e-05  Score=55.73  Aligned_cols=40  Identities=18%  Similarity=0.319  Sum_probs=36.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCccC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKL  192 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~  192 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+.+.
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~   54 (103)
T 2cq3_A           15 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS   54 (103)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC
Confidence            7899999999999999999999999999999999765443

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=97.98  E-value=1.9e-05  Score=55.37  Aligned_cols=41  Identities=24%  Similarity=0.369  Sum_probs=36.2

Q ss_pred             CCCCCceEEecCCCCcccHHHHHhhccCCCCceE--------EEeeecC
Q 029297          149 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKE  189 (195)
Q Consensus       149 PPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE--------VRLVp~r  189 (195)
                      |+..+.+|||.|||.++|+++|..+|++|--.++        |+++..+
T Consensus         9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~   57 (99)
T 2la6_A            9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR   57 (99)
T ss_dssp             SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECT
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecC
Confidence            3444899999999999999999999999999998        9998653

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.96  E-value=9.5e-06  Score=57.10  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=37.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCccCCC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLLN  194 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~g  194 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+.++.|
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g   56 (103)
T 2cqi_A           15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP   56 (103)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCC
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCC
Confidence            789999999999999999999999999999999986554433

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=97.96  E-value=8.6e-06  Score=58.38  Aligned_cols=40  Identities=30%  Similarity=0.572  Sum_probs=36.4

Q ss_pred             CCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      +||+++++|||.|||.++|+++|..+|.+|.-.++|+++.
T Consensus         3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~   42 (115)
T 3lqv_A            3 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN   42 (115)
T ss_dssp             CCTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee
Confidence            4555699999999999999999999999999999999985

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.95  E-value=4.3e-06  Score=62.92  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus        16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~   51 (105)
T 1sjq_A           16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG   51 (105)
T ss_dssp             CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence            889999999999999999999999999999999864

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=1.7e-05  Score=55.46  Aligned_cols=36  Identities=25%  Similarity=0.517  Sum_probs=34.2

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|-..++|+++..
T Consensus        10 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~   45 (99)
T 2dgs_A           10 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD   45 (99)
T ss_dssp             CCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence            789999999999999999999999999999999864

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.94  E-value=1.5e-05  Score=54.18  Aligned_cols=38  Identities=21%  Similarity=0.525  Sum_probs=35.0

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ++++|||.|||.++|+++|..+|.+|-..++|+++..+
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~   41 (85)
T 1x4e_A            4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDK   41 (85)
T ss_dssp             CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            38899999999999999999999999999999998653

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=97.93  E-value=2e-05  Score=56.65  Aligned_cols=37  Identities=19%  Similarity=0.488  Sum_probs=34.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|-..++|+++..+
T Consensus        25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   61 (115)
T 2cpz_A           25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK   61 (115)
T ss_dssp             TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence            7899999999999999999999999999999998754

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.93  E-value=1.9e-05  Score=54.38  Aligned_cols=35  Identities=23%  Similarity=0.431  Sum_probs=33.4

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      .++|||.|||.++|+++|..+|.+| ..++|+++..
T Consensus        10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~   44 (91)
T 2dgw_A           10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN   44 (91)
T ss_dssp             CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC
T ss_pred             ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC
Confidence            7899999999999999999999999 9999999875

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=97.91  E-value=1.2e-05  Score=55.21  Aligned_cols=36  Identities=17%  Similarity=0.223  Sum_probs=34.1

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..
T Consensus         8 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~   43 (92)
T 2dgv_A            8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME   43 (92)
T ss_dssp             CCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc
Confidence            789999999999999999999999999999999864

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.91  E-value=2e-05  Score=55.27  Aligned_cols=40  Identities=28%  Similarity=0.418  Sum_probs=35.8

Q ss_pred             CCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ..++  +++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus        11 ~~~~--~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~   50 (99)
T 2cpj_A           11 TFTQ--RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD   50 (99)
T ss_dssp             CCCC--TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT
T ss_pred             cCCC--CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC
Confidence            3455  889999999999999999999999999999999853

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.90  E-value=1.9e-05  Score=55.57  Aligned_cols=37  Identities=19%  Similarity=0.408  Sum_probs=34.6

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      .+++|||.|||.++|+++|..+|.+|--.++|+++..
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~   50 (103)
T 2d9p_A           14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME   50 (103)
T ss_dssp             SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence            4889999999999999999999999999999999865

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.88  E-value=2e-05  Score=55.40  Aligned_cols=36  Identities=33%  Similarity=0.567  Sum_probs=34.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|-..++|+++..
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~   50 (107)
T 2cph_A           15 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKK   50 (107)
T ss_dssp             CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecC
Confidence            889999999999999999999999999999999865

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=1.9e-05  Score=55.52  Aligned_cols=37  Identities=16%  Similarity=0.231  Sum_probs=34.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        13 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~   49 (103)
T 2dnm_A           13 MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREP   49 (103)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCS
T ss_pred             CeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence            8999999999999999999999999999999998643

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.88  E-value=2.1e-05  Score=54.24  Aligned_cols=38  Identities=32%  Similarity=0.426  Sum_probs=35.0

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ++++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~   41 (95)
T 2dnz_A            4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDS   41 (95)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecC
Confidence            38899999999999999999999999999999998754

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.87  E-value=2.5e-05  Score=56.61  Aligned_cols=37  Identities=19%  Similarity=0.310  Sum_probs=32.2

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceE--EEeeecC
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE--VRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE--VRLVp~r  189 (195)
                      .+++|||.|||.++|+++|..+|.+| |.++  |+|+..+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v~~~v~i~~d~   52 (114)
T 2cpy_A           14 AKVCAHITNIPFSITKMDVLQFLEGI-PVDENAVHVLVDN   52 (114)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHTTTS-CCCSTTEEECCCT
T ss_pred             CccEEEEeCcCCcCCHHHHHHHHHhC-CCcCCeEEEEECC
Confidence            37899999999999999999999999 6654  9998644

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.87  E-value=2.6e-05  Score=54.45  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=34.0

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..
T Consensus        17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~   52 (97)
T 1why_A           17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG   52 (97)
T ss_dssp             CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC
Confidence            789999999999999999999999999999998864

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.86  E-value=2.3e-05  Score=53.86  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=34.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|.-.++|+++...
T Consensus        15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~   51 (95)
T 2cqc_A           15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ   51 (95)
T ss_dssp             GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcC
Confidence            8999999999999999999999999999999998643

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.86  E-value=3.1e-05  Score=54.18  Aligned_cols=37  Identities=32%  Similarity=0.557  Sum_probs=34.8

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus        17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   53 (100)
T 2do4_A           17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR   53 (100)
T ss_dssp             CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC
Confidence            7899999999999999999999999999999998755

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.86  E-value=1.5e-05  Score=54.82  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=33.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      +++|||.|||.++|+++|..+|++|--.++|+++.
T Consensus         5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~   39 (88)
T 1wf0_A            5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK   39 (88)
T ss_dssp             CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec
Confidence            78999999999999999999999999999999875

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.85  E-value=2.1e-05  Score=54.45  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=32.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++.
T Consensus        10 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~   44 (92)
T 2dgt_A           10 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK   44 (92)
T ss_dssp             SEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC
Confidence            88999999999999999999999999999999873

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.84  E-value=5.2e-05  Score=53.92  Aligned_cols=37  Identities=19%  Similarity=0.514  Sum_probs=33.8

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      .+++|||.|||.++|+++|..+|.+|-..++|++...
T Consensus        21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~   57 (109)
T 1x4a_A           21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR   57 (109)
T ss_dssp             CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence            3789999999999999999999999999999998653

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.84  E-value=2.9e-05  Score=53.43  Aligned_cols=37  Identities=27%  Similarity=0.443  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~   52 (94)
T 2e5h_A           16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDK   52 (94)
T ss_dssp             TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC
Confidence            7899999999999999999999999999999998754

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.83  E-value=2.5e-05  Score=56.42  Aligned_cols=41  Identities=17%  Similarity=0.294  Sum_probs=36.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCccCC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLL  193 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~  193 (195)
                      +++|||.|||.++|+++|..+|.+|-..++|+++..+.+..
T Consensus        29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~k   69 (109)
T 2err_A           29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK   69 (109)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCT
T ss_pred             CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCc
Confidence            88999999999999999999999999999999987654433

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.83  E-value=2.7e-05  Score=52.68  Aligned_cols=36  Identities=28%  Similarity=0.451  Sum_probs=33.8

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|-..++|+++..
T Consensus        12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~   47 (85)
T 2ytc_A           12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR   47 (85)
T ss_dssp             CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG
T ss_pred             ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC
Confidence            789999999999999999999999999999999863

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=97.83  E-value=4.7e-05  Score=54.74  Aligned_cols=37  Identities=24%  Similarity=0.480  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|-..++|+++..+
T Consensus        40 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~   76 (118)
T 2khc_A           40 GCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK   76 (118)
T ss_dssp             SEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence            8899999999999999999999999999999998653

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.83  E-value=1.3e-05  Score=60.73  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=35.5

Q ss_pred             CCCCCCceEEecCCCCc-ccHHHHHhhccCCCCceEEEeeec
Q 029297          148 LPPDASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       148 lPPd~N~ILFVQNLP~d-~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      .+|  +++|||.|||.+ +|+++|..+|.+|-..++|+|+..
T Consensus        22 ~~p--~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~   61 (112)
T 1x4f_A           22 QEL--GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM   61 (112)
T ss_dssp             SCC--CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT
T ss_pred             CCC--CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC
Confidence            445  899999999998 999999999999999999999853

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=97.82  E-value=5.4e-06  Score=58.47  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=33.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCC-CceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFp-GFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|++|- -.++||++..+
T Consensus         1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~   38 (91)
T 2lxi_A            1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNK   38 (91)
T ss_dssp             CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecC
Confidence            58999999999999999999999996 68999998644

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.81  E-value=4.3e-05  Score=53.73  Aligned_cols=37  Identities=24%  Similarity=0.508  Sum_probs=34.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~   51 (103)
T 2cq0_A           15 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK   51 (103)
T ss_dssp             SEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecC
Confidence            8999999999999999999999999999999998653

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=97.79  E-value=3.8e-05  Score=52.31  Aligned_cols=37  Identities=19%  Similarity=0.445  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|.-.++|+++..+
T Consensus        11 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   47 (87)
T 3s7r_A           11 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP   47 (87)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecC
Confidence            7899999999999999999999999999999998653

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.78  E-value=1.4e-05  Score=55.68  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus         5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   41 (98)
T 2cpf_A            5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKK   41 (98)
T ss_dssp             CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            7899999999999999999999999999999998643

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=97.77  E-value=2.3e-05  Score=53.06  Aligned_cols=37  Identities=24%  Similarity=0.389  Sum_probs=34.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +.+|||.|||.++|+++|..+|++|-..++|+++..+
T Consensus         6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   42 (87)
T 3bs9_A            6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDM   42 (87)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC
Confidence            8899999999999999999999999999999998753

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.77  E-value=2.6e-05  Score=53.76  Aligned_cols=34  Identities=21%  Similarity=0.512  Sum_probs=32.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV  186 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV  186 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++
T Consensus         8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~   41 (90)
T 2dnq_A            8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDII   41 (90)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE
T ss_pred             CeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE
Confidence            8899999999999999999999999999999987

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=97.76  E-value=4.1e-05  Score=56.73  Aligned_cols=37  Identities=19%  Similarity=0.354  Sum_probs=34.1

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceE--EEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKE--VRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE--VRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++  ||++..+
T Consensus        23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~   61 (131)
T 2m2b_A           23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDK   61 (131)
T ss_dssp             CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcC
Confidence            889999999999999999999999998877  9998655

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.76  E-value=4.5e-05  Score=53.98  Aligned_cols=37  Identities=24%  Similarity=0.486  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   51 (111)
T 1x4h_A           15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP   51 (111)
T ss_dssp             CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            8899999999999999999999999999999998653

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=97.75  E-value=1.6e-05  Score=56.27  Aligned_cols=39  Identities=26%  Similarity=0.393  Sum_probs=32.6

Q ss_pred             CCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       150 Pd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +...++|||.|||.++|+++|..+|.+|- .++|+++..+
T Consensus        16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~   54 (100)
T 2j76_E           16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP   54 (100)
T ss_dssp             ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCT
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC
Confidence            34489999999999999999999999996 9999998654

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.75  E-value=4.7e-05  Score=53.32  Aligned_cols=38  Identities=16%  Similarity=0.308  Sum_probs=31.5

Q ss_pred             CCCCCCCceEEecCCCCcccHHHHHhhccCC--CCceEEEee
Q 029297          147 PLPPDASSTLYVEGLPADSTKREVAHIFRPF--VGYKEVRLV  186 (195)
Q Consensus       147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qF--pGFkEVRLV  186 (195)
                      ..++  +++|||.|||.++|+++|..+|.+|  --.++|++.
T Consensus        11 ~~~~--~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~   50 (99)
T 2cpd_A           11 TMSS--VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI   50 (99)
T ss_dssp             CSSC--CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC
T ss_pred             ccCC--cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe
Confidence            3445  8999999999999999999999999  556666653

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=97.75  E-value=2.7e-05  Score=52.86  Aligned_cols=42  Identities=19%  Similarity=0.222  Sum_probs=34.9

Q ss_pred             CceEEecCCCCcc------cHHHHHhhccCCCCceEEEeeecCccCCC
Q 029297          153 SSTLYVEGLPADS------TKREVAHIFRPFVGYKEVRLVIKESKLLN  194 (195)
Q Consensus       153 N~ILFVQNLP~d~------T~~eL~~LF~qFpGFkEVRLVp~r~~~~g  194 (195)
                      +++|||.|||.++      |+++|..+|.+|...++|+++....+..|
T Consensus         1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g   48 (81)
T 2krb_A            1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKG   48 (81)
T ss_dssp             CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCC
T ss_pred             CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeE
Confidence            4689999999999      88999999999999999998843333333

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=97.74  E-value=2.8e-05  Score=52.41  Aligned_cols=36  Identities=22%  Similarity=0.506  Sum_probs=33.8

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus         7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~   42 (85)
T 3mdf_A            7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD   42 (85)
T ss_dssp             SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEEC
Confidence            889999999999999999999999999999998764

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=97.74  E-value=8e-05  Score=53.19  Aligned_cols=33  Identities=18%  Similarity=0.346  Sum_probs=31.5

Q ss_pred             CceEEecCCCCc-ccHHHHHhhccCCCCceEEEe
Q 029297          153 SSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRL  185 (195)
Q Consensus       153 N~ILFVQNLP~d-~T~~eL~~LF~qFpGFkEVRL  185 (195)
                      +++|||.|||.+ +|+++|..+|.+|--.++|++
T Consensus        27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i   60 (110)
T 1wf1_A           27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV   60 (110)
T ss_dssp             SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE
Confidence            789999999999 999999999999999999887

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.73  E-value=5.7e-05  Score=52.83  Aligned_cols=34  Identities=32%  Similarity=0.519  Sum_probs=30.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+   |.+|+++..+
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~F~~---~~~~~~~~~~   48 (102)
T 2fc8_A           15 SKTLFVKGLSEDTTEETLKESFDG---SVRARIVTDR   48 (102)
T ss_dssp             CSSEEEECCCTTCCHHHHHHTSTT---CSEEEEEECS
T ss_pred             CCEEEEeCCCCccCHHHHHHHhcC---CeEEEEEecC
Confidence            899999999999999999999985   5789988654

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.73  E-value=4.8e-05  Score=53.21  Aligned_cols=36  Identities=22%  Similarity=0.506  Sum_probs=34.0

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..
T Consensus        12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~   47 (102)
T 2cqb_A           12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD   47 (102)
T ss_dssp             CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEec
Confidence            889999999999999999999999999999999765

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.72  E-value=6.8e-05  Score=53.42  Aligned_cols=37  Identities=14%  Similarity=0.156  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~   51 (114)
T 2do0_A           15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK   51 (114)
T ss_dssp             CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence            8899999999999999999999999999999998754

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.71  E-value=4.3e-05  Score=54.56  Aligned_cols=40  Identities=20%  Similarity=0.438  Sum_probs=33.1

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCc----eEEEeeecCcc
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGY----KEVRLVIKESK  191 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGF----kEVRLVp~r~~  191 (195)
                      ++++|||.|||.++|+++|..+|.+|-..    ..++++.++++
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~   67 (115)
T 2cpx_A           24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMR   67 (115)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccc
Confidence            48999999999999999999999998766    56676644443

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=97.71  E-value=3.5e-05  Score=53.69  Aligned_cols=37  Identities=14%  Similarity=0.343  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|++|-..++|+++..+
T Consensus         2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   38 (96)
T 2x1f_A            2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDP   38 (96)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence            7899999999999999999999999999999998653

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=97.71  E-value=2.3e-05  Score=55.20  Aligned_cols=37  Identities=14%  Similarity=0.395  Sum_probs=34.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|-..++|+++..+
T Consensus        13 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   49 (106)
T 2dgp_A           13 AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDR   49 (106)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC
Confidence            7899999999999999999999999999999998743

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.71  E-value=3.4e-05  Score=53.72  Aligned_cols=37  Identities=11%  Similarity=0.230  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCce-EEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYK-EVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFk-EVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|.-.+ +|+++..+
T Consensus         9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~   46 (99)
T 2div_A            9 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNR   46 (99)
T ss_dssp             SSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECS
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecC
Confidence            78999999999999999999999999999 99998654

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=97.71  E-value=1.1e-05  Score=64.75  Aligned_cols=43  Identities=19%  Similarity=0.157  Sum_probs=38.2

Q ss_pred             CCCCCCceEEecCCCCcccHHHHHhhccCCCCc--eEEEeeecCccC
Q 029297          148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGY--KEVRLVIKESKL  192 (195)
Q Consensus       148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGF--kEVRLVp~r~~~  192 (195)
                      .||  +++|||.|||.++|+++|..+|++|...  ++|++++.+.++
T Consensus       120 ~~p--~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~  164 (205)
T 3tyt_A          120 QHP--SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSER  164 (205)
T ss_dssp             CCC--CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSS
T ss_pred             CCC--cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCC
Confidence            356  8999999999999999999999999998  999999876443

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=97.70  E-value=3.2e-05  Score=62.51  Aligned_cols=42  Identities=33%  Similarity=0.648  Sum_probs=37.8

Q ss_pred             CCCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          146 LPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       146 ~~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ...++  +++|||.|||.++|+++|..+|.+|...++|++++.+
T Consensus       202 ~~~~~--~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~  243 (282)
T 3pgw_A          202 SENPP--NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR  243 (282)
T ss_pred             cCCCC--CCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence            34456  8999999999999999999999999999999999765

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=97.70  E-value=1.9e-05  Score=57.51  Aligned_cols=39  Identities=15%  Similarity=0.339  Sum_probs=34.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCcc
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK  191 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~  191 (195)
                      +..|||.|||.++|+++|..+|.+|.-.++|+++..+.+
T Consensus         5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~   43 (115)
T 4f25_A            5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG   43 (115)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE
T ss_pred             CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC
Confidence            456999999999999999999999999999999876544

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.70  E-value=5e-05  Score=54.41  Aligned_cols=36  Identities=14%  Similarity=0.181  Sum_probs=33.1

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      .+..|||.|||.++|+++|..+|.+|--.++|+++.
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~   49 (108)
T 1x4c_A           14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR   49 (108)
T ss_dssp             CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec
Confidence            378999999999999999999999999899998875

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.69  E-value=6.3e-05  Score=52.85  Aligned_cols=37  Identities=16%  Similarity=0.200  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   51 (105)
T 1x5u_A           15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR   51 (105)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            8899999999999999999999999999999998654

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.69  E-value=3.8e-05  Score=53.90  Aligned_cols=37  Identities=16%  Similarity=0.337  Sum_probs=34.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccC-CCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRP-FVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~q-FpGFkEVRLVp~r  189 (195)
                      +.+|||.|||.++|+++|..+|.+ |.-.++|+++..+
T Consensus         9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~   46 (104)
T 2dhg_A            9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ   46 (104)
T ss_dssp             CCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC
Confidence            789999999999999999999999 9999999998754

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=97.69  E-value=4.9e-05  Score=55.20  Aligned_cols=36  Identities=19%  Similarity=0.432  Sum_probs=34.0

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..
T Consensus        22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~   57 (126)
T 3ex7_B           22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD   57 (126)
T ss_dssp             SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence            789999999999999999999999999999999854

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=97.69  E-value=4.7e-05  Score=53.69  Aligned_cols=37  Identities=16%  Similarity=0.286  Sum_probs=34.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|.-.++|+++..+
T Consensus        29 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   65 (107)
T 3ulh_A           29 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR   65 (107)
T ss_dssp             SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence            8999999999999999999999999999999998654

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.69  E-value=6.9e-05  Score=53.47  Aligned_cols=36  Identities=25%  Similarity=0.442  Sum_probs=32.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCce--------EEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYK--------EVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFk--------EVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|--.+        +|+++..
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~   58 (113)
T 2cpe_A           15 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD   58 (113)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEe
Confidence            78999999999999999999999997777        5888864

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.68  E-value=5.8e-05  Score=54.09  Aligned_cols=37  Identities=19%  Similarity=0.379  Sum_probs=34.2

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   61 (114)
T 2cq4_A           25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDR   61 (114)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecC
Confidence            6799999999999999999999999999999998644

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.68  E-value=5.9e-05  Score=53.18  Aligned_cols=37  Identities=16%  Similarity=0.297  Sum_probs=34.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        16 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~   52 (105)
T 2dh8_A           16 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK   52 (105)
T ss_dssp             SSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC
Confidence            7899999999999999999999999999999998753

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=97.68  E-value=4.9e-05  Score=55.16  Aligned_cols=34  Identities=35%  Similarity=0.678  Sum_probs=32.8

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV  186 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV  186 (195)
                      +++|||.|||.++|+++|..+|.+|-..++|+++
T Consensus        31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~   64 (108)
T 2jvo_A           31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL   64 (108)
T ss_dssp             CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence            8899999999999999999999999999999987

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=97.67  E-value=4.9e-05  Score=54.54  Aligned_cols=37  Identities=22%  Similarity=0.388  Sum_probs=33.8

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ...|||.|||.++|+++|..+|++|.-.++|+++..+
T Consensus        19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~   55 (99)
T 4fxv_A           19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK   55 (99)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecC
Confidence            4579999999999999999999999999999998644

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=97.67  E-value=3.4e-05  Score=55.78  Aligned_cols=37  Identities=11%  Similarity=0.372  Sum_probs=32.8

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCC--ceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVG--YKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpG--FkEVRLVp~r  189 (195)
                      =++|||.|||.++|+++|..+|++|-.  .++||++..+
T Consensus         9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~   47 (95)
T 2lkz_A            9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDK   47 (95)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCS
T ss_pred             cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecC
Confidence            578999999999999999999999974  6799998644

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=97.66  E-value=4.3e-05  Score=52.77  Aligned_cols=33  Identities=30%  Similarity=0.453  Sum_probs=31.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV  186 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV  186 (195)
                      +.+|||.|||.++|+++|..+|.+| ..++|++.
T Consensus         5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~   37 (88)
T 1wg1_A            5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD   37 (88)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe
Confidence            6789999999999999999999999 99999985

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=97.65  E-value=3.2e-05  Score=54.69  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=32.8

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      +++|||.|||.++|+++|..+|.+|-..++|+++.
T Consensus        11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~   45 (103)
T 2dgu_A           11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK   45 (103)
T ss_dssp             CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC
Confidence            78999999999999999999999999999998863

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.65  E-value=5.3e-05  Score=52.99  Aligned_cols=37  Identities=24%  Similarity=0.471  Sum_probs=34.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~   48 (102)
T 1x5s_A           12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR   48 (102)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC
Confidence            7899999999999999999999999999999998753

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.64  E-value=6.6e-05  Score=53.95  Aligned_cols=37  Identities=22%  Similarity=0.433  Sum_probs=34.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   53 (116)
T 2cqd_A           17 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR   53 (116)
T ss_dssp             SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcC
Confidence            7899999999999999999999999999999998653

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=97.64  E-value=7.4e-05  Score=53.45  Aligned_cols=37  Identities=22%  Similarity=0.397  Sum_probs=34.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   51 (115)
T 2dgo_A           15 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDM   51 (115)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence            8999999999999999999999999999999998653

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=97.63  E-value=8.5e-05  Score=53.10  Aligned_cols=43  Identities=19%  Similarity=0.211  Sum_probs=35.8

Q ss_pred             CCceEEecCCCCcc------cHHHHHhhccCCCCceEEEeeecCccCCC
Q 029297          152 ASSTLYVEGLPADS------TKREVAHIFRPFVGYKEVRLVIKESKLLN  194 (195)
Q Consensus       152 ~N~ILFVQNLP~d~------T~~eL~~LF~qFpGFkEVRLVp~r~~~~g  194 (195)
                      .+++|||.|||.++      |+++|..+|.+|.-.++|+++....+..|
T Consensus        14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G   62 (105)
T 2nlw_A           14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKG   62 (105)
T ss_dssp             CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCC
T ss_pred             CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeee
Confidence            37899999999999      88999999999999999999843333333

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.63  E-value=6.5e-05  Score=52.78  Aligned_cols=37  Identities=27%  Similarity=0.347  Sum_probs=34.4

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|.-.++|+++..+
T Consensus        15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   51 (103)
T 2cqg_A           15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL   51 (103)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECS
T ss_pred             CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            7889999999999999999999999999999998753

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=97.62  E-value=4.7e-05  Score=52.46  Aligned_cols=37  Identities=16%  Similarity=0.203  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~   52 (95)
T 2ywk_A           16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR   52 (95)
T ss_dssp             GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence            8899999999999999999999999999999998753

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.62  E-value=4.4e-05  Score=53.13  Aligned_cols=37  Identities=22%  Similarity=0.428  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus         8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   44 (99)
T 1whw_A            8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS   44 (99)
T ss_dssp             CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC
Confidence            7899999999999999999999999999999998654

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=97.61  E-value=6.2e-05  Score=54.42  Aligned_cols=38  Identities=18%  Similarity=0.347  Sum_probs=33.8

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .+++|||.|||.++|+++|..+|.+|.-.++|+++..+
T Consensus        24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~   61 (109)
T 2rs2_A           24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP   61 (109)
T ss_dssp             --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECC
Confidence            47899999999999999999999999999999998754

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.61  E-value=8e-05  Score=52.09  Aligned_cols=39  Identities=21%  Similarity=0.414  Sum_probs=32.9

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCcc
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK  191 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~  191 (195)
                      .+++|||.|||.++|+++|..+|.+|--.+ ++++..+++
T Consensus        18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~   56 (97)
T 2e5j_A           18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPR   56 (97)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTT
T ss_pred             CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCC
Confidence            378999999999999999999999997665 788765433

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.61  E-value=9.3e-05  Score=52.81  Aligned_cols=36  Identities=19%  Similarity=0.356  Sum_probs=32.4

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceE-EEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE-VRLVp~  188 (195)
                      +.+|||.|||.++|+++|..+|.+|...++ |+|+..
T Consensus        15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~   51 (104)
T 1wg5_A           15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD   51 (104)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC
Confidence            789999999999999999999999987777 888754

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=97.61  E-value=7.2e-05  Score=52.36  Aligned_cols=35  Identities=17%  Similarity=0.289  Sum_probs=33.2

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      +++|||.|||.++|+++|..+|.+|-..++|+++.
T Consensus        27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~   61 (101)
T 2la4_A           27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP   61 (101)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET
T ss_pred             CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec
Confidence            78999999999999999999999999999999983

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.61  E-value=6e-05  Score=52.34  Aligned_cols=36  Identities=11%  Similarity=0.145  Sum_probs=32.4

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|--.++++++..
T Consensus        15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~   50 (98)
T 2cqp_A           15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY   50 (98)
T ss_dssp             SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEE
Confidence            789999999999999999999999988777877754

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=97.60  E-value=7.1e-05  Score=56.53  Aligned_cols=37  Identities=24%  Similarity=0.352  Sum_probs=34.8

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        39 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   75 (156)
T 1h2v_Z           39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK   75 (156)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            8999999999999999999999999999999998654

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=97.60  E-value=5e-05  Score=53.40  Aligned_cols=35  Identities=20%  Similarity=0.264  Sum_probs=33.2

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      .++|||.|||.++|+++|..+|++|--.++|+++.
T Consensus        11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~   45 (89)
T 3d2w_A           11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK   45 (89)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee
Confidence            67999999999999999999999999999999885

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=97.60  E-value=4.3e-05  Score=52.85  Aligned_cols=37  Identities=24%  Similarity=0.423  Sum_probs=33.5

Q ss_pred             CCCCCCceEEecCCCCcccHHHHH----hhccCCCCceEEEee
Q 029297          148 LPPDASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLV  186 (195)
Q Consensus       148 lPPd~N~ILFVQNLP~d~T~~eL~----~LF~qFpGFkEVRLV  186 (195)
                      .+|  +++|||.|||.++|+++|.    .+|.+|...++|+++
T Consensus         5 ~~~--~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~   45 (97)
T 1nu4_A            5 TRP--NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS   45 (97)
T ss_dssp             -CC--CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC
T ss_pred             CCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE
Confidence            345  8999999999999999999    999999999999887

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=97.60  E-value=8.7e-05  Score=56.84  Aligned_cols=35  Identities=23%  Similarity=0.420  Sum_probs=32.4

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCce--EEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYK--EVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFk--EVRLVp~  188 (195)
                      ..+|||.|||.+||+++|..+|.+| +.+  +|+++..
T Consensus        42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d   78 (126)
T 2hgm_A           42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVD   78 (126)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEEC
Confidence            6789999999999999999999999 888  8998854

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=97.59  E-value=8.2e-05  Score=55.82  Aligned_cols=38  Identities=24%  Similarity=0.383  Sum_probs=34.9

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ++++|||.|||.++|+++|..+|.+|.-.++|+++..+
T Consensus        45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~   82 (129)
T 2kxn_B           45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ   82 (129)
T ss_dssp             CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            38899999999999999999999999999999998643

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.59  E-value=5.2e-05  Score=52.33  Aligned_cols=36  Identities=14%  Similarity=0.284  Sum_probs=33.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEE-Eeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEV-RLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|--.++| +++..
T Consensus         5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~   41 (96)
T 1x5t_A            5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD   41 (96)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEc
Confidence            7899999999999999999999999989899 88764

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=97.59  E-value=6e-05  Score=52.79  Aligned_cols=38  Identities=26%  Similarity=0.644  Sum_probs=32.7

Q ss_pred             CCCCCCCceEEecCCCC-cccHHHHHhhccCCCCceEEEee
Q 029297          147 PLPPDASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLV  186 (195)
Q Consensus       147 ~lPPd~N~ILFVQNLP~-d~T~~eL~~LF~qFpGFkEVRLV  186 (195)
                      ..+|  +++|||.|||. ++|+++|..+|.+|-..++|++.
T Consensus         6 ~~~~--~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~   44 (96)
T 2kvi_A            6 NIPP--KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK   44 (96)
T ss_dssp             ---C--CEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE
T ss_pred             cCCC--CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence            3456  89999999998 99999999999999999999884

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=97.59  E-value=3.4e-05  Score=53.18  Aligned_cols=36  Identities=11%  Similarity=0.151  Sum_probs=32.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~   50 (95)
T 2ek1_A           15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY   50 (95)
T ss_dssp             CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEe
Confidence            689999999999999999999999988888888764

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.58  E-value=0.00012  Score=52.68  Aligned_cols=36  Identities=22%  Similarity=0.420  Sum_probs=32.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .++|||.|||.++|+++|..+|.+|- -++|+|+..+
T Consensus        15 ~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~   50 (102)
T 1wez_A           15 GHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP   50 (102)
T ss_dssp             SCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC
Confidence            68999999999999999999999987 6799998654

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=97.57  E-value=5.9e-05  Score=50.96  Aligned_cols=37  Identities=16%  Similarity=0.333  Sum_probs=34.2

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus         4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~   40 (88)
T 4a8x_A            4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER   40 (88)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence            5789999999999999999999999999999998754

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.57  E-value=4e-05  Score=55.73  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=33.1

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      +++|||.|||.++|+++|..+|.+|-..++|+|++
T Consensus        10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~   44 (111)
T 1whx_A           10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE   44 (111)
T ss_dssp             EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence            67999999999999999999999999999999875

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=97.56  E-value=7.5e-05  Score=52.56  Aligned_cols=37  Identities=19%  Similarity=0.424  Sum_probs=34.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~   59 (106)
T 1p27_B           23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR   59 (106)
T ss_dssp             BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecC
Confidence            7899999999999999999999999999999998643

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=97.56  E-value=0.0001  Score=54.05  Aligned_cols=37  Identities=11%  Similarity=0.195  Sum_probs=34.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .++|||.|||.++|+++|..+|.+|--.++|+++-..
T Consensus         6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~   42 (110)
T 3s8s_A            6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHP   42 (110)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECC
Confidence            7899999999999999999999999999999998543

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.56  E-value=4.5e-05  Score=52.54  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=32.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++.
T Consensus         9 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~   43 (90)
T 2dnp_A            9 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK   43 (90)
T ss_dssp             SCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC
Confidence            78999999999999999999999999899999874

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.53  E-value=6.2e-05  Score=52.11  Aligned_cols=35  Identities=9%  Similarity=0.101  Sum_probs=32.0

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      +++|||.|||.++|+++|..+|.+|--.++||.|.
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~   49 (96)
T 2e44_A           15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVN   49 (96)
T ss_dssp             CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEEC
T ss_pred             CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEee
Confidence            78999999999999999999999999999997443

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=97.53  E-value=7.2e-05  Score=53.07  Aligned_cols=38  Identities=21%  Similarity=0.432  Sum_probs=33.4

Q ss_pred             CCCCCCCceEEecCCCC-cccHHHHHhhccCCCCceEEEee
Q 029297          147 PLPPDASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLV  186 (195)
Q Consensus       147 ~lPPd~N~ILFVQNLP~-d~T~~eL~~LF~qFpGFkEVRLV  186 (195)
                      ..|+  +++|||.|||. ++|+++|..+|.+|-..++|++.
T Consensus        18 ~~~~--~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~   56 (97)
T 2xnq_A           18 GSHM--KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK   56 (97)
T ss_dssp             -CCT--TCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC
T ss_pred             CCCC--CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence            3445  89999999998 99999999999999989999883

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.53  E-value=7.1e-05  Score=49.55  Aligned_cols=35  Identities=20%  Similarity=0.361  Sum_probs=32.5

Q ss_pred             eEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +|||.|||.++|+++|..+|++|...++|+++..+
T Consensus         2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~   36 (77)
T 1uaw_A            2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP   36 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCC
Confidence            59999999999999999999999999999998754

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.53  E-value=0.00039  Score=49.55  Aligned_cols=37  Identities=22%  Similarity=0.530  Sum_probs=34.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +.+|||.|||.++|+++|..+|.+|-..++|+++..+
T Consensus        25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~   61 (114)
T 1x5o_A           25 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS   61 (114)
T ss_dssp             TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence            6789999999999999999999999999999998764

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=97.52  E-value=6.7e-05  Score=53.29  Aligned_cols=37  Identities=16%  Similarity=0.345  Sum_probs=34.4

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus        26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   62 (110)
T 1oo0_B           26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR   62 (110)
T ss_dssp             BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence            7899999999999999999999999999999997653

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=97.51  E-value=0.00011  Score=53.83  Aligned_cols=38  Identities=18%  Similarity=0.364  Sum_probs=35.0

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ..++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus         6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   43 (116)
T 2fy1_A            6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR   43 (116)
T ss_dssp             SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence            36899999999999999999999999999999998754

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=97.51  E-value=6.7e-05  Score=56.58  Aligned_cols=37  Identities=14%  Similarity=0.251  Sum_probs=34.4

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~   83 (135)
T 2lea_A           47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR   83 (135)
T ss_dssp             CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence            7899999999999999999999999999999998653

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.51  E-value=7.5e-05  Score=53.65  Aligned_cols=37  Identities=11%  Similarity=0.305  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~   63 (116)
T 1x4b_A           27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDP   63 (116)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence            6899999999999999999999999999999998753

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=97.51  E-value=0.00012  Score=53.27  Aligned_cols=38  Identities=16%  Similarity=0.282  Sum_probs=35.2

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~   71 (124)
T 2kt5_A           34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR   71 (124)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC
Confidence            38899999999999999999999999999999998754

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=97.49  E-value=0.00012  Score=53.36  Aligned_cols=36  Identities=22%  Similarity=0.506  Sum_probs=34.1

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus        63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~   98 (140)
T 2ku7_A           63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD   98 (140)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCC
T ss_pred             CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeec
Confidence            789999999999999999999999999999999865

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=97.48  E-value=0.00011  Score=56.36  Aligned_cols=37  Identities=16%  Similarity=0.345  Sum_probs=34.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|-..++|+++..+
T Consensus        72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~  108 (165)
T 1rk8_A           72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR  108 (165)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecC
Confidence            8899999999999999999999999999999998653

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.48  E-value=0.00013  Score=53.48  Aligned_cols=38  Identities=13%  Similarity=0.229  Sum_probs=33.5

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCC---ceEEEeeecC
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpG---FkEVRLVp~r  189 (195)
                      ...+|||.|||.++|+++|..+|.+|--   .++|+|+..+
T Consensus        16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~   56 (118)
T 2db1_A           16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR   56 (118)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC
Confidence            4789999999999999999999999865   7999998643

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.48  E-value=0.00019  Score=52.58  Aligned_cols=39  Identities=21%  Similarity=0.464  Sum_probs=32.4

Q ss_pred             CCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          149 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       149 PPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      |+....+|||.|||.++|+++|..+|.+|--.+++.++.
T Consensus        21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~   59 (124)
T 1wel_A           21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIA   59 (124)
T ss_dssp             CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEE
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence            344478999999999999999999999998777755554

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=97.47  E-value=5.8e-05  Score=53.67  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=34.4

Q ss_pred             CceEEecCCCC------cccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPA------DSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~------d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.      ++|+++|..+|.+|--.++|+++..+
T Consensus         6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~   48 (100)
T 3ns6_A            6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDE   48 (100)
T ss_dssp             GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEET
T ss_pred             CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcC
Confidence            78999999999      99999999999999999999998654

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.46  E-value=0.0001  Score=54.65  Aligned_cols=36  Identities=19%  Similarity=0.365  Sum_probs=33.0

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ..+|||.|||.++|+++|..+|.+| +-++|+|+..+
T Consensus        16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~   51 (109)
T 2dnn_A           16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH   51 (109)
T ss_dssp             HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC
Confidence            5799999999999999999999999 89999998543

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.46  E-value=0.00019  Score=50.20  Aligned_cols=33  Identities=18%  Similarity=0.288  Sum_probs=29.2

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|   -+|+++..
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~F~~~---g~v~~~~~   47 (101)
T 2fc9_A           15 SKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQN   47 (101)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHCSSC---SEEECCBC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhC---CEEEEEEC
Confidence            8999999999999999999999985   57777654

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=97.43  E-value=0.00013  Score=53.76  Aligned_cols=39  Identities=18%  Similarity=0.366  Sum_probs=35.4

Q ss_pred             CCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       151 d~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +..++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~   78 (139)
T 1u6f_A           40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR   78 (139)
T ss_dssp             TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEET
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence            347899999999999999999999999999999998654

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=97.43  E-value=0.00014  Score=56.60  Aligned_cols=40  Identities=25%  Similarity=0.165  Sum_probs=34.1

Q ss_pred             CCCCCceEE--ecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          149 PPDASSTLY--VEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       149 PPd~N~ILF--VQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ++.+|+||+  |.||+..+|+++|..||++|...++|+++..
T Consensus        22 ~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~   63 (130)
T 3zzy_A           22 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK   63 (130)
T ss_dssp             ---CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE
T ss_pred             cCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC
Confidence            333488887  9999999999999999999999999999864

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=97.43  E-value=0.0002  Score=51.78  Aligned_cols=36  Identities=28%  Similarity=0.477  Sum_probs=34.0

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|.-.++|+++..
T Consensus        26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~   61 (108)
T 2jrs_A           26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD   61 (108)
T ss_dssp             CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc
Confidence            789999999999999999999999999999999865

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=97.42  E-value=0.00019  Score=48.05  Aligned_cols=35  Identities=17%  Similarity=0.346  Sum_probs=32.6

Q ss_pred             ceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      .+|||.|||.++|+++|..+|.+|.-.++|+++..
T Consensus         2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~   36 (83)
T 3md1_A            2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD   36 (83)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEEC
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEc
Confidence            47999999999999999999999999999999865

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=97.41  E-value=0.00016  Score=49.09  Aligned_cols=37  Identities=16%  Similarity=0.288  Sum_probs=33.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|.-.++|+++..+
T Consensus         6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   42 (89)
T 3ucg_A            6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDK   42 (89)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecC
Confidence            5789999999999999999999999999999998653

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.40  E-value=7.6e-05  Score=53.23  Aligned_cols=36  Identities=25%  Similarity=0.476  Sum_probs=33.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|-..++|+++..
T Consensus        25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~   60 (109)
T 1x4g_A           25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE   60 (109)
T ss_dssp             CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence            789999999999999999999999999999999864

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=97.37  E-value=0.00011  Score=51.41  Aligned_cols=37  Identities=22%  Similarity=0.487  Sum_probs=34.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|++|...++|+++..+
T Consensus         9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   45 (102)
T 2xs2_A            9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR   45 (102)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC
Confidence            6899999999999999999999999999999998754

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.37  E-value=9.4e-05  Score=52.28  Aligned_cols=34  Identities=15%  Similarity=0.321  Sum_probs=32.1

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCC-ceEEEee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVG-YKEVRLV  186 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpG-FkEVRLV  186 (195)
                      +++|||.|||.++|+++|..+|.+|-. .++|+++
T Consensus         8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~   42 (109)
T 2dis_A            8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVY   42 (109)
T ss_dssp             SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEE
Confidence            789999999999999999999999965 9999988

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.37  E-value=0.00013  Score=51.21  Aligned_cols=38  Identities=16%  Similarity=0.206  Sum_probs=34.7

Q ss_pred             CceEEecCCCCcccHHHHH----hhccCCCCceEEEeeecCc
Q 029297          153 SSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKES  190 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~----~LF~qFpGFkEVRLVp~r~  190 (195)
                      ++.|||.|||.++|+++|.    .+|.+|--.++|+++..+.
T Consensus         9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~   50 (96)
T 2dgx_A            9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD   50 (96)
T ss_dssp             CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC
Confidence            7899999999999999999    9999999999999986543

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=97.36  E-value=0.00013  Score=50.51  Aligned_cols=36  Identities=14%  Similarity=0.236  Sum_probs=31.9

Q ss_pred             ceEEecCCCCcccHHHHHhhccCCC--CceEEEeeecC
Q 029297          154 STLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKE  189 (195)
Q Consensus       154 ~ILFVQNLP~d~T~~eL~~LF~qFp--GFkEVRLVp~r  189 (195)
                      .+|||.|||.++|+++|..+|.+|.  ..++|+++..+
T Consensus         2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~   39 (90)
T 3p5t_L            2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR   39 (90)
T ss_dssp             --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECT
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecC
Confidence            4699999999999999999999998  89999998754

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=97.36  E-value=7.9e-05  Score=59.43  Aligned_cols=41  Identities=17%  Similarity=0.263  Sum_probs=36.7

Q ss_pred             CCCCCCCceEEecCCCC-cccHHHHHhhccCCCCceEEEeeecC
Q 029297          147 PLPPDASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       147 ~lPPd~N~ILFVQNLP~-d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ..++  +++|||.|||. ++|+++|..+|.+|-..++|+++..+
T Consensus        30 ~~~~--~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~   71 (229)
T 2adc_A           30 AGAG--NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK   71 (229)
T ss_dssp             GCCC--CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT
T ss_pred             CCCC--CCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC
Confidence            3455  89999999999 99999999999999999999998754

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.35  E-value=0.00012  Score=51.17  Aligned_cols=37  Identities=22%  Similarity=0.398  Sum_probs=34.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus         8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~   44 (104)
T 1p1t_A            8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR   44 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEET
T ss_pred             ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCC
Confidence            6899999999999999999999999999999998653

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.35  E-value=0.00016  Score=52.50  Aligned_cols=36  Identities=14%  Similarity=0.350  Sum_probs=33.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|--..+|+|+..
T Consensus        11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d   46 (103)
T 1s79_A           11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT   46 (103)
T ss_dssp             GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEEC
Confidence            689999999999999999999999999999999864

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.33  E-value=0.0002  Score=51.83  Aligned_cols=36  Identities=33%  Similarity=0.477  Sum_probs=31.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ++.|||.|||.++|+++|..+|.+|--.+ ++++..+
T Consensus         8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~   43 (114)
T 2dnl_A            8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKA   43 (114)
T ss_dssp             CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSS
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecC
Confidence            67899999999999999999999997776 7777543

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.32  E-value=0.00015  Score=52.25  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHH---hhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVA---HIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~---~LF~qFpGFkEVRLVp~r  189 (195)
                      .++|||.|||.++|+++|.   .+|.+|--.++|+++..+
T Consensus        15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~   54 (111)
T 2cpi_A           15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST   54 (111)
T ss_dssp             SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCC
Confidence            7899999999999999999   999999999999998654

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=97.32  E-value=0.0002  Score=51.24  Aligned_cols=38  Identities=16%  Similarity=0.254  Sum_probs=33.1

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCC---ceEEEeeecC
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpG---FkEVRLVp~r  189 (195)
                      ...+|||.|||.++|+++|..+|.+|--   .++|+++..+
T Consensus        10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~   50 (107)
T 2lmi_A           10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR   50 (107)
T ss_dssp             SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC
Confidence            4789999999999999999999999644   7899998643

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=97.29  E-value=0.00014  Score=50.31  Aligned_cols=31  Identities=32%  Similarity=0.480  Sum_probs=28.2

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV  186 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV  186 (195)
                      +++|||.|||.++|+++|..+|.+|   -+|++|
T Consensus        16 ~~~l~V~nL~~~~t~~~l~~~F~~~---g~v~~~   46 (96)
T 1fjc_A           16 ARTLLAKNLSFNITEDELKEVFEDA---LEIRLV   46 (96)
T ss_dssp             GGEEEEESCCSSCCHHHHHHHHCSE---EEECCE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhC---CcEEEe
Confidence            7899999999999999999999985   677777

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=97.28  E-value=0.00017  Score=52.19  Aligned_cols=36  Identities=14%  Similarity=0.290  Sum_probs=33.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus        36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~   71 (124)
T 2jwn_A           36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCD   71 (124)
T ss_dssp             HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence            689999999999999999999999999999999864

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=97.28  E-value=8.2e-05  Score=54.27  Aligned_cols=35  Identities=14%  Similarity=0.175  Sum_probs=31.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      ++.|||.|||.++|+++|..+|.+|--.++|+++.
T Consensus        16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~   50 (115)
T 3beg_B           16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR   50 (115)
T ss_dssp             -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec
Confidence            68899999999999999999999998889998864

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=97.27  E-value=0.00011  Score=55.15  Aligned_cols=36  Identities=19%  Similarity=0.324  Sum_probs=34.0

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus        73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~  108 (150)
T 2i2y_A           73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN  108 (150)
T ss_dssp             SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC
Confidence            789999999999999999999999999999999864

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=97.24  E-value=0.00026  Score=54.75  Aligned_cols=36  Identities=22%  Similarity=0.425  Sum_probs=32.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .++|||.|||.++|+++|..+|.+|- -++|+++..+
T Consensus        46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~   81 (139)
T 2hgn_A           46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP   81 (139)
T ss_dssp             CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC
Confidence            67999999999999999999999997 7899998543

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=97.23  E-value=0.00014  Score=48.04  Aligned_cols=34  Identities=21%  Similarity=0.486  Sum_probs=31.4

Q ss_pred             eEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +|||.|||.++|+++|..+|++|.-.++|+++..
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~   34 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD   34 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCS
T ss_pred             CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence            4899999999999999999999999999998764

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=97.23  E-value=0.00019  Score=47.51  Aligned_cols=34  Identities=26%  Similarity=0.551  Sum_probs=31.6

Q ss_pred             EEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      |||.|||.++|+++|..+|++|.-.++|+++..+
T Consensus         2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   35 (75)
T 2mss_A            2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK   35 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCS
T ss_pred             EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence            8999999999999999999999999999988654

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=97.23  E-value=0.00027  Score=55.86  Aligned_cols=38  Identities=16%  Similarity=0.282  Sum_probs=35.1

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .+.+|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus        87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~  124 (177)
T 2f3j_A           87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR  124 (177)
T ss_dssp             TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence            48999999999999999999999999999999998754

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=97.20  E-value=0.00015  Score=49.04  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=30.0

Q ss_pred             CceEEecCCCCcccHHHHHhhccCC----C-------CceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qF----p-------GFkEVRLVp  187 (195)
                      +++|||.|||.++|+++|..+|++|    -       -.++|++..
T Consensus         6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~   51 (87)
T 2hzc_A            6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ   51 (87)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC
Confidence            7899999999999999999999998    3       366677653

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.20  E-value=0.0002  Score=49.35  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=28.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCC-ceEEEe
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVG-YKEVRL  185 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpG-FkEVRL  185 (195)
                      ++.|||.|||.++|+++|..+|.+|-. .+.+.+
T Consensus         8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~   41 (93)
T 2cqh_A            8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL   41 (93)
T ss_dssp             CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE
Confidence            789999999999999999999999987 444444

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=97.18  E-value=0.00047  Score=51.94  Aligned_cols=37  Identities=11%  Similarity=0.383  Sum_probs=34.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus       104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~  140 (196)
T 1l3k_A          104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR  140 (196)
T ss_dssp             CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred             cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence            6899999999999999999999999999999998754

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=97.18  E-value=0.00039  Score=53.47  Aligned_cols=37  Identities=14%  Similarity=0.221  Sum_probs=33.0

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCC---ceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpG---FkEVRLVp~r  189 (195)
                      ..+|||.|||.++|+++|..+|.+|--   .++|+++..+
T Consensus        44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~   83 (136)
T 2hgl_A           44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR   83 (136)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC
Confidence            679999999999999999999999966   7899998543

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=97.15  E-value=0.0002  Score=50.06  Aligned_cols=34  Identities=21%  Similarity=0.323  Sum_probs=32.0

Q ss_pred             eEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +|||.|||.++|+++|..+|.+|.-.++|+++..
T Consensus         2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~   35 (101)
T 2hvz_A            2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN   35 (101)
T ss_dssp             EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence            6999999999999999999999999999999865

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=97.15  E-value=0.00033  Score=52.52  Aligned_cols=36  Identities=14%  Similarity=0.254  Sum_probs=34.1

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +.+|||.|||.++|+++|..+|.+|.-.++|+++..
T Consensus        70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~  105 (158)
T 2kn4_A           70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD  105 (158)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec
Confidence            789999999999999999999999999999999865

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.15  E-value=0.00024  Score=53.82  Aligned_cols=37  Identities=22%  Similarity=0.300  Sum_probs=32.6

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCC----ceEEEeeec
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVG----YKEVRLVIK  188 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpG----FkEVRLVp~  188 (195)
                      ...+|||.|||.+||+++|..+|.+|-.    .++|+|+..
T Consensus        22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d   62 (123)
T 2dha_A           22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY   62 (123)
T ss_dssp             SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC
Confidence            3789999999999999999999999964    478999864

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=97.13  E-value=0.00056  Score=55.62  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=33.0

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      +++|||.|||.++|+++|..+|.+|.-.++|+++.
T Consensus        22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~   56 (261)
T 3sde_A           22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR   56 (261)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence            78999999999999999999999999999999864

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.12  E-value=0.00057  Score=47.41  Aligned_cols=31  Identities=19%  Similarity=0.404  Sum_probs=29.0

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEE
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV  183 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEV  183 (195)
                      .+.|||.|||.++|+++|..+|.+|--.++|
T Consensus         8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v   38 (94)
T 2e5g_A            8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV   38 (94)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE
Confidence            6799999999999999999999999888877

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=97.09  E-value=0.00065  Score=51.94  Aligned_cols=37  Identities=19%  Similarity=0.362  Sum_probs=34.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|...++|+++...
T Consensus       125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~  161 (216)
T 2qfj_A          125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDP  161 (216)
T ss_dssp             SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECT
T ss_pred             CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecC
Confidence            6899999999999999999999999999999998753

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.0011  Score=48.05  Aligned_cols=36  Identities=17%  Similarity=0.350  Sum_probs=34.2

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|++|...++|+++..
T Consensus        87 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~  122 (166)
T 3md3_A           87 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD  122 (166)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEEC
T ss_pred             CceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEec
Confidence            789999999999999999999999999999999865

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=97.06  E-value=0.00012  Score=50.05  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=33.0

Q ss_pred             ceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +.|||.|||.++|+++|..+|++|-..++|+++..+
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   37 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDR   37 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCS
T ss_pred             cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcC
Confidence            479999999999999999999999999999998653

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=97.05  E-value=0.00094  Score=48.92  Aligned_cols=37  Identities=22%  Similarity=0.417  Sum_probs=34.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|++|...++|+++..+
T Consensus        89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~  125 (168)
T 1b7f_A           89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK  125 (168)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT
T ss_pred             CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcC
Confidence            7899999999999999999999999999999998754

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=97.05  E-value=0.00038  Score=53.18  Aligned_cols=39  Identities=23%  Similarity=0.432  Sum_probs=34.7

Q ss_pred             CCCCCCceEEecCCCCcccHHHHHhhccCCC-CceEEEeeec
Q 029297          148 LPPDASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIK  188 (195)
Q Consensus       148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFp-GFkEVRLVp~  188 (195)
                      .||  +++|||.|||.++|+++|..+|.+|- -.++|++++.
T Consensus       117 ~~~--~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~  156 (198)
T 1qm9_A          117 FPP--SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK  156 (198)
T ss_dssp             CCC--CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred             CCC--ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence            456  89999999999999999999999995 5689999874

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=97.04  E-value=0.00042  Score=50.97  Aligned_cols=37  Identities=16%  Similarity=0.368  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ++.|||.|||.++|+++|..+|++|...++|+++..+
T Consensus        95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~  131 (175)
T 3nmr_A           95 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP  131 (175)
T ss_dssp             GSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC
Confidence            7899999999999999999999999999999998753

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=97.03  E-value=0.00034  Score=56.61  Aligned_cols=38  Identities=24%  Similarity=0.208  Sum_probs=33.4

Q ss_pred             Cce--EEecCCCCcccHHHHHhhccCCCCceEEEeeecCc
Q 029297          153 SST--LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES  190 (195)
Q Consensus       153 N~I--LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~  190 (195)
                      +++  |||.|||..+|+++|..+|++|--.++|+++.+++
T Consensus        44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~   83 (164)
T 1sjr_A           44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN   83 (164)
T ss_dssp             CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSS
T ss_pred             CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCC
Confidence            554  67999999999999999999999999999986553

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=97.01  E-value=0.00087  Score=49.45  Aligned_cols=37  Identities=24%  Similarity=0.433  Sum_probs=34.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .++|||.|||.++|+++|..+|++|...++|+++...
T Consensus        94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~  130 (172)
T 2g4b_A           94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS  130 (172)
T ss_dssp             TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT
T ss_pred             CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC
Confidence            7899999999999999999999999999999998763

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=96.99  E-value=0.0004  Score=62.41  Aligned_cols=37  Identities=24%  Similarity=0.365  Sum_probs=34.4

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ++++|||.|||.+||+++|..+|.+|.-.++|+|+..
T Consensus       101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d  137 (437)
T 3pgw_S          101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYS  137 (437)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeecc
Confidence            3789999999999999999999999999999999854

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=96.98  E-value=0.00056  Score=54.60  Aligned_cols=36  Identities=14%  Similarity=0.350  Sum_probs=33.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|...++||++..
T Consensus       109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~  144 (193)
T 2voo_A          109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT  144 (193)
T ss_dssp             HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC
T ss_pred             cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEEC
Confidence            589999999999999999999999999999999864

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=96.98  E-value=0.00051  Score=53.37  Aligned_cols=36  Identities=14%  Similarity=0.280  Sum_probs=32.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCC--CceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFp--GFkEVRLVp~  188 (195)
                      ...|||.|||.++|+++|..+|.+|-  -.++|+++..
T Consensus        55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d   92 (156)
T 3n9u_C           55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAEN   92 (156)
T ss_dssp             -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEec
Confidence            57999999999999999999999998  8999999865

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=96.97  E-value=0.00098  Score=50.27  Aligned_cols=39  Identities=26%  Similarity=0.460  Sum_probs=35.5

Q ss_pred             CCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       151 d~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ..+++|||.|||.++|+++|..+|.+|...++|+++...
T Consensus       112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~  150 (198)
T 2yh0_A          112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS  150 (198)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC
Confidence            348899999999999999999999999999999998653

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=96.97  E-value=0.00036  Score=52.01  Aligned_cols=38  Identities=8%  Similarity=0.129  Sum_probs=32.1

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCC-CceEEEeeecC
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFp-GFkEVRLVp~r  189 (195)
                      .+..|||.|||.++|+++|..+|++|- -.+.|+++..+
T Consensus        27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~   65 (111)
T 2jvr_A           27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD   65 (111)
T ss_dssp             CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC
Confidence            377999999999999999999999996 57777776433

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=96.95  E-value=0.00063  Score=54.15  Aligned_cols=39  Identities=23%  Similarity=0.432  Sum_probs=34.3

Q ss_pred             CCCCCCceEEecCCCCcccHHHHHhhccCCC-CceEEEeeec
Q 029297          148 LPPDASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIK  188 (195)
Q Consensus       148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFp-GFkEVRLVp~  188 (195)
                      .+|  +++|||.|||.++|+++|..+|.+|- -.++|++++.
T Consensus       148 ~~~--~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~  187 (229)
T 2adc_A          148 FPP--SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK  187 (229)
T ss_dssp             CCS--CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS
T ss_pred             CCC--CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC
Confidence            455  89999999999999999999999995 5688999873

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=95.99  E-value=0.00013  Score=52.51  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=32.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceE--------EEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE--------VRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|--.++        |+++..
T Consensus         7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~   50 (116)
T 2lcw_A            7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD   50 (116)
Confidence            789999999999999999999999988887        787754

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=96.93  E-value=0.00085  Score=49.95  Aligned_cols=31  Identities=32%  Similarity=0.482  Sum_probs=28.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV  186 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV  186 (195)
                      +++|||.|||.++|+++|..+|++   |.+|++|
T Consensus        99 ~~~l~v~nlp~~~t~~~l~~~F~~---~g~v~~~  129 (175)
T 1fje_B           99 ARTLLAKNLSFNITEDELKEVFED---ALEIRLV  129 (175)
T ss_dssp             GGEEEEESCCSSCCHHHHHHHCTT---CSEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHh---cCeEEEe
Confidence            789999999999999999999998   4688888

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=96.92  E-value=0.0005  Score=54.19  Aligned_cols=39  Identities=13%  Similarity=0.312  Sum_probs=35.1

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCcc
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK  191 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~  191 (195)
                      .+.|||.|||.++|+++|..+|++|...++|+++..+.+
T Consensus       103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~  141 (213)
T 4f02_A          103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG  141 (213)
T ss_dssp             TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE
T ss_pred             cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC
Confidence            568999999999999999999999999999999865443

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=96.87  E-value=0.00051  Score=47.98  Aligned_cols=31  Identities=10%  Similarity=0.237  Sum_probs=26.8

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceE
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE  182 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE  182 (195)
                      .+.+|||.|||.++|+++|..+|.+|-..++
T Consensus        16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~   46 (101)
T 1fj7_A           16 TPFNLFIGNLNPNKSVAELKVAISELFAKND   46 (101)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce
Confidence            3789999999999999999999998754444

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=96.86  E-value=0.00099  Score=48.43  Aligned_cols=37  Identities=27%  Similarity=0.614  Sum_probs=34.4

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ++.|||.|||.++|+++|..+|++|...++|+++..+
T Consensus        88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~  124 (167)
T 1fxl_A           88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ  124 (167)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecC
Confidence            6789999999999999999999999999999998654

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=96.82  E-value=0.00044  Score=51.43  Aligned_cols=32  Identities=19%  Similarity=0.490  Sum_probs=28.9

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEE
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEV  183 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEV  183 (195)
                      ++++|||.|||.++|+++|..+|.+|...++|
T Consensus        44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~   75 (143)
T 3egn_A           44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSE   75 (143)
T ss_dssp             CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCH
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccc
Confidence            38999999999999999999999999877663

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.79  E-value=0.0023  Score=44.53  Aligned_cols=32  Identities=31%  Similarity=0.430  Sum_probs=29.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV  186 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV  186 (195)
                      +++|||.||  ++|+++|..+|.+|--.++|++.
T Consensus        15 ~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~   46 (97)
T 1x5p_A           15 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD   46 (97)
T ss_dssp             CSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE
T ss_pred             CCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec
Confidence            889999997  89999999999999999999985

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=96.77  E-value=0.00089  Score=51.17  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=33.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|--.++|+++...
T Consensus        28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~   64 (216)
T 2qfj_A           28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS   64 (216)
T ss_dssp             HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecC
Confidence            7899999999999999999999999989999998643

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=96.77  E-value=0.0012  Score=54.14  Aligned_cols=37  Identities=14%  Similarity=0.228  Sum_probs=33.2

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCC--CceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFp--GFkEVRLVp~r  189 (195)
                      ...|||.|||.++|+++|..+|.+|-  -.++|+|+..+
T Consensus        68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~  106 (229)
T 3q2s_C           68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR  106 (229)
T ss_dssp             -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECT
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecC
Confidence            56799999999999999999999998  89999998653

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=96.75  E-value=0.00075  Score=54.72  Aligned_cols=39  Identities=21%  Similarity=0.219  Sum_probs=34.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCcc
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK  191 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~  191 (195)
                      +.+|||.|||.++|+++|..+|.+|.-.++|+++.....
T Consensus        41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~   79 (292)
T 2ghp_A           41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK   79 (292)
T ss_dssp             -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC
Confidence            889999999999999999999999999999999985433

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=96.74  E-value=0.0014  Score=49.81  Aligned_cols=38  Identities=8%  Similarity=0.183  Sum_probs=32.4

Q ss_pred             CCCCCCceEEecCCCCcccHHHHH----hhccCCCCceEEEeee
Q 029297          148 LPPDASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVI  187 (195)
Q Consensus       148 lPPd~N~ILFVQNLP~d~T~~eL~----~LF~qFpGFkEVRLVp  187 (195)
                      .+|  +++|||.|||.++|+++|.    .+|++|--..+|++..
T Consensus        26 ~~p--~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~   67 (127)
T 2a3j_A           26 TEP--SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL   67 (127)
T ss_dssp             CSC--CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred             CCC--CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc
Confidence            455  8999999999999998765    7999999899998753

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=96.62  E-value=0.001  Score=48.83  Aligned_cols=37  Identities=16%  Similarity=0.440  Sum_probs=34.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ++.|||.|||.++|+++|..+|++|...++|+++..+
T Consensus        87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~  123 (167)
T 2cjk_A           87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK  123 (167)
T ss_dssp             CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred             CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence            7799999999999999999999999999999998653

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=96.42  E-value=0.0028  Score=51.11  Aligned_cols=32  Identities=25%  Similarity=0.480  Sum_probs=29.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEe
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRL  185 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRL  185 (195)
                      +++|||.|||.++|+++|..+|.+|. .++|++
T Consensus        22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~   53 (284)
T 3smz_A           22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV   53 (284)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE
Confidence            78999999999999999999999995 888887

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=96.33  E-value=0.0053  Score=49.50  Aligned_cols=37  Identities=16%  Similarity=0.199  Sum_probs=33.9

Q ss_pred             CceEEecCCCCc-ccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d-~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.+ +|+++|..+|.+|...++|+++..+
T Consensus       184 ~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~  221 (284)
T 3smz_A          184 SRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ  221 (284)
T ss_dssp             CSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS
T ss_pred             ccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC
Confidence            789999999999 5999999999999999999988753

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.31  E-value=0.0014  Score=49.89  Aligned_cols=36  Identities=11%  Similarity=0.158  Sum_probs=32.6

Q ss_pred             CceEEe--cCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYV--EGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFV--QNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ++.|||  -||+.++|+++|..+|.+|--.++|++++.
T Consensus        25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~   62 (114)
T 2cq2_A           25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN   62 (114)
T ss_dssp             CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT
T ss_pred             CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence            889999  669999999999999999998899988753

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=96.27  E-value=0.003  Score=53.52  Aligned_cols=36  Identities=22%  Similarity=0.413  Sum_probs=33.8

Q ss_pred             CceEEecCCCCcc---------cHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADS---------TKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~---------T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++         |+++|..+|.+|--.++|+++..
T Consensus       134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~  178 (240)
T 3u1l_A          134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES  178 (240)
T ss_dssp             CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG
T ss_pred             CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC
Confidence            8999999999998         89999999999999999999864

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.19  E-value=0.0035  Score=47.46  Aligned_cols=30  Identities=23%  Similarity=0.279  Sum_probs=25.3

Q ss_pred             CCCCCCCce-EEecCCCCcccHHH----HHhhccCCC
Q 029297          147 PLPPDASST-LYVEGLPADSTKRE----VAHIFRPFV  178 (195)
Q Consensus       147 ~lPPd~N~I-LFVQNLP~d~T~~e----L~~LF~qFp  178 (195)
                      ..||  |++ |||.|||.++++++    |..||.+|-
T Consensus         4 ~~~p--~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG   38 (96)
T 2diu_A            4 GSSG--CHTLLYVYNLPANKDGKSVSNRLRRLSDNCG   38 (96)
T ss_dssp             SCCC--SSEEEEEESCCTTSCHHHHHHHHHHHHHTTT
T ss_pred             CCCC--cceEEEEeCCCCcCCHHHHHHHHHHHHHHcC
Confidence            3567  888 77999999999887    568999995

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.08  E-value=0.0061  Score=47.11  Aligned_cols=43  Identities=16%  Similarity=0.132  Sum_probs=37.2

Q ss_pred             CCCCCCCCceEEecCCCCc-ccHHHHHhhccCCCCceEEEeeecCc
Q 029297          146 LPLPPDASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKES  190 (195)
Q Consensus       146 ~~lPPd~N~ILFVQNLP~d-~T~~eL~~LF~qFpGFkEVRLVp~r~  190 (195)
                      ..+|+  +-||+|.||+.+ ||+++|..+|++|.-.+.|.++....
T Consensus        13 ~~~~~--G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~   56 (121)
T 1owx_A           13 LEEKI--GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK   56 (121)
T ss_dssp             CSCCC--CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS
T ss_pred             ccccC--CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC
Confidence            45778  999999999999 99999999999998888887776543

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=96.00  E-value=0.0037  Score=50.59  Aligned_cols=37  Identities=8%  Similarity=0.240  Sum_probs=34.5

Q ss_pred             CceEEecCCCCc-ccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d-~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.+ +|+++|..+|.+|...+.|+++...
T Consensus       210 ~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~  247 (292)
T 2ghp_A          210 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQ  247 (292)
T ss_dssp             TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCC
T ss_pred             CceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecC
Confidence            789999999999 9999999999999999999998743

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=95.92  E-value=0.0061  Score=49.48  Aligned_cols=36  Identities=17%  Similarity=0.270  Sum_probs=33.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|.+|.-.++|+++..
T Consensus        96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~  131 (261)
T 3sde_A           96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD  131 (261)
T ss_dssp             SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred             CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC
Confidence            678999999999999999999999999999999865

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=95.16  E-value=0.007  Score=45.00  Aligned_cols=35  Identities=14%  Similarity=0.063  Sum_probs=32.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      +.-|||.||+..+|+++|..||.+|--.++++++.
T Consensus         7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~   41 (89)
T 2wbr_A            7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL   41 (89)
T ss_dssp             CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET
T ss_pred             cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC
Confidence            55689999999999999999999999999999976

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=94.98  E-value=0.018  Score=51.04  Aligned_cols=36  Identities=8%  Similarity=0.108  Sum_probs=32.5

Q ss_pred             CceEEecC--CCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEG--LPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQN--LP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||-|  |+.++|+++|..+|.+|---++|++.+.
T Consensus        18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~   55 (345)
T 3tht_A           18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN   55 (345)
T ss_dssp             CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT
T ss_pred             CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence            89999999  5789999999999999988899998763

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=93.32  E-value=0.1  Score=40.03  Aligned_cols=37  Identities=16%  Similarity=0.336  Sum_probs=30.9

Q ss_pred             CCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          149 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       149 PPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      -|...|+|+| +.|.++...+|..||++|- -..|+.|.
T Consensus        12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~Wid   48 (100)
T 1whv_A           12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWID   48 (100)
T ss_dssp             CCCCCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEE
T ss_pred             CCCCCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEc
Confidence            3456899999 9999999999999999996 45566664

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.60  E-value=0.26  Score=35.25  Aligned_cols=34  Identities=12%  Similarity=0.267  Sum_probs=28.1

Q ss_pred             CceEEecCC--CCcc---------cHHHHHhhccCCCCceEEEee
Q 029297          153 SSTLYVEGL--PADS---------TKREVAHIFRPFVGYKEVRLV  186 (195)
Q Consensus       153 N~ILFVQNL--P~d~---------T~~eL~~LF~qFpGFkEVRLV  186 (195)
                      +++|+|.||  |.++         ++++|..+|.+|--.++|.+.
T Consensus        15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~   59 (112)
T 2dit_A           15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF   59 (112)
T ss_dssp             CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE
T ss_pred             ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe
Confidence            899999999  4332         368999999999999999653

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.48  E-value=0.27  Score=35.80  Aligned_cols=34  Identities=9%  Similarity=0.074  Sum_probs=27.5

Q ss_pred             CceEEecCCC-------CcccHHHHHhhccCCCCceEEEee
Q 029297          153 SSTLYVEGLP-------ADSTKREVAHIFRPFVGYKEVRLV  186 (195)
Q Consensus       153 N~ILFVQNLP-------~d~T~~eL~~LF~qFpGFkEVRLV  186 (195)
                      .+.|.|.-..       .++|+++|..+|.+|-..++|+++
T Consensus        10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~   50 (100)
T 2d9o_A           10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS   50 (100)
T ss_dssp             SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE
T ss_pred             cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc
Confidence            3455555544       568999999999999999999998

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=90.25  E-value=0.15  Score=39.08  Aligned_cols=33  Identities=15%  Similarity=0.302  Sum_probs=29.1

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      .|+|+| +.|.++...+|..||++|- -..|+.|.
T Consensus         6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~Wid   38 (101)
T 3ctr_A            6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWID   38 (101)
T ss_dssp             EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEE
T ss_pred             CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEc
Confidence            689999 9999999999999999995 56677765

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=88.16  E-value=0.52  Score=34.15  Aligned_cols=37  Identities=3%  Similarity=0.044  Sum_probs=30.9

Q ss_pred             CCceEEecCCCC-----cccHHHHHhhccCCCCceEEEeeec
Q 029297          152 ASSTLYVEGLPA-----DSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       152 ~N~ILFVQNLP~-----d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ++++|+|.||..     +-++++|..+|++|---++|+++..
T Consensus         7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~   48 (105)
T 2pe8_A            7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI   48 (105)
T ss_dssp             CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEEC
T ss_pred             CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecC
Confidence            389999999973     3378999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	195
d2f9da1	114	d.58.7.1 (A:12-125) Pre-mRNA branch site protein p	5e-04
d2cqca1	83	d.58.7.1 (A:109-191) Arginine/serine-rich splicing	6e-04
d1x4ga1	96	d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s	0.001
d2cpha1	94	d.58.7.1 (A:454-547) Probable RNA-binding protein	0.002

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 5e-04
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKE 182
           LPP+ +  LY+  LP   T  E+  IF  +   ++
Sbjct: 2   LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ 36

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 6e-04
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKE 182
           PD +  L V GL   +T+R++  +F  +    +
Sbjct: 6   PDPNCCLGVFGLSLYTTERDLREVFSKYGPIAD 38

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 132 QLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186
           QL F+       + +      + T+Y  G+ +  T + +   F PF    E+R+ 
Sbjct: 4   QLRFE-------DVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF 51

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188
              +S + V  +P  + +RE+  +F  F   K VRL  K
Sbjct: 5   KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKK 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	98.72
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	98.4
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	98.23
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	98.18
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	98.18
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	98.16
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	98.13
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	98.09
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	97.98
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	97.97
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	97.95
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	97.9
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	97.88
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	97.84
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	97.8
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.77
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	97.77
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	97.77
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	97.77
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.76
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	97.76
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	97.75
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.74
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	97.74
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	97.72
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	97.72
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	97.71
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	97.7
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	97.7
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	97.68
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	97.65
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	97.64
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	97.64
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	97.63
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	97.62
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	97.6
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	97.57
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.57
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	97.56
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	97.56
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	97.55
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	97.54
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	97.54
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	97.53
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	97.52
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	97.52
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	97.51
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	97.5
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	97.49
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	97.49
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	97.49
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	97.48
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	97.48
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	97.47
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	97.45
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	97.45
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	97.4
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	97.38
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	97.38
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	97.37
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	97.37
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	97.32
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	97.31
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	97.3
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	97.25
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	97.23
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	97.23
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	97.22
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	97.1
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	97.09
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	97.03
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	97.02
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	96.93
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	96.85
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	96.82
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	96.82
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	96.81
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	96.79
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	96.66
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	96.45
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	96.23
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	96.05
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	83.6
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	82.86

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.72  E-value=6e-09  Score=71.51  Aligned_cols=42  Identities=33%  Similarity=0.687  Sum_probs=38.6

Q ss_pred             CCCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          146 LPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       146 ~~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ...||  |+||||.|||.++|+++|..+|++|...++||+++.+
T Consensus         3 ~~~pP--~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~   44 (83)
T d2b0ga1           3 TEQPP--NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNR   44 (83)
T ss_dssp             CCCSC--CSEEEEESCCTTCCHHHHHHHHTTSTTEEEEEECTTT
T ss_pred             CCCCC--CCEEEEECCCCCCCHHHHHhhhccCccEEEeeeeccc
Confidence            45688  9999999999999999999999999999999998754

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.6e-07  Score=64.53  Aligned_cols=42  Identities=19%  Similarity=0.395  Sum_probs=38.3

Q ss_pred             CCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCcc
Q 029297          148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK  191 (195)
Q Consensus       148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~  191 (195)
                      .||  +++|||.|||.++|+++|..+|++|....+++++..+.+
T Consensus         7 ~pP--s~tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~   48 (88)
T d2adca2           7 FPP--SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR   48 (88)
T ss_dssp             CCS--CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSST
T ss_pred             CCC--CCEEEEECCCCCCCHHHHHHHhhccCCEEEEEEeeeccc
Confidence            478  999999999999999999999999999999998876654

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=5.1e-07  Score=64.26  Aligned_cols=40  Identities=30%  Similarity=0.572  Sum_probs=36.9

Q ss_pred             CCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      +||.+|++|||.|||.++|+++|..+|.+|--.++||+..
T Consensus         2 ~pp~~~r~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~~   41 (114)
T d2f9da1           2 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN   41 (114)
T ss_dssp             CCTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC
T ss_pred             cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCeEeecccc
Confidence            5677799999999999999999999999999999999874

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=1.1e-06  Score=62.35  Aligned_cols=41  Identities=15%  Similarity=0.142  Sum_probs=37.1

Q ss_pred             CCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ..+|  +++|||.|||.++|+++|..+|.+|-..++|++.+.+
T Consensus        11 ~~~p--s~~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~~~~k   51 (104)
T d1wexa_          11 KVSV--SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK   51 (104)
T ss_dssp             CCCC--CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTT
T ss_pred             cCCC--CCEEEEeCCCCCCCHHHHHHhhhhcccceEEEEEecc
Confidence            4566  9999999999999999999999999999999998643

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1e-06  Score=60.53  Aligned_cols=41  Identities=24%  Similarity=0.332  Sum_probs=37.0

Q ss_pred             CCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ..+|  +++|||.|||.++|+++|..+|++|...++|++++.+
T Consensus         4 ~~~P--s~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~~   44 (88)
T d2cq1a1           4 DGAP--SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGK   44 (88)
T ss_dssp             CSSC--CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTT
T ss_pred             CCCC--CCEEEEeCCCCCCCHHHHHHHHhcccccccccccccc
Confidence            3467  9999999999999999999999999999999998643

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.4e-06  Score=61.08  Aligned_cols=40  Identities=28%  Similarity=0.468  Sum_probs=34.4

Q ss_pred             CCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          149 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       149 PPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      |.++..+|||.|||.++|+++|..+|++| |-++++++...
T Consensus        11 p~~p~~~v~V~nLp~~~te~~l~~~f~~~-g~~~~~~~~~~   50 (104)
T d1wi8a_          11 PKSPPYTAFLGNLPYDVTEESIKEFFRGL-NISAVRLPREP   50 (104)
T ss_dssp             CSSSCEEEEEESCCSSCCHHHHHHHTTTS-CEEEEECCBCS
T ss_pred             CCCCCCEEEEeCCCCcCCHHHHHHHHHHh-ccccceeeeee
Confidence            33336899999999999999999999999 78899988654

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=8.9e-07  Score=62.09  Aligned_cols=37  Identities=22%  Similarity=0.389  Sum_probs=34.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.+||+++|.++|++|...++|++++.+
T Consensus        17 s~tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~   53 (97)
T d1whya_          17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGD   53 (97)
T ss_dssp             CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSS
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhhcccceEeeeccc
Confidence            8899999999999999999999999999999998654

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.5e-06  Score=58.92  Aligned_cols=38  Identities=24%  Similarity=0.383  Sum_probs=34.9

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ++++|||.|||.++|+++|..+|++|.-.++|+++..+
T Consensus         8 ~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~~   45 (83)
T d2cqca1           8 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ   45 (83)
T ss_dssp             GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCCccccccccc
Confidence            38899999999999999999999999999999998643

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.98  E-value=2.7e-06  Score=57.15  Aligned_cols=36  Identities=31%  Similarity=0.458  Sum_probs=33.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      |..|||.|||.++|+++|..+|++|-..++|+++..
T Consensus         2 ~t~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~   37 (82)
T d1b7fa1           2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRD   37 (82)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeee
Confidence            667999999999999999999999999999999853

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3.1e-06  Score=58.33  Aligned_cols=41  Identities=22%  Similarity=0.323  Sum_probs=36.4

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCccCC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLL  193 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~  193 (195)
                      +++|||.|||.++|+++|..+|++|--.+.|+++..+.+..
T Consensus         8 ~~tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~   48 (90)
T d2cqia1           8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSND   48 (90)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhcCCceeeeeecccCccc
Confidence            68999999999999999999999998889999987655543

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=4.7e-06  Score=57.32  Aligned_cols=42  Identities=12%  Similarity=0.260  Sum_probs=37.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCccCCC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLLN  194 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~g  194 (195)
                      .+.|||.|||.++|+++|..+|++|...++|+++..+.++.|
T Consensus         8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~kg   49 (89)
T d1cvja2           8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG   49 (89)
T ss_dssp             TTEEEEESCCSSCCHHHHHHHHHTTSCEEEEEECCBTTBCCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEeecCCCcc
Confidence            456999999999999999999999999999999987766554

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.1e-05  Score=57.01  Aligned_cols=41  Identities=20%  Similarity=0.459  Sum_probs=36.0

Q ss_pred             CCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ..||  ...|||.|||.++|+++|..+|++|-..++|+++...
T Consensus        14 ~~p~--~~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~   54 (102)
T d2cpza1          14 EGPE--GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK   54 (102)
T ss_dssp             CCST--TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS
T ss_pred             CCCC--CCEEEEeCCCCCCCHHHHHHHHHhhccccccceeeec
Confidence            3466  5679999999999999999999999999999998643

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=5.6e-06  Score=56.91  Aligned_cols=36  Identities=22%  Similarity=0.506  Sum_probs=33.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +++|||.|||.++|+++|..+|++|.-.++|+++..
T Consensus         5 ~~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d   40 (89)
T d2cqba1           5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD   40 (89)
T ss_dssp             CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC
T ss_pred             CcEEEEeCCCCcCCHHHHHHHHhhCCeEEecccccc
Confidence            789999999999999999999999999999999853

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1e-05  Score=56.26  Aligned_cols=38  Identities=24%  Similarity=0.330  Sum_probs=35.1

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCc
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES  190 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~  190 (195)
                      +.+|||.|||.++|+++|..+|.+|-..++|+++..+.
T Consensus         7 s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~~~~   44 (93)
T d1h2vz_           7 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM   44 (93)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHCCcceeccccccc
Confidence            78999999999999999999999999999999987543

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.8e-05  Score=54.81  Aligned_cols=42  Identities=17%  Similarity=0.290  Sum_probs=36.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCccCCC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLLN  194 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~g  194 (195)
                      .+.|||.|||.+||+++|..+|.+|.-.++|+++..+....|
T Consensus        11 ~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~kg   52 (93)
T d2cq3a1          11 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG   52 (93)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcceeeeccccccccCCcc
Confidence            457999999999999999999999999999999976655443

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=6.1e-06  Score=57.77  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=32.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      +.+|||.|||.++|+++|..+|.+|--.++|+|.+
T Consensus        10 ~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l~~   44 (111)
T d1whxa_          10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE   44 (111)
T ss_dssp             EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS
T ss_pred             CCEEEEECCCCCCCHHHHHhhhhccCCccEEEeec
Confidence            67999999999999999999999999889998854

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=5.8e-06  Score=58.11  Aligned_cols=36  Identities=25%  Similarity=0.476  Sum_probs=34.1

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +.+|||.|||.++|+++|..+|.+|--.+.|++++.
T Consensus        18 ~~~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i~~~   53 (96)
T d1x4ga1          18 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE   53 (96)
T ss_dssp             CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHhCCceEEEEEec
Confidence            678999999999999999999999999999999875

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=1.4e-05  Score=54.77  Aligned_cols=37  Identities=24%  Similarity=0.486  Sum_probs=34.0

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|.+|-..++++++...
T Consensus         8 ~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~~~~~   44 (98)
T d1x4ha1           8 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP   44 (98)
T ss_dssp             CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCS
T ss_pred             CCEEEEcCCCCcCCHHHHHHHHhccccceeeeecccc
Confidence            7899999999999999999999999888889987654

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.77  E-value=1.5e-05  Score=54.13  Aligned_cols=36  Identities=22%  Similarity=0.418  Sum_probs=33.1

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +..|||.|||.++|+++|..+|++|-..++|+++..
T Consensus         6 ~t~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~~~d   41 (85)
T d1b7fa2           6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRD   41 (85)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhhCCEeeeeeecc
Confidence            456999999999999999999999999999999864

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=1.1e-05  Score=56.11  Aligned_cols=36  Identities=33%  Similarity=0.567  Sum_probs=33.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ++.|||.|||.++|+++|..+|++|.-.++|+|+..
T Consensus         8 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~   43 (94)
T d2cpha1           8 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKK   43 (94)
T ss_dssp             CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEec
Confidence            678999999999999999999999998999999764

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.6e-05  Score=53.09  Aligned_cols=35  Identities=26%  Similarity=0.383  Sum_probs=32.4

Q ss_pred             ceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ..|||.|||.++|+++|..+|++|.-.++|+++..
T Consensus         3 t~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~   37 (82)
T d1fxla1           3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD   37 (82)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCCcccccceee
Confidence            45999999999999999999999999999999854

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.2e-05  Score=55.12  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=32.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      ++.|||.|||.++|+++|..+|.+|--.++|++..
T Consensus         5 s~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~   39 (88)
T d1wf0a_           5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK   39 (88)
T ss_dssp             CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEee
Confidence            78999999999999999999999999999998753

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=1e-05  Score=54.73  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=31.8

Q ss_pred             EEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      |||.|||.++|+++|..+|++|...++|+++..+
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~   34 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKK   34 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEE
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhCCccccceeccc
Confidence            8999999999999999999999999999998654

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.74  E-value=1.1e-05  Score=55.32  Aligned_cols=37  Identities=16%  Similarity=0.345  Sum_probs=34.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ..+|||.|||.++|+++|..+|++|...++|+++..+
T Consensus         7 ~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~d~   43 (88)
T d1rk8a_           7 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR   43 (88)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcCCcccccccccc
Confidence            6899999999999999999999999999999998643

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.3e-05  Score=53.98  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=32.5

Q ss_pred             eEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .|||.|||.++|+++|..+|++|...++|+++..+
T Consensus         2 slfV~nL~~~~te~~l~~~F~~~G~i~~v~i~~d~   36 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDM   36 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCEeEEEEEecc
Confidence            39999999999999999999999999999999744

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.6e-05  Score=54.30  Aligned_cols=36  Identities=28%  Similarity=0.615  Sum_probs=33.4

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +..|||.|||.++|+++|..+|++|.-.++|+++..
T Consensus         6 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d   41 (85)
T d1fxla2           6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD   41 (85)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCccccccccc
Confidence            456999999999999999999999999999999964

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=2.2e-05  Score=54.52  Aligned_cols=36  Identities=17%  Similarity=0.202  Sum_probs=33.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +.+|||.|||.++|+++|..+|++|.-.++|+++..
T Consensus         9 ~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~~~d   44 (93)
T d1x5ua1           9 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKD   44 (93)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHhCCccccceeec
Confidence            679999999999999999999999999999999854

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.5e-05  Score=54.47  Aligned_cols=36  Identities=25%  Similarity=0.434  Sum_probs=33.0

Q ss_pred             ceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +-|||.|||.++|+++|..+|++|.-.++|+++..+
T Consensus         2 ~rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i~~d~   37 (85)
T d2u2fa_           2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS   37 (85)
T ss_dssp             CCEEEETCCSSCCSHHHHHHHTSSSCEEEEEEECCC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHhcCccceEEeeccc
Confidence            459999999999999999999999999999998643

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=2.6e-05  Score=52.85  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=31.4

Q ss_pred             CCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297          147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV  186 (195)
Q Consensus       147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV  186 (195)
                      .+..  .++|||.|||.++|+++|..+|++|.-.+.+++.
T Consensus         4 ~~~~--~k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~~   41 (86)
T d2cpda1           4 TMSS--VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK   41 (86)
T ss_dssp             CSSC--CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEE
T ss_pred             cccC--CCEEEEcCCCCCCCHHHHHHhhcccceeeeEEEc
Confidence            3445  7899999999999999999999999666666553

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=3e-05  Score=53.24  Aligned_cols=37  Identities=24%  Similarity=0.495  Sum_probs=34.5

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      .+++|||.|||.++|+++|..+|++|.-.++|+++..
T Consensus         7 ~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d   43 (90)
T d2cq0a1           7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKD   43 (90)
T ss_dssp             SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEEC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhccccccccccc
Confidence            3789999999999999999999999999999999864

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1e-05  Score=56.57  Aligned_cols=37  Identities=19%  Similarity=0.336  Sum_probs=33.4

Q ss_pred             CceEEecCCC-CcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLP-ADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP-~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      |++|||.||| ..+|+++|..+|++|.-.++|+++..+
T Consensus         2 ~~~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i~~~~   39 (109)
T d2adca1           2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK   39 (109)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHhhccccceEEEEecc
Confidence            7899999995 569999999999999999999998753

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.2e-05  Score=54.40  Aligned_cols=35  Identities=20%  Similarity=0.521  Sum_probs=31.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      +..|||.|||.++|+++|.++|.+|.-.+.|++..
T Consensus        14 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~   48 (95)
T d1x4aa1          14 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN   48 (95)
T ss_dssp             SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhcCCceEEEEecc
Confidence            67899999999999999999999999888888754

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=4e-05  Score=52.55  Aligned_cols=36  Identities=31%  Similarity=0.445  Sum_probs=33.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      .+.|||.|||.++|+++|..+|++|.-.++|++.+.
T Consensus         8 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~~~~   43 (86)
T d2cpja1           8 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD   43 (86)
T ss_dssp             TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhCCceEeeeecc
Confidence            457999999999999999999999999999999854

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.63  E-value=2e-05  Score=57.62  Aligned_cols=40  Identities=20%  Similarity=0.420  Sum_probs=35.5

Q ss_pred             CCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       150 Pd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ++.+++|||.|||.++|+++|..+|++|--.++|+++..+
T Consensus        39 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~   78 (139)
T d1u6fa1          39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR   78 (139)
T ss_dssp             TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhhcccccccccccc
Confidence            3346789999999999999999999999999999998644

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=2.9e-05  Score=53.13  Aligned_cols=37  Identities=14%  Similarity=0.316  Sum_probs=34.0

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.++|+++|..+|++|--.++|+|+..+
T Consensus         6 ~rtvfV~nlp~~~te~~l~~~F~~~G~v~~v~l~~~~   42 (85)
T d1zh5a2           6 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL   42 (85)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT
T ss_pred             cCEEEEECCCCCCCHHHHHHHHHHhcccccceeeeec
Confidence            6799999999999999999999999889999997654

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=3.3e-05  Score=50.58  Aligned_cols=35  Identities=17%  Similarity=0.548  Sum_probs=32.2

Q ss_pred             EEecCCCCcccHHHHHhhccCCCCceEEEeeecCc
Q 029297          156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES  190 (195)
Q Consensus       156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~  190 (195)
                      |||.|||.++|+++|..+|.+|-..+.++++..+.
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~   35 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT   35 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSS
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhccccccccccccc
Confidence            79999999999999999999999999999887553

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=3e-05  Score=52.06  Aligned_cols=31  Identities=26%  Similarity=0.457  Sum_probs=27.2

Q ss_pred             EEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      |||.|||.++|+++|..+|++| |.+.+++..
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~-g~~~~~~~~   31 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDY-ELKYCFVDK   31 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTS-CEEEEEEET
T ss_pred             CEEeCCCCcCCHHHHHHHHhcc-cccceeecc
Confidence            7999999999999999999999 677777543

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=2.9e-05  Score=53.97  Aligned_cols=36  Identities=22%  Similarity=0.438  Sum_probs=33.1

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ++.|||.|||.+||+++|..+|.+|--.++|+++..
T Consensus         8 ~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i~~d   43 (99)
T d1whwa_           8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPID   43 (99)
T ss_dssp             CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCC
T ss_pred             CCEEEEECCCCcCCHHHHHHHHHhcCCceeeeeccc
Confidence            557999999999999999999999999999999853

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=6.5e-06  Score=57.13  Aligned_cols=37  Identities=22%  Similarity=0.436  Sum_probs=33.5

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ++++|||.|||.++|+++|..+|.+|...+.++++..
T Consensus        17 ps~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~   53 (102)
T d2cpxa1          17 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFR   53 (102)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhccceeeEEeecc
Confidence            4899999999999999999999999988888888753

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=1.9e-05  Score=53.05  Aligned_cols=38  Identities=21%  Similarity=0.204  Sum_probs=34.8

Q ss_pred             eEEecCCCCcccHHHHHhhccCCCCceEEEeeecCccC
Q 029297          155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKL  192 (195)
Q Consensus       155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~  192 (195)
                      ++||.|||.++|+++|..+|++|-.-++|+|+..+.+.
T Consensus         2 tv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~~~~~~   39 (75)
T d2ghpa2           2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKN   39 (75)
T ss_dssp             EEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSS
T ss_pred             EEEEECCCCCCCHHHHHHHHhcCCceEEEEEEeecccc
Confidence            79999999999999999999999999999999876554

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=7.1e-05  Score=52.50  Aligned_cols=34  Identities=18%  Similarity=0.262  Sum_probs=28.8

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV  186 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV  186 (195)
                      +.+|||.|||.+||+++|..+|.++-..+++.++
T Consensus        15 ~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~   48 (104)
T d1wg5a_          15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL   48 (104)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEEC
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEE
Confidence            6789999999999999999999999766654433

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=6.8e-05  Score=52.72  Aligned_cols=35  Identities=14%  Similarity=0.153  Sum_probs=32.2

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      .++|||.|||.+||+++|..+|++|--.+.|++..
T Consensus        15 ~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~~   49 (98)
T d1wg4a_          15 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQK   49 (98)
T ss_dssp             SCEEEEECCCSSCCHHHHHHHHTTSSCEEEEEEET
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHhhcccccccccc
Confidence            57899999999999999999999999999998764

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=3.2e-05  Score=54.46  Aligned_cols=38  Identities=16%  Similarity=0.248  Sum_probs=34.2

Q ss_pred             CCceEEecCCCCc-ccHHHHHhhccCCCCceEEEeeecC
Q 029297          152 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       152 ~N~ILFVQNLP~d-~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .+++|||.|||.+ ||+++|..+|++|.-.++|++++.+
T Consensus        17 ~~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~~~~k   55 (99)
T d1x4fa1          17 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK   55 (99)
T ss_dssp             CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT
T ss_pred             CCCEEEEeCCcCCccCHHHHHhhhccccceeEEEEeecC
Confidence            4889999999985 8999999999999999999998643

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=3.6e-05  Score=53.01  Aligned_cols=32  Identities=31%  Similarity=0.467  Sum_probs=27.1

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEe
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRL  185 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRL  185 (195)
                      ++.|||.|||.++|+++|..||++|. .+.+++
T Consensus         5 s~~i~V~nLp~~~t~~~l~~lF~~~G-~~~~~~   36 (88)
T d1wg1a_           5 SSGILVKNLPQDSNCQEVHDLLKDYD-LKYCYV   36 (88)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHTCSSC-CCCEEE
T ss_pred             CCEEEEeCCCCccChHHHHHHHHhcC-ceeeee
Confidence            67899999999999999999999984 444443

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=5.6e-05  Score=50.12  Aligned_cols=37  Identities=11%  Similarity=0.396  Sum_probs=33.6

Q ss_pred             ceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCc
Q 029297          154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES  190 (195)
Q Consensus       154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~  190 (195)
                      +-|||.|||.++|+++|..+|++|-..+++++...+.
T Consensus         3 r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~   39 (79)
T d1l3ka2           3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG   39 (79)
T ss_dssp             SEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTT
T ss_pred             CEEEECCCCCcCCHHHHHHHHHHhccccccccccCCC
Confidence            6799999999999999999999999999999886543

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=4.2e-05  Score=53.91  Aligned_cols=37  Identities=22%  Similarity=0.433  Sum_probs=33.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .+.|||.|||.++|+++|.++|++|.-.++|+++..+
T Consensus        10 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~   46 (103)
T d2cqda1          10 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR   46 (103)
T ss_dssp             SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCS
T ss_pred             CcEEEEeCCCCcCcHHHHHHHHhhcccccceeccccc
Confidence            4569999999999999999999999999999998754

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=2.1e-05  Score=52.86  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=31.9

Q ss_pred             EEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      |||.|||.++|+++|..+|++|.-.++|+++..+
T Consensus         3 l~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~~   36 (78)
T d1no8a_           3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR   36 (78)
T ss_dssp             EEEESCCTTCCHHHHHHHHHHHSCEEEEEESCSS
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEee
Confidence            8999999999999999999999999999998654

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=3.6e-05  Score=52.59  Aligned_cols=37  Identities=14%  Similarity=0.296  Sum_probs=33.8

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .+.|||.|||.++|+++|..+|++|.-..+|+|+..+
T Consensus         6 ~~~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~d~   42 (84)
T d1l3ka1           6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDP   42 (84)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhhccccceeecccc
Confidence            5689999999999999999999999999999998543

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00013  Score=50.90  Aligned_cols=37  Identities=22%  Similarity=0.530  Sum_probs=33.4

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ...|||.|||.++|+++|..+|++|.-.+.++++...
T Consensus        18 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~   54 (101)
T d1x5oa1          18 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS   54 (101)
T ss_dssp             TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhcccccceeeeccc
Confidence            3579999999999999999999999989999988754

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=3.6e-05  Score=53.36  Aligned_cols=37  Identities=8%  Similarity=0.141  Sum_probs=34.1

Q ss_pred             CceEEecCCCCc-ccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d-~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      +++|||.|||.. +|+++|..||++|-..++|++++.+
T Consensus         8 sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~~~k   45 (89)
T d1x4da1           8 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI   45 (89)
T ss_dssp             CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS
T ss_pred             CcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEeeccc
Confidence            899999999986 7899999999999999999998754

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=3.8e-05  Score=51.89  Aligned_cols=33  Identities=21%  Similarity=0.387  Sum_probs=31.1

Q ss_pred             EEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      |||.|||.++|+++|..+|++|...++|+++..
T Consensus         3 lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d   35 (77)
T d1uawa_           3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD   35 (77)
T ss_dssp             EEEESCCSSCCSHHHHHHHTTTSCCCCEEEECC
T ss_pred             EEEeCCCCcCCHHHHHHHHHHhCCcceeeeecc
Confidence            899999999999999999999999999999753

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=4e-05  Score=54.16  Aligned_cols=39  Identities=21%  Similarity=0.165  Sum_probs=35.0

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCcc
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK  191 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~  191 (195)
                      ...|||.|||.++|+++|..+|.+|.-.++|+++..+.+
T Consensus         7 ~~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~~~~   45 (108)
T d2adba1           7 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQ   45 (108)
T ss_dssp             EEEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEETTE
T ss_pred             eEEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEeeCCC
Confidence            567899999999999999999999999999999876543

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=4.3e-05  Score=51.03  Aligned_cols=34  Identities=24%  Similarity=0.490  Sum_probs=31.6

Q ss_pred             EEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      |||.|||.++|+++|..+|++|.-.++|+++..+
T Consensus         2 lfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d~   35 (75)
T d1hd0a_           2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDP   35 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCEEEEECCCBT
T ss_pred             EEEeCCCCcCCHHHHHHHHHhhccccccccccCC
Confidence            8999999999999999999999999999998643

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=4.2e-05  Score=53.44  Aligned_cols=37  Identities=22%  Similarity=0.398  Sum_probs=33.8

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .++|||.|||.++|+++|..+|++|.-..+|+++..+
T Consensus         8 ~rtl~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~   44 (104)
T d1p1ta_           8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR   44 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEET
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhcccccccccccccc
Confidence            5689999999999999999999999989999998643

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=7.2e-05  Score=52.98  Aligned_cols=36  Identities=19%  Similarity=0.385  Sum_probs=33.8

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      .++|||.|||.++|+++|..+|.+|.-.++||++..
T Consensus        18 ~~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~~d   53 (101)
T d2cq4a1          18 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISD   53 (101)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHcCCCeEEEEEeeec
Confidence            578999999999999999999999999999999964

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=1.9e-05  Score=54.12  Aligned_cols=34  Identities=15%  Similarity=0.178  Sum_probs=31.0

Q ss_pred             ceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      |-|||.|||.+||+++|.++|++|-..++|+++.
T Consensus         1 nrvfV~nlp~~~~~~~l~~~F~~~G~v~~~~i~~   34 (87)
T d3begb1           1 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR   34 (87)
T ss_dssp             CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT
T ss_pred             CeEEEECCCCcCCHHHHHHHHhhhcccccccccc
Confidence            4599999999999999999999999899998764

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00013  Score=50.99  Aligned_cols=35  Identities=23%  Similarity=0.462  Sum_probs=31.2

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      .++|||.|||.+||+++|..+|..| |-.+|+++-.
T Consensus        15 ~~~v~v~nLp~~~te~dl~~~F~~~-~~~~v~~~~~   49 (102)
T d1weza_          15 GHCVHMRGLPYRATENDIYNFFSPL-NPMRVHIEIG   49 (102)
T ss_dssp             SCEEEEESCCTTCCHHHHHHSSCSC-CCSEEEEEES
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHhcc-CcceeeeEEe
Confidence            6899999999999999999999998 6778887754

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=2.5e-05  Score=52.78  Aligned_cols=35  Identities=17%  Similarity=0.261  Sum_probs=30.2

Q ss_pred             ceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      |.|||.|||.++|+++|..+|.+|-.-..++++..
T Consensus         2 n~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~   36 (80)
T d2cqha1           2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK   36 (80)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCcEEEeEEecc
Confidence            46999999999999999999999977777777653

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=8.9e-05  Score=51.47  Aligned_cols=37  Identities=27%  Similarity=0.347  Sum_probs=33.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .+.|||.|||.++|+++|..+|++|.-.++|+|+..+
T Consensus         8 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~   44 (90)
T d2cqga1           8 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL   44 (90)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECS
T ss_pred             CCeEEEECCCCCCCHHHHHHHHHhhcccceeeeccCC
Confidence            5679999999999999999999999989999998643

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=2.6e-05  Score=55.50  Aligned_cols=37  Identities=8%  Similarity=0.116  Sum_probs=34.2

Q ss_pred             CceEEecC--CCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEG--LPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQN--LP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .++|||.|  ||.++|+++|..+|.+|...++|++++.+
T Consensus        18 t~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~~~~k   56 (101)
T d2cq2a1          18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK   56 (101)
T ss_dssp             CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC
T ss_pred             CceEEEECCCCCCCCCHHHHHHHHHhhCcccEEeeccCc
Confidence            78999976  99999999999999999999999998754

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=6.4e-05  Score=51.66  Aligned_cols=30  Identities=30%  Similarity=0.433  Sum_probs=26.7

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceE
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKE  182 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE  182 (195)
                      +++|||.|||.++|+++|..+|++|--.++
T Consensus         8 ~~~i~V~nLp~~~te~~l~~~F~~~G~i~~   37 (101)
T d2cpea1           8 NSAIYVQGLNDSVTLDDLADFFKQCGVVKM   37 (101)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHTTTSCBCB
T ss_pred             CCEEEEECCCCcCCHHHHHHHHHHCceEEE
Confidence            789999999999999999999999865443

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=4.3e-05  Score=52.81  Aligned_cols=34  Identities=18%  Similarity=0.377  Sum_probs=31.1

Q ss_pred             eEEecCCCCcccHHHHHhhccCCC-CceEEEeeec
Q 029297          155 TLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIK  188 (195)
Q Consensus       155 ILFVQNLP~d~T~~eL~~LF~qFp-GFkEVRLVp~  188 (195)
                      -|||.|||.++|+++|..+|++|- +.++|+|+..
T Consensus         3 rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~   37 (96)
T d2disa1           3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYAS   37 (96)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSS
T ss_pred             EEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeee
Confidence            399999999999999999999994 7999999864

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=5.2e-05  Score=50.63  Aligned_cols=35  Identities=14%  Similarity=0.231  Sum_probs=30.7

Q ss_pred             ceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      .+|||.|||.++|+++|..+|++|...+.++++..
T Consensus         2 ~tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~   36 (81)
T d2ghpa1           2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPS   36 (81)
T ss_dssp             CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-
T ss_pred             cEEEEECCCCcCCHHHHHHHHHHhCcEEeeeeecc
Confidence            48999999999999999999999988888877654

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=7.7e-05  Score=48.68  Aligned_cols=35  Identities=26%  Similarity=0.549  Sum_probs=31.8

Q ss_pred             EEecCCCCcccHHHHHhhccCCCCceEEEeeecCc
Q 029297          156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES  190 (195)
Q Consensus       156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~  190 (195)
                      |||.|||.++|+++|..+|++|-..+.++++..+.
T Consensus         2 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~   36 (75)
T d2msta_           2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT   36 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCCSEECCBCCTT
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeecc
Confidence            89999999999999999999999999998876543

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00017  Score=51.20  Aligned_cols=37  Identities=11%  Similarity=0.305  Sum_probs=33.9

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      .+.|||.|||.++|+++|..+|.+|.-.++|+++...
T Consensus        20 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i~~d~   56 (103)
T d1x4ba1          20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDP   56 (103)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCT
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHhhCcccceeecccc
Confidence            4689999999999999999999999999999997643

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00012  Score=49.23  Aligned_cols=35  Identities=17%  Similarity=0.242  Sum_probs=29.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceE-EEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE-VRLVp  187 (195)
                      ..+|||.|||.++|+++|..+|++|.-.++ |++..
T Consensus         9 ~~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~   44 (86)
T d2cqpa1           9 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY   44 (86)
T ss_dssp             SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcccceeEEEEEe
Confidence            578999999999999999999999976655 34444

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=97.23  E-value=6.9e-05  Score=51.88  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=26.0

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceE
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKE  182 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE  182 (195)
                      +++|||.|||.++|+++|..+|.+|.-.+.
T Consensus        16 ~~~l~V~nL~~~~te~~l~~~F~~~g~v~~   45 (96)
T d1fjca_          16 ARTLLAKNLSFNITEDELKEVFEDALEIRL   45 (96)
T ss_dssp             GGEEEEESCCSSCCHHHHHHHHCSEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhccccee
Confidence            789999999999999999999998654333

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.0001  Score=50.48  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=29.0

Q ss_pred             CceEEecCCCCcccHHHHH----hhccCCCCceEEEeee
Q 029297          153 SSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~----~LF~qFpGFkEVRLVp  187 (195)
                      |++|||.|||.++|+++|.    .+|++|--.++|++..
T Consensus         3 ~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~~   41 (91)
T d1nu4a_           3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR   41 (91)
T ss_dssp             CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEEee
Confidence            8999999999999998875    4678887777887643

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=9.9e-05  Score=49.78  Aligned_cols=34  Identities=21%  Similarity=0.494  Sum_probs=31.0

Q ss_pred             EEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      |||.|||.++|+++|..+|++|.-.++|+++..+
T Consensus         2 lfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d~   35 (75)
T d1x0fa1           2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN   35 (75)
T ss_dssp             EEEESCCSSCCHHHHHHHHHHHSCEEEEECCCCT
T ss_pred             EEEcCCCCCCCHHHHHHHHHHhCCcccccccccc
Confidence            8999999999999999999999878899987654

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00013  Score=49.70  Aligned_cols=36  Identities=8%  Similarity=0.219  Sum_probs=31.7

Q ss_pred             CceEEecCCCCccc-HHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADST-KREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T-~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      .++|||.|||.++| +++|..+|++|...++|+++..
T Consensus         4 ~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~   40 (86)
T d2ghpa3           4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAG   40 (86)
T ss_dssp             TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSC
T ss_pred             CCEEEEECCCCCcccHHHHHHHHHhhhhccceeeecc
Confidence            68999999999986 5679999999999999998753

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.0002  Score=48.57  Aligned_cols=36  Identities=25%  Similarity=0.481  Sum_probs=31.5

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      ++.|||.|||.++|+++|..+|++|.--+.|+++..
T Consensus         5 ~~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~   40 (90)
T d1x5sa1           5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKD   40 (90)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhccccccceeeccc
Confidence            456999999999999999999999987888877653

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00016  Score=48.39  Aligned_cols=32  Identities=9%  Similarity=0.280  Sum_probs=27.5

Q ss_pred             EEecCCCCcccHHHHHhhccCCCCceEE-Eeee
Q 029297          156 LYVEGLPADSTKREVAHIFRPFVGYKEV-RLVI  187 (195)
Q Consensus       156 LFVQNLP~d~T~~eL~~LF~qFpGFkEV-RLVp  187 (195)
                      |||.|||.++|+++|..+|++|.-..++ +++.
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~   33 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR   33 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECC
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEe
Confidence            7999999999999999999999766564 5554

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00043  Score=48.43  Aligned_cols=34  Identities=18%  Similarity=0.271  Sum_probs=29.9

Q ss_pred             CCceEEecCCC-CcccHHHHHhhccCCCCceEEEe
Q 029297          152 ASSTLYVEGLP-ADSTKREVAHIFRPFVGYKEVRL  185 (195)
Q Consensus       152 ~N~ILFVQNLP-~d~T~~eL~~LF~qFpGFkEVRL  185 (195)
                      .++.|||.||| ..+++++|..+|++|--.++|++
T Consensus        14 ~~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i   48 (98)
T d1wf2a_          14 MNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV   48 (98)
T ss_dssp             CCCCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEE
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEE
Confidence            36779999997 57888999999999999999887

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00062  Score=48.31  Aligned_cols=39  Identities=21%  Similarity=0.419  Sum_probs=31.1

Q ss_pred             CCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEe
Q 029297          147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRL  185 (195)
Q Consensus       147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRL  185 (195)
                      ..|.....+|||.|||.++|+++|..+|+.|.--+++.+
T Consensus        12 ~~~~~~~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~   50 (112)
T d1wela1          12 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIY   50 (112)
T ss_dssp             SSCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCE
T ss_pred             CCCCCCCeEEEEecCCCcCcHHHHhhHHhhcccccccee
Confidence            445555789999999999999999999998765554333

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=96.82  E-value=7.7e-05  Score=51.67  Aligned_cols=36  Identities=11%  Similarity=0.229  Sum_probs=30.5

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      ...+|||.|||.++|+++|..+|.+|.--+.|+++.
T Consensus        12 ~~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~   47 (91)
T d1fjeb1          12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVD   47 (91)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCE
T ss_pred             CCcEEEEeCccCcchHHHHHHHHhcCCcEEEeeeee
Confidence            367899999999999999999999986666666654

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00061  Score=45.45  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=31.1

Q ss_pred             CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      .+++|||.||+  +|+++|..+|++|---++|++.+.
T Consensus         4 ~~~ti~V~~~~--~te~~L~~~F~~~G~I~~v~~~~~   38 (79)
T d2bz2a1           4 KGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPP   38 (79)
T ss_dssp             CCCEEEEECSS--CCHHHHHHHHSTTCCCSCEEEETT
T ss_pred             CCCEEEEECCC--CCHHHHHHHHhccCccceeeeccC
Confidence            37899999996  899999999999999999998753

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0006  Score=50.09  Aligned_cols=37  Identities=11%  Similarity=0.383  Sum_probs=34.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ++.|||.|||.++|+++|..+|..|....+|+++..+
T Consensus        97 ~~~i~V~~lp~~~te~~L~~~f~~~G~v~~~~i~~~~  133 (183)
T d1u1qa_          97 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR  133 (183)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             cceeEEccCCCcCCHHHHhhhhccCCceeeeeeeccc
Confidence            7899999999999999999999999999999998754

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00028  Score=48.40  Aligned_cols=37  Identities=22%  Similarity=0.290  Sum_probs=32.7

Q ss_pred             CceEEecCCCCcccHHHH---HhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADSTKREV---AHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL---~~LF~qFpGFkEVRLVp~r  189 (195)
                      .++|||.|||.++|+++|   .++|.+|--.+.|+++..+
T Consensus         8 ~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i~~~~   47 (89)
T d2cpia1           8 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST   47 (89)
T ss_dssp             SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCS
T ss_pred             cCEEEEECCCCccCHHHHHHHHHHhcccCCceEEEEeecc
Confidence            578999999999999999   7789999999999988654

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.001  Score=46.06  Aligned_cols=35  Identities=14%  Similarity=0.223  Sum_probs=28.6

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceE-EEeee
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVI  187 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE-VRLVp  187 (195)
                      ..+|||.|||.++|+++|..+|.+|.--++ ++++.
T Consensus         8 ~~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~   43 (103)
T d2cpya1           8 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLV   43 (103)
T ss_dssp             CCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECC
T ss_pred             ceEEEEeCCCCCCCHHHHhhhhcccceEEEEEEEEe
Confidence            568999999999999999999999865555 44433

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0013  Score=46.95  Aligned_cols=36  Identities=11%  Similarity=0.140  Sum_probs=32.3

Q ss_pred             CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +-+.||-|||.+||+++|..+|++|---..|+++..
T Consensus        11 ~~~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i~~~   46 (113)
T d1owxa_          11 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG   46 (113)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT
T ss_pred             CeEEEECCCCCCCCHHHHHHHHHhcCChheEEEecC
Confidence            456799999999999999999999999999998854

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.00021  Score=48.54  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=29.5

Q ss_pred             ceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297          154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK  188 (195)
Q Consensus       154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~  188 (195)
                      +-|||.|||.++|+++|..+|++|-....+.+++.
T Consensus         2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~   36 (90)
T d1u2fa_           2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPG   36 (90)
T ss_dssp             CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSS
T ss_pred             CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEecc
Confidence            46999999999999999999998877666666543

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.05  E-value=0.0022  Score=45.38  Aligned_cols=37  Identities=16%  Similarity=0.138  Sum_probs=31.9

Q ss_pred             CceEEecCCCCcc-c----HHHHHhhccCCCCceEEEeeecC
Q 029297          153 SSTLYVEGLPADS-T----KREVAHIFRPFVGYKEVRLVIKE  189 (195)
Q Consensus       153 N~ILFVQNLP~d~-T----~~eL~~LF~qFpGFkEVRLVp~r  189 (195)
                      ++.|||.||+.++ +    +++|+.||.+|--.+++++.+.+
T Consensus         5 ~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~k~~   46 (104)
T d1weya_           5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF   46 (104)
T ss_dssp             CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT
T ss_pred             CceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEEecCC
Confidence            6789999999986 3    36799999999999999998654

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.60  E-value=0.57  Score=31.92  Aligned_cols=38  Identities=11%  Similarity=0.241  Sum_probs=30.0

Q ss_pred             CceEEecCC--CCccc---------HHHHHhhccCCCCceEEEeeecCc
Q 029297          153 SSTLYVEGL--PADST---------KREVAHIFRPFVGYKEVRLVIKES  190 (195)
Q Consensus       153 N~ILFVQNL--P~d~T---------~~eL~~LF~qFpGFkEVRLVp~r~  190 (195)
                      ++||+|.|+  |.+..         +++|...|++|---.+|++...++
T Consensus         8 ~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~~~~~~   56 (99)
T d2dita1           8 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHP   56 (99)
T ss_dssp             CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCT
T ss_pred             ccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEeccCCCC
Confidence            899999999  76642         357888899998888888766543

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.86  E-value=0.47  Score=31.72  Aligned_cols=33  Identities=15%  Similarity=0.123  Sum_probs=28.0

Q ss_pred             ceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297          154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI  187 (195)
Q Consensus       154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp  187 (195)
                      .-+||-++|+++|++.|+ .|.+|---.++++..
T Consensus         5 ~wV~V~G~p~~~~~~il~-~F~~~G~I~~~~~~~   37 (81)
T d1wwha1           5 TWVTVFGFPQASASYILL-QFAQYGNILKHVMSN   37 (81)
T ss_dssp             GEEEEECCCGGGHHHHHH-HHHTTSCEEEEEECS
T ss_pred             cEEEEECCChHHHHHHHH-HHHhhhhhheEEecC
Confidence            468999999999988776 599999999998754