Citrus Sinensis ID: 029311

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
MYFSQNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQGLMSFEHPTREMKAMPRIDSEGVMCGANFKVDVQSRMRSMPRVGSEANWALSGSHAWA
ccccccccccccccccEEEEEccEEEcHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccEEEEEEEccccEEEEEEcccccEEEEEEEEcccEEEEEccHHHHHHHcccccccccccEEEcccccEEEEccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccc
cccccccccEEEEcccEEEEEHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHccccEEEEEEEccccEEEEEEcccccEEEEEEEcccccEEEccHHHHHHHHccccccccccccEEccccccEEccccccccEEcccccccccEEcEEEEEEccccccccccccccccHHHccccccc
myfsqnwrrWFCGLHNVYCMFMgslnnlsslnkqyglskgsnEAMFVIEAYRTlrdrgpypahqvlrdldgsfgfvlyDCKAGTIFAALDADEGVRLFWGIaadgsvviSDNLELIKASCaksfapfpagcmfhseqglmsfehptremkampridsegvmcganfkVDVQsrmrsmprvgseanwalsgshawa
MYFSQNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQGLMSFEHPTREMKAMpridsegvmcGANFKVDVQSRMrsmprvgseanwalsgshawa
MYFSQNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQGLMSFEHPTREMKAMPRIDSEGVMCGANFKVDVQSRMRSMPRVGSEANWALSGSHAWA
**FSQNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQG*********************VMCGANFKV***************************
*******RRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAK*FAPFPAGCMFHSEQGLMSFEHPTREMKAMPRIDSEGVMCGANFKVDVQSRMRSMPRVGSEANWALSGSHA**
MYFSQNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQGLMSFEHPTREMKAMPRIDSEGVMCGANFKVDVQSRM*********************
*YFSQNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQGLMSFEHPTREMKAMPRIDSEGVMCGANFKVDVQS***********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MYFSQNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQGLMSFEHPTREMKAMPRIDSEGVMCGANFKVDVQSRMRSMPRVGSEANWALSGSHAWA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query195 2.2.26 [Sep-21-2011]
P24805149 Stem-specific protein TSJ N/A no 0.410 0.536 0.487 1e-19
Q54MB4 557 Probable asparagine synth yes no 0.343 0.120 0.441 1e-06
Q10MX3 604 Asparagine synthetase [gl no no 0.548 0.177 0.311 1e-05
O24661 586 Asparagine synthetase [gl N/A no 0.538 0.179 0.327 2e-05
P49092 586 Asparagine synthetase [gl N/A no 0.538 0.179 0.308 0.0001
Q9LV77 578 Asparagine synthetase [gl no no 0.538 0.181 0.299 0.0002
Q9LFU1 578 Asparagine synthetase [gl no no 0.538 0.181 0.299 0.0002
Q43011 591 Asparagine synthetase [gl no no 0.538 0.177 0.289 0.0003
O24338 525 Asparagine synthetase [gl N/A no 0.353 0.131 0.385 0.0003
P49094 586 Asparagine synthetase [gl N/A no 0.353 0.117 0.371 0.0004
>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1 Back     alignment and function desciption
 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 57/80 (71%)

Query: 9   RWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRD 68
           R    + +V+C+F G+L+N   L K YGLS+ + EAM ++EAY+ LRDR PYP  QV+++
Sbjct: 69  RSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKE 128

Query: 69  LDGSFGFVLYDCKAGTIFAA 88
           L+G F F+L+D KA T+F A
Sbjct: 129 LEGKFAFILFDSKASTLFLA 148

Nicotiana tabacum (taxid: 4097)
>sp|Q54MB4|ASNS_DICDI Probable asparagine synthetase [glutamine-hydrolyzing] OS=Dictyostelium discoideum GN=asns PE=1 SV=1 Back     alignment and function description
>sp|Q10MX3|ASNS1_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Oryza sativa subsp. japonica GN=Os03g0291500 PE=2 SV=1 Back     alignment and function description
>sp|O24661|ASNS_TRIVS Asparagine synthetase [glutamine-hydrolyzing] OS=Triphysaria versicolor GN=AS PE=2 SV=3 Back     alignment and function description
>sp|P49092|ASNS1_LOTJA Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Lotus japonicus GN=AS1 PE=2 SV=2 Back     alignment and function description
>sp|Q9LV77|ASNS2_ARATH Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Arabidopsis thaliana GN=ASN2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFU1|ASNS3_ARATH Asparagine synthetase [glutamine-hydrolyzing] 3 OS=Arabidopsis thaliana GN=ASN3 PE=2 SV=1 Back     alignment and function description
>sp|Q43011|ASNS2_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Oryza sativa subsp. japonica GN=Os06g0265000 PE=2 SV=3 Back     alignment and function description
>sp|O24338|ASNS_SANAU Asparagine synthetase [glutamine-hydrolyzing] OS=Sandersonia aurantiaca GN=AND1 PE=2 SV=3 Back     alignment and function description
>sp|P49094|ASNS_MAIZE Asparagine synthetase [glutamine-hydrolyzing] OS=Zea mays GN=ASN1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
255556005255 Stem-specific protein TSJT1, putative [R 0.953 0.729 0.811 7e-88
224125458255 predicted protein [Populus trichocarpa] 0.953 0.729 0.811 1e-86
224077142255 predicted protein [Populus trichocarpa] 0.953 0.729 0.795 2e-86
118489868255 unknown [Populus trichocarpa x Populus d 0.953 0.729 0.806 5e-86
449433863256 PREDICTED: stem-specific protein TSJT1-l 0.974 0.742 0.778 1e-84
151347488252 unknown [Carica papaya] 0.928 0.718 0.790 8e-83
359497046266 PREDICTED: stem-specific protein TSJT1-l 0.943 0.691 0.777 8e-82
359497096256 PREDICTED: stem-specific protein TSJT1-l 0.938 0.714 0.781 2e-81
388503410257 unknown [Lotus japonicus] 0.953 0.723 0.747 2e-81
449446945254 PREDICTED: stem-specific protein TSJT1-l 0.948 0.728 0.751 4e-80
>gi|255556005|ref|XP_002519037.1| Stem-specific protein TSJT1, putative [Ricinus communis] gi|223541700|gb|EEF43248.1| Stem-specific protein TSJT1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 151/186 (81%), Positives = 172/186 (92%)

Query: 8   RRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLR 67
           +R FCGL++VYC+F+GSLNNL SLN+QYGLSKG+NEAMFVIEAY+TLRDRGPYPAHQVL+
Sbjct: 70  QRLFCGLNDVYCIFLGSLNNLCSLNRQYGLSKGTNEAMFVIEAYKTLRDRGPYPAHQVLK 129

Query: 68  DLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPF 127
           +L+G+FGFV+YD K+G +FAAL A+EGV L+WGIAADGSVVISDNLE+IK SCAKSFAPF
Sbjct: 130 ELEGTFGFVVYDTKSGHVFAALGANEGVGLYWGIAADGSVVISDNLEVIKGSCAKSFAPF 189

Query: 128 PAGCMFHSEQGLMSFEHPTREMKAMPRIDSEGVMCGANFKVDVQSRMRSMPRVGSEANWA 187
           P+GCMFHSEQGLMSFEHP  +MKAMPRIDSEG MCGANFKVD QSR+ SMPRVGSEANWA
Sbjct: 190 PSGCMFHSEQGLMSFEHPRSKMKAMPRIDSEGAMCGANFKVDNQSRISSMPRVGSEANWA 249

Query: 188 LSGSHA 193
           L GS A
Sbjct: 250 LRGSQA 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125458|ref|XP_002329810.1| predicted protein [Populus trichocarpa] gi|222870872|gb|EEF08003.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224077142|ref|XP_002305151.1| predicted protein [Populus trichocarpa] gi|222848115|gb|EEE85662.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118489868|gb|ABK96732.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|449433863|ref|XP_004134716.1| PREDICTED: stem-specific protein TSJT1-like [Cucumis sativus] gi|449479338|ref|XP_004155573.1| PREDICTED: stem-specific protein TSJT1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|151347488|gb|ABS01353.1| unknown [Carica papaya] Back     alignment and taxonomy information
>gi|359497046|ref|XP_003635407.1| PREDICTED: stem-specific protein TSJT1-like [Vitis vinifera] gi|296088194|emb|CBI35710.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359497096|ref|XP_003635423.1| PREDICTED: stem-specific protein TSJT1-like [Vitis vinifera] gi|296090652|emb|CBI41052.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388503410|gb|AFK39771.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449446945|ref|XP_004141230.1| PREDICTED: stem-specific protein TSJT1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
TAIR|locus:2123994250 AT4G27450 "AT4G27450" [Arabido 0.928 0.724 0.740 8.4e-74
TAIR|locus:2090116253 AT3G15450 "AT3G15450" [Arabido 0.943 0.727 0.697 2.4e-69
TAIR|locus:2170822251 AT5G43830 "AT5G43830" [Arabido 0.917 0.713 0.541 9.2e-52
TAIR|locus:2084598248 AT3G22850 "AT3G22850" [Arabido 0.917 0.721 0.525 1.2e-51
TAIR|locus:2182137234 AILP1 "AT5G19140" [Arabidopsis 0.815 0.679 0.481 1.1e-37
DICTYBASE|DDB_G0286059 557 asns "asparagine synthetase" [ 0.548 0.192 0.368 9.1e-06
TAIR|locus:2145377 578 ASN3 "asparagine synthetase 3" 0.558 0.188 0.303 0.00037
TAIR|locus:2177694 578 ASN2 "asparagine synthetase 2" 0.558 0.188 0.303 0.00049
TAIR|locus:2123994 AT4G27450 "AT4G27450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 134/181 (74%), Positives = 159/181 (87%)

Query:     8 RRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLR 67
             +R FCG  ++YC+F GSLNNL  LNKQYGL+K +NEAMFVIEAYRTLRDRGPYPA QV++
Sbjct:    70 QRLFCGFDDIYCLFFGSLNNLCQLNKQYGLTKTTNEAMFVIEAYRTLRDRGPYPADQVVK 129

Query:    68 DLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPF 127
             DLDGSF FV+YD KAG++F AL +D GV+L+WGIAADGSVVISD+L++IK  CAKSFAPF
Sbjct:   130 DLDGSFSFVVYDSKAGSVFTALGSDGGVKLYWGIAADGSVVISDDLDVIKEGCAKSFAPF 189

Query:   128 PAGCMFHSEQGLMSFEHPTREMKAMPRIDSEGVMCGANFKVDVQSRMRSMPRVGSEANWA 187
             P GCMFHSE GLMSFEHP  ++KAMPR+DSEGV+CGANFKVDV +R+ S+PR GSEANW+
Sbjct:   190 PTGCMFHSEGGLMSFEHPMNKIKAMPRVDSEGVLCGANFKVDVYNRVNSIPRRGSEANWS 249

Query:   188 L 188
             L
Sbjct:   250 L 250
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0001666 "response to hypoxia" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
TAIR|locus:2090116 AT3G15450 "AT3G15450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170822 AT5G43830 "AT5G43830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084598 AT3G22850 "AT3G22850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182137 AILP1 "AT5G19140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286059 asns "asparagine synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2145377 ASN3 "asparagine synthetase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2177694 ASN2 "asparagine synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_1240007
hypothetical protein (256 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
pfam12481228 pfam12481, DUF3700, Aluminium induced protein 1e-120
cd01910224 cd01910, Wali7, This domain is present in Wali7, a 1e-111
cd00352220 cd00352, Gn_AT_II, Glutamine amidotransferases cla 3e-20
PLN02549 578 PLN02549, PLN02549, asparagine synthase (glutamine 2e-09
PTZ00077 586 PTZ00077, PTZ00077, asparagine synthetase-like pro 3e-09
PRK09431 554 PRK09431, asnB, asparagine synthetase B; Provision 8e-09
pfam00310223 pfam00310, GATase_2, Glutamine amidotransferases c 5e-05
COG0367 542 COG0367, AsnB, Asparagine synthase (glutamine-hydr 0.002
>gnl|CDD|221596 pfam12481, DUF3700, Aluminium induced protein Back     alignment and domain information 
 Score =  340 bits (875), Expect = e-120
 Identities = 111/160 (69%), Positives = 130/160 (81%)

Query: 9   RWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRD 68
           R F  + +++C+F G L NL+SL +QYGLSK +NEAM VIEAYRTLRDRGPYPA QV++D
Sbjct: 69  RLFAVVDDIFCLFQGHLENLASLRQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKD 128

Query: 69  LDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFP 128
           L+GSF FVLYD K GT+F ALDAD  V LFWGIAADGS+V SD+LEL+KA C KSFAPFP
Sbjct: 129 LEGSFAFVLYDSKTGTVFVALDADGSVPLFWGIAADGSLVFSDDLELLKAGCGKSFAPFP 188

Query: 129 AGCMFHSEQGLMSFEHPTREMKAMPRIDSEGVMCGANFKV 168
            GC F SE GL SFEHP  ++KA+PR+DSEG MCGA FKV
Sbjct: 189 QGCFFSSEGGLRSFEHPMNKLKAVPRVDSEGQMCGATFKV 228

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR. This family is related to GATase enzyme domains. Length = 228
>gnl|CDD|238891 cd01910, Wali7, This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum Back     alignment and domain information
>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase) Back     alignment and domain information
>gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional Back     alignment and domain information
>gnl|CDD|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II Back     alignment and domain information
>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 195
cd01910224 Wali7 This domain is present in Wali7, a protein o 100.0
PF12481228 DUF3700: Aluminium induced protein ; InterPro: IPR 100.0
PLN02549 578 asparagine synthase (glutamine-hydrolyzing) 100.0
PRK09431 554 asnB asparagine synthetase B; Provisional 100.0
KOG0571 543 consensus Asparagine synthase (glutamine-hydrolyzi 100.0
PTZ00077 586 asparagine synthetase-like protein; Provisional 100.0
COG0367 542 AsnB Asparagine synthase (glutamine-hydrolyzing) [ 100.0
TIGR03104 589 trio_amidotrans asparagine synthase family amidotr 100.0
TIGR01536 467 asn_synth_AEB asparagine synthase (glutamine-hydro 100.0
cd01909199 betaLS_CarA_N Glutamine amidotransferases class-II 100.0
TIGR03108 628 eps_aminotran_1 exosortase 1 system-associated ami 99.98
cd00712220 AsnB Glutamine amidotransferases class-II (GATase) 99.97
PF13537125 GATase_7: Glutamine amidotransferase domain; PDB: 99.96
PRK07631 475 amidophosphoribosyltransferase; Provisional 99.95
PRK08525 445 amidophosphoribosyltransferase; Provisional 99.95
PRK06388 474 amidophosphoribosyltransferase; Provisional 99.95
PRK07272 484 amidophosphoribosyltransferase; Provisional 99.95
PRK07349 500 amidophosphoribosyltransferase; Provisional 99.95
cd03766181 Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn 99.94
PRK07847 510 amidophosphoribosyltransferase; Provisional 99.94
PRK06781 471 amidophosphoribosyltransferase; Provisional 99.94
PRK08341 442 amidophosphoribosyltransferase; Provisional 99.94
PRK09123 479 amidophosphoribosyltransferase; Provisional 99.94
cd00714215 GFAT Glutamine amidotransferases class-II (Gn-AT)_ 99.94
PRK05793 469 amidophosphoribosyltransferase; Provisional 99.93
cd00715252 GPATase_N Glutamine amidotransferases class-II (GN 99.93
PLN02440 479 amidophosphoribosyltransferase 99.93
cd01907249 GlxB Glutamine amidotransferases class-II (Gn-AT)_ 99.92
TIGR01134 442 purF amidophosphoribosyltransferase. Alternate nam 99.92
PRK00331 604 glucosamine--fructose-6-phosphate aminotransferase 99.92
PRK09246 501 amidophosphoribosyltransferase; Provisional 99.92
cd00352220 Gn_AT_II Glutamine amidotransferases class-II (GAT 99.92
TIGR01135 607 glmS glucosamine--fructose-6-phosphate aminotransf 99.91
PTZ00295 640 glucosamine-fructose-6-phosphate aminotransferase; 99.91
PF13522133 GATase_6: Glutamine amidotransferase domain 99.9
COG0034 470 PurF Glutamine phosphoribosylpyrophosphate amidotr 99.88
PTZ00394 670 glucosamine-fructose-6-phosphate aminotransferase; 99.87
PLN02981 680 glucosamine:fructose-6-phosphate aminotransferase 99.85
KOG0572 474 consensus Glutamine phosphoribosylpyrophosphate am 99.83
COG0449 597 GlmS Glucosamine 6-phosphate synthetase, contains 99.8
cd00713413 GltS Glutamine amidotransferases class-II (Gn-AT), 99.7
cd01908257 YafJ Glutamine amidotransferases class-II (Gn-AT)_ 99.63
TIGR03442251 conserved hypothetical protein TIGR03442. Members 99.59
PF00310361 GATase_2: Glutamine amidotransferases class-II; In 99.49
KOG0573 520 consensus Asparagine synthase [Amino acid transpor 99.38
PRK11750 1485 gltB glutamate synthase subunit alpha; Provisional 99.2
KOG1268 670 consensus Glucosamine 6-phosphate synthetases, con 99.14
PF13230271 GATase_4: Glutamine amidotransferases class-II; PD 98.4
PF09147201 DUF1933: Domain of unknown function (DUF1933); Int 98.39
COG0067371 GltB Glutamate synthase domain 1 [Amino acid trans 98.3
COG0121252 Predicted glutamine amidotransferase [General func 93.83
KOG0399 2142 consensus Glutamate synthase [Amino acid transport 92.06
PF0456663 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; Int 80.35
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum Back     alignment and domain information 
Probab=100.00  E-value=2.6e-48  Score=322.66  Aligned_cols=165  Identities=67%  Similarity=1.150  Sum_probs=154.2

Q ss_pred             CCCCCCeeecCCcEEEEEEEEEcchHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEECCCC
Q 029311            4 SQNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAG   83 (195)
Q Consensus         4 ~~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~~~~   83 (195)
                      +|..|.+++.+++++|++||+|||+.+||++|..+++.+|+|+|+++|++++++|++++.+++++|+|+|||||||++++
T Consensus        60 ~~~~~rl~~~~~~~~~vfnGeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~  139 (224)
T cd01910          60 SPLHPRLFAVKDDIFCLFQGHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTS  139 (224)
T ss_pred             CcccCcEECCCCCEEEEEEeEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCC
Confidence            57778889999999999999999999999999777888999999999998777797777799999999999999999999


Q ss_pred             EEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEeCCceEEEecCCCccccccCCCCccceec
Q 029311           84 TIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQGLMSFEHPTREMKAMPRIDSEGVMCG  163 (195)
Q Consensus        84 ~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~~~g~~~y~~p~~~~~~~~~~d~~~~~~~  163 (195)
                      ++++||||+|++||||+.+.+|.++||||+++|...|++.+++|||||||.+.+|+++|++|.|+++++||+|++++|||
T Consensus       140 ~l~lARD~~Gi~PLYyg~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s~ggl~~~~~p~~~~~~vp~~~s~g~~cg  219 (224)
T cd01910         140 TVFVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHSEGGLRSFEHPMNKLKAVPRVDSEGEMCG  219 (224)
T ss_pred             EEEEEEcCCCCcceEEEEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeCCCCEEEeeCCCchhhcCCcccCcccEec
Confidence            99999999999999999886789999999999999998789999999999886569999999999999999999999999


Q ss_pred             ccEEE
Q 029311          164 ANFKV  168 (195)
Q Consensus       164 ~~~~v  168 (195)
                      ++|+|
T Consensus       220 ~~f~v  224 (224)
T cd01910         220 ATFKV  224 (224)
T ss_pred             ceeeC
Confidence            99997

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length Back     alignment and domain information
>PLN02549 asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>PRK09431 asnB asparagine synthetase B; Provisional Back     alignment and domain information
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00077 asparagine synthetase-like protein; Provisional Back     alignment and domain information
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase Back     alignment and domain information
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type Back     alignment and domain information
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1 Back     alignment and domain information
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type Back     alignment and domain information
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A Back     alignment and domain information
>PRK07631 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK08525 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK06388 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK07272 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK07349 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>cd03766 Gn_AT_II_novel Gn_AT_II_novel Back     alignment and domain information
>PRK07847 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK06781 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK08341 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK09123 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type Back     alignment and domain information
>PRK05793 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type Back     alignment and domain information
>PLN02440 amidophosphoribosyltransferase Back     alignment and domain information
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type Back     alignment and domain information
>TIGR01134 purF amidophosphoribosyltransferase Back     alignment and domain information
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed Back     alignment and domain information
>PRK09246 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase) Back     alignment and domain information
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing) Back     alignment and domain information
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional Back     alignment and domain information
>PF13522 GATase_6: Glutamine amidotransferase domain Back     alignment and domain information
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] Back     alignment and domain information
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional Back     alignment and domain information
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase Back     alignment and domain information
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type Back     alignment and domain information
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type Back     alignment and domain information
>TIGR03442 conserved hypothetical protein TIGR03442 Back     alignment and domain information
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group Back     alignment and domain information
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11750 gltB glutamate synthase subunit alpha; Provisional Back     alignment and domain information
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D Back     alignment and domain information
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices Back     alignment and domain information
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism] Back     alignment and domain information
>COG0121 Predicted glutamine amidotransferase [General function prediction only] Back     alignment and domain information
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
1ct9_A 553 Crystal Structure Of Asparagine Synthetase B From E 8e-04
>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From Escherichia Coli Length = 553 Back     alignment and structure 
Iteration: 1

 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 23  GSLNNLSSLNKQYG----LSKGSN-EAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVL 77
           G + N  +L  +YG       GS+ E +  +      +++GP    + L DL G F F L
Sbjct: 75  GEIYNHQALRAEYGDRYQFQTGSDCEVILAL-----YQEKGP----EFLDDLQGMFAFAL 125
Query: 78  YDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQ 137
           YD +        D    + L+ G    G + ++  ++ +   C ++   FPAG    S+ 
Sbjct: 126 YDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSYLWSQD 184
Query: 138 G-LMSFEH 144
           G + S+ H
Sbjct: 185 GEIRSYYH 192

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
1ct9_A 553 Asparagine synthetase B; amidotransferase, substra 7e-08
1jgt_A 513 Beta-lactam synthetase; asparagine synthetase, cla 2e-04
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Length = 553 Back     alignment and structure
 Score = 50.6 bits (121), Expect = 7e-08
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 66  LRDLDGSFGFVLYDCKAGTIFAALDADEGVR-LFWGIAADGSVVISDNLELIKASCA--K 122
           L DL G F F LYD +        D   G+  L+ G    G + ++     +KA     +
Sbjct: 114 LDDLQGMFAFALYDSEKDAYLIGRDH-LGIIPLYMGYDEHGQLYVA---SEMKALVPVCR 169

Query: 123 SFAPFPAGCMFHSEQGLMS--FEHPTREMKAMPRIDSEGVMCGANFKVDVQSRMRSMPRV 180
           +   FPAG    S+ G +   +     +  A+    ++        +  V+S + S    
Sbjct: 170 TIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPY 229

Query: 181 GSEANWALSG 190
           G      LSG
Sbjct: 230 GV----LLSG 235
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Length = 513 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
1ct9_A 553 Asparagine synthetase B; amidotransferase, substra 100.0
1jgt_A 513 Beta-lactam synthetase; asparagine synthetase, cla 100.0
1q15_A 503 CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, 99.96
1ao0_A 459 Glutamine phosphoribosylpyrophosphate amidotransfe 99.95
1xff_A240 D-fructose-6-, glucosamine--fructose-6-phosphate a 99.95
1ecf_A 504 Glutamine phosphoribosylpyrophosphate amidotransf; 99.92
2bpl_A 608 Glucosamine--fructose-6-phosphate aminotransferase 99.91
3mdn_A274 Glutamine aminotransferase class-II domain protei; 99.88
1te5_A257 Conserved hypothetical protein; glutamine amidotra 99.68
1ea0_A 1479 Glutamate synthase [NADPH] large chain; oxidoreduc 99.62
1ofd_A 1520 Ferredoxin-dependent glutamate synthase 2; oxidore 99.58
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Back     alignment and structure
Probab=100.00  E-value=6.8e-36  Score=276.60  Aligned_cols=164  Identities=21%  Similarity=0.401  Sum_probs=142.0

Q ss_pred             CCCCCeeecCCcEEEEEEEEEcchHHHHHHhc---CCCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEECC
Q 029311            5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYG---LSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCK   81 (195)
Q Consensus         5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~---~~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~~   81 (195)
                      .+.||+.+.+++++++|||+|||+.+||++|.   .|++.||+|+|+++|+   ++|.    +++++|+|+|||++||.+
T Consensus        57 ~~~QP~~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f~s~sDtEvil~l~~---~~g~----~~l~~l~G~fa~~i~d~~  129 (553)
T 1ct9_A           57 AGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQ---EKGP----EFLDDLQGMFAFALYDSE  129 (553)
T ss_dssp             TCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTTHHHHHHHH---HHTT----TTGGGCCEEEEEEEEETT
T ss_pred             CCCCCeEeCCCCEEEEEEEEEECHHHHHHHHhccCccCCCCcHHHHHHHHH---HHHH----HHHHhCCccEEEEEEECC
Confidence            57899999888999999999999999999986   3889999999999998   5676    899999999999999998


Q ss_pred             CCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEeCCc-eEEEecCCCccc-cccCCC---
Q 029311           82 AGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQG-LMSFEHPTREMK-AMPRID---  156 (195)
Q Consensus        82 ~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~~~g-~~~y~~p~~~~~-~~~~~d---  156 (195)
                      +++++++||++|++||||+...++.++||||.++|...+ +.|.+|||||++..++| +++||+|.|... ..+..+   
T Consensus       130 ~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~~~~-~~i~~l~pG~~~~~~~g~~~~yw~~~~~~~~~~~~~~~~~  208 (553)
T 1ct9_A          130 KDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDK  208 (553)
T ss_dssp             TTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTC-SEEEECCTTEEEETTTCSEEECCCCGGGSHHHHTTCCCCH
T ss_pred             CCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHHhhc-CCEEEECCCeEEEEcCCcEEEeecCCccccccCCCHHHHH
Confidence            899999999999999999995457899999999998776 67999999999887666 889999876531 111111   


Q ss_pred             -----------CccceecccEEEEeccCCCC
Q 029311          157 -----------SEGVMCGANFKVDVQSRMRS  176 (195)
Q Consensus       157 -----------~~~~~~~~~~~v~~~~~l~~  176 (195)
                                 ..+++++++++|.|||||||
T Consensus       209 ~~lr~~L~~aV~~rl~sdvpvgv~LSGGlDS  239 (553)
T 1ct9_A          209 NELRQALEDSVKSHLMSDVPYGVLLSGGLDS  239 (553)
T ss_dssp             HHHHHHHHHHHHHHTCCSSCEEEECCSSHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEeCCCCccH
Confidence                       14678999999999999993
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Back     alignment and structure
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Back     alignment and structure
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1* Back     alignment and structure
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A* Back     alignment and structure
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A* Back     alignment and structure
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A* Back     alignment and structure
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi} Back     alignment and structure
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1 Back     alignment and structure
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Back     alignment and structure
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
d1ct9a2192 Asparagine synthetase B, N-terminal domain {Escher 100.0
d1jgta2206 beta-Lactam synthetase {Streptomyces clavuligerus 99.97
d1q15a2204 beta-Lactam synthetase {Pectobacterium carotovorum 99.95
d1gph12234 Glutamine PRPP amidotransferase, N-terminal domain 99.93
d1ecfa2249 Glutamine PRPP amidotransferase, N-terminal domain 99.9
d1xffa_238 Glucosamine 6-phosphate synthase, N-terminal domai 99.86
d1te5a_253 Hypothetical protein YafJ (PA1307) {Pseudomonas ae 98.99
d1ofda3430 Alpha subunit of glutamate synthase, N-terminal do 98.87
d1ea0a3422 Alpha subunit of glutamate synthase, N-terminal do 98.82
d1ct9a1 324 Asparagine synthetase B, C-terminal domain {Escher 84.87
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-35  Score=238.04  Aligned_cols=132  Identities=23%  Similarity=0.493  Sum_probs=120.3

Q ss_pred             CCCCCeeecCCcEEEEEEEEEcchHHHHHHhcC---CCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEECC
Q 029311            5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL---SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCK   81 (195)
Q Consensus         5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~---~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~~   81 (195)
                      .+.||++..+++++++|||+|||+.+|+++|..   +.+.+|+|+++++|+   ++|.    +++++|+|+|||++||..
T Consensus        57 ~~~~~~~~~~~~~~lv~NGeI~N~~~l~~~l~~~~~~~s~sDtevll~~~~---~~g~----~~~~~l~G~fa~~i~d~~  129 (192)
T d1ct9a2          57 AGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQ---EKGP----EFLDDLQGMFAFALYDSE  129 (192)
T ss_dssp             TCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTTHHHHHHHH---HHTT----TTGGGCCEEEEEEEEETT
T ss_pred             CCcccccccCCceEEEecCccchhHHHHHHHhcCcccCCCCcHHHHHHHhh---hcch----hhhhhhhhheEEEEEecC
Confidence            467888888899999999999999999999863   678899999999998   5786    899999999999999999


Q ss_pred             CCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEeCCc-eEEEec
Q 029311           82 AGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQG-LMSFEH  144 (195)
Q Consensus        82 ~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~~~g-~~~y~~  144 (195)
                      +++|+++|||+|+|||||+.+++|.++||||+++|...| +.|++|||||++..++| +++||+
T Consensus       130 ~~~l~~aRD~~G~kPLyy~~~~~g~~~fsSE~k~L~~~~-~~i~~~~pG~~l~~~~~~i~~y~~  192 (192)
T d1ct9a2         130 KDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSYLWSQDGEIRSYYH  192 (192)
T ss_dssp             TTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTC-SEEEECCTTEEEETTTCSEEECCC
T ss_pred             cceeEEEEccccceeEEEEEecCcEEEEEeCHHHHHHhh-CCeEEcCCccEEEEcCCcEEeecC
Confidence            999999999999999999998667899999999999988 57999999999888765 999985
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]} Back     information, alignment and structure
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]} Back     information, alignment and structure
>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure