Citrus Sinensis ID: 029312

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHcccEcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEccHHHcc
Coil and Loop (DISEMBL)
MLKNIFLDVKKKFETALGVLrkekitiapedpaavSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKklgirkedlPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL
Flexible Loop (DISEMBL)
mlknifldvkKKFETAlgvlrkekitiapedpaavsQYANVMKTVREKADLFSESQRIAYtietrtagipdarTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDkinkklgirkedlPKYEEQLELKIAKAQLEELKKDALEAMETQkkreefkdeemvevksldvrnfl
Low Complexity Region (SEG)
MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL
Disordered region (IsUnstruct)
*************************************************DLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDE******************************ALLTAEFDKINKKLGI**********************************************************
Disordered Region (DISOPRED)
**KNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTL***************EAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEEL*********************MVEVKSLDVRNFL
Disordered Region (DISEMBL)
MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL
Disordered Region (DISPRO)
MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDV***L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEEFKDEEMVEVKSLDVRNFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q9SJ12	240	Probable ATP synthase 24	yes	no	1.0	0.812	0.738	7e-79

>sp|Q9SJ12|ATP7_ARATH Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1

 Score =  293 bits (749), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 144/195 (73%), Positives = 170/195 (87%)

Query: 1   MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAY 60
           MLK +F D+K KF+ A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI +
Sbjct: 46  MLKGVFFDIKNKFQAAVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKH 105

Query: 61  TIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKG 120
            I+T T  IPDAR YLL L+EIR RRGL DE GAEAMM +ALEKVEK+IKKPL+R+DKKG
Sbjct: 106 DIDTETQDIPDARAYLLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKG 165

Query: 121 MALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD 180
           M LL AEF+K NKKLGIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+D
Sbjct: 166 MDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQD 225

Query: 181 EEMVEVKSLDVRNFL 195
           EEM +VKSLD+RNF+
Sbjct: 226 EEMPDVKSLDIRNFI 240

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
225438529	240	PREDICTED: probable ATP synthase 24 kDa	1.0	0.812	0.897	6e-94
255582813	243	conserved hypothetical protein [Ricinus	1.0	0.802	0.887	4e-93
147819925	240	hypothetical protein VITISV_031883 [Viti	1.0	0.812	0.887	8e-93
449515821	240	PREDICTED: probable ATP synthase 24 kDa	1.0	0.812	0.825	6e-86
449448424	240	PREDICTED: probable ATP synthase 24 kDa	1.0	0.812	0.825	6e-86
388499758	241	unknown [Lotus japonicus]	1.0	0.809	0.811	2e-83
224093896	240	predicted protein [Populus trichocarpa]	1.0	0.812	0.789	4e-82
118484162	240	unknown [Populus trichocarpa]	1.0	0.812	0.789	9e-82
356512762	241	PREDICTED: probable ATP synthase 24 kDa	1.0	0.809	0.801	3e-81
255645559	241	unknown [Glycine max]	1.0	0.809	0.795	9e-81

>gi|225438529|ref|XP_002279389.1| PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera] gi|296082520|emb|CBI21525.3| unnamed protein product [Vitis vinifera]

 Score =  348 bits (893), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 175/195 (89%), Positives = 186/195 (95%)

Query: 1   MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAY 60
           MLKNIFL+VKKKFETA+GVLRKEKITI PEDPAAV+QYA VMKTVREKADLFSESQRI Y
Sbjct: 46  MLKNIFLEVKKKFETAMGVLRKEKITIDPEDPAAVNQYAKVMKTVREKADLFSESQRIQY 105

Query: 61  TIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKG 120
           TI+TRT GIPDARTYLLTLKEIR +RGL DE GAEAMMMDALEKVEKE+KKPLMRNDKKG
Sbjct: 106 TIQTRTQGIPDARTYLLTLKEIRIKRGLTDELGAEAMMMDALEKVEKELKKPLMRNDKKG 165

Query: 121 MALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD 180
           MALL AEFDK+NKKLG+RKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD
Sbjct: 166 MALLMAEFDKVNKKLGVRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD 225

Query: 181 EEMVEVKSLDVRNFL 195
           E MV+VKSLD+RNF+
Sbjct: 226 EAMVDVKSLDIRNFI 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582813|ref|XP_002532180.1| conserved hypothetical protein [Ricinus communis] gi|223528128|gb|EEF30198.1| conserved hypothetical protein [Ricinus communis]

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 173/195 (88%), Positives = 185/195 (94%)

Query: 1   MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAY 60
           MLKN+FLDVK+KFETA+G+LRKEKITIAPEDPAAVSQYA VMKT+REKADLFSESQRI Y
Sbjct: 49  MLKNVFLDVKRKFETAIGILRKEKITIAPEDPAAVSQYAKVMKTIREKADLFSESQRIKY 108

Query: 61  TIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKG 120
           TIETRT  IPDARTYLLTL+EIR +RGL DE GAEAMMMDALEKVE E+KKPLMRNDKKG
Sbjct: 109 TIETRTKDIPDARTYLLTLREIRIKRGLTDELGAEAMMMDALEKVENELKKPLMRNDKKG 168

Query: 121 MALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD 180
           MALLTAEFDKINKKLGIRKEDLPKYEE LELKIAKAQLEELKKDALEAM+TQKKREEFKD
Sbjct: 169 MALLTAEFDKINKKLGIRKEDLPKYEEDLELKIAKAQLEELKKDALEAMDTQKKREEFKD 228

Query: 181 EEMVEVKSLDVRNFL 195
           EEM +VKSLD+RNF+
Sbjct: 229 EEMADVKSLDIRNFI 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819925|emb|CAN62814.1| hypothetical protein VITISV_031883 [Vitis vinifera]

 Score =  345 bits (884), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 173/195 (88%), Positives = 184/195 (94%)

Query: 1   MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAY 60
           MLKNIFL+VKKKFETA+GVLRKEKITI PEDPAAV+QYA VMKTVREKADLFSESQRI Y
Sbjct: 46  MLKNIFLEVKKKFETAMGVLRKEKITIDPEDPAAVNQYAKVMKTVREKADLFSESQRIQY 105

Query: 61  TIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKG 120
           TI+TRT GIPDARTYLLTLKEIR +RGL DE GAEAMMMDALEKVEKE+KKPLMRNDKKG
Sbjct: 106 TIQTRTQGIPDARTYLLTLKEIRIKRGLTDELGAEAMMMDALEKVEKELKKPLMRNDKKG 165

Query: 121 MALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD 180
           MALL AEFDK+NKKLG+RKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKR  FKD
Sbjct: 166 MALLMAEFDKVNKKLGVRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKRRNFKD 225

Query: 181 EEMVEVKSLDVRNFL 195
           E MV+VKSLD+RNF+
Sbjct: 226 EAMVDVKSLDIRNFI 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515821|ref|XP_004164946.1| PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial-like [Cucumis sativus]

 Score =  322 bits (824), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 161/195 (82%), Positives = 179/195 (91%)

Query: 1   MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAY 60
           MLKNIFL+VKKKFETAL V +KEKITI P+DPAAV+QYA VMK  REKADLFSESQRI Y
Sbjct: 46  MLKNIFLEVKKKFETALAVFKKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKY 105

Query: 61  TIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKG 120
           TI+TRT  IPDAR+YLL LKEIR +RGL D+ GAEAMM DALEKVEKE+KKPL+RNDKKG
Sbjct: 106 TIQTRTQDIPDARSYLLALKEIRIKRGLSDDLGAEAMMFDALEKVEKELKKPLLRNDKKG 165

Query: 121 MALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD 180
           M++L AEFDKIN+KLGIR+EDLPKYEEQLELKI+KAQLEE+KKDALEAMETQKKREEFKD
Sbjct: 166 MSVLMAEFDKINQKLGIRREDLPKYEEQLELKISKAQLEEMKKDALEAMETQKKREEFKD 225

Query: 181 EEMVEVKSLDVRNFL 195
           +EMV+ KSLDVRNFL
Sbjct: 226 DEMVDTKSLDVRNFL 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448424|ref|XP_004141966.1| PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial-like [Cucumis sativus]

 Score =  322 bits (824), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 161/195 (82%), Positives = 179/195 (91%)

Query: 1   MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAY 60
           MLKNIFL+VKKKFETAL V +KEKITI P+DPAAV+QYA VMK  REKADLFSESQRI Y
Sbjct: 46  MLKNIFLEVKKKFETALAVFKKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKY 105

Query: 61  TIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKG 120
           TI+TRT  IPDAR+YLL LKEIR +RGL D+ GAEAMM DALEKVEKE+KKPL+RNDKKG
Sbjct: 106 TIQTRTQDIPDARSYLLALKEIRIKRGLSDDLGAEAMMFDALEKVEKELKKPLLRNDKKG 165

Query: 121 MALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD 180
           M++L AEFDKIN+KLGIR+EDLPKYEEQLELKI+KAQLEE+KKDALEAMETQKKREEFKD
Sbjct: 166 MSVLMAEFDKINQKLGIRREDLPKYEEQLELKISKAQLEEMKKDALEAMETQKKREEFKD 225

Query: 181 EEMVEVKSLDVRNFL 195
           +EMV+ KSLDVRNFL
Sbjct: 226 DEMVDTKSLDVRNFL 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499758|gb|AFK37945.1| unknown [Lotus japonicus]

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/196 (81%), Positives = 179/196 (91%), Gaps = 1/196 (0%)

Query: 1   MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAY 60
           MLKN+F++VK KFETALG+L+KEKITIAPEDPAAVS Y NVMKTVREKA+L SESQ I  
Sbjct: 46  MLKNVFVEVKSKFETALGILKKEKITIAPEDPAAVSHYTNVMKTVREKANLLSESQDILA 105

Query: 61  TIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKG 120
           TIET T  IPDARTYLLTLKEIR ++GL+D+ GAEAMM+DAL+KVEKE+KKPL+RNDKKG
Sbjct: 106 TIETETQDIPDARTYLLTLKEIRTKKGLLDDLGAEAMMIDALDKVEKELKKPLLRNDKKG 165

Query: 121 MALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD 180
           M LL AEFDKINK+LGIRKEDLPKYEEQLELK+AKAQLEELKKD +EAMETQKKREEFKD
Sbjct: 166 MDLLLAEFDKINKQLGIRKEDLPKYEEQLELKLAKAQLEELKKDVVEAMETQKKREEFKD 225

Query: 181 E-EMVEVKSLDVRNFL 195
           E E V+VK+LD+RNFL
Sbjct: 226 EREAVDVKTLDIRNFL 241

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093896|ref|XP_002310038.1| predicted protein [Populus trichocarpa] gi|222852941|gb|EEE90488.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (791), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 154/195 (78%), Positives = 176/195 (90%)

Query: 1   MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAY 60
           MLK+IF D+K+KFETA+GVLRKEKITI PE+PAAVS YA VMKT+REKA LFSESQRI +
Sbjct: 46  MLKDIFRDIKQKFETAIGVLRKEKITIDPENPAAVSHYAKVMKTIREKAGLFSESQRIQF 105

Query: 61  TIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKG 120
           TIE  T  IPDART+ L L+EIR +RGL DE G EAM MDALEKVEKEIK+PLMRNDKKG
Sbjct: 106 TIEEETQDIPDARTFFLKLQEIRTKRGLSDELGVEAMTMDALEKVEKEIKQPLMRNDKKG 165

Query: 121 MALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD 180
           MALL AEFDK+NKKLG+R+EDLPKYEE+LELKIAKAQLEELKKDA+EAMETQ+KREEFK+
Sbjct: 166 MALLMAEFDKVNKKLGVRREDLPKYEEELELKIAKAQLEELKKDAVEAMETQRKREEFKN 225

Query: 181 EEMVEVKSLDVRNFL 195
           E+ V+V+SLD+RNFL
Sbjct: 226 EKEVDVRSLDIRNFL 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484162|gb|ABK93963.1| unknown [Populus trichocarpa]

 Score =  308 bits (788), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 154/195 (78%), Positives = 175/195 (89%)

Query: 1   MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAY 60
           MLK+IF D+K+KFETA+GVLRKEKITI PE+PAAVS YA VMKT+REKA LFSESQRI +
Sbjct: 46  MLKDIFRDIKQKFETAIGVLRKEKITIDPENPAAVSHYAKVMKTIREKAGLFSESQRIQF 105

Query: 61  TIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKG 120
           TIE  T  IPDART+ L L EIR +RGL DE G EAM MDALEKVEKEIK+PLMRNDKKG
Sbjct: 106 TIEEETQDIPDARTFFLKLGEIRTKRGLSDELGVEAMTMDALEKVEKEIKQPLMRNDKKG 165

Query: 121 MALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD 180
           MALL AEFDK+NKKLG+R+EDLPKYEE+LELKIAKAQLEELKKDA+EAMETQ+KREEFK+
Sbjct: 166 MALLMAEFDKVNKKLGVRREDLPKYEEELELKIAKAQLEELKKDAVEAMETQRKREEFKN 225

Query: 181 EEMVEVKSLDVRNFL 195
           E+ V+V+SLD+RNFL
Sbjct: 226 EKEVDVRSLDIRNFL 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512762|ref|XP_003525085.1| PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial-like [Glycine max]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 157/196 (80%), Positives = 176/196 (89%), Gaps = 1/196 (0%)

Query: 1   MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAY 60
           MLKNIF++VK KFETA+G+L+KEKITI PEDPAAVS YA VMKT+REKA L SESQ I  
Sbjct: 46  MLKNIFVEVKNKFETAIGILKKEKITIDPEDPAAVSHYAKVMKTIREKASLLSESQDILS 105

Query: 61  TIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKG 120
           TIE  T  IPDARTYLLTLKEIR +RGL D+ GAEA+M+DAL+KVEK++KKPL+RNDKKG
Sbjct: 106 TIEIETQDIPDARTYLLTLKEIRVKRGLTDDLGAEALMIDALDKVEKDLKKPLLRNDKKG 165

Query: 121 MALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD 180
           M LL AEFDKINKKLGIRKEDLPKYEE+LELK+AKAQLEELKKDALEAMETQKKREEFKD
Sbjct: 166 MDLLLAEFDKINKKLGIRKEDLPKYEEELELKVAKAQLEELKKDALEAMETQKKREEFKD 225

Query: 181 E-EMVEVKSLDVRNFL 195
           E E V+VK+LD+RNFL
Sbjct: 226 EPESVDVKTLDIRNFL 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645559|gb|ACU23274.1| unknown [Glycine max]

 Score =  305 bits (780), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 156/196 (79%), Positives = 175/196 (89%), Gaps = 1/196 (0%)

Query: 1   MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAY 60
           MLKNIF++VK KFETA+G+L+KEKITI PEDPAAVS YA VMKT+REKA L SESQ I  
Sbjct: 46  MLKNIFVEVKNKFETAIGILKKEKITIDPEDPAAVSHYAKVMKTIREKASLLSESQDILS 105

Query: 61  TIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKG 120
           TIE  T  IPDARTYLLTLKEIR +RGL D+ GAEA+M+DAL+KVEK++KKPL+RNDKKG
Sbjct: 106 TIEIETQDIPDARTYLLTLKEIRVKRGLTDDLGAEALMIDALDKVEKDLKKPLLRNDKKG 165

Query: 121 MALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD 180
           M L  AEFDKINKKLGIRKEDLPKYEE+LELK+AKAQLEELKKDALEAMETQKKREEFKD
Sbjct: 166 MDLFLAEFDKINKKLGIRKEDLPKYEEELELKVAKAQLEELKKDALEAMETQKKREEFKD 225

Query: 181 E-EMVEVKSLDVRNFL 195
           E E V+VK+LD+RNFL
Sbjct: 226 EPESVDVKTLDIRNFL 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2052464	240	MGP1 "MALE GAMETOPHYTE DEFECTI	1.0	0.812	0.738	1.4e-73
UNIPROTKB|Q7DM06	64	Q7DM06 "Putative ATP synthase	0.164	0.5	0.781	3.6e-09
UNIPROTKB|P42639	284	TPM1 "Tropomyosin alpha-1 chai	0.938	0.644	0.282	0.00022

TAIR|locus:2052464 MGP1 "MALE GAMETOPHYTE DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 144/195 (73%), Positives = 170/195 (87%)

Query:     1 MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAY 60
             MLK +F D+K KF+ A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI +
Sbjct:    46 MLKGVFFDIKNKFQAAVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKH 105

Query:    61 TIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKG 120
              I+T T  IPDAR YLL L+EIR RRGL DE GAEAMM +ALEKVEK+IKKPL+R+DKKG
Sbjct:   106 DIDTETQDIPDARAYLLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKG 165

Query:   121 MALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD 180
             M LL AEF+K NKKLGIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+D
Sbjct:   166 MDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQD 225

Query:   181 EEMVEVKSLDVRNFL 195
             EEM +VKSLD+RNF+
Sbjct:   226 EEMPDVKSLDIRNFI 240

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|Q7DM06 Q7DM06 "Putative ATP synthase subunit" [Glycine max (taxid:3847)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/32 (78%), Positives = 30/32 (93%)

Query:     1 MLKNIFLDVKKKFETALGVLRKEKITIAPEDP 32
             MLKNIF++VK KFETA+G+L+KEKITI PEDP
Sbjct:    33 MLKNIFVEVKNKFETAIGILKKEKITIDPEDP 64

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P42639 TPM1 "Tropomyosin alpha-1 chain" [Sus scrofa (taxid:9823)]

 Score = 111 (44.1 bits), Expect = 0.00022, P = 0.00022
 Identities = 55/195 (28%), Positives = 96/195 (49%)

Query:     2 LKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYT 61
             L++  + ++KK +     L  +K + AP+D     + A    T  E AD+ S ++RI   
Sbjct:    39 LEDELVSLQKKLKATEDEL--DKYSEAPKDAQEKLELAEKKATDAE-ADVASLNRRIQLV 95

Query:    62 IETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEK-EIKKPLMRNDKKG 120
              E          T L  L+E  E+     E G + +   A +  EK EI++  ++  K  
Sbjct:    96 EEELDRAQERLATALQKLEEA-EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHI 154

Query:   121 MALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAK-AQLEE-LKK--DALEAMETQKKR- 175
                   +++++ +KL I + DL + EE+ EL   K A+LEE LK   + L+++E Q ++ 
Sbjct:   155 AEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKY 214

Query:   176 --EEFKDEEMVEVKS 188
               +E K EE ++V S
Sbjct:   215 SQKEDKYEEEIKVLS 229


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.340    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      195       195   0.00078  111 3  10 23  0.37    33
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  554 (59 KB)
  Total size of DFA:  170 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.55u 0.20s 35.75t   Elapsed:  00:00:02
  Total cpu time:  35.55u 0.20s 35.75t   Elapsed:  00:00:02
  Start:  Fri May 10 14:48:36 2013   End:  Fri May 10 14:48:38 2013

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJ12	ATP7_ARATH	No assigned EC number	0.7384	1.0	0.8125	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019377001 SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (240 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 36/211 (17%), Positives = 58/211 (27%), Gaps = 65/211 (30%)

Query: 1   MLKNIFLDVKKKFETAL-----GVLRKEKITIAPEDPAAVSQYAN---VMKTVREK--AD 50
           ML+ +   +   + +         LR   I            Y N   V+  V+     +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 51  LFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIK 110
            F+ S +I  T  TR   + D       L         +D H         L   E    
Sbjct: 261 AFNLSCKILLT--TRFKQVTDF------LSAATTTHISLDHH------SMTLTPDE---- 302

Query: 111 KPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQ---LELKIAKA----------- 156
                      +LL        K L  R +DLP+         L I              
Sbjct: 303 ---------VKSLLL-------KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 157 -------QLEELKKDALEAMETQKKREEFKD 180
                  +L  + + +L  +E  + R+ F  
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
3o39_A	108	Periplasmic protein related to spheroblast format;	80.74

>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}

Probab=80.74  E-value=3.5  Score=31.24  Aligned_cols=53  Identities=15%  Similarity=0.198  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHhhhhccc--------------cccCCCCHHHHHHHHHHHHHHHHh------------cCCCChHHHHHH
Q 029312            8 DVKKKFETALGVLRKEK--------------ITIAPEDPAAVSQYANVMKTVREK------------ADLFSESQRIAY   60 (195)
Q Consensus         8 ~vqkkF~~~l~~lkk~k--------------i~id~~D~aAV~~YA~~~~~ir~k------------~gl~s~~e~I~~   60 (195)
                      +|+.+.+.++...+..-              |+-++-|++||..++..+..+...            ..|.+|+|+-+.
T Consensus        21 ~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~Li~ad~FDEaaar~l~~~~~~~~~e~~v~~~r~~~qmy~lLTPEQk~q~   99 (108)
T 3o39_A           21 AQKQQIREIMKGQRDQMKRPPLEERRAMHDIIASDTFDKAKAEAQIAKMEEQRKANMLAHMETQNKIYNILTPEQKKQF   99 (108)
T ss_dssp             HHHHHHHHHHHTTTTSCCCCCHHHHHHHHHHHSSSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            45666666666654442              444678999999999998887665            789999998663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00