Citrus Sinensis ID: 029322

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----

MEVTENFNQFTVGNLPTLMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNWGGVVHEKGLLPQDLPPWLTMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAFVTEKNEWKDSHHPFSILLMPRSLLIFKDDAYSGKCLYIDVLVV

cccccccccccccccccEEEEcccccHHHHHHHHHHHHccccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccccccEEEEcccccEEEEEcccccccccccccccccccccccccccccccccEEEEEcccEEEcEEcccccccccccccccc

ccccccHHHcEccccccEEEEcccccHHHHHHHHHHHHcccccHHHHHcccEEEcccccccccccccccccHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccccEEEEEEccccEEEEccccccccccccccccccccccccccccccccccEEEEEcccEEEEEEcccccccEEEEccEEc

mevtenfnqftvgnlptlMYVADFITNIEETQLLNniygaplskwkslknrrlqnwggvvhekgllpqdlppwlTMITRRIYeksglfpsaINHILIneyqpnqgimphqdgpayfPVVAILSlgspvvmdftphpklknniipessngdafvteknewkdshhpfsillmprsllifkddaysgkclyIDVLVV

mevtenfnqftvgnlpTLMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNWggvvhekgllpqdlppWLTMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHPKlknniipessnGDAFVTEKNEWKDSHHPFSILLMPRSLLIFKDDAYSGKCLYIDVLVV

MEVTENFNQFTVGNLPTLMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNWGGVVHEKGLLPQDLPPWLTMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAFVTEKNEWKDSHHPFSILLMPRSLLIFKDDAYSGKCLYIDVLVV

******FNQFTVGNLPTLMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNWGGVVHEKGLLPQDLPPWLTMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHPKLKNNII*******AFVTEKNEWKDSHHPFSILLMPRSLLIFKDDAYSGKCLYIDVLV*

*********FTVGNLPTLMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNWGGVVHEKGLLPQDLPPWLTMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHPKL****************EKNEWKDSHHPFSILLMPRSLLIFKDDAYSGKCLYIDVL**

MEVTENFNQFTVGNLPTLMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNWGGVVHEKGLLPQDLPPWLTMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAFVTEKNEWKDSHHPFSILLMPRSLLIFKDDAYSGKCLYIDVLVV

****ENFNQFTVGNLPTLMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNWGGVVHEKGLLPQDLPPWLTMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHP*************************SHHPFSILLMPRSLLIFKDDAYSGKCLYIDVLVV

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MEVTENFNQFTVGNLPTLMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNWGGVVHEKGLLPQDLPPWLTMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAFVTEKNEWKDSHHPFSILLMPRSLLIFKDDAYSGKCLYIDVLVV

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		195	2.2.26 [Sep-21-2011]
Q5PQ59		240	Alpha-ketoglutarate-depen	N/A	no	0.902	0.733	0.380	8e-32
Q8K2U2		235	Alpha-ketoglutarate-depen	yes	no	0.835	0.693	0.395	2e-31
Q6IQE9		234	Alpha-ketoglutarate-depen	yes	no	0.805	0.670	0.418	3e-31
Q3KRA9		238	Alpha-ketoglutarate-depen	no	no	0.810	0.663	0.408	2e-30
Q07G10		628	Alkylated DNA repair prot	no	no	0.610	0.189	0.346	1e-10
Q5UR03		210	Uncharacterized protein L	N/A	no	0.774	0.719	0.310	3e-09
A1A4L5		664	Alkylated DNA repair prot	no	no	0.615	0.180	0.340	1e-06
Q80Y20		664	Alkylated DNA repair prot	no	no	0.466	0.137	0.373	2e-05
Q95K79		664	Alkylated DNA repair prot	N/A	no	0.461	0.135	0.387	3e-05
Q96BT7		664	Alkylated DNA repair prot	no	no	0.461	0.135	0.377	9e-05

>sp\|Q5PQ59\|ALKB6_XENLA Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Xenopus laevis GN=alkbh6 PE=2 SV=1	Back alignment and function desciption

 Score =  136 bits (343), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 105/189 (55%), Gaps = 13/189 (6%)

Query: 1   MEVTENF---NQFTVGNLP-TLMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNW 56
           M+   NF   + F V  +P    YV ++I+  EE  LL  +Y AP  KW  L  R+LQNW
Sbjct: 1   MQACHNFPDLDSFLVEKIPLAAYYVPEYISKSEEEYLLRQVYNAPKPKWTQLSGRKLQNW 60

Query: 57  GGVVHEKGLLPQDLPPWLTMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQDGPAYF 116
           GG+ H +G++ + LP WL   T +I         + NH+L+NEY   +GIMPH+DGP Y+
Sbjct: 61  GGLPHSRGMVQEKLPSWLQKYTDQISSLGVFGDHSANHVLVNEYNAGEGIMPHEDGPMYY 120

Query: 117 PVVAILSLGSPVVMDF-TPHPKLKNNIIPESSNGDAFVTEKNEWKDSHHPFSILLMPRSL 175
           P V  +SLGS  ++DF  P     N    E+ N D   +     ++  H  S+LL PRSL
Sbjct: 121 PTVTTISLGSHTLLDFYVP----INKECQETQNQDKVAST----EEQRHMLSLLLEPRSL 172

Query: 176 LIFKDDAYS 184
           L+ +++ Y+
Sbjct: 173 LVVREELYT 181

Probable dioxygenase that requires molecular oxygen, alpha-ketoglutarate and iron.
Xenopus laevis (taxid: 8355)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp\|Q8K2U2\|ALKB6_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Mus musculus GN=Alkbh6 PE=2 SV=2	Back alignment and function description

>sp\|Q6IQE9\|ALKB6_DANRE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Danio rerio GN=alkbh6 PE=2 SV=1	Back alignment and function description

>sp\|Q3KRA9\|ALKB6_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Homo sapiens GN=ALKBH6 PE=1 SV=2	Back alignment and function description

>sp\|Q07G10\|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis GN=alkbh8 PE=2 SV=2	Back alignment and function description

>sp\|Q5UR03\|YL905_MIMIV Uncharacterized protein L905 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L905 PE=4 SV=1	Back alignment and function description

>sp\|A1A4L5\|ALKB8_BOVIN Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus GN=ALKBH8 PE=2 SV=1	Back alignment and function description

>sp\|Q80Y20\|ALKB8_MOUSE Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus GN=Alkbh8 PE=2 SV=1	Back alignment and function description

>sp\|Q95K79\|ALKB8_MACFA Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis GN=ALKBH8 PE=2 SV=1	Back alignment and function description

>sp\|Q96BT7\|ALKB8_HUMAN Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens GN=ALKBH8 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		195
225464442		262	PREDICTED: probable alpha-ketoglutarate-	0.943	0.702	0.727	3e-74
356559947		263	PREDICTED: probable alpha-ketoglutarate-	0.943	0.699	0.711	4e-72
357498515		266	Alkylated DNA repair protein alkB-like p	0.923	0.676	0.710	2e-71
356529364		545	PREDICTED: uncharacterized protein LOC10	0.943	0.337	0.700	1e-70
255570881		263	conserved hypothetical protein [Ricinus	0.917	0.680	0.704	2e-70
224124884		263	predicted protein [Populus trichocarpa]	0.907	0.673	0.698	3e-67
449451187		250	PREDICTED: probable alpha-ketoglutarate-	0.907	0.708	0.670	1e-64
449533804		248	PREDICTED: probable alpha-ketoglutarate-	0.907	0.713	0.670	1e-64
334186732		241	oxidoreductase [Arabidopsis thaliana] gi	0.871	0.705	0.666	1e-63
297804104		241	hypothetical protein ARALYDRAFT_329536 [	0.856	0.692	0.666	9e-63

>gi\|225464442\|ref\|XP_002265373.1\| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH6 [Vitis vinifera] gi\|296081091\|emb\|CBI18285.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  283 bits (723), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 136/187 (72%), Positives = 155/187 (82%), Gaps = 3/187 (1%)

Query: 1   MEVTENFNQFTVGNLPTLMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNWGGVV 60
           ME   N N+F VG  PTL Y+ DFIT+ ++TQLLNNIY AP+SKWKSLKNRRLQNWGGVV
Sbjct: 1   MEDEGNLNKFRVGPHPTLFYIPDFITDYQQTQLLNNIYQAPVSKWKSLKNRRLQNWGGVV 60

Query: 61  HEKGLLPQDLPPWLTMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQDGPAYFPVVA 120
           HEKGLL QDLP WLT IT RI+E+SGLFPSAINH+LINEY PNQGIMPHQDGPAYFPVVA
Sbjct: 61  HEKGLLSQDLPTWLTRITERIFEESGLFPSAINHVLINEYLPNQGIMPHQDGPAYFPVVA 120

Query: 121 ILSLGSPVVMDFTPHPKLK---NNIIPESSNGDAFVTEKNEWKDSHHPFSILLMPRSLLI 177
           ILSLGSPVVMDFTPH +L+   N+   ++S+  +F  E  +W D HHPFSILLMPRSLLI
Sbjct: 121 ILSLGSPVVMDFTPHSRLRLDTNDAEDKNSDDKSFEIETKKWLDDHHPFSILLMPRSLLI 180

Query: 178 FKDDAYS 184
           FKD+ +S
Sbjct: 181 FKDEMFS 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356559947\|ref\|XP_003548257.1\| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH6-like [Glycine max]	Back alignment and taxonomy information

>gi\|357498515\|ref\|XP_003619546.1\| Alkylated DNA repair protein alkB-like protein [Medicago truncatula] gi\|355494561\|gb\|AES75764.1\| Alkylated DNA repair protein alkB-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356529364\|ref\|XP_003533264.1\| PREDICTED: uncharacterized protein LOC100819925 [Glycine max]	Back alignment and taxonomy information

>gi\|255570881\|ref\|XP_002526392.1\| conserved hypothetical protein [Ricinus communis] gi\|223534254\|gb\|EEF35968.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|224124884\|ref\|XP_002319446.1\| predicted protein [Populus trichocarpa] gi\|222857822\|gb\|EEE95369.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449451187\|ref\|XP_004143343.1\| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH6-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449533804\|ref\|XP_004173861.1\| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH6-like, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|334186732\|ref\|NP_001190780.1\| oxidoreductase [Arabidopsis thaliana] gi\|5738380\|emb\|CAB52823.1\| putative protein [Arabidopsis thaliana] gi\|7268830\|emb\|CAB79035.1\| putative protein [Arabidopsis thaliana] gi\|332658912\|gb\|AEE84312.1\| oxidoreductase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297804104\|ref\|XP_002869936.1\| hypothetical protein ARALYDRAFT_329536 [Arabidopsis lyrata subsp. lyrata] gi\|297315772\|gb\|EFH46195.1\| hypothetical protein ARALYDRAFT_329536 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		195
MGI\|MGI:2142037		235	Alkbh6 "alkB, alkylation repai	0.830	0.689	0.404	2.6e-31
UNIPROTKB\|G3V9E2		238	Alkbh6 "Putative uncharacteriz	0.830	0.680	0.404	2.6e-31
UNIPROTKB\|Q3KRA9		238	ALKBH6 "Alpha-ketoglutarate-de	0.805	0.659	0.423	4.2e-31
ZFIN\|ZDB-GENE-060407-1		234	alkbh6 "alkB, alkylation repai	0.805	0.670	0.418	5.4e-31
UNIPROTKB\|F1N5I3		266	ALKBH6 "Uncharacterized protei	0.805	0.590	0.411	8.8e-31
UNIPROTKB\|F1RLH4		238	ALKBH6 "Uncharacterized protei	0.805	0.659	0.411	2.3e-30
FB\|FBgn0032259		228	CG6144 [Drosophila melanogaste	0.851	0.728	0.381	4.4e-29
UNIPROTKB\|F1PR83		266	ALKBH6 "Uncharacterized protei	0.805	0.590	0.388	1.9e-28
UNIPROTKB\|J9P9D3		280	ALKBH6 "Uncharacterized protei	0.805	0.560	0.388	1.9e-28
WB\|WBGene00007202		231	B0564.2 [Caenorhabditis elegan	0.835	0.705	0.384	1.4e-25

MGI\|MGI:2142037 Alkbh6 "alkB, alkylation repair homolog 6 (E. coli)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 72/178 (40%), Positives = 105/178 (58%)

Query:    10 FTVGNLPTLMY-VADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNWGGVVHEKGLLPQ 68
             F V   P L+Y V DFI+  EE  LL  ++ AP  KW  L  R+LQNWGG+ H +G++P+
Sbjct:    14 FRVEQAPPLIYYVPDFISKEEEEYLLRQVFNAPKPKWTQLSGRKLQNWGGLPHPRGMVPE 73

Query:    69 DLPPWLTMITRRIYEKSGLFPSA-INHILINEYQPNQGIMPHQDGPAYFPVVAILSLGSP 127
              LPPWL     ++ + S LF     NH+L+N+Y P +GIMPH+DGP Y+P V+ +SLGS 
Sbjct:    74 RLPPWLQRYVDKVSDLS-LFGGLPANHVLVNQYLPGEGIMPHEDGPLYYPTVSTISLGSH 132

Query:   128 VVMDFTPHPKLKNNIIPESSNGDAFVTEKNEWKDSHHPF-SILLMPRSLLIFKDDAYS 184
              V+DF   P+  ++ +P             + +    P  S+L+ PRSLL+ +  AY+
Sbjct:   133 TVLDFY-EPRQPDDDVP-----------MEQPRPPQRPITSLLVEPRSLLVLRGTAYT 178

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB\|G3V9E2 Alkbh6 "Putative uncharacterized protein LOC292780" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3KRA9 ALKBH6 "Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060407-1 alkbh6 "alkB, alkylation repair homolog 6 (E. coli)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N5I3 ALKBH6 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RLH4 ALKBH6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

FB\|FBgn0032259 CG6144 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PR83 ALKBH6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P9D3 ALKBH6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

WB\|WBGene00007202 B0564.2 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00038307001	SubName- Full=Chromosome undetermined scaffold_92, whole genome shotgun sequence; (251 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		195
COG3145		194	COG3145, AlkB, Alkylated DNA repair protein [DNA r	2e-06
pfam13532		190	pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su	4e-06

>gnl\|CDD\|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair]	Back alignment and domain information

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 71  PPWLTMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQD--GPAYFPVVAILSLGSPV 128
           PP L +           F      +L+N Y+P   I  HQD       P VA LSLG+P 
Sbjct: 85  PPLLALFHDLFGAAGYPFEGP-EAVLVNRYRPGASIGWHQDKDEEDDRPPVASLSLGAPC 143

Query: 129 VMDFTPH 135
           +      
Sbjct: 144 IFRLRGR 150

Length = 194

>gnl\|CDD\|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		195
KOG3200		224	consensus Uncharacterized conserved protein [Funct	100.0
PF13532		194	2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily;	99.98
TIGR00568		169	alkb DNA alkylation damage repair protein AlkB. Pr	99.97
PRK15401		213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	99.97
COG3145		194	AlkB Alkylated DNA repair protein [DNA replication	99.93
KOG3959		306	consensus 2-Oxoglutarate- and iron-dependent dioxy	99.88
KOG4176		323	consensus Uncharacterized conserved protein [Funct	99.86
PRK05467		226	Fe(II)-dependent oxygenase superfamily protein; Pr	98.19
smart00702		178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	98.16
KOG2731		378	consensus DNA alkylation damage repair protein [RN	98.14
PF03171		98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	96.94
COG3128		229	PiuC Uncharacterized iron-regulated protein [Funct	96.83
PLN00052		310	prolyl 4-hydroxylase; Provisional	96.46
PF13640		100	2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily;	95.74
PF12933		253	FTO_NTD: FTO catalytic domain; InterPro: IPR024367	95.69
PF09859		173	Oxygenase-NA: Oxygenase, catalysing oxidative meth	94.1
KOG1591		289	consensus Prolyl 4-hydroxylase alpha subunit [Amin	93.28

>KOG3200 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=7.7e-42  Score=263.15  Aligned_cols=176  Identities=49%  Similarity=0.831  Sum_probs=156.0

Q ss_pred             cccccccCCCCcEEEeCCCCCHHHHHHHHHHHHcCCCCCceeccCcceeecCcccccCCCCCCCCchhhHHHHHHHHHhc
Q 029322            6 NFNQFTVGNLPTLMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNWGGVVHEKGLLPQDLPPWLTMITRRIYEKS   85 (195)
Q Consensus         6 ~~~~~~~~~ipGl~~ipdfis~~e~~~L~~~l~~~p~~~w~~~~~rr~~~~G~~~~~~~~~~~~~P~~l~~l~~ri~~~~   85 (195)
                      +++.|+|+..|-..|||+||+++||+.++++|...|.++|+++.+||+|+||+.++.+|++++.+|+||+.+++.|. ..
T Consensus         2 ~~~~F~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqNyGGvvh~~glipeelP~wLq~~v~kin-nl   80 (224)
T KOG3200|consen    2 NIKKFIVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQNYGGVVHKTGLIPEELPPWLQYYVDKIN-NL   80 (224)
T ss_pred             CcceeEecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhhcCCccccCCcCccccCHHHHHHHHHhh-cc
Confidence            57889999999999999999999999999999999989999999999999999999999999999999999999998 58


Q ss_pred             CCCCCCcceEEeeeeCCCCCccccCCCCCCCCeEEEEecCCCeEEEeecCCCCCCCCCCCCCCCCcccccccccCCCCcc
Q 029322           86 GLFPSAINHILINEYQPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAFVTEKNEWKDSHHP  165 (195)
Q Consensus        86 gl~~~~~n~~liN~Y~~G~~I~~H~D~~~~~p~Ia~lSLgs~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (195)
                      |+|+...||+|||+|.||+||+||.|++.|.|+|+++||||+++|.|....++..+ +.-.+.++          -....
T Consensus        81 glF~s~~NHVLVNeY~pgqGImPHtDGPaf~piVstiSlGsh~vldf~~p~r~e~~-d~te~~dq----------p~R~~  149 (224)
T KOG3200|consen   81 GLFKSPANHVLVNEYLPGQGIMPHTDGPAFHPIVSTISLGSHTVLDFYDPVRQEVN-DGTESKDQ----------PLRYL  149 (224)
T ss_pred             cccCCCcceeEeecccCCCCcCcCCCCCcccceEEEEecCCceEEecccccccccC-CccccCCC----------Cccce
Confidence            99999999999999999999999999999999999999999999999886532211 11111111          13456


Q ss_pred             EEEEeCCCeEEeeccccccccccCcCcc
Q 029322          166 FSILLMPRSLLIFKDDAYSGKCLYIDVL  193 (195)
Q Consensus       166 ~~i~L~~gSLlIm~g~ar~~w~H~Ip~v  193 (195)
                      +++.|+++||+|+.++|+.++.|||..-
T Consensus       150 fsllleprslLilkd~aYtd~LHgIs~s  177 (224)
T KOG3200|consen  150 FSLLLEPRSLLILKDDAYTDFLHGISDS  177 (224)
T ss_pred             eeeeeccceEEEEcCcHHHHHHhhcccC
Confidence            7899999999999999999999999753

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A	Back alignment and domain information

>TIGR00568 alkb DNA alkylation damage repair protein AlkB	Back alignment and domain information

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional	Back alignment and domain information

>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]	Back alignment and domain information

>KOG4176 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional	Back alignment and domain information

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues	Back alignment and domain information

>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]	Back alignment and domain information

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit	Back alignment and domain information

>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]	Back alignment and domain information

>PLN00052 prolyl 4-hydroxylase; Provisional	Back alignment and domain information

>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A	Back alignment and domain information

>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family	Back alignment and domain information

>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		195
3tht_A		345	Crystal Structure And Rna Binding Properties Of The		7e-06
3thp_A		345	Crystal Structure And Rna Binding Properties Of The		7e-05

>pdb|3THT|A Chain A, Crystal Structure And Rna Binding Properties Of The RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna Hypermodification, Northeast Structural Genomics Consortium Target Hr5601b Length = 345

Back alignment and structure

Iteration: 1

Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 8/98 (8%) Query: 46 KSLKNRRLQNWGGVVH-EKGLLPQDLP--PWLTMITRRIYEK---SGLFPSAINHILINE 99 KSLK+RR++++G H E + +D P L I EK G + + IN+ Sbjct: 145 KSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQMTINQ 204 Query: 100 YQPNQGIMPHQDGPAYFP-VVAILSLGSPVVMDFTPHP 136 Y+P QGI H D + F + LSLGS +VMDF HP Sbjct: 205 YEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFK-HP 241

PyMOL of 3tht

>pdb|3THP|A Chain A, Crystal Structure And Rna Binding Properties Of The RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna Hypermodification, Northeast Structural Genomics Consortium Target Hr5601b Length = 345

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		195
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	7e-31
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	5e-13

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345	Back alignment and structure

 Score =  114 bits (285), Expect = 7e-31
 Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 39/180 (21%)

Query: 16  PTLMYVADFITNIEETQLLNNIY----GAPLSKWKSLKNRRLQNWGGV-------VHEKG 64
           P LM V + I++ EE  LL ++         +  KSLK+RR++++G         V +  
Sbjct: 111 PGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDK 170

Query: 65  LLPQDLPPWLTMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQDG-PAYFPVVAILS 123
            L   LP        + + + G      + + IN+Y+P QGI  H D   A+   +  LS
Sbjct: 171 PLSGGLPDICESFLEK-WLRKGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLS 229

Query: 124 LGSPVVMDFTPHPKLKNNIIPESSNGDAFVTEKNEWKDSHHPFSILLMPRSLLIFKDDAY 183
           LGS +VMDF     +                             ++L  RSLL+   ++ 
Sbjct: 230 LGSEIVMDFKHPDGIA--------------------------VPVMLPRRSLLVMTGESR 263

PyMOL of 3tht

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		195
3tht_A		345	Alkylated DNA repair protein ALKB homolog 8; struc	100.0
2iuw_A		238	Alkylated repair protein ALKB homolog 3; oxidoredu	100.0
3s57_A		204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	100.0
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	99.97
2jig_A		224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	97.83
3dkq_A		243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	97.68
3itq_A		216	Prolyl 4-hydroxylase, alpha subunit domain protei;	97.66
3lfm_A		495	Protein FTO; FAT MASS and obesity associated (FTO)	97.59
2hbt_A		247	EGL nine homolog 1; prolyl hydroxylase, hypoxia in	95.25
3kt7_A		633	PKHD-type hydroxylase TPA1; double-stranded beta h	88.18

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*	Back alignment and structure

Probab=100.00  E-value=3.5e-37  Score=264.86  Aligned_cols=161  Identities=29%  Similarity=0.389  Sum_probs=123.3

Q ss_pred             ccccccCCCC-cEEEeCCCCCHHHHHHHHHHHHcCCC----CCceeccCcceeecCcccccCCC-------CCCCCchhh
Q 029322            7 FNQFTVGNLP-TLMYVADFITNIEETQLLNNIYGAPL----SKWKSLKNRRLQNWGGVVHEKGL-------LPQDLPPWL   74 (195)
Q Consensus         7 ~~~~~~~~ip-Gl~~ipdfis~~e~~~L~~~l~~~p~----~~w~~~~~rr~~~~G~~~~~~~~-------~~~~~P~~l   74 (195)
                      +..+++..+| |++|+|||||++||++|++.|.-.+.    ..|.++++||+++||+.|+|++.       .+.+||++|
T Consensus       101 ~~~~~~~~lp~Gl~~~p~fis~~Ee~~Ll~~i~w~~~~~~~~~~~~l~~Rr~~~yG~~Y~Ys~~~~~~~~p~p~~~P~~L  180 (345)
T 3tht_A          101 WKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDIC  180 (345)
T ss_dssp             EEEEECCSCCTTEEEETTCSCHHHHHHHHTTCC----------------CEEECCC------------------CCCHHH
T ss_pred             ccccccccCCCceEEEcCcCCHHHHHHHHHhcccCCccccccCcccccCceEEEECCcccccccccccCCCCCcCcCHHH
Confidence            4455666666 99999999999999999888764321    13667889999999998888653       146799999


Q ss_pred             HHHHHHHHHhcCCCCCCcceEEeeeeCCCCCccccCCCCC-CCCeEEEEecCCCeEEEeecCCCCCCCCCCCCCCCCccc
Q 029322           75 TMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQDGPA-YFPVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAFV  153 (195)
Q Consensus        75 ~~l~~ri~~~~gl~~~~~n~~liN~Y~~G~~I~~H~D~~~-~~p~Ia~lSLgs~~~~~f~~~~~~~~~~~~~~~~~~~~~  153 (195)
                      ..+++++.+ .++++..||+||||+|++|++|+||+|++. +.+.|++||||++|+|.|++..                 
T Consensus       181 ~~l~~r~~~-~~~~~~~~n~~lvN~Y~~G~~I~~H~D~~~~~~~~I~slSLG~~~~f~f~~~~-----------------  242 (345)
T 3tht_A          181 ESFLEKWLR-KGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPD-----------------  242 (345)
T ss_dssp             HHHHHHHHH-HTSCSSCCSEEEEEEECTTCCEEEECCCTTTBCSCEEEEEESSCEEEEEECTT-----------------
T ss_pred             HHHHHHHHh-cccCCCCCCEEEEEEecCCCCEeeccCCchhcCCeEEEEECCCceeEEEccCC-----------------
Confidence            999999975 577778999999999999999999999974 4599999999999999999852                 


Q ss_pred             ccccccCCCCccEEEEeCCCeEEeeccccccccccCcCccc
Q 029322          154 TEKNEWKDSHHPFSILLMPRSLLIFKDDAYSGKCLYIDVLV  194 (195)
Q Consensus       154 ~~~~~~~~~~~~~~i~L~~gSLlIm~g~ar~~w~H~Ip~v~  194 (195)
                               +..+++.|++||||||+|++|+.|+|+||+++
T Consensus       243 ---------~~~~~l~L~~gsLlvM~G~~r~~w~H~I~~~~  274 (345)
T 3tht_A          243 ---------GIAVPVMLPRRSLLVMTGESRYLWTHGITCRK  274 (345)
T ss_dssp             ---------SCEEEEEECTTEEEEECTHHHHTSEEEECCCS
T ss_pred             ---------CceEEEEcCCCcEEEEChHHhhceEccCCccc
Confidence                     34679999999999999999999999999976

PyMOL of 3tht

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10	Back alignment and structure

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*	Back alignment and structure

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...	Back alignment and structure

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A	Back alignment and structure

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}	Back alignment and structure

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}	Back alignment and structure

>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens}	Back alignment and structure

>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*	Back alignment and structure

>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		195
d2iuwa1		210	b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s	5e-13
d2fdia1		200	b.82.2.10 (A:15-214) Alkylated DNA repair protein	2e-10

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 5e-13
 Identities = 30/201 (14%), Positives = 54/201 (26%), Gaps = 37/201 (18%)

Query: 2   EVTENFNQFTVGNLPT----LMYVADFITNIEETQLLNNIY-------GAPLSKWKSLKN 50
            V +    + +   PT    +     F+   E   +L  +           + +  + + 
Sbjct: 1   RVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQ 60

Query: 51  RRLQNWGGVVHEK-----GLLPQDLPPWLTMITRRIYEKSGLFPSAINHILINEYQPNQG 105
            RL  W G +                P L  +  RI E +G      + +          
Sbjct: 61  PRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTF--NSLLCNLYRNEKDS 118

Query: 106 IMPHQDGPAYF---PVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAFVTEKNEWKDS 162
           +  H D        P++A LS G+    +    P  + N                     
Sbjct: 119 VDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDY----------------TY 162

Query: 163 HHPFSILLMPRSLLIFKDDAY 183
                I L   +LLI +    
Sbjct: 163 VERVKIPLDHGTLLIMEGATQ 183

PyMOL of d2iuwa1

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		195
d2iuwa1		210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	100.0
d2fdia1		200	Alkylated DNA repair protein AlkB {Escherichia col	99.97
d2fcta1		308	Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom	82.05

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=224.30  Aligned_cols=171  Identities=20%  Similarity=0.288  Sum_probs=127.6

Q ss_pred             ccccccccccCC----CCcEEEeCCCCCHHHHHHHHHHHHcCCCCCceec---------cCcceeecCc--ccccCCC--
Q 029322            3 VTENFNQFTVGN----LPTLMYVADFITNIEETQLLNNIYGAPLSKWKSL---------KNRRLQNWGG--VVHEKGL--   65 (195)
Q Consensus         3 ~~~~~~~~~~~~----ipGl~~ipdfis~~e~~~L~~~l~~~p~~~w~~~---------~~rr~~~~G~--~~~~~~~--   65 (195)
                      |++---.|.+..    ++||.|+||||+++|++.|++.|.+.  .+|.+.         ..+|.++|++  .|.|++.  
T Consensus         2 ~~~~~~~~~~~~~p~g~~~l~y~p~fLs~~e~~~Ll~~L~~e--~~w~~~~~~~~g~~~~~pR~~~~~~d~~y~y~~~~~   79 (210)
T d2iuwa1           2 VIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQD--VPWKQRTGIREDITYQQPRLTAWYGELPYTYSRITM   79 (210)
T ss_dssp             ECCSSEEEEEECCSSSCEEEEEETTSSCHHHHHHHHHHHHHH--SCCBCCEEESSSCEEECSSEEEEEECCCTTSCHHHH
T ss_pred             cccccCceEeccCCCCcceEEEECCcCCHHHHHHHHHHHHhh--CCccccceeccCcccceeeeeEEecCcCcccccccc
Confidence            333334445554    44799999999999999999999875  357632         2345666643  3444442  


Q ss_pred             -CCCCCchhhHHHHHHHHHhcCCCCCCcceEEeeeeCCC-CCccccCCCCCCC---CeEEEEecCCCeEEEeecCCCCCC
Q 029322           66 -LPQDLPPWLTMITRRIYEKSGLFPSAINHILINEYQPN-QGIMPHQDGPAYF---PVVAILSLGSPVVMDFTPHPKLKN  140 (195)
Q Consensus        66 -~~~~~P~~l~~l~~ri~~~~gl~~~~~n~~liN~Y~~G-~~I~~H~D~~~~~---p~Ia~lSLgs~~~~~f~~~~~~~~  140 (195)
                       ...+||++|..+.+++.+..+   ..+|+|++|.|.+| ++|+||+|++.++   +.||+||||++|+|.|+++...+.
T Consensus        80 ~~~~~~~~~l~~l~~~~~~~~~---~~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~~~~~~~  156 (210)
T d2iuwa1          80 EPNPHWHPVLRTLKNRIEENTG---HTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEE  156 (210)
T ss_dssp             CCBSSCCHHHHHHHHHHHHHHS---CCCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC---
T ss_pred             ccCCCCcHHHHHHHHhhhhhcC---ccchhhhhhccccCCCccccCcCCchhcccCCceeEEeeCCceEEEEcccccccc
Confidence             246799999999999987655   57899999998765 7999999998543   789999999999999998752111


Q ss_pred             CCCCCCCCCCcccccccccCCCCccEEEEeCCCeEEeeccccccccccCcCccc
Q 029322          141 NIIPESSNGDAFVTEKNEWKDSHHPFSILLMPRSLLIFKDDAYSGKCLYIDVLV  194 (195)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~gSLlIm~g~ar~~w~H~Ip~v~  194 (195)
                      ..                ......+++|.|++||||||+|++|+.|+|+||+.+
T Consensus       157 ~~----------------~~~~~~~~~i~L~~gsl~vm~g~~~~~~~H~Ip~~~  194 (210)
T d2iuwa1         157 NG----------------DYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEY  194 (210)
T ss_dssp             ---------------------CCCEEEEEECTTCEEEEEETHHHHEEEEECCCS
T ss_pred             CC----------------ccCCCceEEEEcCCCCEEEeCchhhCceEccCCccC
Confidence            10                012457899999999999999999999999999753

PyMOL of d2iuwa1

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}	Back information, alignment and structure