Citrus Sinensis ID: 029325

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MTSAATLSPFIVINLSSAKLDHSSPSPTANLSFHHNRHTNHNKTLSELSICHAQLNYGSAGEDPDEIGEAFFDEGVDGGAIMDDISDDEDDMDSSVDLLIRFLQATFKKVSKRAKKASRSILPAAISPKLVSFAVDGILLLASLSILKALLEVVCSIGGTVFVLILLLRFIWAAISYFQSSGNSFNQGGSSFAAT
Secondary Structure (PSIPRED)
cccccccccEEEEEccccccccccccccccccccccccccccccccccEEEEEEccccccccccHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcccccEEEEEHccccccccccccccccccccccccccccccccEEEEccEcccccccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mtsaatlsPFIVINLssakldhsspsptanlsfhhnrhtnhnktlSELSICHAQlnygsagedpdeigeaffdegvdggaimddisddeddmdSSVDLLIRFLQATFKKVSKRAKKASRsilpaaispklvSFAVDGILLLASLSILKALLEVVCSIGGTVFVLILLLRFIWAAISYFqssgnsfnqggssfaat
Flexible Loop (DISEMBL)
mtsaatlsPFIVINLSSAKLDHSSPSPTANLSFHHNRHTNHNKTLSELSICHAQLNYGSAGEDPDEIGEAFFDEGVDGGAIMDDISDDEDDMDSSVDLLIRFLQATFKKVSKRAKKasrsilpaaispkLVSFAVDGILLLASLSILKALLEVVCSIGGTVFVLILLLRFIWAAISYFQSsgnsfnqgGSSFAAT
Low Complexity Region (SEG)
MTSAATLSPFIVINLSSAKLDHSSPSPTANLSFHHNRHTNHNKTLSELSICHAQLNYGSAGEDPDEIGEAFFDEGVDGGAIMddisddeddmdssvdLLIRFLQATFkkvskrakkasrsILPAAISPKLVSFAVDGilllaslsilkallEVVCSIGGTVFVLILLLRFIWAAISYfqssgnsfnqggssfAAT
Disordered region (IsUnstruct)
*********FIVIN********************************ELSICHAQLNYG*********GEAFFDEGVDGGAI**************VDLLIRFLQATFKKVS*******RSILPAAISPKLVSFAVDGILLLASLSILKALLEVVCSIGGTVFVLILLLRFIWAAISYFQ****************
Disordered Region (DISOPRED)
******LSPFIVINLSSAKLDHSSPSPTANLS***************LSICHAQLNYG*AGEDPDEIGEAFFDEGVDGGAIMDDI*****DMDSSVDLLIRFLQATFKK***********ILPAAISPKLVSFAVDGILLLASLSILKALLEVVCSIGGTVFVLILLLRFIWAAISYFQSS**************
Disordered Region (DISEMBL)
MTSAATLSPFIVINLSSAK*********ANLSFHHNRHTNHNKTLSELSICHAQLNYGSAGEDPDEIGEAFFDEGVDGGAIMDDISDDEDDMDSSVDLLIRFLQATFK**********RSILPAAISPKLVSFAVDGILLLASLSILKALLEVVCSIGGTVFVLILLLRFIWAAISYFQSSGNSFN*********
Disordered Region (DISPRO)
*****TLSPFIVINLSSAKL**SSPSPTANLSFHHNRHTNHNKTLSELSICHAQLNYGSAGEDPDEIGEAFFDEGVDGGA*********DDMDSSVDLLIRFLQATFKKVSKRAKKASRSILPAAISPKLVSFAVDGILLLASLSILKALLEVVCSIGGTVFVLILLLRFIWAAISYFQSSG*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSAATLSPFIVINLSSAKLDHSSPSPTANLSFHHNRHTNHNKTLSELSICHAQLNYGSAGEDPDEIGEAFFDEGVDGGAIMDDISDDEDDMDSSVDLLIRFLQATFKKVSKRAKKASRSILPAAISPKLVSFAVDGILLLASLSILKALLEVVCSIGGTVFVLILLLRFIWAAISYFQSSGNSFNQGGSSFAAT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
356497816	195	PREDICTED: uncharacterized protein LOC10	0.892	0.892	0.609	8e-43
356500831	193	PREDICTED: uncharacterized protein LOC10	0.897	0.906	0.596	1e-42
255558302	254	conserved hypothetical protein [Ricinus	0.876	0.673	0.593	4e-42
224102473	203	predicted protein [Populus trichocarpa]	0.723	0.694	0.636	4e-42
225424833	198	PREDICTED: uncharacterized protein LOC10	0.897	0.883	0.561	4e-37
296086468	210	unnamed protein product [Vitis vinifera]	0.887	0.823	0.562	3e-36
357486397	192	hypothetical protein MTR_5g037230 [Medic	0.892	0.906	0.554	6e-35
297841727	191	hypothetical protein ARALYDRAFT_894783 [	0.461	0.471	0.755	9e-32
21536619	192	unknown [Arabidopsis thaliana] gi|159025	0.461	0.468	0.755	1e-31
18409408	192	short hypocotyl in white light1 protein	0.461	0.468	0.744	4e-31

>gi|356497816|ref|XP_003517753.1| PREDICTED: uncharacterized protein LOC100785194 [Glycine max]

 Score =  178 bits (452), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 111/182 (60%), Positives = 135/182 (74%), Gaps = 8/182 (4%)

Query: 16  SSAKLDHSSPS--PTANLSFHHNRHTNHNKTLSELSICHAQLNYGSAGEDPDEIGEAFFD 73
           S  KL H S +  P +   FH   + NH +    ++ CH +LN  S G +   + EA FD
Sbjct: 19  SHTKLCHFSANNVPFSIQPFHSRFYHNH-RLKPIITNCHGKLN-SSGGGEAYAMDEAGFD 76

Query: 74  EGVDGGAIMDDISDDEDDMDSSVDLLIRFLQATFKKVSKRAKKASRSILPAAISPKLVSF 133
           E  DG   +++ SDDEDD +SSVDLLIRFLQ+ FKKVSKRAKKASRS+LP  ISP+LVSF
Sbjct: 77  E-YDG---VEEESDDEDDAESSVDLLIRFLQSMFKKVSKRAKKASRSVLPTVISPQLVSF 132

Query: 134 AVDGILLLASLSILKALLEVVCSIGGTVFVLILLLRFIWAAISYFQSSGNSFNQGGSSFA 193
           AVDG LLLASLS++KALLEV+C++GGTVF  IL+LR IWAA+SYFQSSGNSFNQGG+SF 
Sbjct: 133 AVDGTLLLASLSVVKALLEVICTLGGTVFAAILVLRVIWAAVSYFQSSGNSFNQGGNSFG 192

Query: 194 AT 195
           A 
Sbjct: 193 AV 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500831|ref|XP_003519234.1| PREDICTED: uncharacterized protein LOC100784688 [Glycine max]

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 140/191 (73%), Gaps = 16/191 (8%)

Query: 12  VINLS----SAKLDH--SSPSPTANLSFHHNRHTNHNKTLSEL-SICHAQLNYGSAGEDP 64
           +INL+    S+K  H  S+ +P +   FH   +  HN+ L  + + CH +LN    G   
Sbjct: 11  LINLTRPSHSSKHRHFSSNNAPFSIQPFHSGFY--HNRRLKPIITNCHGKLNSSGGGYAM 68

Query: 65  DEIGEAFFDEGVDGGAIMDDISDDEDDMDSSVDLLIRFLQATFKKVSKRAKKASRSILPA 124
           DE G   FDE  DG   ++D SDDEDD +SSVDLLIRFLQ+ FKKVSKRAKKASRS+LP 
Sbjct: 69  DEAG---FDE-YDG---VEDESDDEDDAESSVDLLIRFLQSMFKKVSKRAKKASRSVLPT 121

Query: 125 AISPKLVSFAVDGILLLASLSILKALLEVVCSIGGTVFVLILLLRFIWAAISYFQSSGNS 184
            ISP+LVSFAVDG LLLASLS++KALLE++C++GGTVF  IL+LR IWAA+SYFQSSGNS
Sbjct: 122 VISPQLVSFAVDGTLLLASLSVVKALLEIICTLGGTVFAAILVLRVIWAAVSYFQSSGNS 181

Query: 185 FNQGGSSFAAT 195
           FNQGG+SF A 
Sbjct: 182 FNQGGNSFGAV 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558302|ref|XP_002520178.1| conserved hypothetical protein [Ricinus communis] gi|223540670|gb|EEF42233.1| conserved hypothetical protein [Ricinus communis]

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 132/177 (74%), Gaps = 6/177 (3%)

Query: 22  HSSPSPTANLSFHHNRHT----NHNKTLSELSICHAQLNYGSAGEDPDEIGEAFFDEGVD 77
           H S SP  NL FHH          +  +  + ICHA+L+  SAG+  +++GE FFD+  D
Sbjct: 75  HHSLSPPQNLPFHHQSSHFHHLTQSYKIPNIIICHAKLD-ASAGDFHEDVGEMFFDDNND 133

Query: 78  GGAIMDDISDDEDDMDSSVDLLIRFLQATFKKVSKRAKKASRSILPAAISPKLVSFAVDG 137
                 +  +D+DD +SS+DLL +FLQ+ FKK+SKRAKKASRSILP+ ISP+LVSFAVDG
Sbjct: 134 L-VEDYESDEDDDDTESSIDLLFKFLQSMFKKISKRAKKASRSILPSVISPQLVSFAVDG 192

Query: 138 ILLLASLSILKALLEVVCSIGGTVFVLILLLRFIWAAISYFQSSGNSFNQGGSSFAA 194
           ILLLA+LSI+KALLEVVC++G TVF +ILLLR +WAAISYFQSSGN+F QGGSSF  
Sbjct: 193 ILLLAALSIVKALLEVVCTLGSTVFTVILLLRVVWAAISYFQSSGNTFYQGGSSFGG 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102473|ref|XP_002312691.1| predicted protein [Populus trichocarpa] gi|222852511|gb|EEE90058.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 93/146 (63%), Positives = 118/146 (80%), Gaps = 5/146 (3%)

Query: 50  ICHAQLNYGSAGEDPDEIGEAFFDEGVDGGAIMDDISDDEDDMDSSVDLLIRFLQATFKK 109
           ICH +L+     + P+EI E FFD+  D   + ++   DED+ +SS+DLLIRFLQ+ FKK
Sbjct: 59  ICHGKLD----SDVPEEINEVFFDDNYDM-MVDEEEISDEDETESSIDLLIRFLQSMFKK 113

Query: 110 VSKRAKKASRSILPAAISPKLVSFAVDGILLLASLSILKALLEVVCSIGGTVFVLILLLR 169
           +SKRAKKASRS+LPA ISP+LVSFAVDGILLLA+LSI+KALLEVVC++G TVFV+ILLLR
Sbjct: 114 LSKRAKKASRSMLPAVISPQLVSFAVDGILLLAALSIVKALLEVVCTLGSTVFVVILLLR 173

Query: 170 FIWAAISYFQSSGNSFNQGGSSFAAT 195
            +W A+SYFQSS N+ ++GGSSF  T
Sbjct: 174 VVWTAVSYFQSSENTSSKGGSSFGTT 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424833|ref|XP_002272743.1| PREDICTED: uncharacterized protein LOC100243345 [Vitis vinifera]

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 143/194 (73%), Gaps = 19/194 (9%)

Query: 11  IVINL---SSAKLD-HSSPSPT---ANLSFHHNRHTNHNKTLSELSICHAQLNYGSAGED 63
           ++INL   ++ KL+ + +PSP       S H    T+     + L+  HA+L+ GSAGE 
Sbjct: 11  LIINLNPTATTKLNLNLTPSPNFACPPQSLHLRHRTSPTGNPTTLT-SHARLS-GSAGEA 68

Query: 64  PDEIGEAFFDEGVDGGAIMDDI--SDDEDDMDSSVDLLIRFLQATFKKVSKRAKKASRSI 121
           P+EI E+FF++        +D+  SD+ED+ +SS DLLI FLQ+ FKK SK AKKASRS+
Sbjct: 69  PEEIDESFFED--------EDLIESDEEDETESSADLLIEFLQSMFKKASKHAKKASRSV 120

Query: 122 LPAAISPKLVSFAVDGILLLASLSILKALLEVVCSIGGTVFVLILLLRFIWAAISYFQSS 181
           LPAAISP+LVSFAVDG+L+LASLSI+KALLEV C++GGTVFV+ILLLR IWA +SYFQ+S
Sbjct: 121 LPAAISPQLVSFAVDGVLILASLSIIKALLEVFCTLGGTVFVVILLLRVIWATVSYFQTS 180

Query: 182 GNSFNQGGSSFAAT 195
           GN F+QGG+SF  T
Sbjct: 181 GNGFSQGGTSFGTT 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086468|emb|CBI32057.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 142/192 (73%), Gaps = 19/192 (9%)

Query: 11  IVINL---SSAKLD-HSSPSP---TANLSFHHNRHTNHNKTLSELSICHAQLNYGSAGED 63
           ++INL   ++ KL+ + +PSP       S H    T+     + L+  HA+L+ GSAGE 
Sbjct: 10  LIINLNPTATTKLNLNLTPSPNFACPPQSLHLRHRTSPTGNPTTLT-SHARLS-GSAGEA 67

Query: 64  PDEIGEAFFDEGVDGGAIMDDI--SDDEDDMDSSVDLLIRFLQATFKKVSKRAKKASRSI 121
           P+EI E+FF++        +D+  SD+ED+ +SS DLLI FLQ+ FKK SK AKKASRS+
Sbjct: 68  PEEIDESFFED--------EDLIESDEEDETESSADLLIEFLQSMFKKASKHAKKASRSV 119

Query: 122 LPAAISPKLVSFAVDGILLLASLSILKALLEVVCSIGGTVFVLILLLRFIWAAISYFQSS 181
           LPAAISP+LVSFAVDG+L+LASLSI+KALLEV C++GGTVFV+ILLLR IWA +SYFQ+S
Sbjct: 120 LPAAISPQLVSFAVDGVLILASLSIIKALLEVFCTLGGTVFVVILLLRVIWATVSYFQTS 179

Query: 182 GNSFNQGGSSFA 193
           GN F+QGG+SF 
Sbjct: 180 GNGFSQGGTSFV 191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486397|ref|XP_003613486.1| hypothetical protein MTR_5g037230 [Medicago truncatula] gi|355514821|gb|AES96444.1| hypothetical protein MTR_5g037230 [Medicago truncatula] gi|388498656|gb|AFK37394.1| unknown [Medicago truncatula]

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 134/191 (70%), Gaps = 17/191 (8%)

Query: 12  VINLSSA---KLDHSSPSPTANLSFHHNR-----HTNHNKTLSELSICHAQLNYGSAGED 63
           +INL+S+    L H SP+    L  HH       + NH   L  ++ C+++LN  S GE 
Sbjct: 9   LINLTSSPRSNLHHFSPNNVHIL--HHQPFPSKLYYNHRSNLKTIN-CNSKLNNSSGGEA 65

Query: 64  PDEIGEAFFDEGVDGGAIMDDISDDEDDMDSSVDLLIRFLQATFKKVSKRAKKASRSILP 123
            +       DEGV GG    +   DEDD +SSVDLLI+FLQ+ FKK++KRAKKASRS+LP
Sbjct: 66  YE------IDEGVFGGYDGIEEESDEDDAESSVDLLIKFLQSMFKKMAKRAKKASRSVLP 119

Query: 124 AAISPKLVSFAVDGILLLASLSILKALLEVVCSIGGTVFVLILLLRFIWAAISYFQSSGN 183
             ISP+LVSFAVDG LLLA+LS++KALLEV+C+IGGTVF  IL LR IWAA+S+FQS+GN
Sbjct: 120 TVISPQLVSFAVDGTLLLATLSVVKALLEVICNIGGTVFAAILALRVIWAAVSHFQSNGN 179

Query: 184 SFNQGGSSFAA 194
           SFNQG +SF A
Sbjct: 180 SFNQGNNSFGA 190

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841727|ref|XP_002888745.1| hypothetical protein ARALYDRAFT_894783 [Arabidopsis lyrata subsp. lyrata] gi|297334586|gb|EFH65004.1| hypothetical protein ARALYDRAFT_894783 [Arabidopsis lyrata subsp. lyrata]

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 68/90 (75%), Positives = 80/90 (88%)

Query: 96  VDLLIRFLQATFKKVSKRAKKASRSILPAAISPKLVSFAVDGILLLASLSILKALLEVVC 155
           VDLLIRFL++ FKKVSKRAKKASR ILPAA+SP+LVSFAVDGILLL SLSI +A LEV+C
Sbjct: 96  VDLLIRFLRSMFKKVSKRAKKASRRILPAAMSPRLVSFAVDGILLLGSLSITRAFLEVIC 155

Query: 156 SIGGTVFVLILLLRFIWAAISYFQSSGNSF 185
           ++GGTVF +ILL+R  WAA S+FQ+ GNSF
Sbjct: 156 NLGGTVFTVILLIRLFWAAASFFQTYGNSF 185

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536619|gb|AAM60951.1| unknown [Arabidopsis thaliana] gi|159025286|emb|CAL91513.1| SHW1 protein [Arabidopsis thaliana]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/90 (75%), Positives = 80/90 (88%)

Query: 96  VDLLIRFLQATFKKVSKRAKKASRSILPAAISPKLVSFAVDGILLLASLSILKALLEVVC 155
           VDLLIRFL++ FKKVSKRAKKASR ILPAA+SP+LVSFAVDGILLL SLSI +A LEV+C
Sbjct: 97  VDLLIRFLRSMFKKVSKRAKKASRRILPAAMSPRLVSFAVDGILLLGSLSITRAFLEVIC 156

Query: 156 SIGGTVFVLILLLRFIWAAISYFQSSGNSF 185
           ++GGTVF +ILL+R  WAA S+FQ+ GNSF
Sbjct: 157 NLGGTVFTVILLIRLFWAAASFFQTYGNSF 186

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409408|ref|NP_564981.1| short hypocotyl in white light1 protein [Arabidopsis thaliana] gi|332196879|gb|AEE35000.1| short hypocotyl in white light1 protein [Arabidopsis thaliana]

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/90 (74%), Positives = 79/90 (87%)

Query: 96  VDLLIRFLQATFKKVSKRAKKASRSILPAAISPKLVSFAVDGILLLASLSILKALLEVVC 155
           VDLLIRFL++ FKKVSKR KKASR ILPAA+SP+LVSFAVDGILLL SLSI +A LEV+C
Sbjct: 97  VDLLIRFLRSMFKKVSKRTKKASRRILPAAMSPRLVSFAVDGILLLGSLSITRAFLEVIC 156

Query: 156 SIGGTVFVLILLLRFIWAAISYFQSSGNSF 185
           ++GGTVF +ILL+R  WAA S+FQ+ GNSF
Sbjct: 157 NLGGTVFTVILLIRLFWAAASFFQTYGNSF 186

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:505006215	192	SHW1 "AT1G69935" [Arabidopsis	0.871	0.885	0.32	2.6e-15
TAIR|locus:2134268	203	AT4G33780 "AT4G33780" [Arabido	0.410	0.394	0.362	2.9e-09

TAIR|locus:505006215 SHW1 "AT1G69935" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 56/175 (32%), Positives = 83/175 (47%)

Query:     3 SAATLSPFIVINLSSAKLDHSSPSPTANLSFHHNRHTNHNKTLSELSICHAQLNYGSAGE 62
             S+++ SP + +  +S +    +P  ++N  F   R    N++L+  S  H++  Y S  +
Sbjct:     9 SSSSSSPSLTLINASHRFVSVTPF-SSNSIFLRRRFRRLNRSLASSS-SHSRRRYES--D 64

Query:    63 DPDEIGEAFFDEGVDGGAIMXXXXXXXXXXXXXXXLLIRFLQATFXXXXXXXXXXXXXIL 122
             D    G   +D   D                    LLIRFL++ F             IL
Sbjct:    65 DRFFGGGDNYDVVPDDDGF-SDDDDEEDERESSVDLLIRFLRSMFKKVSKRTKKASRRIL 123

Query:   123 PAAISPKLVSFAVDGXXXXXXXXXXXXXXEVVCSIGGTVFVLILLLRFIWAAISY 177
             PAA+SP+LVSFAVDG              EV+C++GGTVF +ILL+R  WAA S+
Sbjct:   124 PAAMSPRLVSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAASF 178

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0010100 "negative regulation of photomorphogenesis" evidence=IMP

TAIR|locus:2134268 AT4G33780 "AT4G33780" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 29/80 (36%), Positives = 41/80 (51%)

Query:    98 LLIRFLQATFXXXXXXXXXXXXXILPAAISPKLVSFAVDGXXXXXXXXXXXXXXEVVCSI 157
             LL+RF++  F             ILP +IS KLV F+V+G              EV C++
Sbjct:    98 LLLRFVENVFRKISKRARKAVRSILPVSISTKLVGFSVNGVLILAFLWILKAFLEVACTL 157

Query:   158 GGTVFVLILLLRFIWAAISY 177
             G  VF  ILL+R +WA ++Y
Sbjct:   158 GTIVFTSILLIRGLWAGVAY 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      195       138   0.00091  102 3  11 22  0.39    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  124 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.65u 0.17s 11.82t   Elapsed:  00:00:01
  Total cpu time:  11.65u 0.17s 11.82t   Elapsed:  00:00:01
  Start:  Fri May 10 15:33:27 2013   End:  Fri May 10 15:33:28 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VIII1698 hypothetical protein (203 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
PF14812	81	PBP1_TM: Transmembrane domain of transglycosylase	89.05

>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A

Probab=89.05  E-value=0.1  Score=39.58  Aligned_cols=22  Identities=27%  Similarity=0.179  Sum_probs=1.3

Q ss_pred             HHHHHHHHHHHHhhhhccCCccC
Q 029325          105 ATFKKVSKRAKKASRSILPAAIS  127 (195)
Q Consensus       105 s~fkKvSkRArKA~RsvLP~~is  127 (195)
                      .|=||..+| .+.-|..|=.-|.
T Consensus        52 ~m~rK~k~r-~rkKrrwlwLlik   73 (81)
T PF14812_consen   52 PMPRKGKKR-PRKKRRWLWLLIK   73 (81)
T ss_dssp             --------------------TTT
T ss_pred             ccccccccC-ccccchhHHHHHH
Confidence            577887776 5555555544444

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00