Citrus Sinensis ID: 029341

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
MALAAQFLLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYSTNDNCSSSSSSSSSSSRNYLELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVRSSVNLDAYSPPPKLLQILPPKSTIRSSEVGAQIGPNNPKFALGMQALLDLIFAVEGSVSEAAK
ccccHHHHHccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccEEccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHc
cHHHHHHHHHHHHHHHccccEccccEEEEEEEEEEEEccccccccEEcccEEEEEccccccccEEccHcHcEEEEEEEcccccccccccccEEEEEcccccEEEEEcccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccccccccccccccccccccHHHHHHHHHHHHHcccHHHHcc
MALAAQFLLRipqlrrkninfpsykhrgnyqplflscnystndncsssssssssssrnyleltddELFRECemdaykspgpggqhrnkresavrlkhvptgvIAQAAEDRSQHKNRASALSRLRTLLALKVRssvnldayspppkllqilppkstirssevgaqigpnnpkFALGMQALLDLIFAVEgsvseaak
MALAAQFllripqlrrKNINFPSYKHRGNYQPLFLSCNYSTNDNCSssssssssssrnYLELTDDELFRECEMDAykspgpggqhrnkRESAVRLKHVPTGVIaqaaedrsqhknRASALSRLRTLLALKVRSsvnldayspppkllqilpPKSTIRSSEVGAQIGPNNPKFALGMQALLDLIFAVEGSVSEAAK
MALAAQFLLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYSTNDNCsssssssssssRNYLELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNrasalsrlrtllalKVRSSVNLDAYSpppkllqilppkSTIRSSEVGAQIGPNNPKFALGMQALLDLIFAVEGSVSEAAK
****AQFLLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYS**********************************************************************************LRTLLALKVRSSVNL********************************PKFALGMQALLDLIFAVE********
*****Q*LLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYSTNDNCSSSSSSSSSSSRNYLELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQ*KNRASALSRLRTLLA*********************************GAQIGPNNPKFALGMQALLDLIFAVEGSVS****
MALAAQFLLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYST*******************ELTDDELFRECEMDAYK**************AVRLKHVPTGVIAQAA**********SALSRLRTLLALKVRSSVNLDAYSPPPKLLQILPPKSTIRSSEVGAQIGPNNPKFALGMQALLDLIFAVEGSVSEAAK
MALAAQFLLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYSTNDNCSSSSSSSSSSSRNYLELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVRSSVNLDAY***********************QIGPNNPKFALGMQALLDLIFAVEGS******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALAAQFLLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYSTNDNCSSSSSSSSSSSRNYLELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVRSSVNLDAYSPPPKLLQILPPKSTIRSSEVGAQIGPNNPKFALGMQALLDLIFAVEGSVSEAAK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query195 2.2.26 [Sep-21-2011]
A7ZE19366 Peptide chain release fac yes no 0.302 0.161 0.508 4e-14
Q30TP0365 Peptide chain release fac yes no 0.302 0.161 0.542 4e-14
A0RQM7369 Peptide chain release fac yes no 0.333 0.176 0.485 5e-14
Q89AC4366 Peptide chain release fac yes no 0.302 0.161 0.508 9e-14
A6Q582368 Peptide chain release fac yes no 0.302 0.160 0.491 2e-13
Q5WUB1362 Peptide chain release fac yes no 0.282 0.151 0.563 2e-13
Q5ZT29362 Peptide chain release fac yes no 0.282 0.151 0.563 2e-13
A5IED7362 Peptide chain release fac yes no 0.282 0.151 0.563 2e-13
Q5X2V3362 Peptide chain release fac yes no 0.282 0.151 0.563 2e-13
P55999363 Peptide chain release fac yes no 0.276 0.148 0.611 2e-13
>sp|A7ZE19|RF2_CAMC1 Peptide chain release factor 2 OS=Campylobacter concisus (strain 13826) GN=prfB PE=3 SV=1 Back     alignment and function desciption
 Score = 77.8 bits (190), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 45/59 (76%)

Query: 69  RECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLL 127
           ++ ++D Y++ G GGQH NK ESA+R+ H+PTG++ Q   DRSQHKNRA+A+  L++ L
Sbjct: 236 KDLKIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNRATAMKMLKSRL 294
Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
Campylobacter concisus (strain 13826) (taxid: 360104)
>sp|Q30TP0|RF2_SULDN Peptide chain release factor 2 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|A0RQM7|RF2_CAMFF Peptide chain release factor 2 OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q89AC4|RF2_BUCBP Peptide chain release factor 2 OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=prfB PE=3 SV=2 Back     alignment and function description
>sp|A6Q582|RF2_NITSB Peptide chain release factor 2 OS=Nitratiruptor sp. (strain SB155-2) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q5WUB1|RF1_LEGPL Peptide chain release factor 1 OS=Legionella pneumophila (strain Lens) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q5ZT29|RF1_LEGPH Peptide chain release factor 1 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|A5IED7|RF1_LEGPC Peptide chain release factor 1 OS=Legionella pneumophila (strain Corby) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q5X2V3|RF1_LEGPA Peptide chain release factor 1 OS=Legionella pneumophila (strain Paris) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|P55999|RF2_HELPY Peptide chain release factor 2 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=prfB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
356559945250 PREDICTED: uncharacterized protein LOC10 0.912 0.712 0.659 7e-62
224127830257 predicted protein [Populus trichocarpa] 0.758 0.575 0.722 2e-58
12322377255 peptide chain release factor, putative; 0.994 0.760 0.538 9e-56
30692851257 Class I peptide chain release factor [Ar 0.994 0.754 0.538 9e-56
326517198170 predicted protein [Hordeum vulgare subsp 0.687 0.788 0.776 2e-55
357126252239 PREDICTED: uncharacterized protein LOC10 0.707 0.577 0.746 3e-55
242059479259 hypothetical protein SORBIDRAFT_03g04217 0.753 0.567 0.693 2e-54
297851766256 hypothetical protein ARALYDRAFT_473511 [ 0.712 0.542 0.707 6e-54
414879327253 TPA: hypothetical protein ZEAMMB73_57118 0.707 0.545 0.724 1e-53
414879328220 TPA: hypothetical protein ZEAMMB73_57118 0.743 0.659 0.696 2e-53
>gi|356559945|ref|XP_003548256.1| PREDICTED: uncharacterized protein LOC100793467 [Glycine max] Back     alignment and taxonomy information
 Score =  242 bits (617), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 122/185 (65%), Positives = 146/185 (78%), Gaps = 7/185 (3%)

Query: 11  IPQLRRKNINFPSYKHRGNYQPLFLSCNYSTNDNCSSSSSSSSSSSRNYLELTDDELFRE 70
            P L    I+ P      NY  L+ S NY+T       S+    S + YL L+D+EL R+
Sbjct: 37  FPFLNTSPISLPPTTRITNYTHLWCS-NYTT------VSTIEEGSEKCYLNLSDEELMRQ 89

Query: 71  CEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLALK 130
           CEMD +K+ GPGGQHRNKRESAVRLKH+PTG+IAQA+EDRSQHKNRASA++RLR+L+ALK
Sbjct: 90  CEMDTFKASGPGGQHRNKRESAVRLKHLPTGIIAQASEDRSQHKNRASAINRLRSLIALK 149

Query: 131 VRSSVNLDAYSPPPKLLQILPPKSTIRSSEVGAQIGPNNPKFALGMQALLDLIFAVEGSV 190
           VR +V+L+AYSPP +LLQILPPKS+IR S+ G+QIGPNNPKFA GMQALLDLIFAVEGSV
Sbjct: 150 VRKTVDLEAYSPPRELLQILPPKSSIRGSDCGSQIGPNNPKFASGMQALLDLIFAVEGSV 209

Query: 191 SEAAK 195
           SEAAK
Sbjct: 210 SEAAK 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224127830|ref|XP_002329188.1| predicted protein [Populus trichocarpa] gi|222870969|gb|EEF08100.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|12322377|gb|AAG51209.1|AC051630_6 peptide chain release factor, putative; 8726-9996 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30692851|ref|NP_174601.2| Class I peptide chain release factor [Arabidopsis thaliana] gi|12322576|gb|AAG51290.1|AC027035_13 unknown protein [Arabidopsis thaliana] gi|26450075|dbj|BAC42157.1| putative peptide chain release factor [Arabidopsis thaliana] gi|29824307|gb|AAP04114.1| putative peptide chain release factor [Arabidopsis thaliana] gi|332193463|gb|AEE31584.1| Class I peptide chain release factor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|326517198|dbj|BAJ99965.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|357126252|ref|XP_003564802.1| PREDICTED: uncharacterized protein LOC100830192 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|242059479|ref|XP_002458885.1| hypothetical protein SORBIDRAFT_03g042170 [Sorghum bicolor] gi|241930860|gb|EES04005.1| hypothetical protein SORBIDRAFT_03g042170 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|297851766|ref|XP_002893764.1| hypothetical protein ARALYDRAFT_473511 [Arabidopsis lyrata subsp. lyrata] gi|297339606|gb|EFH70023.1| hypothetical protein ARALYDRAFT_473511 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|414879327|tpg|DAA56458.1| TPA: hypothetical protein ZEAMMB73_571187 [Zea mays] Back     alignment and taxonomy information
>gi|414879328|tpg|DAA56459.1| TPA: hypothetical protein ZEAMMB73_571187 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
TAIR|locus:2006897257 AT1G33330 [Arabidopsis thalian 0.702 0.533 0.528 2.8e-38
UNIPROTKB|Q74EJ1107 GSU0971 "Hydrolase, putative" 0.276 0.504 0.481 9.4e-11
TIGR_CMR|GSU_0971107 GSU_0971 "peptidyl-tRNA hydrol 0.276 0.504 0.481 9.4e-11
UNIPROTKB|P07012365 prfB [Escherichia coli K-12 (t 0.292 0.156 0.491 1.7e-10
TIGR_CMR|CJE_1628365 CJE_1628 "peptide chain releas 0.282 0.150 0.525 2.1e-10
TIGR_CMR|ECH_0705366 ECH_0705 "peptide chain releas 0.282 0.150 0.464 1.3e-09
TIGR_CMR|CPS_3552362 CPS_3552 "peptide chain releas 0.235 0.127 0.5 1.6e-09
TIGR_CMR|SO_3833363 SO_3833 "peptide chain release 0.235 0.126 0.478 2e-09
TIGR_CMR|CBU_1965361 CBU_1965 "peptide chain releas 0.235 0.127 0.478 4.3e-09
TIGR_CMR|APH_0479376 APH_0479 "peptide chain releas 0.251 0.130 0.489 4.7e-09
TAIR|locus:2006897 AT1G33330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 383 (139.9 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
 Identities = 73/138 (52%), Positives = 98/138 (71%)

Query:    58 NYLELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNXX 117
             NYL+ TD+EL ++C ++ ++  GPGGQHRNKR+SAVRLKH+PTG++AQA EDRSQHKN  
Sbjct:    85 NYLKFTDEELMKQCRLETFRVSGPGGQHRNKRDSAVRLKHLPTGIVAQAVEDRSQHKNRA 144

Query:   118 XXXXXXXXXXXXKVRSSVNLDAYSXXXXXXXXXXXXSTIRSSEVGAQIGPNNPKFALGMQ 177
                         KVR+ V+++AY+            STIR+S  G+QIGPNNPKF  GMQ
Sbjct:   145 SALNRLRTLLAIKVRNKVDIEAYAPPPELLQILPPKSTIRTSS-GSQIGPNNPKFVPGMQ 203

Query:   178 ALLDLIFAVEGSVSEAAK 195
             ALLD+I A +GS++++AK
Sbjct:   204 ALLDVISASDGSIADSAK 221
GO:0003747 "translation release factor activity" evidence=IEA;ISS
GO:0006415 "translational termination" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0006783 "heme biosynthetic process" evidence=RCA
UNIPROTKB|Q74EJ1 GSU0971 "Hydrolase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0971 GSU_0971 "peptidyl-tRNA hydrolase domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P07012 prfB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1628 CJE_1628 "peptide chain release factor 2" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0705 ECH_0705 "peptide chain release factor 2, programmed frameshift" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3552 CPS_3552 "peptide chain release factor 1" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3833 SO_3833 "peptide chain release factor 1" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1965 CBU_1965 "peptide chain release factor 1" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0479 APH_0479 "peptide chain release factor 2, programmed frameshift" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.01250059
hypothetical protein (257 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.0022006501
hypothetical protein (59 aa)
  •     0.486
gw1.II.491.1
annotation not avaliable (351 aa)
  •     0.439

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
pfam00472114 pfam00472, RF-1, RF-1 domain 3e-23
PRK00578367 PRK00578, prfB, peptide chain release factor 2; Va 8e-20
PRK00591359 PRK00591, prfA, peptide chain release factor 1; Va 1e-19
COG0216363 COG0216, PrfA, Protein chain release factor A [Tra 2e-18
PRK05589325 PRK05589, PRK05589, peptide chain release factor 2 9e-18
TIGR00020364 TIGR00020, prfB, peptide chain release factor 2 1e-17
PRK07342339 PRK07342, PRK07342, peptide chain release factor 2 2e-17
COG1186239 COG1186, PrfB, Protein chain release factor B [Tra 6e-17
TIGR00019360 TIGR00019, prfA, peptide chain release factor 1 7e-17
TIGR03072200 TIGR03072, release_prfH, putative peptide chain re 5e-13
PRK08787313 PRK08787, PRK08787, peptide chain release factor 2 7e-13
PRK08179200 PRK08179, prfH, peptide chain release factor-like 3e-12
PRK06746326 PRK06746, PRK06746, peptide chain release factor 2 1e-09
PRK09256138 PRK09256, PRK09256, hypothetical protein; Provisio 3e-06
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain Back     alignment and domain information 
 Score = 89.2 bits (222), Expect = 3e-23
 Identities = 32/59 (54%), Positives = 43/59 (72%)

Query: 70  ECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLA 128
           +  +D ++S GPGGQ+ NK ESAVRL H+PTG++ +  E+RSQHKNR  AL RL+  L 
Sbjct: 14  DLRIDTFRSSGPGGQNVNKTESAVRLTHLPTGIVVKCQEERSQHKNREKALERLKAKLY 72

This domain is found in peptide chain release factors such as RF-1 and RF-2, and a number of smaller proteins of unknown function. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis. Length = 114
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated Back     alignment and domain information
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated Back     alignment and domain information
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2 Back     alignment and domain information
>gnl|CDD|235997 PRK07342, PRK07342, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|224107 COG1186, PrfB, Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1 Back     alignment and domain information
>gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H Back     alignment and domain information
>gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 195
COG0216363 PrfA Protein chain release factor A [Translation, 100.0
TIGR03072200 release_prfH putative peptide chain release factor 100.0
PRK08179200 prfH peptide chain release factor-like protein; Re 100.0
PRK08787313 peptide chain release factor 2; Provisional 100.0
TIGR00019360 prfA peptide chain release factor 1. This model de 100.0
PRK05589325 peptide chain release factor 2; Provisional 100.0
PRK07342339 peptide chain release factor 2; Provisional 100.0
PRK06746326 peptide chain release factor 2; Provisional 100.0
PRK00591359 prfA peptide chain release factor 1; Validated 100.0
TIGR00020364 prfB peptide chain release factor 2. In many but n 100.0
KOG2726386 consensus Mitochondrial polypeptide chain release 100.0
PRK00578367 prfB peptide chain release factor 2; Validated 100.0
COG1186239 PrfB Protein chain release factor B [Translation, 100.0
PF00472113 RF-1: RF-1 domain; InterPro: IPR000352 Peptide cha 99.97
PRK09256138 hypothetical protein; Provisional 99.89
KOG3429172 consensus Predicted peptidyl-tRNA hydrolase [Trans 99.71
PF03462115 PCRF: PCRF domain; InterPro: IPR005139 This domain 98.54
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-50  Score=360.25  Aligned_cols=157  Identities=27%  Similarity=0.367  Sum_probs=136.8

Q ss_pred             hHHHHHHhHHHHHHcCCeeeeeeccCCCCCCeeEEEEeecCCCCcc-----ccCC--------------CCCCCC-----
Q 029341            3 LAAQFLLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYSTNDNCSSS-----SSSS--------------SSSSRN-----   58 (195)
Q Consensus         3 ~~~~f~~~~~~a~r~~~~~~~v~~~~~~~~g~~S~~~~~~g~~~~~-----~g~~--------------~~~~~~-----   58 (195)
                      .+|||+||.++|+.+||++++++.+.++.||||.++++|+|.++|+     +|.|              |..-..     
T Consensus       131 agDLfrMY~rYAe~kgWk~ei~s~se~~~GG~kEii~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlP  210 (363)
T COG0216         131 AGDLFRMYSRYAESKGWKVEILSASESELGGYKEIIASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLP  210 (363)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeecCcccCCCceEEEEEEeccchhhhhhhccCccceeccccccCCCceeecceeEEecc
Confidence            5799999999999999999999999999999999999999999875     5655              332221     


Q ss_pred             ------ccccChhhhhccceeeeeecCCCCCCCCCccCceEEEEEcccccEEEEcccCCHHHHHHHHHHHHHHHHHHHHh
Q 029341           59 ------YLELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVR  132 (195)
Q Consensus        59 ------~~~i~~~dL~~~~~i~~~RssGpGGQ~VNk~~taVrl~h~PtGi~v~~~~~RSq~~Nk~~Al~rL~~~l~~~~~  132 (195)
                            -+.|++.||    +|++|||||+||||||+|+||||||||||||+|+||++||||+||++||+.|+++|....+
T Consensus       211 E~ee~~ei~I~~~Dl----rIDt~RsSGaGGQhVNtTdSAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~  286 (363)
T COG0216         211 EVEEVEEIEINPKDL----RIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAER  286 (363)
T ss_pred             CCCcccccccChHHc----eeeeeecCCCCCCCcCccchhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHH
Confidence                  355555555    9999999999999999999999999999999999999999999999999999998876555


Q ss_pred             hhcccCCCCCCccccccCCCCCccccCcccCccCCCCCChhH
Q 029341          133 SSVNLDAYSPPPKLLQILPPKSTIRSSEVGAQIGPNNPKFAL  174 (195)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~rksq~r~~~r~ekIrtyn~~fp~  174 (195)
                      ++.+.+         ....||+|+++|||||+|||||  ||+
T Consensus       287 ~~~~~~---------~~~~RksqVGSGDRSErIRTYN--fPQ  317 (363)
T COG0216         287 QKAQAE---------EASERKSQVGSGDRSERIRTYN--FPQ  317 (363)
T ss_pred             HHHHHH---------HHHHHHHhcCCCchhhhhhccC--CCC
Confidence            444332         2568999999999999999999  887

>TIGR03072 release_prfH putative peptide chain release factor H Back     alignment and domain information
>PRK08179 prfH peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>PRK08787 peptide chain release factor 2; Provisional Back     alignment and domain information
>TIGR00019 prfA peptide chain release factor 1 Back     alignment and domain information
>PRK05589 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK07342 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK06746 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK00591 prfA peptide chain release factor 1; Validated Back     alignment and domain information
>TIGR00020 prfB peptide chain release factor 2 Back     alignment and domain information
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00578 prfB peptide chain release factor 2; Validated Back     alignment and domain information
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis [] Back     alignment and domain information
>PRK09256 hypothetical protein; Provisional Back     alignment and domain information
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
1ml5_Z365 Structure Of The E. Coli Ribosomal Termination Comp 2e-11
1mi6_A365 Docking Of The Modified Rf2 X-Ray Structure Into Th 3e-11
1gqe_A365 Polypeptide Chain Release Factor 2 (Rf2) From Esche 3e-11
2b3t_B360 Molecular Basis For Bacterial Class 1 Release Facto 6e-09
2fvo_A333 Docking Of The Modified Rf1 X-ray Structure Into Th 4e-07
1rq0_A342 Crystal Structure Of Peptide Releasing Factor 1 Len 4e-07
2b64_Y354 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 2e-06
3f1e_X378 Crystal Structure Of A Translation Termination Comp 8e-06
2x9r_Y351 Structure Of The 70s Ribosome Bound To Release Fact 9e-06
2wh1_Y351 Insights Into Translational Termination From The St 9e-06
2ihr_1365 Rf2 Of Thermus Thermophilus Length = 365 9e-06
2b9m_Y365 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 1e-05
1zbt_A371 Crystal Structure Of Peptide Chain Release Factor 1 1e-05
2rsm_A115 Solution Structure And Sirna-Mediated Knockdown Ana 2e-04
>pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 365 Back     alignment and structure 
Iteration: 1

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 73  MDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKN 115
           +D Y++ G GGQH N+ ESAVR+ H+PTG++ Q   DRSQHKN
Sbjct: 241 IDVYRTSGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKN 283
>pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome Length = 365 Back     alignment and structure
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia Coli Length = 365 Back     alignment and structure
>pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 360 Back     alignment and structure
>pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-ray Structure Into The Low Resolution Cryo-em Map Of E.coli 70s Ribosome Bound With Rf1 Length = 333 Back     alignment and structure
>pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1 Length = 342 Back     alignment and structure
>pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. Length = 354 Back     alignment and structure
>pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 378 Back     alignment and structure
>pdb|2X9R|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release Length = 351 Back     alignment and structure
>pdb|2WH1|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome Length = 351 Back     alignment and structure
>pdb|2IHR|1 Chain 1, Rf2 Of Thermus Thermophilus Length = 365 Back     alignment and structure
>pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400 Length = 365 Back     alignment and structure
>pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (rf-1) (smu.1085) From Streptococcus Mutans At 2.34 A Resolution Length = 371 Back     alignment and structure
>pdb|2RSM|A Chain A, Solution Structure And Sirna-Mediated Knockdown Analysis Of The Mitochondrial Disease-Related Protein C12orf65 (Ict2) Length = 115 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 5e-22
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 9e-21
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 3e-20
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 3e-20
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 5e-20
2b3t_B360 RF-1, peptide chain release factor 1; translation 6e-20
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 1e-19
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 6e-13
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 1e-12
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 4e-10
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Length = 115 Back     alignment and structure
 Score = 85.5 bits (212), Expect = 5e-22
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 60  LELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASA 119
           L L + EL    E    K  GPGGQ  NK  + V LKHVP+G++ +  + RS  +NR  A
Sbjct: 41  LPLNESEL----EEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIA 96

Query: 120 LSRLRTLL 127
              L+  +
Sbjct: 97  RKVLQEKV 104
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365 Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365 Back     alignment and structure
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371 Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354 Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Length = 108 Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Length = 140 Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Length = 112 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 100.0
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 100.0
2b3t_B360 RF-1, peptide chain release factor 1; translation 100.0
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 100.0
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 100.0
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 100.0
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 99.96
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 99.94
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 99.94
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 99.91
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Back     alignment and structure
Probab=100.00  E-value=1.2e-44  Score=327.91  Aligned_cols=158  Identities=22%  Similarity=0.273  Sum_probs=121.3

Q ss_pred             hhHHHHHHhHHHHHHcCCeeeeeeccCCCCCCeeEEEEeecCCCCcc-----ccCC-----------CCCCCCc------
Q 029341            2 ALAAQFLLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYSTNDNCSSS-----SSSS-----------SSSSRNY------   59 (195)
Q Consensus         2 ~~~~~f~~~~~~a~r~~~~~~~v~~~~~~~~g~~S~~~~~~g~~~~~-----~g~~-----------~~~~~~~------   59 (195)
                      .+++||+||.+||+++||++++++..+++.+|||||++.|+|+++|.     +|.|           +++.+.|      
T Consensus       141 fa~~L~rMY~r~Ae~~g~kvevl~~~~~~~gG~ksv~~~I~G~~ayg~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~V~  220 (371)
T 1zbt_A          141 FAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVM  220 (371)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEEEEEECSSSCEEEEEEEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEEEEEEECccHHHHHhhccCeEEEEeecCCCCCCcccccceEEEEe
Confidence            36899999999999999999999999999999999999999998765     4544           1222222      


Q ss_pred             -------cccChhhhhccceeeeeecCCCCCCCCCccCceEEEEEcccccEEEEcccCCHHHHHHHHHHHHHHHHHHHHh
Q 029341           60 -------LELTDDELFRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVR  132 (195)
Q Consensus        60 -------~~i~~~dL~~~~~i~~~RssGpGGQ~VNk~~taVrl~h~PtGi~v~~~~~RSq~~Nk~~Al~rL~~~l~~~~~  132 (195)
                             +.|++    +||+|+|+|||||||||||||+|+|||+|+||||+|+|+++|||++||+.|+++|+++|.....
T Consensus       221 Pe~~ev~i~I~~----~dl~i~~~RssGpGGQ~VNkt~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~  296 (371)
T 1zbt_A          221 PEVEEVEYEIDP----KDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFA  296 (371)
T ss_dssp             ECCCGGGSCCCG----GGEEEEEECC---------CCCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccCc----CcEEEEEecCCCCCCCcccccceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence                   23333    4569999999999999999999999999999999999999999999999999999999876655


Q ss_pred             hhcccCCCCCCccccccCCCCCccccCcccCccCCCCCChhH
Q 029341          133 SSVNLDAYSPPPKLLQILPPKSTIRSSEVGAQIGPNNPKFAL  174 (195)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~rksq~r~~~r~ekIrtyn~~fp~  174 (195)
                      ++.+.+         ....|++++++|+||++|||||  ||+
T Consensus       297 ~~~~~~---------~~~~r~~~ig~g~Rse~IRtYn--f~q  327 (371)
T 1zbt_A          297 QIAQDE---------QDAERKSTVGTGDRSERIRTYN--FPQ  327 (371)
T ss_dssp             HHHHHH---------TCC----CCSCSCTTSEEEEEE--TTT
T ss_pred             HHHHHH---------HHHHHHhhccccccCCCeeeEE--CCC
Confidence            554432         1346899999999999999999  566
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Back     alignment and structure
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 195
d1j26a_112 d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [ 5e-12
d1gqea_362 e.38.1.1 (A:) Polypeptide chain release factor 2 ( 6e-08
d1rq0a_333 e.38.1.1 (A:) Peptide chain release factor 1, RF1 3e-07
d2b3tb1344 e.38.1.1 (B:7-354) Peptide chain release factor 1, 1e-06
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: Peptidyl-tRNA hydrolase domain-like
family: Peptidyl-tRNA hydrolase domain
domain: Ict1 protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.0 bits (140), Expect = 5e-12
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 26/103 (25%)

Query: 52  SSSSSRNYLELTDDEL-FRECEMDAYKSPGPGGQHRNKRESAVRLKH------------- 97
           SS SS  + +     +      +   +S GPGGQ+ NK  S   ++              
Sbjct: 2   SSGSSGEHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVR 61

Query: 98  ------------VPTGVIAQAAEDRSQHKNRASALSRLRTLLA 128
                           ++  +   R Q +N A  L ++R ++A
Sbjct: 62  QKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIA 104
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362 Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Length = 333 Back     information, alignment and structure
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
d1rq0a_333 Peptide chain release factor 1, RF1 {Thermotoga ma 100.0
d2b3tb1344 Peptide chain release factor 1, RF1 {Escherichia c 100.0
d1gqea_362 Polypeptide chain release factor 2 (RF2) {Escheric 100.0
d1j26a_112 Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} 99.87
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Peptide chain release factor 1, RF1
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.5e-47  Score=339.42  Aligned_cols=161  Identities=22%  Similarity=0.291  Sum_probs=123.7

Q ss_pred             hHHHHHHhHHHHHHcCCeeeeeeccCCCCCCeeEEEEeecCCCCcc-----ccCC-----------CCCCCCccccC---
Q 029341            3 LAAQFLLRIPQLRRKNINFPSYKHRGNYQPLFLSCNYSTNDNCSSS-----SSSS-----------SSSSRNYLELT---   63 (195)
Q Consensus         3 ~~~~f~~~~~~a~r~~~~~~~v~~~~~~~~g~~S~~~~~~g~~~~~-----~g~~-----------~~~~~~~~~i~---   63 (195)
                      .++||+||.+||+++||++++++..+++.+||++|+++|+|+++|.     .|.|           +++.++++.+.   
T Consensus       105 A~~L~RMY~r~Ae~kgwk~eil~~~~~e~gGiK~v~~~I~G~~ayg~Lk~E~GvHRv~Rvp~~~~~~r~hTs~~~V~v~p  184 (333)
T d1rq0a_         105 ARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLP  184 (333)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTHHHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhhccccccccccccccccccchhheeeccccchhhhcccccceeEEEecccCCCCceEEEEEEEEEec
Confidence            5789999999999999999999999999999999999999999865     4544           45566654431   


Q ss_pred             ---hhhh---hccceeeeeecCCCCCCCCCccCceEEEEEcccccEEEEcccCCHHHHHHHHHHHHHHHHHHHHhhhccc
Q 029341           64 ---DDEL---FRECEMDAYKSPGPGGQHRNKRESAVRLKHVPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVRSSVNL  137 (195)
Q Consensus        64 ---~~dL---~~~~~i~~~RssGpGGQ~VNk~~taVrl~h~PtGi~v~~~~~RSq~~Nk~~Al~rL~~~l~~~~~~~~~~  137 (195)
                         +.++   ++|++|+|+|||||||||||||+|||||||+||||+|+||++|||++||+.||++|+++|.....++.+.
T Consensus       185 ~~~~~~v~i~~~dl~i~~~RssG~GGQ~VNkt~sAVRitH~PTGi~v~~q~eRSQ~~Nk~~A~~~L~~kl~~~~~~~~~~  264 (333)
T d1rq0a_         185 EIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKER  264 (333)
T ss_dssp             CCCGGGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccceeEEeecCCccccchhhhhhheeEEEEcCCccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               1222   4567999999999999999999999999999999999999999999999999999999887655544443


Q ss_pred             CCCCCCccccccCCCCCccccCcccCccCCCCCChhH
Q 029341          138 DAYSPPPKLLQILPPKSTIRSSEVGAQIGPNNPKFAL  174 (195)
Q Consensus       138 ~~~~~~~~~~~~~~rksq~r~~~r~ekIrtyn~~fp~  174 (195)
                      +         ....||+|+++++||+||||||  ||.
T Consensus       265 ~---------~~~~r~~~~~~~~r~~~iRtY~--~p~  290 (333)
T d1rq0a_         265 E---------ISQKRKSQIGTGERSEKIRTYN--FPQ  290 (333)
T ss_dssp             T---------TCC----------CCCEEEEEE--TTT
T ss_pred             H---------HHHHHhccccccccCCCceeee--CCC
Confidence            3         1457999999999999999999  576
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure