Citrus Sinensis ID: 029345

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MFHAPALRSWISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVIA
Secondary Structure (PSIPRED)
ccccccHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccccccHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccEccHHHEEEEEEc
Coil and Loop (DISEMBL)
mfhapalrswisssrspiimaskskthrlhqlsGTALqsiakrprtittesYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKElqgtdfwklrrayspgVQEYVEAATFCKFCRTGTLLDLeelnagllplsdpaieplqiNVFDYLLGVIA
Flexible Loop (DISEMBL)
mfhapalrswisssrspIIMASkskthrlhqlsgtalqsiakrprtittesyMKDAFANYAGYLNELNEKRErvvkssrditinskkvifqvhrisrdnkeevLKKAEADLEAVKDQYISRLvkelqgtdfwkLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPlsdpaieplqINVFDYLLGVIA
Low Complexity Region (SEG)
MFHAPALrswisssrspiiMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTlldleelnagllplSDPAIEPLQINVFDYLLGVIA
Disordered region (IsUnstruct)
*********************************************TITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR*****VLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI*
Disordered Region (DISOPRED)
*******************************************************AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVIA
Disordered Region (DISEMBL)
MFHAPALRSWISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVIA
Disordered Region (DISPRO)
**************************************************SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVIA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFHAPALRSWISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISxxxxxxxxxxxxxxxxxxxxxYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVIA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q9JHB5	290	Translin-associated prote	yes	no	0.701	0.468	0.380	9e-20
Q4R599	290	Translin-associated prote	N/A	no	0.701	0.468	0.380	3e-19
Q9QZE7	290	Translin-associated prote	yes	no	0.701	0.468	0.380	4e-19
Q5RC21	290	Translin-associated prote	yes	no	0.701	0.468	0.374	9e-19
Q99598	290	Translin-associated prote	yes	no	0.701	0.468	0.374	9e-19
O74955	231	Translin-associated prote	yes	no	0.623	0.523	0.34	5e-13

>sp|Q9JHB5|TSNAX_RAT Translin-associated protein X OS=Rattus norvegicus GN=Tsnax PE=1 SV=1

 Score = 96.7 bits (239), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 91/155 (58%), Gaps = 19/155 (12%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + EE+L ++E+ L+ V
Sbjct: 38  AFKSFQQELDTRHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESESKLDGV 97

Query: 115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLS 174
           + Q + ++ +EL G D  +  RA + G+QEYVEA +F  F RT +L+ +EE+N  L   +
Sbjct: 98  R-QKMLQVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIRTRSLISMEEINRQLTFTT 156

Query: 175 DPAIEP-----------------LQINVFDYLLGV 192
           D + +                  L+I   DYLLGV
Sbjct: 157 DDSGKESKAPPADGQDKQLVTWRLKITPVDYLLGV 191

Possible role in spermatogenesis.
Rattus norvegicus (taxid: 10116)

>sp|Q4R599|TSNAX_MACFA Translin-associated protein X OS=Macaca fascicularis GN=TSNAX PE=2 SV=1

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 91/155 (58%), Gaps = 19/155 (12%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + E++L ++E  L+ V
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97

Query: 115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLL--- 171
           + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +L+ ++E+N  L+   
Sbjct: 98  R-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTT 156

Query: 172 ---------PLSDPAIEP-----LQINVFDYLLGV 192
                    P SD   E      L++   DYLLGV
Sbjct: 157 DDNGKENKTPSSDTQDEQFGTWRLRVTPVDYLLGV 191

Possible role in spermatogenesis.

Macaca fascicularis (taxid: 9541)

>sp|Q9QZE7|TSNAX_MOUSE Translin-associated protein X OS=Mus musculus GN=Tsnax PE=1 SV=1

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 91/155 (58%), Gaps = 19/155 (12%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + EE+L ++E+ L+ V
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESESKLDGV 97

Query: 115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLS 174
           + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +L+ +EE+N  L   +
Sbjct: 98  R-QKILQVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIKTRSLISMEEINKQLTFTA 156

Query: 175 D--------PAIEP---------LQINVFDYLLGV 192
           +        P  E          L++   DYLLGV
Sbjct: 157 EDSGKESKTPPAEGQEKQLVTWRLKLTPVDYLLGV 191

Possible role in spermatogenesis.

Mus musculus (taxid: 10090)

>sp|Q5RC21|TSNAX_PONAB Translin-associated protein X OS=Pongo abelii GN=TSNAX PE=2 SV=1

 Score = 93.2 bits (230), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 91/155 (58%), Gaps = 19/155 (12%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + E++L ++E  L+ V
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97

Query: 115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLL--- 171
           + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +L+ ++E+N  L+   
Sbjct: 98  R-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTT 156

Query: 172 ---------PLSDPAIEP-----LQINVFDYLLGV 192
                    P SD   +      L++   DYLLGV
Sbjct: 157 EDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGV 191

Possible role in spermatogenesis.

Pongo abelii (taxid: 9601)

>sp|Q99598|TSNAX_HUMAN Translin-associated protein X OS=Homo sapiens GN=TSNAX PE=1 SV=1

 Score = 93.2 bits (230), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 91/155 (58%), Gaps = 19/155 (12%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + E++L ++E  L+ V
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97

Query: 115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLL--- 171
           + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +L+ ++E+N  L+   
Sbjct: 98  R-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTT 156

Query: 172 ---------PLSDPAIEP-----LQINVFDYLLGV 192
                    P SD   +      L++   DYLLGV
Sbjct: 157 EDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGV 191

Possible role in spermatogenesis.

Homo sapiens (taxid: 9606)

>sp|O74955|TSNAX_SCHPO Translin-associated protein X homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC736.09c PE=3 SV=1

 Score = 74.3 bits (181), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 29/150 (19%)

Query: 53  MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR----------DNKEE 102
           M++ F ++  +L E  +KRE++++ SR+ITI SK++IF +H+ S           D    
Sbjct: 1   MEEEFLSFKNFLQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFDRTSI 60

Query: 103 VLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLD 162
             KK   +LE++K        +EL G +  K   A + G+QEYVEA TF  + +TGTLL 
Sbjct: 61  FEKKIHKELESLK--------RELAGLNADKFSSACTHGLQEYVEAVTFKFWLQTGTLLS 112

Query: 163 LEELNAGLLPLSDPAIEPLQINVFDYLLGV 192
            +          D +   + IN  DY+LGV
Sbjct: 113 CK----------DSSFR-ISINFIDYVLGV 131

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
359386148	270	translin-associated factor X [Citrus sin	0.891	0.640	0.976	3e-95
255541928	257	translin associated factor X, putative [	0.902	0.680	0.758	2e-73
224108631	307	predicted protein [Populus trichocarpa]	0.891	0.563	0.727	5e-70
449452825	284	PREDICTED: translin-associated protein X	0.896	0.612	0.741	6e-70
297818030	287	translin family protein [Arabidopsis lyr	0.902	0.609	0.685	8e-69
30678076	287	translin-like protein [Arabidopsis thali	0.902	0.609	0.691	9e-69
357516891	315	Translin-associated protein X [Medicago	0.953	0.587	0.651	2e-68
297738200	270	unnamed protein product [Vitis vinifera]	0.865	0.622	0.738	9e-68
225424991	282	PREDICTED: translin-associated protein X	0.865	0.595	0.738	1e-67
4406769	299	unknown protein [Arabidopsis thaliana]	0.902	0.585	0.647	4e-66

>gi|359386148|gb|AEV43363.1| translin-associated factor X [Citrus sinensis]

 Score =  352 bits (904), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 169/173 (97%), Positives = 171/173 (98%)

Query: 20  MASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSR 79
           MASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVK+SR
Sbjct: 1   MASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKASR 60

Query: 80  DITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYS 139
           DITINSKKVIFQVHRISRDNKEEVLKKAEADL AVKDQYISRLVKELQGTDFWKLRRAYS
Sbjct: 61  DITINSKKVIFQVHRISRDNKEEVLKKAEADLVAVKDQYISRLVKELQGTDFWKLRRAYS 120

Query: 140 PGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGV 192
           PGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINV DYLLG+
Sbjct: 121 PGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVLDYLLGL 173

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541928|ref|XP_002512028.1| translin associated factor X, putative [Ricinus communis] gi|223549208|gb|EEF50697.1| translin associated factor X, putative [Ricinus communis]

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/178 (75%), Positives = 156/178 (87%), Gaps = 3/178 (1%)

Query: 18  IIMASKSKTHRLHQ---LSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERV 74
           ++MASKSK HR H     +GTALQS  KR RT++TES  KDAF+ YA YLN LNEKRERV
Sbjct: 12  VLMASKSKPHRPHHQEVAAGTALQSSTKRARTMSTESSFKDAFSKYADYLNNLNEKRERV 71

Query: 75  VKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKL 134
           VK+SRD+T+NSKKVIFQVHR+S+ NKEEVL+KAE DL AV DQ++SRLVKELQGTDFWKL
Sbjct: 72  VKASRDVTMNSKKVIFQVHRLSKYNKEEVLEKAEKDLAAVTDQHMSRLVKELQGTDFWKL 131

Query: 135 RRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGV 192
           RRAYSPGVQEYVEAATF KFCRTGTLL+L+E+NA LLPLSDP++EPLQ+NV DYLLG+
Sbjct: 132 RRAYSPGVQEYVEAATFFKFCRTGTLLNLDEINATLLPLSDPSLEPLQLNVLDYLLGL 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108631|ref|XP_002314915.1| predicted protein [Populus trichocarpa] gi|222863955|gb|EEF01086.1| predicted protein [Populus trichocarpa]

 Score =  269 bits (687), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 152/180 (84%), Gaps = 7/180 (3%)

Query: 20  MASKSKTHRLHQLSGTALQSIAKRPRTITTESY-------MKDAFANYAGYLNELNEKRE 72
           +A+K K H LHQ +   LQS AKR RT+++ S         KDAF NYA YLN+LNEKRE
Sbjct: 17  VANKPKPHLLHQGTAAGLQSSAKRARTMSSTSESSSSSSSFKDAFGNYANYLNKLNEKRE 76

Query: 73  RVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFW 132
           RVVK+SRDIT+NSKKVIFQVHRIS+DN++EVL KAE DL AV +QYI +LVKELQGTDFW
Sbjct: 77  RVVKASRDITMNSKKVIFQVHRISKDNRDEVLDKAEKDLAAVTEQYILKLVKELQGTDFW 136

Query: 133 KLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGV 192
           KLRRAYSPGVQEYVEAATFCKFCRTGTLL+L+E+NA LLPLS+P++EPLQINV DYLLG+
Sbjct: 137 KLRRAYSPGVQEYVEAATFCKFCRTGTLLNLDEINATLLPLSEPSVEPLQINVLDYLLGL 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452825|ref|XP_004144159.1| PREDICTED: translin-associated protein X-like [Cucumis sativus] gi|449523668|ref|XP_004168845.1| PREDICTED: translin-associated protein X-like [Cucumis sativus]

 Score =  268 bits (686), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 129/174 (74%), Positives = 149/174 (85%)

Query: 19  IMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSS 78
           +MASK K   LH ++ TA+QS  KR R ++T+S MKDAFA YA YLN LN+KRERVVK+S
Sbjct: 12  LMASKPKPQLLHTIAETAVQSSVKRARILSTQSSMKDAFAKYAEYLNNLNDKRERVVKAS 71

Query: 79  RDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAY 138
           RDIT+NSKKVIFQVHRIS+ NKEEVL+KAE DL  V   +ISRLVKELQGTDFWKLRRAY
Sbjct: 72  RDITMNSKKVIFQVHRISKQNKEEVLEKAEKDLGHVATWHISRLVKELQGTDFWKLRRAY 131

Query: 139 SPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGV 192
           SPGVQEYVEAAT CKFC+TGTLL L+E+NAGLLPLSDP++EPLQI+  DYLLG+
Sbjct: 132 SPGVQEYVEAATLCKFCKTGTLLSLDEINAGLLPLSDPSLEPLQISNLDYLLGL 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818030|ref|XP_002876898.1| translin family protein [Arabidopsis lyrata subsp. lyrata] gi|297322736|gb|EFH53157.1| translin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  265 bits (676), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 120/175 (68%), Positives = 151/175 (86%)

Query: 18  IIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKS 77
           ++MA K K  RLHQ++ T ++ + K+ RT++TES MKDAF+ YA YLN  NEKRERVVK+
Sbjct: 15  MLMAPKLKPQRLHQIAETGVEQLVKKARTMSTESSMKDAFSTYADYLNNFNEKRERVVKA 74

Query: 78  SRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRA 137
           SRDIT+NSKKVIFQVHR+S+DNKEEVL+KA  DLEAV+DQ+ ++L++ELQGTDFWKLRRA
Sbjct: 75  SRDITMNSKKVIFQVHRLSKDNKEEVLEKAGKDLEAVRDQHFAQLMRELQGTDFWKLRRA 134

Query: 138 YSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGV 192
           YSPGVQEYVEAATF KFC +GTL  L+E+N  L+PLSDP++EPLQIN+ DY+LG+
Sbjct: 135 YSPGVQEYVEAATFYKFCLSGTLCTLDEINTTLVPLSDPSLEPLQINILDYILGL 189

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30678076|ref|NP_178473.2| translin-like protein [Arabidopsis thaliana] gi|26449445|dbj|BAC41849.1| unknown protein [Arabidopsis thaliana] gi|87116652|gb|ABD19690.1| At2g03780 [Arabidopsis thaliana] gi|330250654|gb|AEC05748.1| translin-like protein [Arabidopsis thaliana]

 Score =  265 bits (676), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 121/175 (69%), Positives = 150/175 (85%)

Query: 18  IIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKS 77
           ++MA K K  RLHQ++ + ++ + K+ RT++TES MKDAF+ YA YLN  NEKRERVVK 
Sbjct: 15  MLMAPKLKPQRLHQIAESGVEHLVKKARTMSTESSMKDAFSTYADYLNNFNEKRERVVKV 74

Query: 78  SRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRA 137
           SRDIT+NSKKVIFQVHR+S+DNKEEVL+KA  DLEAV+DQ+ +RL+KELQGTDFWKLRRA
Sbjct: 75  SRDITMNSKKVIFQVHRLSKDNKEEVLEKAGKDLEAVRDQHFARLMKELQGTDFWKLRRA 134

Query: 138 YSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGV 192
           YSPGVQEYVEAATF KFC +GTL  L+E+N  L+PLSDP++EPLQIN+ DY+LG+
Sbjct: 135 YSPGVQEYVEAATFYKFCLSGTLCTLDEINTTLVPLSDPSLEPLQINILDYILGL 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516891|ref|XP_003628734.1| Translin-associated protein X [Medicago truncatula] gi|355522756|gb|AET03210.1| Translin-associated protein X [Medicago truncatula]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 127/195 (65%), Positives = 159/195 (81%), Gaps = 10/195 (5%)

Query: 7   LRSWISS-SRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTIT--------TESYMKDAF 57
           LRS+ SS  R  + MAS+ KT RLHQ++GT  Q+ +KRP+T++        T+S MK+ F
Sbjct: 2   LRSFSSSFHRLSLFMASE-KTQRLHQITGTNFQNTSKRPKTMSIATDTATVTDSAMKEPF 60

Query: 58  ANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQ 117
             Y  YLN LN+KRERVVK+SRDIT+NSKKVIFQVHR+S+ NK+EVL+KAE DL AV +Q
Sbjct: 61  TKYTEYLNNLNDKRERVVKASRDITMNSKKVIFQVHRMSKYNKDEVLEKAEKDLAAVTNQ 120

Query: 118 YISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPA 177
           ++SRLVKELQGTDFWKLRRAYSPG+QEYVEAATFC FC+ GTLL L+E+N  LLPLSDP+
Sbjct: 121 HVSRLVKELQGTDFWKLRRAYSPGIQEYVEAATFCSFCKNGTLLKLDEINKTLLPLSDPS 180

Query: 178 IEPLQINVFDYLLGV 192
           ++PLQIN+ DY+LG+
Sbjct: 181 LQPLQINILDYILGL 195

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738200|emb|CBI27401.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (667), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 143/168 (85%)

Query: 25  KTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITIN 84
           K HR  Q++ T LQS  KR RT+ TES +KDAFANY  YLN LNEKRERVVK+SRDITIN
Sbjct: 4   KPHRFPQVADTVLQSPPKRARTMATESSIKDAFANYTDYLNLLNEKRERVVKASRDITIN 63

Query: 85  SKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQE 144
           SKKVIFQVHRIS++NK+EVL KA  DL +V +Q++SRLVKELQGTDFWKLRRAYSPGVQE
Sbjct: 64  SKKVIFQVHRISKNNKDEVLDKAVKDLASVTEQHVSRLVKELQGTDFWKLRRAYSPGVQE 123

Query: 145 YVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGV 192
           YVEAAT C FC+ GTLL L+E+NA LLPLSDP+ +PLQIN+ DYLLG+
Sbjct: 124 YVEAATLCNFCKNGTLLILDEINATLLPLSDPSHQPLQINILDYLLGL 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424991|ref|XP_002266684.1| PREDICTED: translin-associated protein X-like isoform 1 [Vitis vinifera]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 143/168 (85%)

Query: 25  KTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITIN 84
           K HR  Q++ T LQS  KR RT+ TES +KDAFANY  YLN LNEKRERVVK+SRDITIN
Sbjct: 16  KPHRFPQVADTVLQSPPKRARTMATESSIKDAFANYTDYLNLLNEKRERVVKASRDITIN 75

Query: 85  SKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQE 144
           SKKVIFQVHRIS++NK+EVL KA  DL +V +Q++SRLVKELQGTDFWKLRRAYSPGVQE
Sbjct: 76  SKKVIFQVHRISKNNKDEVLDKAVKDLASVTEQHVSRLVKELQGTDFWKLRRAYSPGVQE 135

Query: 145 YVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGV 192
           YVEAAT C FC+ GTLL L+E+NA LLPLSDP+ +PLQIN+ DYLLG+
Sbjct: 136 YVEAATLCNFCKNGTLLILDEINATLLPLSDPSHQPLQINILDYLLGL 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4406769|gb|AAD20080.1| unknown protein [Arabidopsis thaliana]

 Score =  256 bits (653), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 121/187 (64%), Positives = 150/187 (80%), Gaps = 12/187 (6%)

Query: 18  IIMASKSKTHRLHQL------------SGTALQSIAKRPRTITTESYMKDAFANYAGYLN 65
           ++MA K K  RLHQ+            + + ++ + K+ RT++TES MKDAF+ YA YLN
Sbjct: 15  MLMAPKLKPQRLHQMLISNDGFGVCVVAESGVEHLVKKARTMSTESSMKDAFSTYADYLN 74

Query: 66  ELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKE 125
             NEKRERVVK SRDIT+NSKKVIFQVHR+S+DNKEEVL+KA  DLEAV+DQ+ +RL+KE
Sbjct: 75  NFNEKRERVVKVSRDITMNSKKVIFQVHRLSKDNKEEVLEKAGKDLEAVRDQHFARLMKE 134

Query: 126 LQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINV 185
           LQGTDFWKLRRAYSPGVQEYVEAATF KFC +GTL  L+E+N  L+PLSDP++EPLQIN+
Sbjct: 135 LQGTDFWKLRRAYSPGVQEYVEAATFYKFCLSGTLCTLDEINTTLVPLSDPSLEPLQINI 194

Query: 186 FDYLLGV 192
            DY+LG+
Sbjct: 195 LDYILGL 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2044264	287	AT2G03780 "AT2G03780" [Arabido	0.891	0.602	0.658	1.1e-57
DICTYBASE|DDB_G0284837	284	tsnax "translin-associated pro	0.752	0.514	0.324	4e-19
UNIPROTKB|J9P139	290	TSNAX "Uncharacterized protein	0.577	0.386	0.403	6.4e-19
RGD|621574	290	Tsnax "translin-associated fac	0.520	0.348	0.427	6.4e-19
MGI|MGI:1855672	290	Tsnax "translin-associated fac	0.520	0.348	0.436	1e-18
UNIPROTKB|F1RGU1	290	TSNAX "Uncharacterized protein	0.577	0.386	0.403	1.3e-18
UNIPROTKB|Q99598	290	TSNAX "Translin-associated pro	0.577	0.386	0.394	1.7e-18
UNIPROTKB|E1BQ94	260	LOC100859597 "Uncharacterized	0.546	0.407	0.462	3.6e-18
UNIPROTKB|G3MY03	290	TSNAX "Uncharacterized protein	0.577	0.386	0.394	4.3e-18
ZFIN|ZDB-GENE-050913-80	281	tsnax "translin-associated fac	0.726	0.501	0.367	1.6e-17

TAIR|locus:2044264 AT2G03780 "AT2G03780" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 114/173 (65%), Positives = 138/173 (79%)

Query:    20 MASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSR 79
             MA K K  RLHQ++ + ++ + K+ RT++TES MKDAF+ YA YLN  NEKRERVVK SR
Sbjct:    17 MAPKLKPQRLHQIAESGVEHLVKKARTMSTESSMKDAFSTYADYLNNFNEKRERVVKVSR 76

Query:    80 DITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYS 139
             DIT+NSKKVIFQVHR+S+DNKEEVL+KA  DLEAV+DQ+ +RL+KELQGTDFWKLRRAYS
Sbjct:    77 DITMNSKKVIFQVHRLSKDNKEEVLEKAGKDLEAVRDQHFARLMKELQGTDFWKLRRAYS 136

Query:   140 PGVQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXSDPAIEPLQINVFDYLLGV 192
             PGVQEYVEAATF KFC +GT              SDP++EPLQIN+ DY+LG+
Sbjct:   137 PGVQEYVEAATFYKFCLSGTLCTLDEINTTLVPLSDPSLEPLQINILDYILGL 189

GO:0003677 "DNA binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

DICTYBASE|DDB_G0284837 tsnax "translin-associated protein X" [Dictyostelium discoideum (taxid:44689)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 48/148 (32%), Positives = 90/148 (60%)

Query:    46 TITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLK 105
             +I  E  +K  F++++  L+E N++RER+VK+SRDITI SK+VI  + R   ++K+E+LK
Sbjct:    50 SIFNEPKIKSMFSSFSKKLDEDNDRRERIVKNSRDITIASKRVISLLQRAVWEDKQEILK 109

Query:   106 KAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTXXXXXX 165
             +++ +L+ + + +   ++KEL   ++WK ++A++ GVQEY+EA +F  +   G       
Sbjct:   110 QSKQNLQPIFNLF-GNIIKELDQQEYWKFQKAFTNGVQEYIEAVSFQYYIEFGALIPLDS 168

Query:   166 XXXXXXXXSD-PAIEPLQINVFDYLLGV 192
                      +  ++    I++ DY LG+
Sbjct:   169 ILIPIKEALNLDSLGQFNISIDDYALGI 196

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|J9P139 TSNAX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 204 (76.9 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
 Identities = 46/114 (40%), Positives = 73/114 (64%)

Query:    45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEV 103
             + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + EE+
Sbjct:    27 KDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEI 86

Query:   104 LKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 157
             L ++E  L+ V+ Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T
Sbjct:    87 LTESEIKLDGVR-QKILQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKT 139

GO:0043565 "sequence-specific DNA binding" evidence=IEA

RGD|621574 Tsnax "translin-associated factor X" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
 Identities = 44/103 (42%), Positives = 69/103 (66%)

Query:    56 AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
             AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + EE+L ++E+ L+ V
Sbjct:    38 AFKSFQQELDTRHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESESKLDGV 97

Query:   115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 157
             + + + ++ +EL G D  +  RA + G+QEYVEA +F  F RT
Sbjct:    98 RQKML-QVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIRT 139

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031687 "A2A adenosine receptor binding" evidence=IPI

GO:0032403 "protein complex binding" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IDA

MGI|MGI:1855672 Tsnax "translin-associated factor X" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
 Identities = 45/103 (43%), Positives = 69/103 (66%)

Query:    56 AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEADLEAV 114
             AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + EE+L ++E+ L+ V
Sbjct:    38 AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESESKLDGV 97

Query:   115 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 157
             + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T
Sbjct:    98 R-QKILQVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIKT 139

GO:0003677 "DNA binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031687 "A2A adenosine receptor binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1RGU1 TSNAX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 203 (76.5 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 46/114 (40%), Positives = 73/114 (64%)

Query:    45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEV 103
             + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + EE+
Sbjct:    27 KDLNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEI 86

Query:   104 LKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 157
             L ++E  L+ V+ Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T
Sbjct:    87 LTESEIKLDGVR-QKILQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKT 139

GO:0005737 "cytoplasm" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|Q99598 TSNAX "Translin-associated protein X" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 45/114 (39%), Positives = 73/114 (64%)

Query:    45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEV 103
             + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + E++
Sbjct:    27 KDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDI 86

Query:   104 LKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 157
             L ++E  L+ V+ Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T
Sbjct:    87 LTESEIKLDGVR-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKT 139

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0031687 "A2A adenosine receptor binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0008565 "protein transporter activity" evidence=TAS

GO:0015031 "protein transport" evidence=TAS

UNIPROTKB|E1BQ94 LOC100859597 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 50/108 (46%), Positives = 72/108 (66%)

Query:    51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHR-ISRDNKEEVLKKAEA 109
             SY+    A +   L+  ++K ER+VK SRDITI SK+ IF +HR IS  N EEVL ++E 
Sbjct:     4 SYLNTNSAAFQLELDTRHDKYERLVKLSRDITIESKRTIFLLHRYISAPNGEEVLNESEV 63

Query:   110 DLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 157
              L+AV+ + I ++ +EL G D ++  RA SPG+QEY+EA +F  F +T
Sbjct:    64 KLDAVRRK-IKQVAQELIGEDMYQFHRAISPGLQEYIEAVSFQYFIKT 110

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|G3MY03 TSNAX "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 196 (74.1 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
 Identities = 45/114 (39%), Positives = 72/114 (63%)

Query:    45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEV 103
             + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + EE+
Sbjct:    27 KDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEI 86

Query:   104 LKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 157
             L ++E  L+ V+ Q I ++ +EL   D  +  RA + G+QEYVEA +F  F +T
Sbjct:    87 LTESEVKLDGVR-QKILQVAQELSVEDMHQFHRAITTGLQEYVEAVSFQHFIKT 139

GO:0005737 "cytoplasm" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

ZFIN|ZDB-GENE-050913-80 tsnax "translin-associated factor X" [Danio rerio (taxid:7955)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 57/155 (36%), Positives = 82/155 (52%)

Query:    51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEVLKKAEA 109
             S +  AF  +   L+   +K ER+VK SRD+TI SK+ IF +HR+ S  + EE+L +AE 
Sbjct:    29 SVVISAFKVFQQELDTRYDKYERLVKISRDVTIESKRTIFLLHRVASVPDVEEILNEAEV 88

Query:   110 DLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTXXXXXXXXXX 169
              L+ V+ Q I ++ +EL+G D  +  RA++PG+QEYVEA +F  F R  +          
Sbjct:    89 KLDGVR-QKIGQIAEELRGEDLHQFHRAFTPGIQEYVEAVSFHHFIRHRSLISLEEINAR 147

Query:   170 XXXXSD------------PAIEPLQINVFDYLLGV 192
                  D            P +   QI   DYLLGV
Sbjct:   148 LVFIRDNNKAVGEGTFSSPCVLTFQITPTDYLLGV 182

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0006044001	hypothetical protein (307 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_280084	hypothetical protein (240 aa)					•		•	•	0.685

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
pfam01997	187	pfam01997, Translin, Translin family	1e-34
COG2178	204	COG2178, COG2178, Predicted RNA-binding protein of	3e-12
PRK14562	204	PRK14562, PRK14562, haloacid dehalogenase superfam	3e-08

>gnl|CDD|202084 pfam01997, Translin, Translin family

 Score =  120 bits (303), Expect = 1e-34
 Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 11/126 (8%)

Query: 68  NEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQ 127
           ++ RE ++K SRDIT  SKK IF +HR   +  EE+LK+A+  L  +K        + L+
Sbjct: 1   HDAREELIKISRDITRLSKKAIFALHRGDAEEAEELLKEAKELLAKLK--------ELLK 52

Query: 128 GTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFD 187
           G  +++   A+S  +QEYVEA TF  +  TGTL  LEEL   L    +       +   D
Sbjct: 53  GHPYYRYSGAWSNALQEYVEALTFYHYLETGTLPSLEELGEILGVPVNDGF---HVTPED 109

Query: 188 YLLGVI 193
           YLLG+ 
Sbjct: 110 YLLGLF 115

Members of this family include Translin that interacts with DNA and forms a ring around the DNA. This family also includes human translin-associated protein X, which was found to interact with translin with yeast two-hybrid screen. Length = 187

>gnl|CDD|225089 COG2178, COG2178, Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 23/140 (16%)

Query: 53  MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLE 112
           +++   +    L E ++ RE  +K SR+I   S + IF +HR   +  E+ LKKA   +E
Sbjct: 1   LREEINSIREVLQEKDKAREEALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVE 60

Query: 113 AVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLP 172
            +K        + L G          +  +QEYVEA       + G L            
Sbjct: 61  KLK--------RLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRL------------ 100

Query: 173 LSDPAIEPLQINVFDYLLGV 192
              P+ E L +    Y+LG+
Sbjct: 101 ---PSPEELGVPPIAYILGL 117

Length = 204

>gnl|CDD|184746 PRK14562, PRK14562, haloacid dehalogenase superfamily protein; Provisional

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 23/130 (17%)

Query: 63  YLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRL 122
            L E +E RE  +K SR+I   S   I  +HR   +  E++LK+AE  ++ +K+  + + 
Sbjct: 12  ELEEKDEAREEALKLSREIVRLSGDAIRAIHRGDFEEAEKLLKEAEELVKELKE--LLKD 69

Query: 123 VKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQ 182
             EL    +       +  +QEYVEA           +   EEL                
Sbjct: 70  HPELYYAGY-----VGTA-LQEYVEALLVYSLLFENKIPSPEELG--------------- 108

Query: 183 INVFDYLLGV 192
           +    YLLG+
Sbjct: 109 VPEAAYLLGL 118

Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
KOG3066	271	consensus Translin-associated protein X [General f	100.0
PF01997	200	Translin: Translin family; InterPro: IPR002848 Tra	99.97
PRK14562	204	haloacid dehalogenase superfamily protein; Provisi	99.97
KOG3067	226	consensus Translin family protein [General functio	99.93
COG2178	204	Predicted RNA-binding protein of the translin fami	99.9

>KOG3066 consensus Translin-associated protein X [General function prediction only]

Probab=100.00  E-value=7.1e-35  Score=242.50  Aligned_cols=150  Identities=45%  Similarity=0.647  Sum_probs=140.8

Q ss_pred             ccccCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CChHHHHHHHHHHHHHHHHHHHH
Q 029345           42 KRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR-DNKEEVLKKAEADLEAVKDQYIS  120 (194)
Q Consensus        42 ~~~~~~~~~~~v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~-~~~~~~l~~A~~~l~~v~~~~~~  120 (194)
                      +..++|++++++++.|.+|+++|+++||+||+|+|+|||||..||++||+|||..+ .+.++++.++...+..++.+.+.
T Consensus        24 qkartmsteSsm~~aF~sf~~~L~~~~dKrEriVklSRdITi~SKr~IFllHr~ss~~~~e~~l~~~~~~le~vr~k~f~  103 (271)
T KOG3066|consen   24 QKARTMSTESSMEEAFLSFKNFLQEDQDKRERIVKLSRDITIQSKRMIFLLHRTSSSGFPEPKLFDRTSILEKVRHKEFE  103 (271)
T ss_pred             ccccccCccchHHHHHHHHHHHHHHhHHHHHHHHhhhhhheeccceeeeeeeecccCCCcchhhhhhhhHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999987 56788999999999999999999


Q ss_pred             HHHHhhcCCChhhhhhhhchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhcccc
Q 029345          121 RLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI  193 (194)
Q Consensus       121 ~La~~l~~~~y~ry~~~~s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~  193 (194)
                      +|+.+|.|.++|+|++++++|+||||||++|++|+.+|+|.+.+|++..+.++..+  .++.|++-||++|++
T Consensus       104 ~l~~EL~G~d~~kf~rA~t~GlQEYVEAvtF~~f~lsgtLc~~dein~~lvpl~~~--~rl~in~iDYvLGva  174 (271)
T KOG3066|consen  104 SLKRELAGLDADKFSRACTHGLQEYVEAVTFKFFLLSGTLCQTDEINSCLVPLDSS--FRLSINFIDYVLGVA  174 (271)
T ss_pred             HHHHHhcCCcHHHHHHhhcccHHHHHHHHHHHHHHHhccccchhhhhheecccCCc--cceeeeHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999877665444  679999999999986

>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments

Probab=99.97  E-value=4e-32  Score=225.54  Aligned_cols=123  Identities=43%  Similarity=0.751  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhhhhhchhHHHHHH
Q 029345           68 NEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVE  147 (194)
Q Consensus        68 ~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~~~~~~l~~A~~~l~~v~~~~~~~La~~l~~~~y~ry~~~~s~~lQEyvE  147 (194)
                      ||+||+|+|+||||++.||++||+|||++.+++.+++++|++.++++++ .++.++ ++++.+||+|++.|++|+|||||
T Consensus         1 ~d~RE~iik~sRdi~~~Sk~~I~~lhr~~~~~~~~~l~~a~~~l~~l~~-~~~~l~-~~~~~~~~~y~~~~s~~lQE~vE   78 (200)
T PF01997_consen    1 HDRRERIIKLSRDITRLSKKIIFALHRIDQEKAEKILEEAEEKLKELKK-LLKQLA-ELPGHPFYRYHGAYSPGLQEYVE   78 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCTCTTHHHHHHHHHHHHHHHHHHC-HSHHHH-HCTTCGHHHHGGGTHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-HHhhhc-ccCCCcHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999998888999999999999996 799999 99999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhcccc
Q 029345          148 AATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI  193 (194)
Q Consensus       148 A~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~  193 (194)
                      |++|++||++|+|+|++|+++ +++...+....|+|+++|||+||+
T Consensus        79 a~~f~~~l~~~~L~t~~ev~~-~l~~~~~~~~~~~v~~~dYL~Gl~  123 (200)
T PF01997_consen   79 AISFYHYLETGRLLTPEEVGE-ILGFSEDDEDRFHVTPEDYLLGLA  123 (200)
T ss_dssp             HHHHHHHHHHSSS--HHHHHH-HCTCBSSTSCSSB--HHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCHHHHHH-HHhhccccccceecCHHHHHHHHH
Confidence            999999999999999999998 556766668889999999999996

They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.

>PRK14562 haloacid dehalogenase superfamily protein; Provisional

Probab=99.97  E-value=1.5e-30  Score=217.10  Aligned_cols=118  Identities=26%  Similarity=0.301  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 029345           53 MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFW  132 (194)
Q Consensus        53 v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~~~~~~l~~A~~~l~~v~~~~~~~La~~l~~~~y~  132 (194)
                      +.++|++++++||++|++||+|+++||||++.||++||.+||++..+       |.+.+.++.+ .+.+|++.+++.++|
T Consensus         2 ~~~~~~~~~~~Ld~~~~~RE~iik~sRdI~~~Sk~~I~~lHr~~~~~-------a~~~l~~a~~-~~~~l~~~~~~~~~~   73 (204)
T PRK14562          2 IEEIIDSIREELEEKDEAREEALKLSREIVRLSGDAIRAIHRGDFEE-------AEKLLKEAEE-LVKELKELLKDHPEL   73 (204)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH-------HHHHHHHHHH-HHHHHHHHhccCchh
Confidence            46899999999999999999999999999999999999999985444       4444444444 355666789999999


Q ss_pred             hhhhhhchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhcccc
Q 029345          133 KLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI  193 (194)
Q Consensus       133 ry~~~~s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~  193 (194)
                      +|++.|++++||||||++|++|+++|+|||++|               |+|+++|||+|||
T Consensus        74 ~y~~~~~~~lQEyvEA~~f~~~l~~~~l~s~ee---------------l~v~~~dYLlGl~  119 (204)
T PRK14562         74 YYAGYVGTALQEYVEALLVYSLLFENKIPSPEE---------------LGVPEAAYLLGLA  119 (204)
T ss_pred             hhhhhcchHHHHHHHHHHHHHHHcCCCCCCHHH---------------cCCCHHHHHhHHH
Confidence            999999999999999999999999999999999               6899999999996

>KOG3067 consensus Translin family protein [General function prediction only]

Probab=99.93  E-value=3.4e-25  Score=181.08  Aligned_cols=139  Identities=21%  Similarity=0.340  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 029345           54 KDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD--NKEEVLKKAEADLEAVKDQYISRLVKELQGTDF  131 (194)
Q Consensus        54 ~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~--~~~~~l~~A~~~l~~v~~~~~~~La~~l~~~~y  131 (194)
                      .+||.++++.+|+++++||+|++.+++|+..+|.+...|+-+|+.  ..++.|..|++.+..++. ++..|++..+..+|
T Consensus         5 ~sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq-~~~~LaE~~~~~qy   83 (226)
T KOG3067|consen    5 KSIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQ-KYRMLAELPPAGQY   83 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH-HHHHHhhcCCccce
Confidence            589999999999999999999999999999999999999999985  478899999999999886 79999999999999


Q ss_pred             hhhhhhhchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhccccC
Q 029345          132 WKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVIA  194 (194)
Q Consensus       132 ~ry~~~~s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~~  194 (194)
                      |||++.|.+.+|..|+..+|.+||++|.|+|+++|.+ ++|++.+..++||++++|||.|+++
T Consensus        84 yry~~~w~~~~Q~vv~l~alv~~Let~~Llt~e~v~e-ilgl~p~~s~~FhLdvedyl~gvl~  145 (226)
T KOG3067|consen   84 YRYNGHWRRSTQRVVSLPALVAWLETGTLLTREEVTE-ILGLEPDRSEGFHLDVEDYLSGVLF  145 (226)
T ss_pred             EEecchHHHHHHHHHHHHHHHHHHhhcccccHHHHHH-HhcCCccccccceeeHHHHHHHHHH
Confidence            9999999999999999999999999999999999999 7899888888999999999999874

>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=4.5e-23  Score=169.90  Aligned_cols=115  Identities=32%  Similarity=0.441  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh
Q 029345           54 KDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWK  133 (194)
Q Consensus        54 ~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~~~~~~l~~A~~~l~~v~~~~~~~La~~l~~~~y~r  133 (194)
                      .+.+.++++.|+++++.||+++++||+|++.|+.+|+++||++.+.+...+++|.+.+.+++        ..+.  +|+.
T Consensus         2 ~e~i~si~~~L~e~d~~REE~l~lsRei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk--------~~l~--~~pe   71 (204)
T COG2178           2 REEINSIREVLQEKDKAREEALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLK--------RLLA--GFPE   71 (204)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--------HHHh--hhHH
Confidence            46799999999999999999999999999999999999999976655555666555554444        4666  4666


Q ss_pred             hhh--hhchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhcccc
Q 029345          134 LRR--AYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI  193 (194)
Q Consensus       134 y~~--~~s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~  193 (194)
                      +++  ..++|+||||||.+|+.|+.++.+|+++|               ++|++.+||+|||
T Consensus        72 l~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~E---------------L~V~~~~YilGl~  118 (204)
T COG2178          72 LYFAGFVTTALQEYVEATLLYSILKDGRLPSPEE---------------LGVPPIAYILGLA  118 (204)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHH---------------cCCCHHHHHHHHH
Confidence            655  55999999999999999999999999999               6899999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	194
3pja_J	290	Crystal Structure Of Human C3po Complex Length = 29		5e-16
3axj_B	298	High Resolution Crystal Structure Of C3po Length =		2e-13
3riu_C	269	Crystal Structure Of Drosophila Hexameric C3po Form		3e-13

>pdb|3PJA|J Chain J, Crystal Structure Of Human C3po Complex Length = 290

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Query: 45  RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDNKEEV 103
           + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  + E++
Sbjct: 27  KDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDI 86
Query: 104 LKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 157
           L ++E  L+ V+ Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T
Sbjct: 87  LTESEIKLDGVR-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKT 139

>pdb|3AXJ|B Chain B, High Resolution Crystal Structure Of C3po Length = 298

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 7/129 (5%)
Query: 33  SGTALQSIAKRPRTITTESYMKDA--FANYAGYLNEL---NEKRERVVKSSRDITINSKK 87
            G   ++ A R R I      +D+     +  Y NEL   +++ ER+VK SRDITI SK+
Sbjct: 5   GGAGHRNTAPRKRQIPAAQLDEDSPIVQQFRIYSNELIXKHDRHERIVKLSRDITIESKR 64
Query: 88  VIFQVHRIS--RDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEY 145
           +IF +H I   + NKE+VL++A   L  +       +  EL+  D ++ R +YSPG+QE+
Sbjct: 65  IIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEF 124
Query: 146 VEAATFCKF 154
           ++A T+ ++
Sbjct: 125 IQAYTYXEY 133

>pdb|3RIU|C Chain C, Crystal Structure Of Drosophila Hexameric C3po Formed By Truncated Translin And Trax Length = 269

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
Query: 63  YLNEL---NEKRERVVKSSRDITINSKKVIFQVHRIS--RDNKEEVLKKAEADLEAVKDQ 117
           Y NEL   +++ ER+VK SRDITI SK++IF +H I   + NKE+VL++A   L  +   
Sbjct: 8   YSNELIXKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAV 67
Query: 118 YISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKF 154
               +  EL+  D ++ R +YSPG+QE++EA T+ ++
Sbjct: 68  NFRAVALELRDQDVYQFRSSYSPGLQEFIEAYTYXEY 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
3qb5_K	290	Translin-associated protein X; alpha helical bundl	2e-35
3axj_A	249	GM27569P, translin; translin/TRAX heterodimer, pas	3e-32
1j1j_A	240	Translin; testis/brain RNA binding protein, ssDNA	3e-32
3axj_B	298	TRAX, translin associated factor X, isoform B; tra	7e-31
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J Length = 290

 Score =  124 bits (313), Expect = 2e-35
 Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 19/171 (11%)

Query: 41  AKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI-SRDN 99
            +  + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +HRI S  +
Sbjct: 23  RREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPD 82

Query: 100 KEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGT 159
            E++L ++E  L+ V+ +   ++ +EL G D  +  RA + G+QEYVEA +F  F +T +
Sbjct: 83  MEDILTESEIKLDGVRQKI-FQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRS 141

Query: 160 LLDLEELNAGLL------------PLSDPAIEP-----LQINVFDYLLGVI 193
           L+ ++E+N  L+            P SD   +      L++   DYLLGV 
Sbjct: 142 LISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVA 192

>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A Length = 249

 Score =  115 bits (290), Expect = 3e-32
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 6/157 (3%)

Query: 41  AKRPRTITTESYM--KDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD 98
                +    S     D F+NY  Y++   E RE +    R+I   SK+   ++  I  D
Sbjct: 6   HHHHHSQDPMSNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSD 65

Query: 99  NK--EEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCR 156
                     A   +E    +Y  +L + +    +++    ++   Q  +       +  
Sbjct: 66  LSQISAACGLARKQVELCAQKY-QKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLE 124

Query: 157 TGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI 193
            G L+  E +   +L L     E   ++V DYLLG++
Sbjct: 125 AGFLVTRETVAE-MLGLKISQSEGFHLDVEDYLLGIL 160

>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A Length = 240

 Score =  115 bits (289), Expect = 3e-32
 Identities = 26/145 (17%), Positives = 59/145 (40%), Gaps = 6/145 (4%)

Query: 53  MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI----SRDNKEEVLKKAE 108
           + + F    G+L    + RE + K  + +   +++++  +  +       +  +   KA 
Sbjct: 15  VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAR 74

Query: 109 ADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNA 168
                VK   ++ L  +     +++    +   +Q  V  A F  +  T TL+  E +  
Sbjct: 75  EHFGTVKTH-LTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTE 133

Query: 169 GLLPLSDPAIEPLQINVFDYLLGVI 193
            +L +     +   ++V DYL GV+
Sbjct: 134 -ILGIEPDREKGFHLDVEDYLSGVL 157

>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C Length = 298

 Score =  113 bits (282), Expect = 7e-31
 Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 2/128 (1%)

Query: 42  KRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRI--SRDN 99
                +  +S +   F  Y+  L   +++ ER+VK SRDITI SK++IF +H I   + N
Sbjct: 19  IPAAQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQN 78

Query: 100 KEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGT 159
           KE+VL++A   L  +       +  EL+  D ++ R +YSPG+QE+++A T+ ++     
Sbjct: 79  KEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEFIQAYTYMEYLCHED 138

Query: 160 LLDLEELN 167
                E  
Sbjct: 139 AEGENETK 146

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 40/164 (24%)

Query: 7   LRSWISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFA-NYAGYL- 64
            +S +S      I+ SK       +L  T L    K+   +  + ++++    NY  +L 
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS---KQEEMV--QKFVEEVLRINY-KFLM 95

Query: 65  ----NELNEK--RERVVKSSRDITINSKKVIFQVHRISRDNKEEVLKKAEADLEAVKD-Q 117
                E  +     R+    RD   N  +V F  + +SR      L++A   L  ++  +
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQA---LLELRPAK 151

Query: 118 YI----------SRLVKE-LQGTD---------FW-KLRRAYSP 140
            +          + +  +               FW  L+   SP
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 9e-04
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 17/89 (19%)

Query: 66  ELNEKRERVVKSSRDI-TINSKKVI--FQVHRISRDNKEEVLKKAEADLEAVKDQYISRL 122
           E  E +       +DI ++     +  F    +  D  + +L K E D       +I   
Sbjct: 10  ETGEHQY----QYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEID-------HIIMS 57

Query: 123 VKELQGTD--FWKLRRAYSPGVQEYVEAA 149
              + GT   FW L       VQ++VE  
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
3qb5_K	290	Translin-associated protein X; alpha helical bundl	100.0
1j1j_A	240	Translin; testis/brain RNA binding protein, ssDNA	100.0
3axj_B	298	TRAX, translin associated factor X, isoform B; tra	100.0
3axj_A	249	GM27569P, translin; translin/TRAX heterodimer, pas	100.0

>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J

Probab=100.00  E-value=5.3e-37  Score=266.63  Aligned_cols=147  Identities=37%  Similarity=0.626  Sum_probs=130.4

Q ss_pred             cCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHHHHHHHHHHH
Q 029345           45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD-NKEEVLKKAEADLEAVKDQYISRLV  123 (194)
Q Consensus        45 ~~~~~~~~v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~-~~~~~l~~A~~~l~~v~~~~~~~La  123 (194)
                      +.+++++++.++|++|+++||++||+||+|+|+|||||+.||++||+|||+|.. +.+++|++|++.+.++++ .++.|+
T Consensus        27 ~~~~~~~~v~~~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~i~~-~~~~La  105 (290)
T 3qb5_K           27 KDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQ-KIFQVA  105 (290)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             cCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH-HHHHHH
Confidence            568888999999999999999999999999999999999999999999999975 578899999999999976 799999


Q ss_pred             HhhcCCChhhhhhhhchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCC-C-----------------CCCcCh
Q 029345          124 KELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAI-E-----------------PLQINV  185 (194)
Q Consensus       124 ~~l~~~~y~ry~~~~s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~-~-----------------~~~V~~  185 (194)
                      +++++.+||+|+++|++++||||||++|++||++++|+|++||++.| ++..+.. +                 .|+|++
T Consensus       106 ~~l~~~~~yry~~~~s~~lQEyVEA~sf~~yL~~~~Lit~eev~~~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  184 (290)
T 3qb5_K          106 QELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQL-IFTTEDNGKENKTPSSDAQDKQFGTWRLRVTP  184 (290)
T ss_dssp             HHHSSSCSTTTGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHTT-EECC--------------------CEECCCCH
T ss_pred             HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHh-cccccccccccccccccccccccccceecCCH
Confidence            99999999999999999999999999999999999999999999844 4432221 1                 399999


Q ss_pred             HHhhcccc
Q 029345          186 FDYLLGVI  193 (194)
Q Consensus       186 eDYLlGL~  193 (194)
                      +|||+||+
T Consensus       185 eDYLlGL~  192 (290)
T 3qb5_K          185 VDYLLGVA  192 (290)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999996

>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A

Probab=100.00  E-value=2.4e-36  Score=256.31  Aligned_cols=142  Identities=18%  Similarity=0.348  Sum_probs=132.9

Q ss_pred             cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029345           50 ESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR----DNKEEVLKKAEADLEAVKDQYISRLVKE  125 (194)
Q Consensus        50 ~~~v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~----~~~~~~l~~A~~~l~~v~~~~~~~La~~  125 (194)
                      +|++.++|+.++++||+++|+||+|+|+||||++.||++||+|||+|+    .+.+++|++|++.+.++++ .+++|+++
T Consensus        12 ~~~~~~~f~~~~~~Ld~~~d~REriik~sRdI~~~Sk~~I~~Lhr~~~~~~~~~~~~~~~~A~~~l~~~~~-~~~~L~~~   90 (240)
T 1j1j_A           12 SMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT-HLTSLKTK   90 (240)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            488999999999999999999999999999999999999999999984    2478899999999999987 58999999


Q ss_pred             hcCCChhhhhhhhchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhcccc
Q 029345          126 LQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI  193 (194)
Q Consensus       126 l~~~~y~ry~~~~s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~  193 (194)
                      +++.+||+|++.|++++||||||++|++||++|+|+|++||++ .+|++.+...+|+|+++|||+||+
T Consensus        91 l~~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~-~L~~~~~~~~~f~v~~edYLlGL~  157 (240)
T 1j1j_A           91 FPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTE-ILGIEPDREKGFHLDVEDYLSGVL  157 (240)
T ss_dssp             SCGGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHH-HHTCCCSSSSSSCCCHHHHHHHHH
T ss_pred             cccchHHHHhccccHHHHHHHHHHHHHHHHcCCCCCCHHHHHH-HhCCCccccccCcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998 457777778899999999999996

>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C

Probab=100.00  E-value=4.3e-36  Score=261.78  Aligned_cols=147  Identities=31%  Similarity=0.535  Sum_probs=134.9

Q ss_pred             CCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHHHHHHHHHHHH
Q 029345           46 TITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR--DNKEEVLKKAEADLEAVKDQYISRLV  123 (194)
Q Consensus        46 ~~~~~~~v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~--~~~~~~l~~A~~~l~~v~~~~~~~La  123 (194)
                      ++++++++.++|+.|+++||++||+||+|+|+||||++.||++||+|||+|.  .+.+++|++|++.+.++++++++.|+
T Consensus        23 ~~~~~~~v~~~F~~~~~~Ld~~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~~~la  102 (298)
T 3axj_B           23 QLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVA  102 (298)
T ss_dssp             CCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             ccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6888999999999999999999999999999999999999999999999998  67889999999999999987889999


Q ss_pred             HhhcCCChhhhhhhhchhHHHHHHHHHHHHHHh---c------CCCCCHHHHhhccCCCCC-------------------
Q 029345          124 KELQGTDFWKLRRAYSPGVQEYVEAATFCKFCR---T------GTLLDLEELNAGLLPLSD-------------------  175 (194)
Q Consensus       124 ~~l~~~~y~ry~~~~s~~lQEyvEA~~f~~~L~---~------~~Llt~eev~~~llgl~~-------------------  175 (194)
                      .++++.+||+|+++|++++||||||++|++||+   +      |+|+|++||++.| ++..                   
T Consensus       103 ~~l~~~~~y~y~~~~s~~lQE~VEA~~f~~yL~~~~~~~~~~~~~L~t~eev~~~L-~~~~~~~~~~~~~~~~~~~~~d~  181 (298)
T 3axj_B          103 LELRDQDVYQFRSSYSPGLQEFIQAYTYMEYLCHEDAEGENETKSVSDWQAIQAVM-QYVEESSQPKEEPTEGEDVQAIA  181 (298)
T ss_dssp             HHTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGCCCCCHHHHHHHC-EEECCCC----------------
T ss_pred             HHcCccCHHHHHhccCHHHHHHHHHHHHHHHHhccccccccccCCCCCHHHHHHHh-ccccccccccccccccccccccc
Confidence            999999999999999999999999999999999   8      9999999999854 3321                   


Q ss_pred             ----CCCCCCCcChHHhhcccc
Q 029345          176 ----PAIEPLQINVFDYLLGVI  193 (194)
Q Consensus       176 ----~~~~~~~V~~eDYLlGL~  193 (194)
                          +....|||+++|||+||+
T Consensus       182 ~~~~~~~~~f~v~~edYLlGL~  203 (298)
T 3axj_B          182 QVESPKKFQFFVDPTEYILGLS  203 (298)
T ss_dssp             ----CCEEECCCCHHHHHHHHH
T ss_pred             ccccccccccCCCHHHHHHHHH
Confidence                111268999999999996

>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A

Probab=100.00  E-value=5.8e-36  Score=255.20  Aligned_cols=141  Identities=21%  Similarity=0.322  Sum_probs=132.1

Q ss_pred             chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 029345           51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD--NKEEVLKKAEADLEAVKDQYISRLVKELQG  128 (194)
Q Consensus        51 ~~v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~--~~~~~l~~A~~~l~~v~~~~~~~La~~l~~  128 (194)
                      +++.++|+.|+++||++||+||+|+|+||||++.||++||+|||+|+.  +.+++|++|++.+.++++ .+++|++++++
T Consensus        18 ~~i~~iF~~~~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~-~~~~L~~~l~~   96 (249)
T 3axj_A           18 FVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQ-KYQKLAELVPA   96 (249)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHSCT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence            577899999999999999999999999999999999999999999964  467899999999999988 58999999999


Q ss_pred             CChhhhhhhhchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhcccc
Q 029345          129 TDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI  193 (194)
Q Consensus       129 ~~y~ry~~~~s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~  193 (194)
                      .+||+|++.|++++||||||++|++||++|+|+|++||++ .++++.+...+|+|+++|||+||+
T Consensus        97 ~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~-~L~~~~~~~~~f~v~~edYLlGL~  160 (249)
T 3axj_A           97 GQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAE-MLGLKISQSEGFHLDVEDYLLGIL  160 (249)
T ss_dssp             TCHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHH-HHTCBSSTTTSSBCCHHHHHHHHH
T ss_pred             CchHHHhhhccHHHHHHHHHHHHHHHHcCCCCCCHHHHHH-HhccccCCCcccccCHHHHHHHHH
Confidence            9999999999999999999999999999999999999998 557776677889999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	194
d1j1ja_	217	a.118.16.1 (A:) Translin {Human (Homo sapiens) [Ta	1e-33

>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 1e-33
 Identities = 27/145 (18%), Positives = 58/145 (40%), Gaps = 6/145 (4%)

Query: 53  MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISR----DNKEEVLKKAE 108
           + + F    G+L    + RE + K  + +   +++++  +  + +     +  +   KA 
Sbjct: 3   VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAR 62

Query: 109 ADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNA 168
                VK    + L  +     +++    +   +Q  V  A F  +  T TL+  E +  
Sbjct: 63  EHFGTVKTHL-TSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTE 121

Query: 169 GLLPLSDPAIEPLQINVFDYLLGVI 193
            L    D   +   ++V DYL GV+
Sbjct: 122 ILGIEPDRE-KGFHLDVEDYLSGVL 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1j1ja_	217	Translin {Human (Homo sapiens) [TaxId: 9606]}	100.0

>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=252.46  Aligned_cols=141  Identities=18%  Similarity=0.348  Sum_probs=132.7

Q ss_pred             chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----ChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029345           51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHRISRD----NKEEVLKKAEADLEAVKDQYISRLVKEL  126 (194)
Q Consensus        51 ~~v~~iF~~~~~~Ld~~~d~RE~Iik~sRdIt~~Sk~iIf~LHR~~~~----~~~~~l~~A~~~l~~v~~~~~~~La~~l  126 (194)
                      |++.++|++++++||++||+||+|+|+||||++.||++||+|||+|+.    ..++.+++|.+.++++++ .+.+|++++
T Consensus         1 m~~~~~F~~~~~~Ld~~~d~RE~lik~sRdI~~~sk~~I~~Lhr~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~l~~~~   79 (217)
T d1j1ja_           1 MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT-HLTSLKTKF   79 (217)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHH-HHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHH-HHHHHHHHc
Confidence            578899999999999999999999999999999999999999999874    356789999999999987 799999999


Q ss_pred             cCCChhhhhhhhchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCCCcChHHhhcccc
Q 029345          127 QGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGVI  193 (194)
Q Consensus       127 ~~~~y~ry~~~~s~~lQEyvEA~~f~~~L~~~~Llt~eev~~~llgl~~~~~~~~~V~~eDYLlGL~  193 (194)
                      ++.+||+|++.|++++||||||++|++|+++|+|+|++++++ +++++.+...+|+|+++|||+||+
T Consensus        80 ~~~~~y~y~~~~~~~lQE~vEA~~f~~~l~~~~l~s~eev~~-~l~~~~~~~~~~~v~~~dYL~Gl~  145 (217)
T d1j1ja_          80 PAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTE-ILGIEPDREKGFHLDVEDYLSGVL  145 (217)
T ss_dssp             CGGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHH-HHTCCCSSSSSSCCCHHHHHHHHH
T ss_pred             ccCcHHHHHhHhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH-HhCCCCCccccCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999998 557777888899999999999996