Citrus Sinensis ID: 029357

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MEYRKIKDEDNDGGGSSSGDLESLRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccccccccccccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
meyrkikdedndgggsssgdleslrgkpisvtnvasksselanwkRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNhegvtddnrlsttldevivyPIPAVLYLVKNLLQYYIFAyvdapgyqilknlNIISTGVLYRIILKKKLSEIQWAAFILLCCgcttaqlnsk
Flexible Loop (DISEMBL)
meyrkikdedndgggsssgdleslrgkpisvtnvasksselanwkrkSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHegvtddnrlsttlDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSK
Low Complexity Region (SEG)
MEYRKIKdedndgggsssgdleslRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSK
Disordered region (IsUnstruct)
****************************************LANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA*****
Disordered Region (DISOPRED)
***********************************************SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL***
Disordered Region (DISEMBL)
*********************ESLRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSK
Disordered Region (DISPRO)
***************************************ELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEYRKIKDEDNDGGGSSSGDLESLRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
F4JN00	352	CMP-sialic acid transport	yes	no	0.979	0.539	0.78	3e-84
Q8LGE9	340	CMP-sialic acid transport	no	no	0.716	0.408	0.402	1e-20
Q9C5H6	405	CMP-sialic acid transport	no	no	0.711	0.340	0.300	7e-13
Q8GY97	406	CMP-sialic acid transport	no	no	0.711	0.339	0.307	2e-12
Q90X48	440	Probable UDP-sugar transp	yes	no	0.706	0.311	0.303	6e-12
A6QPI1	425	Probable UDP-sugar transp	yes	no	0.639	0.291	0.333	7e-12
Q6DCG9	413	Probable UDP-sugar transp	N/A	no	0.639	0.300	0.338	1e-11
Q921R7	437	Probable UDP-sugar transp	yes	no	0.649	0.288	0.330	1e-11
Q5R4D7	424	Probable UDP-sugar transp	yes	no	0.639	0.292	0.328	2e-11
Q9BS91	424	Probable UDP-sugar transp	yes	no	0.639	0.292	0.320	9e-11

>sp|F4JN00|CSTR4_ARATH CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335 PE=2 SV=1

 Score =  310 bits (795), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 156/200 (78%), Positives = 167/200 (83%), Gaps = 10/200 (5%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+    S   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVAS---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLV TLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSE
Sbjct: 118 TTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNS 193
           IQWA FILLCCGCTTAQLNS
Sbjct: 178 IQWAGFILLCCGCTTAQLNS 197

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi (By similarity). Essential protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGE9|CSTR1_ARATH CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 83/144 (57%), Gaps = 5/144 (3%)

Query: 50  VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD 109
           V + LT+LTSSQ IL   S+  G Y+Y   T  FL E  K  +S   L   W     +  
Sbjct: 9   VAVLLTILTSSQGILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFL---WREMRTSSS 65

Query: 110 NRLSTTLD--EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIIL 167
                T D   V ++ IP+++YL+ N +Q+    YVD   YQI+ NL I++TG+L+R+ L
Sbjct: 66  TTSRITTDWKSVRLFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFL 125

Query: 168 KKKLSEIQWAAFILLCCGCTTAQL 191
           K+KLS++QW A  LL  G TT+Q+
Sbjct: 126 KRKLSKLQWMAIGLLAVGTTTSQV 149

Essential protein. Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5H6|CSTR3_ARATH CMP-sialic acid transporter 3 OS=Arabidopsis thaliana GN=UTR6 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 5/143 (3%)

Query: 56  VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-T 114
           +L   Q +L+  SK  GK+ +S  + NFL E  K   ++  L     H+ V +   LS +
Sbjct: 51  MLVGLQPVLVYMSKVDGKFNFSPISVNFLTEIAKVIFAIVMLLIQARHQKVGEKPLLSVS 110

Query: 115 TLDEV----IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKK 170
           T  +     ++  +PA+LY + N L++ +  Y +    ++L NL ++   VL ++++K++
Sbjct: 111 TFVQAARNNVLLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMVMKRR 170

Query: 171 LSEIQWAAFILLCCGCTTAQLNS 193
            S IQW A  LL  G +  QL S
Sbjct: 171 FSIIQWEALALLLIGISVNQLRS 193

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY97|CSTR2_ARATH CMP-sialic acid transporter 2 OS=Arabidopsis thaliana GN=At2g43240 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 5/143 (3%)

Query: 56  VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-T 114
           +L   Q +L+  SK  GK+ +S  + NFL E  K   ++  L     H+ V +   LS +
Sbjct: 53  MLVGLQPVLVYMSKVDGKFNFSPISVNFLTEIAKVIFAMVMLLFQARHQKVGEKPLLSLS 112

Query: 115 TLDEV----IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKK 170
           T  +     ++  +PA LY + N L++ +  Y +    ++L NL ++   VL ++I+K++
Sbjct: 113 TFVQAARNNMLLAVPAGLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMIMKRR 172

Query: 171 LSEIQWAAFILLCCGCTTAQLNS 193
            S IQW A  LL  G +  QL S
Sbjct: 173 FSIIQWEALALLLIGISINQLRS 195

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|Q90X48|S35A5_DANRE Probable UDP-sugar transporter protein SLC35A5 OS=Danio rerio GN=slc35a5 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 8/145 (5%)

Query: 46  RKSVVTLAL----TVLTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALSLAALARI 100
           R S  TLAL      L +S+ +L+ +S     KY+Y   + N + E +K    L    R+
Sbjct: 32  RSSAYTLALGLGFVTLGTSRILLLKFSGNEENKYDYLPASVNLMAEAIKLVFCLVMSVRV 91

Query: 101 WNHEGVTDDNRLSTTLDEVIVY---PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNII 157
              EG +  +   ++    + Y    +PA LY + NL+ +Y+ AY+      +  N+ I 
Sbjct: 92  IIREGRSFKDLGCSSGASFLSYLKWSVPAFLYFLDNLIIFYVIAYLQPAMAVLFSNIVIF 151

Query: 158 STGVLYRIILKKKLSEIQWAAFILL 182
           +T  L+R++LK++LS +QWA+ I+L
Sbjct: 152 TTAFLFRVVLKRRLSWVQWASLIIL 176

Danio rerio (taxid: 7955)

>sp|A6QPI1|S35A5_BOVIN Probable UDP-sugar transporter protein SLC35A5 OS=Bos taurus GN=SLC35A5 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 8/132 (6%)

Query: 57  LTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-- 113
           L+SS+ +L+ +S     KY+Y  TT N   E +K  L   AL   W  +     NR    
Sbjct: 28  LSSSRILLVKYSANEENKYDYLPTTVNVCSELVK--LVFCALVSFWVLKKEDHQNRKLRC 85

Query: 114 ---TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKK 170
                    + + IPA LY + NL+ +Y+ +Y+      I  N +II+T +L+RI+LK+ 
Sbjct: 86  GSWKEFFNFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRH 145

Query: 171 LSEIQWAAFILL 182
           L+ IQWA+ ++L
Sbjct: 146 LNGIQWASLLIL 157

Bos taurus (taxid: 9913)

>sp|Q6DCG9|S35A5_XENLA Probable UDP-sugar transporter protein SLC35A5 OS=Xenopus laevis GN=slc35a5 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 6/130 (4%)

Query: 57  LTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 115
           L SS+ +L+ +S     KY+Y   T N   E +K    +A   RI   E      R   +
Sbjct: 29  LGSSRLLLVKFSANEDNKYDYVPATVNVCAEAVKLLFCMAMSVRIIMTE--RRSFRCHAS 86

Query: 116 LDEVIVY---PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 172
           L     Y    +PA LY + NL+ +Y+ AY+      +L N  II+T V +R+ILK++LS
Sbjct: 87  LKHFCQYMKWAVPAFLYFLDNLIIFYVLAYLQPAMAVLLSNFVIITTAVFFRLILKRQLS 146

Query: 173 EIQWAAFILL 182
            +QWA+ ++L
Sbjct: 147 CVQWASLVIL 156

Xenopus laevis (taxid: 8355)

>sp|Q921R7|S35A5_MOUSE Probable UDP-sugar transporter protein SLC35A5 OS=Mus musculus GN=Slc35a5 PE=1 SV=3

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 4/130 (3%)

Query: 57  LTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALS-LAALARIWNHEGVTDDNRLST 114
           L+SS+ +L+ +S     KY+Y  TT N   E +K  L  L +L  I   +  +   R ++
Sbjct: 41  LSSSRILLVKYSANEENKYDYLPTTVNVCSELMKLILCILVSLCVIKKEDHQSRHLRCTS 100

Query: 115 --TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 172
                  + + IPA LY + NL+ +Y+ +Y+      I  N +II+T +L+RI+LK+ L+
Sbjct: 101 WKEFSSFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRHLN 160

Query: 173 EIQWAAFILL 182
            IQWA+ ++L
Sbjct: 161 WIQWASLLIL 170

Mus musculus (taxid: 10090)

>sp|Q5R4D7|S35A5_PONAB Probable UDP-sugar transporter protein SLC35A5 OS=Pongo abelii GN=SLC35A5 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 7/131 (5%)

Query: 57  LTSSQAILIVWS-KRAGKYEYSVTTANFLVETLK---CAL-SLAALARIWNHEGVTDDNR 111
           L+SS+ +L+ +S     KY+Y  TTAN   E +K   C L S   + +  +H+       
Sbjct: 29  LSSSRILLVKYSANEENKYDYLPTTANVCSELVKLVFCVLVSFCVIKK--DHQSRNLKYA 86

Query: 112 LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKL 171
                   + + IPA LY + NL+ +Y+ +Y+      I  N +II+T +L+RI+LK++L
Sbjct: 87  SWKEFSNFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRRL 146

Query: 172 SEIQWAAFILL 182
           + IQWA+ ++L
Sbjct: 147 NWIQWASLLIL 157

Pongo abelii (taxid: 9601)

>sp|Q9BS91|S35A5_HUMAN Probable UDP-sugar transporter protein SLC35A5 OS=Homo sapiens GN=SLC35A5 PE=1 SV=2

 Score = 66.6 bits (161), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 72/131 (54%), Gaps = 7/131 (5%)

Query: 57  LTSSQAILIVWS-KRAGKYEYSVTTANFLVETLK---CAL-SLAALARIWNHEGVTDDNR 111
           L+SS+ +L+ +S     KY+Y  TT N   E +K   C L S   + +  +H+       
Sbjct: 29  LSSSRILLVKYSANEENKYDYLPTTVNVCSELVKLVFCVLVSFCVIKK--DHQSRNLKYA 86

Query: 112 LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKL 171
                 + + + IPA LY + NL+ +Y+ +Y+      I  N +II+T +L+RI+LK++L
Sbjct: 87  SWKEFSDFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRRL 146

Query: 172 SEIQWAAFILL 182
           + IQWA+ + L
Sbjct: 147 NWIQWASLLTL 157

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
449444425	360	PREDICTED: CMP-sialic acid transporter 4	0.994	0.536	0.794	9e-87
395486311	354	CMP-sialic acid transporter-like protein	0.984	0.539	0.803	7e-85
255564904	356	CMP-sialic acid transporter, putative [R	0.984	0.536	0.812	2e-84
297802420	352	At4g35335 [Arabidopsis lyrata subsp. lyr	0.979	0.539	0.79	1e-83
50198781	352	At4g35335 [Arabidopsis thaliana] gi|5197	0.979	0.539	0.785	2e-83
240256164	352	Nucleotide-sugar transporter family prot	0.979	0.539	0.78	2e-82
297744466	354	unnamed protein product [Vitis vinifera]	0.984	0.539	0.808	3e-80
225428328	707	PREDICTED: cysteine proteinase-like [Vit	0.984	0.270	0.808	4e-79
356501771	355	PREDICTED: probable UDP-sugar transporte	0.989	0.540	0.77	9e-78
356554409	355	PREDICTED: probable UDP-sugar transporte	0.994	0.543	0.748	1e-76

>gi|449444425|ref|XP_004139975.1| PREDICTED: CMP-sialic acid transporter 4-like [Cucumis sativus]

 Score =  324 bits (831), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 162/204 (79%), Positives = 177/204 (86%), Gaps = 11/204 (5%)

Query: 1   MEYRKIKDEDNDGGGSSSG-------DLESLR-GKPISVTNVA---SKSSELANWKRKSV 49
           MEYR+IKD++ DG G  SG       D+ESLR GKPIS +NVA   + S + + W++KS+
Sbjct: 1   MEYRRIKDQEKDGNGDGSGVGVAVADDIESLRAGKPISGSNVAKLGANSFDRSKWQQKSI 60

Query: 50  VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD 109
           VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANF+VETLKC LSLAAL+RIW  EGVT+D
Sbjct: 61  VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFMVETLKCVLSLAALSRIWGSEGVTED 120

Query: 110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
           NRLSTT DEVIVYPIPA LYLVKNLLQYYIFAYVDAPGYQILKN NIISTG+LYRIILKK
Sbjct: 121 NRLSTTYDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGILYRIILKK 180

Query: 170 KLSEIQWAAFILLCCGCTTAQLNS 193
           KLSEIQWAAFILLC GCTTAQLNS
Sbjct: 181 KLSEIQWAAFILLCAGCTTAQLNS 204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395486311|gb|AFN67104.1| CMP-sialic acid transporter-like protein [Vitis vinifera]

 Score =  318 bits (815), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 159/198 (80%), Positives = 170/198 (85%), Gaps = 7/198 (3%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPIS------VTNVASKSSELANWKRKSVVTLAL 54
           MEYRK+KD D D G     D+ESLRGK +S      +  +   S +   WKRKS+VTLAL
Sbjct: 1   MEYRKLKDLDKDDGAVGD-DIESLRGKALSGAHTNNMATLGGHSIDRTKWKRKSIVTLAL 59

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAAL RIW +EGVTDDNRLS+
Sbjct: 60  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALVRIWGNEGVTDDNRLSS 119

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           +LDEVIV+PIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI
Sbjct: 120 SLDEVIVFPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 179

Query: 175 QWAAFILLCCGCTTAQLN 192
           QWAAFILLC GCTTAQLN
Sbjct: 180 QWAAFILLCAGCTTAQLN 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564904|ref|XP_002523445.1| CMP-sialic acid transporter, putative [Ricinus communis] gi|223537273|gb|EEF38904.1| CMP-sialic acid transporter, putative [Ricinus communis]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 160/197 (81%), Positives = 175/197 (88%), Gaps = 6/197 (3%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPISV--TNVAS---KSSELANWKRKSVVTLALT 55
           MEYRKIKDED D G +   D+ESLR K +SV  +NVA+    S++ + WKRKS+VTLALT
Sbjct: 1   MEYRKIKDEDKDEGATGD-DIESLRNKSLSVAASNVAALGGGSNDRSKWKRKSIVTLALT 59

Query: 56  VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 115
            LTSSQAILIVWSKRAG+YEYSVTTANFLVETLKC LSLAALARIW +EGVT+DNRLSTT
Sbjct: 60  FLTSSQAILIVWSKRAGRYEYSVTTANFLVETLKCVLSLAALARIWKNEGVTEDNRLSTT 119

Query: 116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQ 175
           LDEV VYPIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLY++ILK+KLSEIQ
Sbjct: 120 LDEVSVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYQMILKRKLSEIQ 179

Query: 176 WAAFILLCCGCTTAQLN 192
           WAAFILLC GCTTAQLN
Sbjct: 180 WAAFILLCAGCTTAQLN 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802420|ref|XP_002869094.1| At4g35335 [Arabidopsis lyrata subsp. lyrata] gi|297314930|gb|EFH45353.1| At4g35335 [Arabidopsis lyrata subsp. lyrata]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 158/200 (79%), Positives = 169/200 (84%), Gaps = 10/200 (5%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+   G+   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVGA---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE
Sbjct: 118 TTYDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNS 193
           IQWA FILLCCGCTTAQLNS
Sbjct: 178 IQWAGFILLCCGCTTAQLNS 197

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50198781|gb|AAT70424.1| At4g35335 [Arabidopsis thaliana] gi|51971024|dbj|BAD44204.1| unnamed protein product [Arabidopsis thaliana] gi|53828601|gb|AAU94410.1| At4g35335 [Arabidopsis thaliana]

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 157/200 (78%), Positives = 168/200 (84%), Gaps = 10/200 (5%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+    S   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVAS---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSE
Sbjct: 118 TTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNS 193
           IQWA FILLCCGCTTAQLNS
Sbjct: 178 IQWAGFILLCCGCTTAQLNS 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256164|ref|NP_680766.5| Nucleotide-sugar transporter family protein [Arabidopsis thaliana] gi|380876874|sp|F4JN00.1|CSTR4_ARATH RecName: Full=CMP-sialic acid transporter 4; Short=CMP-SA-Tr 4; Short=CMP-Sia-Tr 4 gi|332661100|gb|AEE86500.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 156/200 (78%), Positives = 167/200 (83%), Gaps = 10/200 (5%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+    S   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVAS---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLV TLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSE
Sbjct: 118 TTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNS 193
           IQWA FILLCCGCTTAQLNS
Sbjct: 178 IQWAGFILLCCGCTTAQLNS 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744466|emb|CBI37728.3| unnamed protein product [Vitis vinifera]

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 160/198 (80%), Positives = 171/198 (86%), Gaps = 7/198 (3%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPIS------VTNVASKSSELANWKRKSVVTLAL 54
           MEYRK+KD D DGG     D+ESLRGK +S      +  +   S +   WKRKS+VTLAL
Sbjct: 1   MEYRKLKDLDKDGGAGGD-DIESLRGKALSGAHTNNMATLGGHSIDRTKWKRKSIVTLAL 59

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAAL RIW +EGVTDDNRLS+
Sbjct: 60  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALVRIWGNEGVTDDNRLSS 119

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           +LDEVIV+PIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI
Sbjct: 120 SLDEVIVFPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 179

Query: 175 QWAAFILLCCGCTTAQLN 192
           QWAAFILLC GCTTAQLN
Sbjct: 180 QWAAFILLCAGCTTAQLN 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428328|ref|XP_002279940.1| PREDICTED: cysteine proteinase-like [Vitis vinifera]

 Score =  299 bits (765), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 160/198 (80%), Positives = 171/198 (86%), Gaps = 7/198 (3%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPIS------VTNVASKSSELANWKRKSVVTLAL 54
           MEYRK+KD D DGG     D+ESLRGK +S      +  +   S +   WKRKS+VTLAL
Sbjct: 1   MEYRKLKDLDKDGGAGGD-DIESLRGKALSGAHTNNMATLGGHSIDRTKWKRKSIVTLAL 59

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAAL RIW +EGVTDDNRLS+
Sbjct: 60  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALVRIWGNEGVTDDNRLSS 119

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           +LDEVIV+PIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI
Sbjct: 120 SLDEVIVFPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 179

Query: 175 QWAAFILLCCGCTTAQLN 192
           QWAAFILLC GCTTAQLN
Sbjct: 180 QWAAFILLCAGCTTAQLN 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501771|ref|XP_003519697.1| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Glycine max]

 Score =  295 bits (754), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 154/200 (77%), Positives = 163/200 (81%), Gaps = 8/200 (4%)

Query: 1   MEYRKIKDEDN--DGGGSSSGD--LESLRGKPISV---TNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED   D G    G   L S+    +S    T + S   E   WKRKSVVTLA
Sbjct: 1   MEYRKIKDEDEVRDAGVEDVGKSFLLSVPDNDLSAEAETKIDSHR-EKVKWKRKSVVTLA 59

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LTVLTSSQAILIVWSKRAGKYEYSVTTANF+VETLKCA+SL AL RIW  +GV +DNRL+
Sbjct: 60  LTVLTSSQAILIVWSKRAGKYEYSVTTANFMVETLKCAISLVALGRIWKKDGVNEDNRLT 119

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TTLDEVIVYPIPA LYLVKNLLQYYIFAYVDAPGYQILKN NIISTGVLYRIILKKKLSE
Sbjct: 120 TTLDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGVLYRIILKKKLSE 179

Query: 174 IQWAAFILLCCGCTTAQLNS 193
           IQWAAF+LL  GCTTAQLNS
Sbjct: 180 IQWAAFVLLAAGCTTAQLNS 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554409|ref|XP_003545539.1| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Glycine max]

 Score =  290 bits (743), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 149/199 (74%), Positives = 158/199 (79%), Gaps = 6/199 (3%)

Query: 1   MEYRKIKDEDN--DGGGSSSGDLESLRGKPISVTNVAS----KSSELANWKRKSVVTLAL 54
           MEYRKIKDED   D G    G    L      +T+          E   WKRKSVVTLAL
Sbjct: 1   MEYRKIKDEDEVRDAGVEDVGKSFLLSVPDNDLTSEGETKIDSHREKVKWKRKSVVTLAL 60

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQ ILIVWSKRAGKYEYSVTTANF+VETLKCA+SL AL RIW  +GV +DNRL+T
Sbjct: 61  TVLTSSQGILIVWSKRAGKYEYSVTTANFMVETLKCAISLVALGRIWKKDGVNEDNRLTT 120

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           TLDEVIVYPIPA LYLVKNLLQYYIFAYVDAPGYQILKN NIISTGVLYRIILKK+LSEI
Sbjct: 121 TLDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGVLYRIILKKRLSEI 180

Query: 175 QWAAFILLCCGCTTAQLNS 193
           QWAAF+LL  GCTTAQLNS
Sbjct: 181 QWAAFVLLAAGCTTAQLNS 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:504955503	352	AT4G35335 [Arabidopsis thalian	0.989	0.545	0.747	3.7e-71
TAIR|locus:2152955	340	AT5G41760 [Arabidopsis thalian	0.726	0.414	0.415	8.7e-24
ZFIN|ZDB-GENE-030616-55	440	slc35a5 "solute carrier family	0.701	0.309	0.321	1.7e-13
UNIPROTKB|F1NTH1	432	SLC35A5 "Uncharacterized prote	0.634	0.284	0.360	2.1e-13
UNIPROTKB|H7BXF8	235	SLC35A5 "Probable UDP-sugar tr	0.639	0.527	0.320	2.7e-13
TAIR|locus:2081292	405	UTR6 "UDP-galactose transporte	0.711	0.340	0.300	3e-13
MGI|MGI:1921352	437	Slc35a5 "solute carrier family	0.649	0.288	0.330	4.6e-13
RGD|1564361	438	Slc35a5 "solute carrier family	0.649	0.287	0.330	4.6e-13
ZFIN|ZDB-GENE-061103-595	314	slc35a4 "solute carrier family	0.731	0.452	0.335	4.8e-13
UNIPROTKB|F1SLS8	421	SLC35A5 "Uncharacterized prote	0.706	0.325	0.300	7e-13

TAIR|locus:504955503 AT4G35335 [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 148/198 (74%), Positives = 157/198 (79%)

Query:     1 MEYRKIKXXXXXXXXXXXXXXXXXRGKPISVTNVASK-----SSELANWKRKSVVTLALT 55
             MEYRKIK                 +   ++ +N+A       SSE  NWKRK VVT ALT
Sbjct:     1 MEYRKIKDEDDHDVASDIESVKG-KSHTVASSNIAMATLGVGSSERINWKRKGVVTCALT 59

Query:    56 VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 115
             +LTSSQAILIVWSKRAGKYEYSVTTANFLV TLKCALSL AL RIW +EGVTDDNRLSTT
Sbjct:    60 ILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLSTT 119

Query:   116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQ 175
              DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSEIQ
Sbjct:   120 FDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSEIQ 179

Query:   176 WAAFILLCCGCTTAQLNS 193
             WA FILLCCGCTTAQLNS
Sbjct:   180 WAGFILLCCGCTTAQLNS 197

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2152955 AT5G41760 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 59/142 (41%), Positives = 86/142 (60%)

Query:    50 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD 109
             V + LT+LTSSQ IL   S+  G Y+Y   T  FL E  K  +S   L R       T  
Sbjct:     9 VAVLLTILTSSQGILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFLWREMRTSSSTT- 67

Query:   110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
             +R++T    V ++ IP+++YL+ N +Q+    YVD   YQI+ NL I++TG+L+R+ LK+
Sbjct:    68 SRITTDWKSVRLFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFLKR 127

Query:   170 KLSEIQWAAFILLCCGCTTAQL 191
             KLS++QW A  LL  G TT+Q+
Sbjct:   128 KLSKLQWMAIGLLAVGTTTSQV 149

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005456 "CMP-N-acetylneuraminate transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS;IDA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-030616-55 slc35a5 "solute carrier family 35, member A5" [Danio rerio (taxid:7955)]

 Score = 183 (69.5 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 47/146 (32%), Positives = 78/146 (53%)

Query:    46 RKSVVTLAL----TVLTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALSLAALARI 100
             R S  TLAL      L +S+ +L+ +S     KY+Y   + N + E +K    L    R+
Sbjct:    32 RSSAYTLALGLGFVTLGTSRILLLKFSGNEENKYDYLPASVNLMAEAIKLVFCLVMSVRV 91

Query:   101 WNHEGVT-DDNRLSTTLD--EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNI 156
                EG +  D   S+       + + +PA LY + NL+ +Y+ AY+  P   +L  N+ I
Sbjct:    92 IIREGRSFKDLGCSSGASFLSYLKWSVPAFLYFLDNLIIFYVIAYLQ-PAMAVLFSNIVI 150

Query:   157 ISTGVLYRIILKKKLSEIQWAAFILL 182
              +T  L+R++LK++LS +QWA+ I+L
Sbjct:   151 FTTAFLFRVVLKRRLSWVQWASLIIL 176

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1NTH1 SLC35A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 182 (69.1 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 48/133 (36%), Positives = 74/133 (55%)

Query:    57 LTSSQAILIVWSKRA-GKYEYSVTTANFLVETLKCALSLAALARIW--NHEGVTD--DNR 111
             L SS+ +L+ +S     KY+Y  TT N   E +K  L L  +  +W    EG  D     
Sbjct:    30 LGSSRILLMKYSANEDNKYDYLPTTVNICSEVVK--LFLCVVLALWVKKKEGCLDRPSGC 87

Query:   112 LS-TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKK 169
             LS       + + IPA LY + NL+ +Y+ +Y+  P   +L  N  II+T +L+RI+LK+
Sbjct:    88 LSWKNFCNSMKWSIPAFLYFLDNLIVFYVLSYLQ-PAMAVLFSNFVIITTALLFRIVLKR 146

Query:   170 KLSEIQWAAFILL 182
             KLS +QWA+ ++L
Sbjct:   147 KLSWVQWASLVIL 159

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H7BXF8 SLC35A5 "Probable UDP-sugar transporter protein SLC35A5" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 42/131 (32%), Positives = 72/131 (54%)

Query:    57 LTSSQAILIVWS-KRAGKYEYSVTTANFLVETLK---CAL-SLAALARIWNHEGVTDDNR 111
             L+SS+ +L+ +S     KY+Y  TT N   E +K   C L S   + +  +H+       
Sbjct:    29 LSSSRILLVKYSANEENKYDYLPTTVNVCSELVKLVFCVLVSFCVIKK--DHQSRNLKYA 86

Query:   112 LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKL 171
                   + + + IPA LY + NL+ +Y+ +Y+      I  N +II+T +L+RI+LK++L
Sbjct:    87 SWKEFSDFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRRL 146

Query:   172 SEIQWAAFILL 182
             + IQWA+ + L
Sbjct:   147 NWIQWASLLTL 157

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2081292 UTR6 "UDP-galactose transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 43/143 (30%), Positives = 75/143 (52%)

Query:    56 VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-T 114
             +L   Q +L+  SK  GK+ +S  + NFL E  K   ++  L     H+ V +   LS +
Sbjct:    51 MLVGLQPVLVYMSKVDGKFNFSPISVNFLTEIAKVIFAIVMLLIQARHQKVGEKPLLSVS 110

Query:   115 TLDEV----IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKK 170
             T  +     ++  +PA+LY + N L++ +  Y +    ++L NL ++   VL ++++K++
Sbjct:   111 TFVQAARNNVLLAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMVMKRR 170

Query:   171 LSEIQWAAFILLCCGCTTAQLNS 193
              S IQW A  LL  G +  QL S
Sbjct:   171 FSIIQWEALALLLIGISVNQLRS 193

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

MGI|MGI:1921352 Slc35a5 "solute carrier family 35, member A5" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 4.6e-13, P = 4.6e-13
 Identities = 43/130 (33%), Positives = 73/130 (56%)

Query:    57 LTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALS-LAALARIWNHEGVTDDNRLST 114
             L+SS+ +L+ +S     KY+Y  TT N   E +K  L  L +L  I   +  +   R ++
Sbjct:    41 LSSSRILLVKYSANEENKYDYLPTTVNVCSELMKLILCILVSLCVIKKEDHQSRHLRCTS 100

Query:   115 --TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 172
                    + + IPA LY + NL+ +Y+ +Y+      I  N +II+T +L+RI+LK+ L+
Sbjct:   101 WKEFSSFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRHLN 160

Query:   173 EIQWAAFILL 182
              IQWA+ ++L
Sbjct:   161 WIQWASLLIL 170

GO:0000139 "Golgi membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1564361 Slc35a5 "solute carrier family 35, member A5" [Rattus norvegicus (taxid:10116)]

 Score = 179 (68.1 bits), Expect = 4.6e-13, P = 4.6e-13
 Identities = 43/130 (33%), Positives = 71/130 (54%)

Query:    57 LTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 115
             L+SS+ +L+ +S     KY+Y  TT N   E +K  L +     I   E     +   T+
Sbjct:    42 LSSSRILLVKYSANEENKYDYLPTTVNVCSELMKLILCILVSLCIVKKEDHQSKHVRCTS 101

Query:   116 LDEV---IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 172
               E    + + IPA LY + NL+ +Y+ +Y+      I  N +II+T +L+RI+LK+ L+
Sbjct:   102 WKEFSGFLKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRHLN 161

Query:   173 EIQWAAFILL 182
              IQWA+ ++L
Sbjct:   162 WIQWASLLIL 171

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-061103-595 slc35a4 "solute carrier family 35, member A4" [Danio rerio (taxid:7955)]

 Score = 175 (66.7 bits), Expect = 4.8e-13, P = 4.8e-13
 Identities = 49/146 (33%), Positives = 72/146 (49%)

Query:    37 KSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAA 96
             +SS  A   R   + L L ++  S A L+   K   +  +S ++   L+ET K  +S A+
Sbjct:    11 ESSSPALRLRWLFLLLLLVLIYGSHAPLLSLCKTQAQIPFSASSCVLLIETSKLFISFAS 70

Query:    97 LARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI 156
             L       G     R+S ++     Y +PAVLY   N L  ++ AY+D   +Q+L NL I
Sbjct:    71 LLA----SGSVSTLRISISMTTASPYAVPAVLYAFNNHLVVFMQAYMDPSSFQVLSNLKI 126

Query:   157 ISTGVLYRIILKKKLSEIQWAAFILL 182
              ST +LY   L K+L   QW A  LL
Sbjct:   127 ASTALLYTSCLGKRLHRRQWFAMGLL 152

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|F1SLS8 SLC35A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 177 (67.4 bits), Expect = 7.0e-13, P = 7.0e-13
 Identities = 46/153 (30%), Positives = 78/153 (50%)

Query:    41 LANWKRKSVVTLALT--VLTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALSLAAL 97
             L +W       L      L+SS+ +L+ +S     KY+Y  TT N   E +K  L    L
Sbjct:    11 LCSWSTMYAFLLGAVFIALSSSRILLVKYSANEENKYDYLPTTVNMCSELVK--LVFCVL 68

Query:    98 ARIWNHEGVTDDNRLSTTLD--------EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQ 149
                W    +  ++R + TL          ++ + +PA LY + NL+ +Y+ +Y+      
Sbjct:    69 VSFWV---IKKEDRQNRTLRCGSWKKFFNIMKWSVPAFLYYLDNLIVFYVLSYLQPAMAV 125

Query:   150 ILKNLNIISTGVLYRIILKKKLSEIQWAAFILL 182
             I  N +II+T +L+RI+LK+ L+ IQWA+ ++L
Sbjct:   126 IFSNFSIITTALLFRIVLKRHLNWIQWASLLIL 158

GO:0016021 "integral to membrane" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4JN00	CSTR4_ARATH	No assigned EC number	0.78	0.9793	0.5397	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pm.C_scaffold_7000440 annotation not avaliable (352 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
pfam04142	238	pfam04142, Nuc_sug_transp, Nucleotide-sugar transp	2e-15

>gnl|CDD|217924 pfam04142, Nuc_sug_transp, Nucleotide-sugar transporter

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 26/71 (36%), Positives = 42/71 (59%)

Query: 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 183
           +PA +Y ++N L Y   + +DA  YQ+   L I++T +   ++L +KLS  QWA+ +LL 
Sbjct: 22  VPAFIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVLMLGRKLSWYQWASLLLLF 81

Query: 184 CGCTTAQLNSK 194
            G    QL+ K
Sbjct: 82  LGVAIVQLDQK 92

This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human SLC35A1 transports CMP-sialic acid, SLC35A2 transports UDP-galactose and SLC35A3 transports UDP-GlcNAc. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	100.0
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.91
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.73
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.07
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.94
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.89
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.83
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.39
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.35
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.35
PRK15430	296	putative chloramphenical resistance permease RarD;	98.28
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.14
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.07
PLN00411	358	nodulin MtN21 family protein; Provisional	97.91
COG2510	140	Predicted membrane protein [Function unknown]	97.82
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	97.81
PRK11272	292	putative DMT superfamily transporter inner membran	97.65
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.63
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.58
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.58
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.58
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.53
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.46
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.43
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.42
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.37
PRK11431	105	multidrug efflux system protein; Provisional	97.37
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.29
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	97.16
COG2076	106	EmrE Membrane transporters of cations and cationic	97.16
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.12
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.06
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.83
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.82
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.79
PRK11689	295	aromatic amino acid exporter; Provisional	96.69
KOG1581	327	consensus UDP-galactose transporter related protei	96.66
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.59
PLN00411	358	nodulin MtN21 family protein; Provisional	96.49
PRK11689	295	aromatic amino acid exporter; Provisional	96.48
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.48
PRK11272	292	putative DMT superfamily transporter inner membran	96.33
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.07
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.07
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	96.06
PRK10532	293	threonine and homoserine efflux system; Provisiona	96.04
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.01
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	95.72
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	95.6
PRK10532	293	threonine and homoserine efflux system; Provisiona	95.5
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	95.42
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	95.3
PRK15430	296	putative chloramphenical resistance permease RarD;	94.45
COG0697	292	RhaT Permeases of the drug/metabolite transporter	94.42
KOG1443	349	consensus Predicted integral membrane protein [Fun	93.85
KOG1580	337	consensus UDP-galactose transporter related protei	93.28
KOG1581	327	consensus UDP-galactose transporter related protei	92.2
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	89.96
COG2962	293	RarD Predicted permeases [General function predict	89.82
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	88.67
KOG4510	346	consensus Permease of the drug/metabolite transpor	88.67
KOG1580	337	consensus UDP-galactose transporter related protei	88.11
KOG2765	416	consensus Predicted membrane protein [Function unk	88.09
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	82.26

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.7e-37  Score=271.02  Aligned_cols=146  Identities=29%  Similarity=0.440  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhh----hCCCCCcccccccchhhc
Q 029357           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNH----EGVTDDNRLSTTLDEVIV  121 (194)
Q Consensus        46 ~k~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~----~~~~~~~~~~~~~~~~l~  121 (194)
                      .|+++++++++|+++.++++||++++++++|.++++||++|++|+++|+++.+++.++    .....+++....|+|.++
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            9999999999999999999999998889999999999999999999999998654322    000111233356789999


Q ss_pred             ccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (194)
Q Consensus       122 ~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql  191 (194)
                      ++|||++|++|||++|++++|+||+|||+++|+||++||+|++++|+||+|++||.|+++|++|+.++|+
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~  164 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL  164 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999994

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.91  E-value=1.2e-24  Score=185.35  Aligned_cols=80  Identities=33%  Similarity=0.626  Sum_probs=77.5

Q ss_pred             cccchhhcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccccC
Q 029357          114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (194)
Q Consensus       114 ~~~~~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~~  193 (194)
                      ..+|+.+++++||++|++||||+|++++++||++|||++|+||++||+|++++||||+|++||+|++++++|++++|.++
T Consensus        12 ~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~   91 (244)
T PF04142_consen   12 KSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS   91 (244)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999875

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.73  E-value=3.4e-17  Score=141.54  Aligned_cols=142  Identities=19%  Similarity=0.266  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhh---cCC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc---c-cccc-
Q 029357           48 SVVTLALTVLTSSQAILIVWSK---RAG----KYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDN---R-LSTT-  115 (194)
Q Consensus        48 ~~~l~~Lvl~~~~~~il~k~Sr---~~~----~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~---~-~~~~-  115 (194)
                      .++-+.++..++.++++.||..   .+|    ++|+.+++.+|++|++++.+-..+.   .+..+.....   . ..+. 
T Consensus         5 v~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir---~~sn~~g~~s~~~~ilsq~~   81 (372)
T KOG3912|consen    5 VFLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIR---LRSNGQGVSSDLDSILSQDS   81 (372)
T ss_pred             hhhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCCccccccccccccc
Confidence            3444567888999999999963   222    7899999999999999554433332   2222222111   1 1111 


Q ss_pred             -cchhhcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357          116 -LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (194)
Q Consensus       116 -~~~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~  192 (194)
                       +-+-..+..||+|+.....|+|++|.+..|+.|||+++.-|++||+|++.+|||++..+||+++...++|+++|...
T Consensus        82 ~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   82 SPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             CCCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence             22233455599999999999999999999999999999999999999999999999999999999999999998764

>TIGR00803 nst UDP-galactose transporter

Probab=99.07  E-value=1.2e-10  Score=96.78  Aligned_cols=71  Identities=25%  Similarity=0.326  Sum_probs=68.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357          121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (194)
Q Consensus       121 ~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~  192 (194)
                      ++++||.+|+.||++.++++.++++..+++. |.|+++||+++..+++|+++..||.++.++..|+..+|.+
T Consensus         1 ~isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~   71 (222)
T TIGR00803         1 KLSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMV   71 (222)
T ss_pred             CccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecC
Confidence            4789999999999999999999999999999 9999999999999999999999999999999999988865

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.94  E-value=2.6e-08  Score=88.88  Aligned_cols=76  Identities=20%  Similarity=0.221  Sum_probs=71.9

Q ss_pred             chhhcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357          117 DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (194)
Q Consensus       117 ~~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~  192 (194)
                      ++.+++.+.|++++..|.+...|+++.+.+..|++.+.-|+++.++|+++||+|+++.||++.++.++|++++-.+
T Consensus        77 ~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s  152 (334)
T PF06027_consen   77 RPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS  152 (334)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence            5567899999999999999999999999999999999999999999999999999999999999999999987553

Some of the sequences in this family are annotated as putative membrane proteins.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.89  E-value=4.1e-08  Score=85.49  Aligned_cols=125  Identities=18%  Similarity=0.204  Sum_probs=92.3

Q ss_pred             HhHHHHHHHH-hhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHHHHHH
Q 029357           58 TSSQAILIVW-SKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQ  136 (194)
Q Consensus        58 ~~~~~il~k~-Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iqN~L~  136 (194)
                      .++..++... .+..... ..+....++..+.-.+++......   .. ...     ........++++++++.+.+.+.
T Consensus        12 ~~~~g~~qE~i~~~~~~~-~~~~~lt~~q~~~~~~~~~~~~~~---~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~   81 (303)
T PF08449_consen   12 CCSYGILQEKIMTTPYGS-PFPLFLTFVQFAFNALFSFILLSL---FK-FPK-----SRKIPLKKYAILSFLFFLASVLS   81 (303)
T ss_pred             HHHHHHHHHHHHcCCCCC-cccHHHHHHHHHHHHHHHHHHHHh---cc-ccC-----CCcChHHHHHHHHHHHHHHHHHH
Confidence            3345555554 3322111 246667777777655555554422   11 000     11122456899999999999999


Q ss_pred             HHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357          137 YYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (194)
Q Consensus       137 f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~  192 (194)
                      +.+++++|.+++++++..|++.|.+++++++|||.++.||++.+++++|+++.-+.
T Consensus        82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~  137 (303)
T PF08449_consen   82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLS  137 (303)
T ss_pred             HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeec
Confidence            99999999999999999999999999999999999999999999999999987653

; GO: 0055085 transmembrane transport

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.83  E-value=2.6e-07  Score=82.38  Aligned_cols=128  Identities=13%  Similarity=0.020  Sum_probs=89.7

Q ss_pred             HHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHHHH
Q 029357           55 TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNL  134 (194)
Q Consensus        55 vl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iqN~  134 (194)
                      -..+....+..|+--+.  .+| |.+...+--++-.+++.++.    . .+....++.....++...+...++++...+.
T Consensus        58 y~~s~~~~~~nK~vl~~--~~~-P~~l~~~~~~~~~l~~~~~~----~-~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~  129 (350)
T PTZ00343         58 YALNVLYVVDNKLALNM--LPL-PWTISSLQLFVGWLFALLYW----A-TGFRKIPRIKSLKLFLKNFLPQGLCHLFVHF  129 (350)
T ss_pred             HHHHHHHHHHHHHHHHh--CCh-hHHHHHHHHHHHHHHHHHHH----H-hCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            44466666767764322  232 55555555555444433322    1 1111112221111234467778889998888


Q ss_pred             HHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcc
Q 029357          135 LQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (194)
Q Consensus       135 L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvq  190 (194)
                      ..++++++.+++.+|++.-+.-++|++++++++|+|+++++|.++++.++|+++.-
T Consensus       130 ~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        130 GAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            89999999999999999999999999999999999999999999999999999863

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.39  E-value=4.7e-06  Score=61.31  Aligned_cols=120  Identities=17%  Similarity=0.116  Sum_probs=87.3

Q ss_pred             hHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHH-HHHHHHHHH
Q 029357           59 SSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL-YLVKNLLQY  137 (194)
Q Consensus        59 ~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~l-Y~iqN~L~f  137 (194)
                      +...++.|..-+    ++++...++...+.-.+ .+.+...  .+...    ....++++.....+-+++ -.+.+.+.+
T Consensus         4 a~~~~~~k~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (126)
T PF00892_consen    4 AIYSVFSKKLLK----KISPLSITFWRFLIAGI-LLILLLI--LGRKP----FKNLSPRQWLWLLFLGLLGTALAYLLYF   72 (126)
T ss_pred             eeHHHHHHHHhc----cCCHHHHHHHHHHHHHH-HHHHHHh--hcccc----ccCCChhhhhhhhHhhccceehHHHHHH
Confidence            334455555331    26677777777777544 3333221  12111    111334455566777777 488999999


Q ss_pred             HHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357          138 YIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (194)
Q Consensus       138 ~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv  189 (194)
                      .++++.+++.-.++.++..+++++++++++|++++..||.++++.+.|+.++
T Consensus        73 ~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   73 YALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.35  E-value=1.6e-05  Score=68.74  Aligned_cols=127  Identities=12%  Similarity=0.150  Sum_probs=88.3

Q ss_pred             HHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHH
Q 029357           53 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK  132 (194)
Q Consensus        53 ~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iq  132 (194)
                      +--..+...++..|+--++  .+| |.+..++--..-.+++.+.    ++ .+.....+  .++++...+..-+++.++.
T Consensus         9 ~w~~~~~~~~~~NK~~l~~--~~~-P~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~--~~~~~~~~~~~~g~~~~~~   78 (302)
T TIGR00817         9 LWYFLNVYFNIYNKKLLNV--FPY-PYFKTLISLAVGSLYCLLS----WS-SGLPKRLK--ISSALLKLLLPVAIVHTIG   78 (302)
T ss_pred             HHHHHHHHHHHHHHHHHhh--CCh-hHHHHHHHHHHHHHHHHHH----HH-hCCCCCCC--CCHHHHHHHHHHHHHHHHH
Confidence            3455577777778875432  121 3334443333322222211    11 11111111  2345556677777888899


Q ss_pred             HHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357          133 NLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (194)
Q Consensus       133 N~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv  189 (194)
                      +.+.+.++.+.+++.+|++..+..++|++++++++|+|+++++|.++++.++|+++.
T Consensus        79 ~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        79 HVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999999999865

specificities overlap.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.35  E-value=2.3e-05  Score=60.69  Aligned_cols=135  Identities=12%  Similarity=0.160  Sum_probs=98.6

Q ss_pred             HHHHHhHHHHHHHHh-hc--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--ccccc-----ccchhhccc
Q 029357           54 LTVLTSSQAILIVWS-KR--AGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD--NRLST-----TLDEVIVYP  123 (194)
Q Consensus        54 Lvl~~~~~~il~k~S-r~--~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~--~~~~~-----~~~~~l~~~  123 (194)
                      =++..+...+++|.- ++  .+++..++-...+..-..-+++.+.....  .|+.....  .....     ..+....+.
T Consensus         8 s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (153)
T PF03151_consen    8 SSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFL--LEGPQLSSFFSEIFGEELSSDPNFIFLLI   85 (153)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhhHHHHhhhhhhcchHHHHHHHH
Confidence            355566666777653 32  23466777777777777766655554432  23221111  00111     223455678


Q ss_pred             chhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcc
Q 029357          124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (194)
Q Consensus       124 vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvq  190 (194)
                      +.+++..+.|...|..+.+..|.+++++.+.|.+.+-++++++++.+++..||.++.+.++|+.+-+
T Consensus        86 ~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   86 LSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            8899999999999999999999999999999999999999999999999999999999999997643

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.28  E-value=2.4e-05  Score=67.86  Aligned_cols=134  Identities=16%  Similarity=0.097  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhH
Q 029357           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  127 (194)
Q Consensus        48 ~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~  127 (194)
                      .+..++-++.++...+..|+..     ++.+...++.--.+=.++-+.+..  .++ +.....+...++++......-++
T Consensus        10 ~~~~l~a~~~wg~~~~~~k~~~-----~~~~~~~~~~R~~~a~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~   81 (296)
T PRK15430         10 VLLALAAYFIWGIAPAYFKLIY-----YVPADEILTHRVIWSFFFMVVLMS--ICR-QWSYLKTLIQTPQKIFMLAVSAV   81 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHHHH--HHc-cHHHHHHHHcCHHHHHHHHHHHH
Confidence            3444445667888888888742     255666665554442221111111  111 10000000113444433456678


Q ss_pred             HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357          128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (194)
Q Consensus       128 lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv  189 (194)
                      .+.+++.+.|.++++++++.=.++..+--+++++++++++|+|++++||.++++-++|+.++
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li  143 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQ  143 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999874

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.14  E-value=1.5e-05  Score=59.72  Aligned_cols=66  Identities=27%  Similarity=0.392  Sum_probs=59.7

Q ss_pred             hHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357          126 AVLY-LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (194)
Q Consensus       126 A~lY-~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~  192 (194)
                      +++. .+++.+.+.|+++.++ .-.++.++-.+++++++++++|+|++.++|.++.+.++|++++..+
T Consensus        41 g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~  107 (113)
T PF13536_consen   41 GLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWS  107 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence            4444 4889999999999995 7779999999999999999999999999999999999999998664

>TIGR00688 rarD rarD protein

Probab=98.07  E-value=0.00011  Score=61.88  Aligned_cols=133  Identities=15%  Similarity=0.065  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccc-cccch-hhcccchhH
Q 029357           50 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLDE-VIVYPIPAV  127 (194)
Q Consensus        50 ~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~-~~~~~-~l~~~vPA~  127 (194)
                      ...+-++.++...+..|+-.     ..++...++.=-++=.++-+.+..  .+++.....++.. ..+++ .....+-++
T Consensus         6 ~~i~a~~~wg~~~~~~k~~~-----~~~~~~i~~~R~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   78 (256)
T TIGR00688         6 VSLLASFLFGYMYYYSKLLK-----PLPATDILGHRMIWSFPFMLLSVT--LFRQWAALIERLKRIQKRPLILSLLLCGL   78 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHHHHHHHHH--HHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence            34445667888999999731     267777777666552211111111  1111100000111 11122 334677788


Q ss_pred             HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357          128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (194)
Q Consensus       128 lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv  189 (194)
                      +..+.+.+.|.++++++++.=.++..+--+++++++++++|+|++++||.++.+-++|++++
T Consensus        79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li  140 (256)
T TIGR00688        79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN  140 (256)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999865

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.91  E-value=0.00028  Score=63.54  Aligned_cols=132  Identities=14%  Similarity=0.077  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHH-HH-HhhhCCCCCcccccccchhhcccch
Q 029357           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALA-RI-WNHEGVTDDNRLSTTLDEVIVYPIP  125 (194)
Q Consensus        48 ~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~-~~-~~~~~~~~~~~~~~~~~~~l~~~vP  125 (194)
                      ++.+++.-+.+....++.|..-..|-.++..   .    ..-+.++.+++. +. ++++... .+  ..++++...+++-
T Consensus        15 ~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~---~----~~R~~iA~l~Ll~~~~~~~~~~~-~~--~~~~~~~~~l~l~   84 (358)
T PLN00411         15 LTAMLATETSVVGISTLFKVATSKGLNIYPF---L----GYSYLLASLLLLPSLFFTNRSRS-LP--PLSVSILSKIGLL   84 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCccHH---H----HHHHHHHHHHHHHHHHHHHHhcc-cC--cchHHHHHHHHHH
Confidence            4555555555666777777765555444432   2    334433332221 11 2222111 01  1235566667777


Q ss_pred             hHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHH------HhCcccHHHHHHHHHHHHhhhhc
Q 029357          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRII------LKKKLSEIQWAAFILLCCGCTTA  189 (194)
Q Consensus       126 A~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~------L~rkLs~~QW~aL~lL~~Gv~lv  189 (194)
                      +++-.+.+.+.|.++++++|+.=.++.++--++|+++++++      +|+|++..||+++++-++|+.++
T Consensus        85 g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll  154 (358)
T PLN00411         85 GFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVV  154 (358)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHH
Confidence            77666677799999999999999999999999999999999      69999999999999999998864

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.82  E-value=0.00028  Score=55.23  Aligned_cols=135  Identities=13%  Similarity=0.121  Sum_probs=87.5

Q ss_pred             HHHHHHH-HHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchh
Q 029357           48 SVVTLAL-TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  126 (194)
Q Consensus        48 ~~~l~~L-vl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA  126 (194)
                      ++..++| .+..+..++.-|.--.    .-++..+.++--++=.+++..+.+.   ..+.+....  -++|.++-+.+-+
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~----~vdp~~At~IRtiVi~~~l~~v~~~---~g~~~~~~~--~~~k~~lflilSG   74 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLE----GVDPDFATTIRTIVILIFLLIVLLV---TGNWQAGGE--IGPKSWLFLILSG   74 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc----ccCccHHHHHHHHHHHHHHHHHHHh---cCceecccc--cCcceehhhhHHH
Confidence            3444444 5566667777776421    1233333333333333344444321   111111111  2345555455555


Q ss_pred             HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (194)
Q Consensus       127 ~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql  191 (194)
                      +.=.+.-.++|.|+++=+++---=+..+....+++|++++||.++|..||+++.+.++|++++-+
T Consensus        75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            66677778889999999888777788889999999999999999999999999999999988754

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=0.00062  Score=60.28  Aligned_cols=137  Identities=16%  Similarity=0.233  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccc
Q 029357           45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI  124 (194)
Q Consensus        45 ~~k~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v  124 (194)
                      ....++-+.+++...+.+++.|+--+  +++|+......+.+-+=.++.+.+    .+.-+.-..+.  .+++...++-.
T Consensus        11 ~~~l~sa~~Y~~sS~lm~vvNK~vls--~y~f~~~l~l~~~Q~l~s~~~v~~----lk~~~lv~~~~--l~~~~~kk~~P   82 (314)
T KOG1444|consen   11 SSPLLSALFYCLSSILMTVVNKIVLS--SYNFPMGLLLMLLQSLASVLVVLV----LKRLGLVNFRP--LDLRTAKKWFP   82 (314)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHH----HHHhceeecCC--cChHHHHHHcc
Confidence            34466666788888888888888543  377877766665665532222222    23333322222  23566667777


Q ss_pred             hhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357          125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (194)
Q Consensus       125 PA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv  189 (194)
                      ++++|...=.----++.+++-++|-++++.-|+.||+.=+.++|++.+..-|.|+++..+|....
T Consensus        83 ~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~  147 (314)
T KOG1444|consen   83 VSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA  147 (314)
T ss_pred             HHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence            88888876666678899999999999999999999999999999999999999999999887654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.65  E-value=0.0025  Score=55.00  Aligned_cols=129  Identities=15%  Similarity=0.066  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhH
Q 029357           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  127 (194)
Q Consensus        48 ~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~  127 (194)
                      .+.+++.++.+++..+.+|+.-.+    .++...+++=-++-.++-+.+.   ..+ +.+.     ...++.....+-+.
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~----~~p~~~~~~R~~~a~l~ll~~~---~~~-~~~~-----~~~~~~~~~~~~g~   76 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVES----WPPLMMAGVRFLIAGILLLAFL---LLR-GHPL-----PTLRQWLNAALIGL   76 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHH---HHh-CCCC-----CcHHHHHHHHHHHH
Confidence            455667788999999999987532    4555555544333211111111   111 1110     11233333444444


Q ss_pred             H-HHHHHHHHHHHH-HhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcc
Q 029357          128 L-YLVKNLLQYYIF-AYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (194)
Q Consensus       128 l-Y~iqN~L~f~al-~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvq  190 (194)
                      + ..+.+.+.|.+. .+.+++.=.++..+--+++++++.+ +|+|++++||.++++-++|+.++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~  140 (292)
T PRK11272         77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN  140 (292)
T ss_pred             HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence            4 456788889998 9999998899999999999999985 799999999999999999998864

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.63  E-value=0.00025  Score=59.25  Aligned_cols=71  Identities=13%  Similarity=0.058  Sum_probs=63.6

Q ss_pred             hcccchhH-HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcc
Q 029357          120 IVYPIPAV-LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (194)
Q Consensus       120 l~~~vPA~-lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvq  190 (194)
                      ..+.+-+. ...+.+.+.|.++++++++.=.++.++.-++|++++.+++|+|++++||+++.+-++|+.++.
T Consensus        47 ~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~  118 (260)
T TIGR00950        47 LRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL  118 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence            34556664 568888999999999999999999999999999999999999999999999999999998864

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.58  E-value=0.0021  Score=55.94  Aligned_cols=143  Identities=16%  Similarity=0.141  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchh
Q 029357           47 KSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  126 (194)
Q Consensus        47 k~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA  126 (194)
                      ..+++++-.+..+.+.+..+....  +++-++.-.++.+.+.-+++.++........+..+..+-..+.+.......+=+
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~--~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s  232 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFK--KYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS  232 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH
Confidence            566666655666677676665321  233345777888888877766665532111111111011112233233344445


Q ss_pred             HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (194)
Q Consensus       127 ~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql  191 (194)
                      ++-++..+..|...+..+|.+..+..-+|-+.|-++|+++.+++++..||+++++.+.|..+-..
T Consensus       233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY  297 (303)
T ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence            55555556667778999999999999999999999999999999999999999999999987554

; GO: 0055085 transmembrane transport

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.58  E-value=0.00024  Score=63.43  Aligned_cols=69  Identities=16%  Similarity=0.228  Sum_probs=64.7

Q ss_pred             cchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357          123 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (194)
Q Consensus       123 ~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql  191 (194)
                      ..-++.|.++|...|.++.+++|.++.+...+|-+++.++++++++.+++..||++..+.++|+.+.++
T Consensus       280 ~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~  348 (350)
T PTZ00343        280 FFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL  348 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence            334789999999999999999999999999999999999999999999999999999999999988664

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.58  E-value=0.0052  Score=51.32  Aligned_cols=71  Identities=17%  Similarity=0.025  Sum_probs=61.0

Q ss_pred             chhhcccchhHH-HHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhh
Q 029357          117 DEVIVYPIPAVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCT  187 (194)
Q Consensus       117 ~~~l~~~vPA~l-Y~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~  187 (194)
                      ++......-+++ ..+...+.+.+++++++++-.++..+..+++++++++++|.+++..||.+..+.++|++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       189 LQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            333334445544 56788889999999999999999999999999999999999999999999999999974

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.53  E-value=0.00069  Score=51.24  Aligned_cols=65  Identities=11%  Similarity=0.084  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (194)
Q Consensus       127 ~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql  191 (194)
                      ++|.+...+.-.+++++|.+.=..+.++-.+.+++++++++|.+++.+||+++.+.++|++++..
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            67888888999999999988555555599999999999999999999999999999999988653

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.46  E-value=0.011  Score=49.32  Aligned_cols=72  Identities=19%  Similarity=0.238  Sum_probs=64.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357          121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYR-IILKKKLSEIQWAAFILLCCGCTTAQLN  192 (194)
Q Consensus       121 ~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~-l~L~rkLs~~QW~aL~lL~~Gv~lvql~  192 (194)
                      ....-.+...+.+.+.|.++++++++.-.++..+-.+.++++++ +++|+|+++.+|.++++.+.|+.++-.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~  144 (292)
T COG0697          72 LLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLG  144 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecC
Confidence            45666678888889999999999999999999999999999997 7779999999999999999999987553

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.43  E-value=0.001  Score=50.53  Aligned_cols=73  Identities=18%  Similarity=0.211  Sum_probs=65.5

Q ss_pred             hhcccchhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357          119 VIVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (194)
Q Consensus       119 ~l~~~vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql  191 (194)
                      .....+--++|.+.-.+.-.+++++|.+ .|-+-...-++.|++.+++++|.+++..||+++.+.+.|++..++
T Consensus        35 ~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lkl  108 (109)
T PRK10650         35 KIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIKL  108 (109)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            3344555788999999999999999966 899999999999999999999999999999999999999998765

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.42  E-value=0.0011  Score=51.07  Aligned_cols=70  Identities=11%  Similarity=0.224  Sum_probs=62.2

Q ss_pred             cchhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357          123 PIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (194)
Q Consensus       123 ~vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~  192 (194)
                      .+--++|.+.=.+...+++++|.+ .|-+....-++.+++.+++++|.+++..||+++.++++|++.+++.
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            445567777788888999999966 8888889999999999999999999999999999999999998774

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.37  E-value=0.0092  Score=51.68  Aligned_cols=123  Identities=14%  Similarity=0.072  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHH
Q 029357           49 VVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL  128 (194)
Q Consensus        49 ~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~l  128 (194)
                      +..++-++.+++..+.+|..-.    ..++...+++==.+    +..++....++.+        ..++.....++  ..
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~----~~~p~~~~~~R~~~----a~~~l~~~~~~~~--------~~~~~~~~~g~--~~   68 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLH----NMPPLMLAGLRFML----VAFPAIFFVARPK--------VPLNLLLGYGL--TI   68 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHh----cCCHHHHHHHHHHH----HHHHHHHHhcCCC--------CchHHHHHHHH--HH
Confidence            3445567889999999997542    24555555443332    2221111111111        11121111111  12


Q ss_pred             HHHHHHHHHHHHHh-CChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357          129 YLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (194)
Q Consensus       129 Y~iqN~L~f~al~~-lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv  189 (194)
                      +..+..+.|.++.+ ++++.-.++.++-.++|++++++++|+|++++||+++++-++|+.++
T Consensus        69 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll  130 (299)
T PRK11453         69 SFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVL  130 (299)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHh
Confidence            33455577888887 78888899999999999999999999999999999999999998865

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.37  E-value=0.0014  Score=49.33  Aligned_cols=72  Identities=13%  Similarity=0.217  Sum_probs=65.2

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccccC
Q 029357          122 YPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (194)
Q Consensus       122 ~~vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~~  193 (194)
                      ..+-.++|.+.=.+.-.+++.+|.+ .|-+-...-++.|++.+++++|.+++..||+++.+.+.|++..++.+
T Consensus        32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~~  104 (105)
T PRK11431         32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLST  104 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhccC
Confidence            4455778999999999999999966 89999999999999999999999999999999999999999987643

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.29  E-value=0.0017  Score=49.30  Aligned_cols=71  Identities=18%  Similarity=0.263  Sum_probs=64.0

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357          122 YPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (194)
Q Consensus       122 ~~vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~  192 (194)
                      ..+--++|.+.=.+...+++.+|.+ .|-+-...-++.|++.+++++|.+++..||+++.+.++|++..++.
T Consensus        33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3445678888888999999999966 8999999999999999999999999999999999999999998764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=97.16  E-value=0.00053  Score=59.26  Aligned_cols=68  Identities=10%  Similarity=0.090  Sum_probs=62.4

Q ss_pred             chhH-HHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357          124 IPAV-LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (194)
Q Consensus       124 vPA~-lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql  191 (194)
                      +.++ +|...|.+.|.++++++|.++.+...+|-++++++++++++.+++..||++..+..+|+.+.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       225 VAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            4444 7888888889999999999999999999999999999999999999999999999999988764

specificities overlap.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.16  E-value=0.0027  Score=48.02  Aligned_cols=73  Identities=19%  Similarity=0.245  Sum_probs=64.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccccC
Q 029357          121 VYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (194)
Q Consensus       121 ~~~vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~~  193 (194)
                      ...+=.+.|.+.=.+.=.+++++|-+ .|-+-.+.-++.|++..++++|.+++..||+++.++.+|++..++.+
T Consensus        32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s  105 (106)
T COG2076          32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS  105 (106)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence            34445678888888888999999955 89999999999999999999999999999999999999999887653

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.12  E-value=0.0022  Score=55.05  Aligned_cols=66  Identities=17%  Similarity=0.164  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcc
Q 029357          125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (194)
Q Consensus       125 PA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvq  190 (194)
                      =++..++.+...+.++++.|++.-.++..+..+++++++++++|++++.+||.++.+-++|+.++-
T Consensus        69 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~  134 (281)
T TIGR03340        69 SAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG  134 (281)
T ss_pred             HHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            345688889999999999999999999999999999999999999999999999999999998753

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.06  E-value=0.011  Score=51.50  Aligned_cols=74  Identities=15%  Similarity=0.241  Sum_probs=67.0

Q ss_pred             hhcccchhHHHHHHHHHHHHHHH-hCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHH----HHHHHHHHhhhhcccc
Q 029357          119 VIVYPIPAVLYLVKNLLQYYIFA-YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQW----AAFILLCCGCTTAQLN  192 (194)
Q Consensus       119 ~l~~~vPA~lY~iqN~L~f~al~-~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW----~aL~lL~~Gv~lvql~  192 (194)
                      .+...+..++..++|.+.+.+++ ++++++..++.|...+...+++++++|++.+++|+    ++.++...|+.+..+.
T Consensus       211 ~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       211 ILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            33445578889999999999999 99999999999999999999999999999999999    9999999999987653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.83  E-value=0.0026  Score=48.61  Aligned_cols=69  Identities=19%  Similarity=0.330  Sum_probs=63.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357          121 VYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (194)
Q Consensus       121 ~~~vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv  189 (194)
                      ++.+|=++|.....+.|+.+..-|-+ ++=+.+.+-.++|++..+++-++..++..|+++.+.++|+.++
T Consensus        43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            58999999999999999999999966 7778889999999999999999999999999999999999874

Many members are annotated as potential transmembrane proteins.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.82  E-value=0.0042  Score=53.90  Aligned_cols=58  Identities=19%  Similarity=0.213  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357          132 KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (194)
Q Consensus       132 qN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv  189 (194)
                      --.|..++++.+++.+|-++..+.-.+.|+-.+++|++++|..||.++.+.+++.+-+
T Consensus       223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~  280 (292)
T COG5006         223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS  280 (292)
T ss_pred             chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence            3467889999999999999999999999999999999999999999999998887743

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.79  E-value=0.0027  Score=55.89  Aligned_cols=68  Identities=19%  Similarity=0.288  Sum_probs=62.6

Q ss_pred             hcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357          120 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (194)
Q Consensus       120 l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv  189 (194)
                      |..+.  +++.+.+.+.++|+.+.|++.-|=+..+-+++.++++..+||+|+++.+|++..+.++|.+++
T Consensus        53 W~~G~--~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~li  120 (300)
T PF05653_consen   53 WWIGL--LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLI  120 (300)
T ss_pred             HHHHH--HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheee
Confidence            34443  688999999999999999999999999999999999999999999999999999999998864

>PRK11689 aromatic amino acid exporter; Provisional

Probab=96.69  E-value=0.06  Score=46.54  Aligned_cols=125  Identities=14%  Similarity=0.049  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccch-h
Q 029357           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP-A  126 (194)
Q Consensus        48 ~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vP-A  126 (194)
                      ++.+++-++.++++-+.+|..-.+    +.|....++-    +.++..++.. ....     ++..+.++   +..+. +
T Consensus         6 ~l~~l~a~~~Wg~~~~~~k~~~~~----~~P~~~~~~R----~~~a~l~l~~-~~~~-----~~~~~~~~---~~~~~~~   68 (295)
T PRK11689          6 TLIGLIAILLWSTMVGLIRGVSES----LGPVGGAAMI----YSVSGLLLLL-TVGF-----PRLRQFPK---RYLLAGG   68 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcc----CChHHHHHHH----HHHHHHHHHH-Hccc-----cccccccH---HHHHHHh
Confidence            445555677899999999986422    4444444443    2222222211 1111     01111111   11222 2


Q ss_pred             HHHHHHHHHHHHHHH----hCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357          127 VLYLVKNLLQYYIFA----YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (194)
Q Consensus       127 ~lY~iqN~L~f~al~----~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv  189 (194)
                      +.+++.+.+.|.++.    .+++..=.++..+--+++++++++++|+|++++||.++++-++|+.++
T Consensus        69 l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li  135 (295)
T PRK11689         69 LLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWV  135 (295)
T ss_pred             HHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhe
Confidence            345566666777764    467777788888999999999999999999999999999999999775

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.66  E-value=0.02  Score=50.81  Aligned_cols=110  Identities=16%  Similarity=0.278  Sum_probs=88.3

Q ss_pred             CCcc-hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHHHHHHHHHHHhCChHHHHHH
Q 029357           73 KYEY-SVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL  151 (194)
Q Consensus        73 ~~~y-~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl  151 (194)
                      +++| ++.-.+|..-++-++++.+++.+ ++++ .       ...+.+.+++.-|+-=.+..-++|-||.|++=+|+-+.
T Consensus        45 ~~rF~~~~fL~~~q~l~~~~~s~~~l~~-~k~~-~-------~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~La  115 (327)
T KOG1581|consen   45 GERFEHSLFLVFCQRLVALLVSYAMLKW-WKKE-L-------SGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLA  115 (327)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHhc-cccc-C-------CCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHH
Confidence            3444 66778888888888888666632 2221 1       11223456777788888899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357          152 KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (194)
Q Consensus       152 ~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql  191 (194)
                      ...|++-+.+...++.|||++..+++..++..+||.+.-+
T Consensus       116 KscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l  155 (327)
T KOG1581|consen  116 KSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSL  155 (327)
T ss_pred             HHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEE
Confidence            9999999999999999999999999999999999987544

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=96.59  E-value=0.018  Score=44.77  Aligned_cols=68  Identities=12%  Similarity=-0.011  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHH--HHHhCcccHHHHHHHHHHHHhhhhccccC
Q 029357          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYR--IILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (194)
Q Consensus       126 A~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~--l~L~rkLs~~QW~aL~lL~~Gv~lvql~~  193 (194)
                      -++|.+.-.+-..+++.+|.+.=.-+...-...++++++  +++|.++|..||+++.+.++|+.+++.++
T Consensus        55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            367888888889999999987433333444455556665  48999999999999999999999987653

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=96.49  E-value=0.16  Score=45.85  Aligned_cols=58  Identities=19%  Similarity=0.122  Sum_probs=54.3

Q ss_pred             HHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357          135 LQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (194)
Q Consensus       135 L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~  192 (194)
                      +.+.++++++|+.-.+...+.-++++++++++|+.+++..||++.++.++|+.+++..
T Consensus       272 lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        272 IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            5667889999999999999999999999999999999999999999999999998753

>PRK11689 aromatic amino acid exporter; Provisional

Probab=96.48  E-value=0.13  Score=44.51  Aligned_cols=65  Identities=11%  Similarity=0.021  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (194)
Q Consensus       127 ~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql  191 (194)
                      +.-.+...+.+.++++++|+.-.++.-+..+++.++.+++++.+++..||++.++.+.|+.+..+
T Consensus       223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            33455677889999999999999999999999999999999999999999999999999987654

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.48  E-value=0.0052  Score=54.70  Aligned_cols=69  Identities=14%  Similarity=0.247  Sum_probs=63.5

Q ss_pred             hcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhh
Q 029357          120 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (194)
Q Consensus       120 l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~l  188 (194)
                      ..+..=++++..+|...|..+.+..|.||||.++.|-...-..++++++++++..|-++..+-.+|+.+
T Consensus       236 ~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~  304 (316)
T KOG1441|consen  236 LILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFL  304 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHH
Confidence            334444599999999999999999999999999999999999999999999999999999999999986

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=96.33  E-value=0.013  Score=50.56  Aligned_cols=62  Identities=16%  Similarity=0.169  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357          130 LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (194)
Q Consensus       130 ~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql  191 (194)
                      .+...+.+.++++++++...++.-+.-+++++++++++|.+++..||++.++..+|+.+.+.
T Consensus       224 ~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        224 IIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            46677889999999999999999999999999999999999999999999999999988765

>TIGR00803 nst UDP-galactose transporter

Probab=96.07  E-value=0.0069  Score=50.14  Aligned_cols=67  Identities=18%  Similarity=0.135  Sum_probs=60.7

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhh
Q 029357          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (194)
Q Consensus       122 ~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~l  188 (194)
                      ..++.++-+++..+....+++.|+.+..+...++++.+++++.++++++++..||++..+.+.|+.+
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            4455677788888899999999999999999999999999999999999999999999999988753

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.07  E-value=0.0057  Score=54.44  Aligned_cols=70  Identities=20%  Similarity=0.283  Sum_probs=65.2

Q ss_pred             cccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcc
Q 029357          121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (194)
Q Consensus       121 ~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvq  190 (194)
                      ...-.|+.+++...+..+++++.+-+.+|+..-+..++|.++++++.+++.++.-|++|.....||++.-
T Consensus        85 ~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias  154 (316)
T KOG1441|consen   85 TLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIAS  154 (316)
T ss_pred             HHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEee
Confidence            4566789999999999999999999999999999999999999999999999999999999999988753

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=96.06  E-value=0.0098  Score=50.99  Aligned_cols=63  Identities=13%  Similarity=0.120  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhh
Q 029357          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (194)
Q Consensus       126 A~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~l  188 (194)
                      .+.-.+.+.+.+.+++++|++.-..+.++..+++.+++++++|.+++..||++..+.++|+.+
T Consensus       218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       218 GLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            345567788899999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=96.04  E-value=0.03  Score=48.35  Aligned_cols=60  Identities=17%  Similarity=0.198  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357          130 LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (194)
Q Consensus       130 ~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv  189 (194)
                      .++..+++.++++++|..-.++.-+..++++++++++++.+++..||++..+.++|++..
T Consensus       220 ~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~  279 (293)
T PRK10532        220 ALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGS  279 (293)
T ss_pred             HHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence            456668889999999999999999999999999999999999999999999999998875

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.01  E-value=0.033  Score=40.62  Aligned_cols=61  Identities=15%  Similarity=0.225  Sum_probs=40.0

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 029357          122 YPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILL  182 (194)
Q Consensus       122 ~~vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL  182 (194)
                      ....-.+|.+.-.+.-.+++++|.+ .|-+...+-++.+++.+++++|.++|..||+++.+.
T Consensus        32 ~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   32 TILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             --HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            3444458999999999999999966 889999999999999999999999999999999863

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=95.72  E-value=0.05  Score=47.06  Aligned_cols=62  Identities=13%  Similarity=0.089  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357          131 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (194)
Q Consensus       131 iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~  192 (194)
                      ++-.+.+.++++++|..-.++.-+.-++++++++++++.+++..||++..+.++|+.+.+.+
T Consensus       227 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        227 VGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            45557778889999999999999999999999999999999999999999999999887553

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=95.60  E-value=0.12  Score=44.44  Aligned_cols=125  Identities=18%  Similarity=0.241  Sum_probs=85.1

Q ss_pred             HHHhHHHHHHHHhh--cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHHH
Q 029357           56 VLTSSQAILIVWSK--RAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKN  133 (194)
Q Consensus        56 l~~~~~~il~k~Sr--~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iqN  133 (194)
                      +.++..+|++..+.  .-....|+-.-+++..+-+-+.+.+.++-+ .+--.        ...++..++-.|+++-++-=
T Consensus        12 lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~-l~~~~--------fR~t~aK~WfpiSfLLv~MI   82 (309)
T COG5070          12 LSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKF-LRLVE--------FRLTKAKKWFPISFLLVVMI   82 (309)
T ss_pred             HHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHH-HhHhh--------eehhhhhhhcCHHHHHHHHH
Confidence            34555566666542  223456777777777777766666666522 11111        11234445677777665533


Q ss_pred             HHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357          134 LLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (194)
Q Consensus       134 ~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv  189 (194)
                      .-.-=++++++.+.|.++.++-|+..|..=+.++|++.+.....+.+++++.-...
T Consensus        83 yt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va  138 (309)
T COG5070          83 YTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVA  138 (309)
T ss_pred             HhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHh
Confidence            33334678889999999999999999999999999999999999999988765543

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=95.50  E-value=0.5  Score=40.78  Aligned_cols=125  Identities=14%  Similarity=0.031  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccc
Q 029357           45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI  124 (194)
Q Consensus        45 ~~k~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v  124 (194)
                      .+.++.+++-++..+......|+.-.    .+.+...++.    .++++..++....++...    +  .++++.....+
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~----~~~~~~~~~~----R~~~a~l~l~~~~~~~~~----~--~~~~~~~~~~~   76 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFP----LVGAPGVTAL----RLALGTLILIAIFKPWRL----R--FAKEQRLPLLF   76 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHH----HcCHHHHHHH----HHHHHHHHHHHHHhHHhc----c--CCHHHHHHHHH
Confidence            44455555555556666677887532    1344433333    333333222111121111    1  11233333445


Q ss_pred             hhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357          125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (194)
Q Consensus       125 PA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv  189 (194)
                      -++++.+.|.+.|+++++++++.--++..+.-++++++.    +|+.++.+|+++  .++|+.++
T Consensus        77 ~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~~~~~i--~~~Gv~li  135 (293)
T PRK10532         77 YGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDFVWVVL--AVLGLWFL  135 (293)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHHHHHHH--HHHHHhee
Confidence            556788889999999999999987777766666666665    355666666554  46777653

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=95.42  E-value=0.31  Score=42.60  Aligned_cols=128  Identities=13%  Similarity=0.092  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccc
Q 029357           45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI  124 (194)
Q Consensus        45 ~~k~~~l~~Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v  124 (194)
                      ++..+.++.-++-+...+.+.|+...+       ...+++-|.+=+.++.+++.. ..++      ..  ..|..++=.+
T Consensus       137 ~kgi~~Ll~stigy~~Y~~~~~~~~~~-------~~~~~lPqaiGm~i~a~i~~~-~~~~------~~--~~k~~~~nil  200 (269)
T PF06800_consen  137 KKGILALLISTIGYWIYSVIPKAFHVS-------GWSAFLPQAIGMLIGAFIFNL-FSKK------PF--FEKKSWKNIL  200 (269)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCCC-------hhHhHHHHHHHHHHHHHHHhh-cccc------cc--cccchHHhhH
Confidence            333444444466666677766664422       233555666666666555532 1110      01  1123445578


Q ss_pred             hhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHH----HHHHHHHhhhh
Q 029357          125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWA----AFILLCCGCTT  188 (194)
Q Consensus       125 PA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~----aL~lL~~Gv~l  188 (194)
                      +.+++.+.|..++++.+.+-.++=-.++|+-++...+-..++||.+=+++||.    ++++.++|.++
T Consensus       201 ~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  201 TGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            89999999999999999999999899999999999999999999998888775    44455556543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=95.30  E-value=0.44  Score=41.34  Aligned_cols=68  Identities=13%  Similarity=0.253  Sum_probs=60.0

Q ss_pred             cchhHHHHHHHHHHHHHHHhCChHHHHHHhh-hHHHHHHHHHHHHHhCcccHHH----HHHHHHHHHhhhhcc
Q 029357          123 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKN-LNIISTGVLYRIILKKKLSEIQ----WAAFILLCCGCTTAQ  190 (194)
Q Consensus       123 ~vPA~lY~iqN~L~f~al~~lda~tfqvl~q-~KIl~TAlfs~l~L~rkLs~~Q----W~aL~lL~~Gv~lvq  190 (194)
                      .+-.+++.+.|..+|.+.+++..++=..+++ +-.+...+++.+++|.+.++++    +.++++.++|+.++-
T Consensus        63 ~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~  135 (290)
T TIGR00776        63 LLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS  135 (290)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence            3344569999999999999999998877777 8888999999999999999999    999999999998863

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=94.45  E-value=0.16  Score=43.95  Aligned_cols=61  Identities=8%  Similarity=-0.031  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357          131 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (194)
Q Consensus       131 iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql  191 (194)
                      +...+.+.+++++||+.-..+.-+..+++.++.+++++.+++..||.+..+..+|+.++..
T Consensus       225 i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        225 VPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            5677889999999999999999999999999999999999999999999999888777644

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=94.42  E-value=0.22  Score=41.28  Aligned_cols=74  Identities=23%  Similarity=0.247  Sum_probs=62.7

Q ss_pred             hhhcccchhHHHH-HHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357          118 EVIVYPIPAVLYL-VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (194)
Q Consensus       118 ~~l~~~vPA~lY~-iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql  191 (194)
                      +......-+++-. +.-.+.+.+++..++....+..-+.++.+.++.+++++.+.+..||.+..+.+.|+.+...
T Consensus       213 ~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~  287 (292)
T COG0697         213 AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL  287 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence            3334444444444 5788889999999999999999999999999999999999999999999999999988764

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=93.85  E-value=0.28  Score=43.85  Aligned_cols=142  Identities=15%  Similarity=0.096  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhc--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhc-
Q 029357           45 KRKSVVTLALTVLTSSQAILIVWSKR--AGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIV-  121 (194)
Q Consensus        45 ~~k~~~l~~Lvl~~~~~~il~k~Sr~--~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~-  121 (194)
                      .++.+...++++.+-+.+|..++-..  ..+.+ .|--++-+--++|+.++...... +++..  ...|...+|++.++ 
T Consensus        11 ~~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~f~-fPLf~ts~h~~v~flfa~~~~~l-~~~~~--~r~r~~~sw~~~Lr~   86 (349)
T KOG1443|consen   11 LMNRVLTLALVLLYYFLSIGLTFYFKWLTKNFH-FPLFVTSLHLAVKFLFAALSRRL-YQCSV--PRARVVLSWRDYLRR   86 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcC-CchHHHHHHHHHHHHHHHHHHHH-HhccC--CccccCCcHHHHHHH
Confidence            45555666677888888888887432  22333 34455556677888777665422 22222  22344467877764 


Q ss_pred             ccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcc
Q 029357          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (194)
Q Consensus       122 ~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvq  190 (194)
                      ++.-|+.=+..==|.-.++.+.+-+.|-|+...-|++.=+|+.++==.++++.=-...++...|+.+.-
T Consensus        87 ~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft  155 (349)
T KOG1443|consen   87 LAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFT  155 (349)
T ss_pred             hhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEE
Confidence            444455555555677888999999999999999999999999999666666665555666677776643

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.28  E-value=0.11  Score=44.99  Aligned_cols=66  Identities=14%  Similarity=0.179  Sum_probs=55.5

Q ss_pred             cchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhh
Q 029357          123 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (194)
Q Consensus       123 ~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~l  188 (194)
                      ..-|++-.+.....|.......|-+-.+..-++=++|-+.|+++++..+|.+||++-++.+.|...
T Consensus       245 ~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~  310 (337)
T KOG1580|consen  245 TLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA  310 (337)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence            344555556666778888888899999999999999999999999999999999999999888754

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.20  E-value=1.2  Score=39.73  Aligned_cols=114  Identities=16%  Similarity=0.163  Sum_probs=78.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHHHHHHHHHHHhCChHHHHHHh
Q 029357           73 KYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILK  152 (194)
Q Consensus        73 ~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~  152 (194)
                      ++.-++-..|+-..+.-.+.+..-+.  .......+..-....++-.+-+.+=+.+=++.-+..|.-++..-+-+|-+..
T Consensus       197 ~~k~s~~~mM~~vNLf~~i~~~~~li--~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~  274 (327)
T KOG1581|consen  197 KYKVSSLHMMFGVNLFSAILNGTYLI--LQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIM  274 (327)
T ss_pred             cCCccHhHHHHHHHHHHHHHHHHhhh--cCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHH
Confidence            34455666676666665444443321  1111110000011223222335566778888889999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhh
Q 029357          153 NLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (194)
Q Consensus       153 q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~l  188 (194)
                      -+|=+++=++|.++.++++|..||.+....+.|+..
T Consensus       275 ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  275 TTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            999999999999999999999999999988888764

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=89.96  E-value=0.085  Score=46.51  Aligned_cols=71  Identities=20%  Similarity=0.381  Sum_probs=59.2

Q ss_pred             cccchhHHHHHHHHHHHHHHH-hCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhccc
Q 029357          121 VYPIPAVLYLVKNLLQYYIFA-YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (194)
Q Consensus       121 ~~~vPA~lY~iqN~L~f~al~-~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql  191 (194)
                      .|++--.++.+-|..--+|+. +++-+..-+++..-.++|-+.+++++||+.|.+|..|.+++++|+++.-+
T Consensus        66 ~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl  137 (330)
T KOG1583|consen   66 DYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTL  137 (330)
T ss_pred             hhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEe
Confidence            355556666666666666665 46677888999999999999999999999999999999999999998755

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=89.82  E-value=1.3  Score=39.18  Aligned_cols=74  Identities=23%  Similarity=0.318  Sum_probs=50.2

Q ss_pred             cccccchhhcccchhHHHHHHHHHHHHHHHh---CChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhh
Q 029357          112 LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAY---VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (194)
Q Consensus       112 ~~~~~~~~l~~~vPA~lY~iqN~L~f~al~~---lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~l  188 (194)
                      ...+++......+-|++-..|=.+.-.|.+|   +|++   .=|=..-++..++..++||.|+|+.||+|+.+-.+||..
T Consensus        65 ~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaS---LGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~  141 (293)
T COG2962          65 LLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEAS---LGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLI  141 (293)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHH---hHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            3455666665566555555554444445554   4444   122234567778889999999999999999999999975

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=88.67  E-value=3  Score=36.45  Aligned_cols=110  Identities=13%  Similarity=0.183  Sum_probs=81.2

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHHHHHHHHHHHhCChH-HHHH
Q 029357           72 GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQI  150 (194)
Q Consensus        72 ~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iqN~L~f~al~~lda~-tfqv  150 (194)
                      |+.++++..-+-++-++   +++++...  .+.      ....+.+.++.-.+=.++.++.+..+|.+.+++--+ ++=+
T Consensus         9 gG~~~~Q~lG~t~Gali---~alv~~~~--~~p------~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPi   77 (269)
T PF06800_consen    9 GGKPANQILGTTIGALI---FALVVFLF--RQP------AFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPI   77 (269)
T ss_pred             CCcHHHHHHHHHHHHHH---HHHHHHHH--hCC------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeecc
Confidence            46677877666665554   55554432  121      111123445555666789999999999999999866 7777


Q ss_pred             HhhhHHHHHHHHHHHHHhCcccHHHHH----HHHHHHHhhhhcccc
Q 029357          151 LKNLNIISTGVLYRIILKKKLSEIQWA----AFILLCCGCTTAQLN  192 (194)
Q Consensus       151 l~q~KIl~TAlfs~l~L~rkLs~~QW~----aL~lL~~Gv~lvql~  192 (194)
                      -..+-++.|+++.+++++.--+..||.    |++++++|+.+.-.+
T Consensus        78 Stg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~  123 (269)
T PF06800_consen   78 STGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQ  123 (269)
T ss_pred             chhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccc
Confidence            778889999999999999999999997    888999999887554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=88.67  E-value=0.33  Score=42.82  Aligned_cols=64  Identities=13%  Similarity=0.201  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhc
Q 029357          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (194)
Q Consensus       126 A~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lv  189 (194)
                      .+.=...-.++|+|+.+|+-+-=.+.-=..-.+|++|++++||.+.|...=+...+-..||+++
T Consensus       104 g~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLI  167 (346)
T KOG4510|consen  104 GFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLI  167 (346)
T ss_pred             hhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEE
Confidence            3444555678999999998665555555667899999999999999998888888888998875

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=88.11  E-value=0.84  Score=39.72  Aligned_cols=73  Identities=15%  Similarity=0.196  Sum_probs=63.9

Q ss_pred             hcccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357          120 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (194)
Q Consensus       120 l~~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~  192 (194)
                      ..++--|+-|...-.-.--|++++|=+|-.+-...|-+-.-++.+++.+|+.+++++.+..+.+.||++.-+.
T Consensus        86 ~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK  158 (337)
T KOG1580|consen   86 KMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYK  158 (337)
T ss_pred             hHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcc
Confidence            3567777888888777788999999999777778999999999999999999999999999999999987553

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=88.09  E-value=0.93  Score=41.55  Aligned_cols=71  Identities=15%  Similarity=0.159  Sum_probs=65.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (194)
Q Consensus       122 ~~vPA~lY~iqN~L~f~al~~lda~tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~  192 (194)
                      ...=+.+..+.|.....||.+...+...+++.+.=++|=.+..++.+.|++..+-+++++-+.||+++-++
T Consensus       162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~  232 (416)
T KOG2765|consen  162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMG  232 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEec
Confidence            34557789999999999999999999999999999999999999999999999999999999999998765

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=82.26  E-value=21  Score=27.71  Aligned_cols=121  Identities=13%  Similarity=0.052  Sum_probs=65.5

Q ss_pred             HHHHHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcccccccchhhcccchhHHHHHHH
Q 029357           54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKN  133 (194)
Q Consensus        54 Lvl~~~~~~il~k~Sr~~~~~~y~~st~v~l~E~lKl~isl~l~~~~~~~~~~~~~~~~~~~~~~~l~~~vPA~lY~iqN  133 (194)
                      ..+|...+.-+-+...    .++..+..++..=.+=+.+..++.    ++.   ..++....+.-.+.=.+..++|..-|
T Consensus        13 i~~q~~~N~~L~~~~g----s~~~as~i~~~~G~i~~~i~~~~~----~~~---~~~~~~~~p~w~~lGG~lG~~~V~~~   81 (138)
T PF04657_consen   13 IALQAAFNGQLGKALG----SPLVASFISFGVGFILLLIILLIT----GRP---SLASLSSVPWWAYLGGLLGVFFVLSN   81 (138)
T ss_pred             HHHHHHHHHHHHHHhC----ccHHHHHHHHHHHHHHHHHHHHHh----ccc---ccchhccCChHHhccHHHHHHHHHHH
Confidence            4556666654444422    467788777777766332222221    221   11122111221223456666676666


Q ss_pred             HHHHHHHHhCChHHHHHHhhhHHHHHHHH-HHH----HHhCcccHHHHHHHHHHHHhhhh
Q 029357          134 LLQYYIFAYVDAPGYQILKNLNIISTGVL-YRI----ILKKKLSEIQWAAFILLCCGCTT  188 (194)
Q Consensus       134 ~L~f~al~~lda~tfqvl~q~KIl~TAlf-s~l----~L~rkLs~~QW~aL~lL~~Gv~l  188 (194)
                      +...   ..+.++...++.=.-=+.+++. =.+    .-+|+++..+..++.++.+|+.+
T Consensus        82 ~~~v---p~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   82 IILV---PRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHh---hhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            5544   6666665544432222333333 332    46789999999999999999864

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.8
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.67

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.80  E-value=0.00011  Score=54.21  Aligned_cols=67  Identities=19%  Similarity=0.315  Sum_probs=59.3

Q ss_pred             hHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357          126 AVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (194)
Q Consensus       126 A~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~  192 (194)
                      .++|.+.-.+...+++++|.+ .|-+...+-.+.|++++++++|.+++..||+++.+.++|+...+..
T Consensus        37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            356777778888899999988 5566589999999999999999999999999999999999998764

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.67  E-value=6.9e-05  Score=57.79  Aligned_cols=69  Identities=19%  Similarity=0.285  Sum_probs=51.2

Q ss_pred             chhHHHHHHHHHHHHHHHhCChH-HHHHHhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhhhhcccc
Q 029357          124 IPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (194)
Q Consensus       124 vPA~lY~iqN~L~f~al~~lda~-tfqvl~q~KIl~TAlfs~l~L~rkLs~~QW~aL~lL~~Gv~lvql~  192 (194)
                      +=.++|.+...+...+++.+|++ .|-+...+-.+.+++++++++|.+++..||+++.+.++|+.+++..
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            33467888889999999999998 7777689999999999999999999999999999999999988653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00