Citrus Sinensis ID: 029358

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
MHVQICSNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSEN
cHHHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHHHHccccccccEEEEcccccccccEEEEEcccccccccccccccHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHcccccHHHHHHHHHHHHHccc
ccEEEEHHHHHHccccccccccEEEcccHHHHHHHccHHHHHHHHcccccccccEEEEEEEcccEEEEEEEEcccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHcHcccccccccccccHHHHHHHHHHHHHHcccccccHHHccHHHccccccHHHHHHHHHHHHcccc
MHVQICSNLWRsfsedkkagftyLDSLWfdlyrkpsskakVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCnfggsfesktrtpcMLLLDslemsnpwrfepdIRKFVMDIYKAEDRPETKElisripllvpkvpqqrngeecGNFVLYFINLFvegapenfnledypyfmeknwftaeDLDCFCERLNSSEN
MHVQICSNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETkelisripllvpkvpqqrngEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSEN
MHVQICSNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSEN
***QICSNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCER******
MHVQICSNLWR****DKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNS***
MHVQICSNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSEN
*HVQICSNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLN****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHVQICSNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCERLNSSEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query194 2.2.26 [Sep-21-2011]
Q0WKV8 774 Probable ubiquitin-like-s no no 0.726 0.182 0.328 4e-16
Q8L7S0 931 Probable ubiquitin-like-s no no 0.757 0.157 0.267 3e-12
Q2PS26584 Ubiquitin-like-specific p no no 0.711 0.236 0.320 3e-11
Q8RWN0571 Ubiquitin-like-specific p no no 0.737 0.250 0.286 7e-09
O13769638 Ubiquitin-like-specific p yes no 0.603 0.183 0.302 7e-07
D3ZF421037 Sentrin-specific protease yes no 0.690 0.129 0.225 2e-06
Q9BQF61050 Sentrin-specific protease no no 0.690 0.127 0.225 3e-06
A7MBJ21047 Sentrin-specific protease yes no 0.690 0.127 0.225 3e-06
Q9EQE1588 Sentrin-specific protease no no 0.762 0.251 0.260 2e-05
Q94F30489 Ubiquitin-like-specific p no no 0.536 0.212 0.307 4e-05
>sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A OS=Arabidopsis thaliana GN=ULP2A PE=2 SV=2 Back     alignment and function desciption
 Score = 84.7 bits (208), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 11/152 (7%)

Query: 40  KVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFG----GSFESKTRTPCMLLLDSLEM 95
           +V  W K   +F K Y+ +PI C  HW+L+I+C+ G       E+  R PC+L LDS++ 
Sbjct: 375 RVQKWTKNVDLFEKDYIFIPINCSFHWSLVIICHPGELVPSHVENPQRVPCILHLDSIKG 434

Query: 96  SNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPLLVP---KVPQQRNGEECGNFVLYFI 152
           S+          ++ + +KA     T +  SR P +     ++PQQ N  +CG F+L+++
Sbjct: 435 SHKGGLINIFPSYLREEWKARHENTTNDS-SRAPNMQSISLELPQQENSFDCGLFLLHYL 493

Query: 153 NLFVEGAPENFN---LEDYPYFMEKNWFTAED 181
           +LFV  AP  FN   +     F+ +NWF A++
Sbjct: 494 DLFVAQAPAKFNPSLISRSANFLTRNWFPAKE 525
Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8
>sp|Q8L7S0|ULP2B_ARATH Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=2 SV=3 Back     alignment and function description
>sp|Q2PS26|ULP1D_ARATH Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana GN=ULP1D PE=1 SV=1 Back     alignment and function description
>sp|Q8RWN0|ULP1C_ARATH Ubiquitin-like-specific protease 1C OS=Arabidopsis thaliana GN=ULP1C PE=1 SV=1 Back     alignment and function description
>sp|O13769|ULP2_SCHPO Ubiquitin-like-specific protease 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ulp2 PE=1 SV=2 Back     alignment and function description
>sp|D3ZF42|SENP7_RAT Sentrin-specific protease 7 OS=Rattus norvegicus GN=Senp7 PE=2 SV=1 Back     alignment and function description
>sp|Q9BQF6|SENP7_HUMAN Sentrin-specific protease 7 OS=Homo sapiens GN=SENP7 PE=1 SV=4 Back     alignment and function description
>sp|A7MBJ2|SENP7_BOVIN Sentrin-specific protease 7 OS=Bos taurus GN=SENP7 PE=2 SV=1 Back     alignment and function description
>sp|Q9EQE1|SENP2_RAT Sentrin-specific protease 2 OS=Rattus norvegicus GN=Senp2 PE=1 SV=1 Back     alignment and function description
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query194
388499368284 unknown [Lotus japonicus] 0.943 0.644 0.732 7e-74
359491154 295 PREDICTED: uncharacterized protein LOC10 0.948 0.623 0.724 1e-73
224109184 298 predicted protein [Populus trichocarpa] 0.963 0.627 0.711 2e-72
255540373294 sentrin/sumo-specific protease, putative 0.953 0.629 0.718 3e-72
224136047186 predicted protein [Populus trichocarpa] 0.953 0.994 0.691 2e-69
356507339279 PREDICTED: uncharacterized protein LOC10 0.943 0.655 0.683 2e-69
307136120274 sentrin/sumo-specific protease [Cucumis 0.963 0.682 0.620 3e-62
449469608274 PREDICTED: probable ubiquitin-like-speci 0.963 0.682 0.620 3e-62
255547470284 sentrin/sumo-specific protease, putative 0.876 0.598 0.639 3e-59
113205141 440 Ulp1 protease family protein, putative [ 0.917 0.404 0.586 1e-56
>gi|388499368|gb|AFK37750.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
 Score =  281 bits (720), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 134/183 (73%), Positives = 151/183 (82%)

Query: 9   LWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNL 68
           +W SFSEDK+  F Y DSLWF LYR  SSK KVLTWIK++HIFSK YV VPIVCW HW+L
Sbjct: 100 IWNSFSEDKRKPFAYFDSLWFSLYRAASSKDKVLTWIKKEHIFSKAYVFVPIVCWGHWSL 159

Query: 69  LILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRI 128
           LI C+FG S +S TR+ CMLLLDSLEM NP R EPDIR+FV+DIYKA DRPETK LI +I
Sbjct: 160 LIFCHFGESLQSTTRSRCMLLLDSLEMVNPRRLEPDIRRFVVDIYKAWDRPETKNLIYQI 219

Query: 129 PLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDCFCER 188
           PLLVPKVPQQR+G ECGNFVLYFINLF+  APENF++  YPYFM+K+WFT ED D FCER
Sbjct: 220 PLLVPKVPQQRDGNECGNFVLYFINLFLRCAPENFSMGGYPYFMKKDWFTFEDFDRFCER 279

Query: 189 LNS 191
           L S
Sbjct: 280 LYS 282

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359491154|ref|XP_002262951.2| PREDICTED: uncharacterized protein LOC100251251 [Vitis vinifera] gi|297733618|emb|CBI14865.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224109184|ref|XP_002315114.1| predicted protein [Populus trichocarpa] gi|222864154|gb|EEF01285.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255540373|ref|XP_002511251.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223550366|gb|EEF51853.1| sentrin/sumo-specific protease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224136047|ref|XP_002322226.1| predicted protein [Populus trichocarpa] gi|222869222|gb|EEF06353.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356507339|ref|XP_003522425.1| PREDICTED: uncharacterized protein LOC100780621 [Glycine max] Back     alignment and taxonomy information
>gi|307136120|gb|ADN33966.1| sentrin/sumo-specific protease [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449469608|ref|XP_004152511.1| PREDICTED: probable ubiquitin-like-specific protease 2B-like [Cucumis sativus] gi|449487716|ref|XP_004157765.1| PREDICTED: probable ubiquitin-like-specific protease 2B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255547470|ref|XP_002514792.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223545843|gb|EEF47346.1| sentrin/sumo-specific protease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|113205141|gb|AAT40499.2| Ulp1 protease family protein, putative [Solanum demissum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query194
TAIR|locus:2101130298 AT3G48480 [Arabidopsis thalian 0.938 0.610 0.540 3.8e-53
DICTYBASE|DDB_G0293508 1035 DDB_G0293508 [Dictyostelium di 0.809 0.151 0.276 1.5e-12
TAIR|locus:2195598584 ULP1D "UB-like protease 1D" [A 0.690 0.229 0.328 2.8e-12
DICTYBASE|DDB_G0289557 778 DDB_G0289557 "peptidase C48 fa 0.845 0.210 0.273 1.5e-11
TAIR|locus:2194574571 OTS2 "OVERLY TOLERANT TO SALT 0.711 0.241 0.296 4.1e-11
UNIPROTKB|J3QT09985 SENP7 "Sentrin-specific protea 0.458 0.090 0.309 3.9e-09
MGI|MGI:19135651037 Senp7 "SUMO1/sentrin specific 0.458 0.085 0.309 4.4e-09
RGD|13055101037 Senp7 "SUMO1/sentrin specific 0.458 0.085 0.309 4.4e-09
UNIPROTKB|Q9BQF61050 SENP7 "Sentrin-specific protea 0.458 0.084 0.309 4.6e-09
UNIPROTKB|A7MBJ21047 SENP7 "Sentrin-specific protea 0.458 0.085 0.309 6.1e-09
TAIR|locus:2101130 AT3G48480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 101/187 (54%), Positives = 134/187 (71%)

Query:     8 NLWRSFSEDKKAGFTYLDSLWFDLYRKPSS--KAKVLTWIKRKHIFSKKYVLVPIVCWRH 65
             ++WR FS++KK  F YLD LWF +Y+  +   ++ V   +K K IFSKKYV +PIV W H
Sbjct:   109 DVWRGFSDEKKNSFVYLDCLWFSMYKSENHNIRSSVFDSVKTKQIFSKKYVFLPIVYWSH 168

Query:    66 WNLLILCNFGGSFESKTRTPCMLLLDSLEMSNP-WRFEPDIRKFVMDIYKAEDRPETKEL 124
             W LLI CNFG   +S  +T CML LDSL+ ++   R EPDIRKFV+DIY+AE R E   L
Sbjct:   169 WTLLIFCNFGEDLDSD-KT-CMLFLDSLQTTDSSQRLEPDIRKFVLDIYRAEGRTEDSSL 226

Query:   125 ISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLDC 184
             +  IP  VP VPQQ N  ECG+FVLY+I+ F+E APENFN+ED PYF++++WF+ +DL+ 
Sbjct:   227 VDEIPFYVPMVPQQTNDVECGSFVLYYIHRFIEDAPENFNVEDMPYFLKEDWFSHKDLEK 286

Query:   185 FCERLNS 191
             FC+ L+S
Sbjct:   287 FCDELHS 293
GO:0005634 "nucleus" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
GO:0008234 "cysteine-type peptidase activity" evidence=IEA
DICTYBASE|DDB_G0293508 DDB_G0293508 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2195598 ULP1D "UB-like protease 1D" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289557 DDB_G0289557 "peptidase C48 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2194574 OTS2 "OVERLY TOLERANT TO SALT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J3QT09 SENP7 "Sentrin-specific protease 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913565 Senp7 "SUMO1/sentrin specific peptidase 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305510 Senp7 "SUMO1/sentrin specific peptidase 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BQF6 SENP7 "Sentrin-specific protease 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A7MBJ2 SENP7 "Sentrin-specific protease 7" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.691
3rd Layer3.4.22.68LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
COG5160578 COG5160, ULP1, Protease, Ulp1 family [Posttranslat 6e-14
pfam02902216 pfam02902, Peptidase_C48, Ulp1 protease family, C- 1e-08
PLN03189490 PLN03189, PLN03189, Protease specific for SMALL UB 3e-04
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score = 68.8 bits (168), Expect = 6e-14
 Identities = 46/131 (35%), Positives = 62/131 (47%), Gaps = 15/131 (11%)

Query: 41  VLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWR 100
           V  W K+  IFSKKY+ +PI    HW L I+ N             +L  DSL  +    
Sbjct: 441 VRRWTKKTDIFSKKYIFIPINISYHWFLAIIDN---------PKKNILYFDSLANT-HDP 490

Query: 101 FEPDIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAP 160
               +R +++D YK       K+   +  +   KVPQQRNG +CG FV  FI  F+E  P
Sbjct: 491 VLEFLRSYLLDEYK---IQHDKDPQIK--MKHCKVPQQRNGSDCGVFVCMFIRYFLENPP 545

Query: 161 ENFNLEDYPYF 171
           E F+  D P  
Sbjct: 546 EQFSKNDRPRA 556

Length = 578
>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain Back     alignment and domain information
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 194
KOG0778511 consensus Protease, Ulp1 family [Posttranslational 100.0
PLN03189490 Protease specific for SMALL UBIQUITIN-RELATED MODI 100.0
COG5160578 ULP1 Protease, Ulp1 family [Posttranslational modi 100.0
PF02902216 Peptidase_C48: Ulp1 protease family, C-terminal ca 99.96
KOG3246223 consensus Sentrin-specific cysteine protease (Ulp1 99.82
KOG0779595 consensus Protease, Ulp1 family [Posttranslational 99.74
PF03290423 Peptidase_C57: Vaccinia virus I7 processing peptid 97.36
PRK11836403 deubiquitinase; Provisional 97.34
PRK14848317 deubiquitinase SseL; Provisional 97.13
PF03421177 YopJ: YopJ Serine/Threonine acetyltransferase; Int 93.12
PF00770183 Peptidase_C5: Adenovirus endoprotease; InterPro: I 86.67
PRK15371287 effector protein YopJ; Provisional 84.32
>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=5.2e-43  Score=307.76  Aligned_cols=158  Identities=25%  Similarity=0.447  Sum_probs=138.3

Q ss_pred             HHHHHHHhhcCcCCCCc-----EEEeccchhhhccCCCCchhHHHhhhccCCCccceEEEeccCCCcceeEEEecCCCCc
Q 029358            4 QICSNLWRSFSEDKKAG-----FTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSF   78 (194)
Q Consensus         4 ~~~~~~~~~l~~~~~~~-----~~~~nsfF~~~l~~~~~~~~v~rw~k~~~if~~d~i~iPin~~~HW~L~vi~~p~~~~   78 (194)
                      +|++.+...|.+-.+.+     +|+||||||++|.. .||++|+|||+++|||++|+||||||.+.||+|+||+.     
T Consensus       337 evINfYm~ll~ers~~~~~yp~~h~FnTFFy~kL~~-~gy~~VkRWTk~v~if~~d~i~vPIH~~vHW~l~vid~-----  410 (511)
T KOG0778|consen  337 EVINFYMELLKERSKKDSKYPKVHAFNTFFYTKLVG-RGYAGVKRWTKKVDIFDKDIIFVPIHLGVHWCLAVIDL-----  410 (511)
T ss_pred             HHHHHHHHHHHhhccccCCCceEEEEechhhhhhhh-cchHHHHhHhhccCccccceeEeeeecCceEEEEEEEc-----
Confidence            57888888887755444     99999999999987 69999999999999999999999999999999999987     


Q ss_pred             CcCCCCCeEEEeeCCCCCCCcchHHHHHHHHHHHHHHhCCCCCcccCCCccc-cCCCCCCCCCCCCcHHHHHHHHHHHhc
Q 029358           79 ESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIPL-LVPKVPQQRNGEECGNFVLYFINLFVE  157 (194)
Q Consensus        79 ~~~~~~~~i~~~DSl~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~P~Q~N~~DCGvfvl~~~e~~~~  157 (194)
                          ++++|.|||||++.....+ ..|.+||.+|+..+.+.  .++.+.|.. ...++|||.||+|||+|+|+|+++++.
T Consensus       411 ----r~k~i~y~DS~~~~~nr~~-~aL~~Yl~~E~~~k~~~--~~d~s~w~~~~~~~iP~Q~Ng~DCG~f~c~~~~~~s~  483 (511)
T KOG0778|consen  411 ----REKTIEYYDSLGGGPNRIC-DALAKYLQDESRDKSKK--DFDVSGWTIEFVQNIPQQRNGSDCGMFVCKYADYISR  483 (511)
T ss_pred             ----ccceEEEeeccCCCCcchH-HHHHHHHHHHHhhhhcC--CCCccchhhhhhhccccccCCCccceEEeeechhhcc
Confidence                5689999999997755444 79999999998766442  355567885 456899999999999999999999999


Q ss_pred             CCCCCcCCCCCcchhhh
Q 029358          158 GAPENFNLEDYPYFMEK  174 (194)
Q Consensus       158 ~~~~~f~~~d~~~~r~~  174 (194)
                      +.|++|+|.|||.||++
T Consensus       484 ~~p~~ftq~dmp~fR~~  500 (511)
T KOG0778|consen  484 DVPLTFTQQDMPYFRKK  500 (511)
T ss_pred             CCCcccChhhhHHHHHH
Confidence            99999999999999975

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information
>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification Back     alignment and domain information
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only] Back     alignment and domain information
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK11836 deubiquitinase; Provisional Back     alignment and domain information
>PRK14848 deubiquitinase SseL; Provisional Back     alignment and domain information
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp Back     alignment and domain information
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK15371 effector protein YopJ; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
3eay_A323 Crystal Structure Of The Human Senp7 Catalytic Doma 2e-07
2ckg_A225 The Structure Of Senp1 Sumo-2 Co-Complex Suggests A 4e-06
2xph_A238 Crystal Structure Of Human Senp1 With The Bound Cob 5e-06
2iyc_A226 Senp1 Native Structure Length = 226 5e-06
2xre_A230 Detection Of Cobalt In Previously Unassigned Human 5e-06
1tgz_A226 Structure Of Human Senp2 In Complex With Sumo-1 Len 7e-06
2g4d_A205 Crystal Structure Of Human Senp1 Mutant (C603s) In 5e-05
2iy0_A226 Senp1 (Mutant) Sumo1 Rangap Length = 226 5e-05
2io0_A232 Crystal Structure Of Human Senp2 In Complex With Pr 8e-05
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain Length = 323 Back     alignment and structure 
Iteration: 1

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 57/191 (29%)
Query: 40  KVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILC--------------------------N 73
           +V TW +  +IF+K Y+ VP+    HW L ++C                          N
Sbjct: 108 RVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQN 167
Query: 74  FGGSFESKTRT---------------------------PCMLLLDSLEMSNPWRFEPDIR 106
              + ++  RT                           PC+L+LDSL+ ++      ++R
Sbjct: 168 DNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLR 227
Query: 107 KFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLE 166
           +++   ++ + +   +   + +  L PKVP+Q N  +CG ++L ++  F +    NF L 
Sbjct: 228 EYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFEL- 286
Query: 167 DYPYFMEKNWF 177
             P  +EK WF
Sbjct: 287 --PIHLEK-WF 294
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225 Back     alignment and structure
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238 Back     alignment and structure
>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226 Back     alignment and structure
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230 Back     alignment and structure
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1 Length = 226 Back     alignment and structure
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205 Back     alignment and structure
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226 Back     alignment and structure
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 232 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 1e-21
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 2e-16
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 1e-14
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 3e-14
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 3e-12
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 9e-06
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238 Back     alignment and structure
 Score = 87.5 bits (216), Expect = 1e-21
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 9/167 (5%)

Query: 8   NLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWN 67
           N+    S++K     +  + +F    K +    V  W K+  +FS   +LVPI    HW 
Sbjct: 70  NMLMERSKEKGLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWC 129

Query: 68  LLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISR 127
           L ++               +   DS+   N       ++    +    + +         
Sbjct: 130 LAVVDFR---------KKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQL 180

Query: 128 IPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEK 174
                 ++PQQ NG +CG F   + +   +  P NF  +  PYF ++
Sbjct: 181 FSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKR 227
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226 Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221 Back     alignment and structure
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323 Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212 Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query194
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 100.0
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 100.0
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 100.0
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 100.0
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 100.0
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 99.96
4ekf_A204 Adenain; alpha and beta protein (A+B), hydrolase; 93.41
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.3e-46  Score=318.28  Aligned_cols=177  Identities=23%  Similarity=0.475  Sum_probs=148.5

Q ss_pred             hcCcCCCCcEEEeccchhhhccCCC---------------CchhHHHhhhccCCCccceEEEeccCCCcceeEEEecCCC
Q 029358           12 SFSEDKKAGFTYLDSLWFDLYRKPS---------------SKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGG   76 (194)
Q Consensus        12 ~l~~~~~~~~~~~nsfF~~~l~~~~---------------~~~~v~rw~k~~~if~~d~i~iPin~~~HW~L~vi~~p~~   76 (194)
                      +..++.+.++|+||||||++|....               +|++|+|||+++|||++|+||||||.+.||+|+|||+|+.
T Consensus        65 ~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~  144 (323)
T 3eay_A           65 KASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWL  144 (323)
T ss_dssp             TSCHHHHHTEEECCTHHHHHHSCC--------CCSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTC
T ss_pred             hccccccCcEEEEchHHHHHHHhcccccccccccchhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCc
Confidence            3344556899999999999998642               4889999999999999999999999999999999999964


Q ss_pred             Cc-----------------C------------------------------------cCCCCCeEEEeeCCCCCCCcchHH
Q 029358           77 SF-----------------E------------------------------------SKTRTPCMLLLDSLEMSNPWRFEP  103 (194)
Q Consensus        77 ~~-----------------~------------------------------------~~~~~~~i~~~DSl~~~~~~~~~~  103 (194)
                      ..                 |                                    ..++.+||++||||++....++.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~  224 (323)
T 3eay_A          145 EEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQ  224 (323)
T ss_dssp             SSCBCC-------------------------------------------------CCCCBCSEEEEECSSCCSSHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHH
Confidence            10                 0                                    013567999999999976566778


Q ss_pred             HHHHHHHHHHHHhCCCCCcccCCCccccCCCCCCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCcchhhhCCCCHHHHH
Q 029358          104 DIRKFVMDIYKAEDRPETKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEKNWFTAEDLD  183 (194)
Q Consensus       104 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~d~~~~r~~~wf~~~~i~  183 (194)
                      .|++||..||+.+++....+..+.|+...+.+|+|.|++|||||||+||++++.+++.+|++   |.. ..+||++++|.
T Consensus       225 ~Lr~YL~~E~~~k~~~~~~f~~~~~~~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~---~~~-~~~wf~~~~i~  300 (323)
T 3eay_A          225 NLREYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFEL---PIH-LEKWFPRHVIK  300 (323)
T ss_dssp             HHHHHHHHHHHHHHSSCCCCCTTTSCEECCBCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCS---SCB-CTTSSCHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCcCCCHhHceeccCCCCCcCCCCcHHHHHHHHHHHHHhCCcccccc---ccc-cccCCCHHHHH
Confidence            99999999999876544445556777677889999999999999999999999999999986   332 36899999999


Q ss_pred             HHHHHhhhc
Q 029358          184 CFCERLNSS  192 (194)
Q Consensus       184 ~~R~~i~~~  192 (194)
                      .+|++|++|
T Consensus       301 ~kR~ei~~L  309 (323)
T 3eay_A          301 TKREDIREL  309 (323)
T ss_dssp             THHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999976
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Back     alignment and structure
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 194
d2iy1a1225 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H 1e-22
d1th0a_226 d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H 1e-20
d1euva_221 d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake 2e-14
d2bkra1212 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN 6e-11
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (220), Expect = 1e-22
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 9/174 (5%)

Query: 1   MHVQICSNLWRSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPI 60
             +    N+    S++K     +  + +F    K +    V  W K+  +FS   +LVPI
Sbjct: 51  EIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPI 110

Query: 61  VCWRHWNLLILCNFGGSFESKTRTPCMLLLDSLEMSNPWRFEPDIRKFVMDIYKAEDRPE 120
               HW L ++           R   +   DS+   N       ++    +    + +  
Sbjct: 111 HLGVHWCLAVVDF---------RKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEF 161

Query: 121 TKELISRIPLLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLEDYPYFMEK 174
                        ++PQQ NG + G F   + +   +  P NF  +  PYF ++
Sbjct: 162 DTNGWQLFSKKSQEIPQQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKR 215
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226 Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query194
d1th0a_226 Sentrin-specific protease 2, SENP2 {Human (Homo sa 100.0
d2iy1a1225 Sentrin-specific protease 1 {Human (Homo sapiens) 99.98
d1euva_221 Ulp1 protease C-terminal domain {Baker's yeast (Sa 99.97
d2bkra1212 Sentrin-specific protease 8, SENP8 {Human (Homo sa 99.96
d1nlna_203 Human adenovirus 2 proteinase, adenain {Mastadenov 88.91
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=225.39  Aligned_cols=151  Identities=20%  Similarity=0.413  Sum_probs=124.2

Q ss_pred             hhcCcCCCCcEEEeccchhhhccCCCCchhHHHhhhccCCCccceEEEeccCCCcceeEEEecCCCCcCcCCCCCeEEEe
Q 029358           11 RSFSEDKKAGFTYLDSLWFDLYRKPSSKAKVLTWIKRKHIFSKKYVLVPIVCWRHWNLLILCNFGGSFESKTRTPCMLLL   90 (194)
Q Consensus        11 ~~l~~~~~~~~~~~nsfF~~~l~~~~~~~~v~rw~k~~~if~~d~i~iPin~~~HW~L~vi~~p~~~~~~~~~~~~i~~~   90 (194)
                      ....+....++++|||+|+++|.. .++..+++|+++.+++++++||||||.+.||+|+||+.+         .+++.+|
T Consensus        62 ~~~~~~~~~~~~~~~~~f~~~l~~-~~~~~~~~~~~~~~l~~~~~i~iPin~~~HW~L~vi~~~---------~~~i~~~  131 (226)
T d1th0a_          62 ERNKKQGYPALHVFSTFFYPKLKS-GGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLR---------KKCLKYL  131 (226)
T ss_dssp             HHHHHHTCCCEEECCTTHHHHHHH-HTGGGTGGGGTTCCGGGSSEEEEEEEETTEEEEEEEETT---------TTEEEEE
T ss_pred             HhhhhccCCceEEecHHHHHHHhh-ccHHHHHHHHhccCcccCCEEEEeEEcCCceEEEEEEec---------cceEEEe
Confidence            333445677899999999999977 689999999999999999999999999999999999984         4799999


Q ss_pred             eCCCCCCCcchHHHHHHHHHHHHHHhCCCCCcccCCCcc---ccCCCCCCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCC
Q 029358           91 DSLEMSNPWRFEPDIRKFVMDIYKAEDRPETKELISRIP---LLVPKVPQQRNGEECGNFVLYFINLFVEGAPENFNLED  167 (194)
Q Consensus        91 DSl~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~d  167 (194)
                      ||+++.+.. ....++.+|..++.........  ...|.   ..+..+|||.||+|||||||+||++++.+.+.+|++++
T Consensus       132 DSl~~~~~~-~~~~i~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~pqQ~N~~DCGvfvl~~~~~~~~~~~~~~tq~d  208 (226)
T d1th0a_         132 DSMGQKGHR-ICEILLQYLQDESKTKRNSDLN--LLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQ  208 (226)
T ss_dssp             CTTCCCCHH-HHHHHHHHHHHHHHHHTSCCCC--GGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGG
T ss_pred             ccccCCChH-HHHHHHHHHHHHHHHhhCCCcC--cccceeeeeccCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCcCHHH
Confidence            999988754 3457888998887765432211  12222   45678999999999999999999999999988898888


Q ss_pred             Ccchhhh
Q 029358          168 YPYFMEK  174 (194)
Q Consensus       168 ~~~~r~~  174 (194)
                      |+.+|++
T Consensus       209 i~~~R~~  215 (226)
T d1th0a_         209 MPLFRKK  215 (226)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888754
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]} Back     information, alignment and structure