Citrus Sinensis ID: 029375

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYLLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKYGGKKPSSSGGGSRGD
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
megiggdtasaaspvsqwgHDAWRLYQYYldkttphavYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYLLNLLIGflsplvdpeievadgpllptkgsdefkpfirrlpefkfWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYryipfnigkqkyggkkpsssgggsrgd
Flexible Loop (DISEMBL)
megiggdtasaaspvsqWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYLLNLLIGFLSPLVDPEIEVADGpllptkgsdefkpFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIpfnigkqkyggkkpsssgggsrgd
Low Complexity Region (SEG)
MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQgfyiisyglgiyllnlligflsPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIgkqkyggkkpsssgggsrgD
Disordered region (IsUnstruct)
***************SQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYLLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGK******************
Disordered Region (DISOPRED)
****************QWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYLLNLLIGFLSPLVD***********************RRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIG*******************
Disordered Region (DISEMBL)
***************SQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYLLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQ*****************
Disordered Region (DISPRO)
***********ASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYLLNLLIGFLSPLVDP*******PLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIG*******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYLLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKYGGKKPSSSGGGSRGD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
O48671	195	Protein RER1B OS=Arabidop	yes	no	1.0	0.994	0.810	4e-91
O48670	191	Protein RER1A OS=Arabidop	no	no	0.979	0.994	0.805	2e-88
Q9ZWI7	212	Protein RER1C OS=Arabidop	no	no	0.922	0.844	0.588	2e-59
Q9ZPV7	221	Protein RER1D OS=Arabidop	no	no	0.907	0.796	0.588	2e-57
A5PJ65	196	Protein RER1 OS=Bos tauru	yes	no	0.979	0.969	0.526	3e-53
Q5ZHM5	196	Protein RER1 OS=Gallus ga	yes	no	0.938	0.928	0.548	2e-52
Q5R5U4	196	Protein RER1 OS=Pongo abe	yes	no	0.979	0.969	0.515	3e-52
O15258	196	Protein RER1 OS=Homo sapi	yes	no	0.979	0.969	0.515	3e-52
Q498C8	196	Protein RER1 OS=Rattus no	yes	no	0.938	0.928	0.527	4e-52
Q9CQU3	196	Protein RER1 OS=Mus muscu	yes	no	0.938	0.928	0.527	4e-52

>sp|O48671|RER1B_ARATH Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2

 Score =  333 bits (855), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 158/195 (81%), Positives = 176/195 (90%), Gaps = 1/195 (0%)

Query: 1   MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQG 60
           MEG GGD+ S A+PV +  H+AWR+YQYYLDKTTPH+  RWIGTLV   IYCLRV+ + G
Sbjct: 1   MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHG 60

Query: 61  FYIISYGLGIYLLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSM 120
           FYIISYGLGIYLLNLLIGFLSPLVDPE+EV+DG  LPT+GSDEFKPFIRRLPEFKFWYSM
Sbjct: 61  FYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSM 120

Query: 121 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKYG 180
           TKAFCIAF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIK++YIPF+IGKQKY 
Sbjct: 121 TKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYS 180

Query: 181 GKKPS-SSGGGSRGD 194
           G+K S +SGGGSR D
Sbjct: 181 GRKSSANSGGGSRAD 195

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.
Arabidopsis thaliana (taxid: 3702)

>sp|O48670|RER1A_ARATH Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1

 Score =  324 bits (831), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 157/195 (80%), Positives = 173/195 (88%), Gaps = 5/195 (2%)

Query: 1   MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQG 60
           M+  GGD+ S A+PV Q  H+AWR+YQ+YLDKTTPHA YRWIGTLV+  IYCLRV+Y+QG
Sbjct: 1   MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQG 60

Query: 61  FYIISYGLGIYLLNLLIGFLSPLVDPEIE-VADGPLLPTKGSDEFKPFIRRLPEFKFWYS 119
           FYII+YGLGIYLLNLLIGFLSPLVDPE   V+DGP LPT+GSDEFKPFIRRLPEFKFWYS
Sbjct: 61  FYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYS 120

Query: 120 MTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKY 179
           MTKAFCIAF+MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKY+YIPF+ GKQKY
Sbjct: 121 MTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKY 180

Query: 180 GGKKPSSSGGGSRGD 194
           GG+    S  GSR D
Sbjct: 181 GGR----SSSGSRAD 191

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWI7|RER1C_ARATH Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1

 Score =  228 bits (581), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/180 (58%), Positives = 137/180 (76%), Gaps = 1/180 (0%)

Query: 12  ASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIY 71
           A  V++  H   +  Q+ LDKT PH +YRWI  L ++ IY +RV++V+GFYII+Y +GIY
Sbjct: 34  ADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIY 93

Query: 72  LLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMT 131
           LLNL+I FLSP  DPE  +  G  LPT+ SDE++PF+RRLPEFKFW S+ +AF I F+MT
Sbjct: 94  LLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMT 153

Query: 132 FFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKYGGKKPSSSGGGS 191
           FF VFDVPVFWPILL YW++LF LTMR+QI HMIKYRY+PF+ GK++Y GKKP+ +    
Sbjct: 154 FFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQY-GKKPAPTESSE 212

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPV7|RER1D_ARATH Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2

 Score =  221 bits (563), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/180 (58%), Positives = 131/180 (72%), Gaps = 4/180 (2%)

Query: 1   MEGIGGDTASA----ASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVF 56
           ME   G    A    ASP+++W  +  + +Q YLD++ P+ V RW+ TLV   IY  RV+
Sbjct: 1   MEDEPGSENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVY 60

Query: 57  YVQGFYIISYGLGIYLLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKF 116
            V G+++ISYGL  Y+LNLLIGFLSP VDPE+E  D   LP   SDE+KPF+RRLPEFKF
Sbjct: 61  SVYGYFVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKF 120

Query: 117 WYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGK 176
           WY+ TKAF +AFVMTFFS  DVPVFWPILLCYW+VL+ LTM+R I HM KYRY PF++ K
Sbjct: 121 WYAATKAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2

 Score =  207 bits (527), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 134/192 (69%), Gaps = 2/192 (1%)

Query: 2   EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGF 61
           + +G       S V ++     ++YQ +LDK+TPH   RW+ TL +  IY +RV+ +QG+
Sbjct: 5   DSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGW 64

Query: 62  YIISYGLGIYLLNLLIGFLSPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYS 119
           YI++Y LGIY LNL I FLSP VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++
Sbjct: 65  YIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHA 124

Query: 120 MTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKY 179
            TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF  GK+ Y
Sbjct: 125 ATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRTY 184

Query: 180 GGKKPSSSGGGS 191
            GK+ +     S
Sbjct: 185 KGKEDAGKAFAS 196

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Bos taurus (taxid: 9913)

>sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/184 (54%), Positives = 132/184 (71%), Gaps = 2/184 (1%)

Query: 2   EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGF 61
           + IG       S V ++     ++YQ +LDK+TP+   RWI TL +  IY +RV+ +QG+
Sbjct: 5   DSIGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGW 64

Query: 62  YIISYGLGIYLLNLLIGFLSPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYS 119
           YI++Y LGIY LNL I FLSP VDP +  +  DGP LPT+ ++EF+PFIRRLPEFKFW+S
Sbjct: 65  YIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHS 124

Query: 120 MTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKY 179
            TK   +A   TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF  GK+KY
Sbjct: 125 ATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRKY 184

Query: 180 GGKK 183
            GK+
Sbjct: 185 KGKE 188

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Gallus gallus (taxid: 9031)

>sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1

 Score =  204 bits (520), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/192 (51%), Positives = 135/192 (70%), Gaps = 2/192 (1%)

Query: 2   EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGF 61
           + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +QG+
Sbjct: 5   DSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGW 64

Query: 62  YIISYGLGIYLLNLLIGFLSPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYS 119
           YI++Y LGIY LNL I FLSP VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++
Sbjct: 65  YIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHA 124

Query: 120 MTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKY 179
            TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF  GK++Y
Sbjct: 125 ATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRY 184

Query: 180 GGKKPSSSGGGS 191
            GK+ +     S
Sbjct: 185 RGKEDAGKAFAS 196

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Pongo abelii (taxid: 9601)

>sp|O15258|RER1_HUMAN Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1

 Score =  204 bits (520), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/192 (51%), Positives = 135/192 (70%), Gaps = 2/192 (1%)

Query: 2   EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGF 61
           + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +QG+
Sbjct: 5   DSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGW 64

Query: 62  YIISYGLGIYLLNLLIGFLSPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYS 119
           YI++Y LGIY LNL I FLSP VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++
Sbjct: 65  YIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHA 124

Query: 120 MTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKY 179
            TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF  GK++Y
Sbjct: 125 ATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRY 184

Query: 180 GGKKPSSSGGGS 191
            GK+ +     S
Sbjct: 185 RGKEDAGKAFAS 196

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Homo sapiens (taxid: 9606)

>sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1

 Score =  204 bits (518), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 97/184 (52%), Positives = 133/184 (72%), Gaps = 2/184 (1%)

Query: 2   EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGF 61
           + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +QG+
Sbjct: 5   DSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGW 64

Query: 62  YIISYGLGIYLLNLLIGFLSPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYS 119
           YI++Y LGIY LNL I FLSP VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++
Sbjct: 65  YIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHA 124

Query: 120 MTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKY 179
            TK   +A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF  GK++Y
Sbjct: 125 ATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRY 184

Query: 180 GGKK 183
            GK+
Sbjct: 185 KGKE 188

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1

 Score =  204 bits (518), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 97/184 (52%), Positives = 133/184 (72%), Gaps = 2/184 (1%)

Query: 2   EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGF 61
           + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +QG+
Sbjct: 5   DSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGW 64

Query: 62  YIISYGLGIYLLNLLIGFLSPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYS 119
           YI++Y LGIY LNL I FLSP VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++
Sbjct: 65  YIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHA 124

Query: 120 MTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKY 179
            TK   +A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF  GK++Y
Sbjct: 125 ATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRY 184

Query: 180 GGKK 183
            GK+
Sbjct: 185 KGKE 188

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
449462214	194	PREDICTED: protein RER1A-like isoform 2	1.0	1.0	0.835	2e-92
297836674	193	hypothetical protein ARALYDRAFT_319835 [	0.989	0.994	0.835	2e-90
2865177	195	AtRer1B [Arabidopsis thaliana] gi|216179	1.0	0.994	0.810	6e-90
15226596	195	protein RER1B [Arabidopsis thaliana] gi|	1.0	0.994	0.810	2e-89
118483528	194	unknown [Populus trichocarpa]	0.922	0.922	0.854	3e-88
449462212	232	PREDICTED: protein RER1A-like isoform 1	0.912	0.762	0.864	3e-87
225428428	194	PREDICTED: protein RER1B [Vitis vinifera	1.0	1.0	0.783	9e-87
15234975	191	protein RER1A [Arabidopsis thaliana] gi|	0.979	0.994	0.805	9e-87
297797904	190	ATRER1A [Arabidopsis lyrata subsp. lyrat	0.974	0.994	0.805	3e-86
224080371	177	predicted protein [Populus trichocarpa]	0.912	1.0	0.853	1e-85

>gi|449462214|ref|XP_004148836.1| PREDICTED: protein RER1A-like isoform 2 [Cucumis sativus] gi|449507345|ref|XP_004163005.1| PREDICTED: protein RER1A-like isoform 2 [Cucumis sativus]

 Score =  343 bits (879), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 162/194 (83%), Positives = 179/194 (92%)

Query: 1   MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQG 60
           M+GIGG+ ASAA P+SQW HD  RLYQYYLDK TPHAVYRWIGTL I+AIY LRVFYVQG
Sbjct: 1   MDGIGGEAASAAGPLSQWQHDVSRLYQYYLDKITPHAVYRWIGTLFIVAIYALRVFYVQG 60

Query: 61  FYIISYGLGIYLLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSM 120
           FYI+SYGLGIY+LNLLIGFLSPLVDPE+EV+DGPLLPTKGSDEF+PFIRRLPEFKFWYS 
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFRPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKYG 180
           TKAFCIAFVMTFFS+FDVPVFWPILLCYWIVLFVLTMRRQI+HMIKY+Y+PF+ GKQK+G
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYLPFSFGKQKHG 180

Query: 181 GKKPSSSGGGSRGD 194
           GKKPS+S   +  D
Sbjct: 181 GKKPSASSVVTSDD 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836674|ref|XP_002886219.1| hypothetical protein ARALYDRAFT_319835 [Arabidopsis lyrata subsp. lyrata] gi|297332059|gb|EFH62478.1| hypothetical protein ARALYDRAFT_319835 [Arabidopsis lyrata subsp. lyrata]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 163/195 (83%), Positives = 178/195 (91%), Gaps = 3/195 (1%)

Query: 1   MEGIGGDTAS-AASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQ 59
           MEG+GGD AS A+SPV +  ++AWRLYQYYLDKTTPHAV RWIGTLVI  IYCLRVFYVQ
Sbjct: 1   MEGVGGDAASMASSPVQKRANEAWRLYQYYLDKTTPHAVNRWIGTLVIAGIYCLRVFYVQ 60

Query: 60  GFYIISYGLGIYLLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYS 119
           GFYIISY LGIY+LNLLIGFLSPLVDPE++ +DGP+LPTKGSDEFKPFIRRLPEFKFWYS
Sbjct: 61  GFYIISYALGIYVLNLLIGFLSPLVDPELDASDGPMLPTKGSDEFKPFIRRLPEFKFWYS 120

Query: 120 MTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKY 179
           MTKAFCIAFVMTFFS FD+PVFWPILL YWIVLFVLTMRRQIAHM+KY+YIPFN+GKQKY
Sbjct: 121 MTKAFCIAFVMTFFSFFDIPVFWPILLFYWIVLFVLTMRRQIAHMMKYKYIPFNLGKQKY 180

Query: 180 GGKKPSSSGGGSRGD 194
           GGKK  +SG  SR D
Sbjct: 181 GGKK--ASGSRSRAD 193

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2865177|dbj|BAA24804.1| AtRer1B [Arabidopsis thaliana] gi|21617987|gb|AAM67037.1| AtRer1B [Arabidopsis thaliana]

 Score =  335 bits (859), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 158/195 (81%), Positives = 177/195 (90%), Gaps = 1/195 (0%)

Query: 1   MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQG 60
           MEG GGD+ S A+PV +  H+AWR+YQYYLDKTTPH+  RWIGTLV+  IYCLRV+ + G
Sbjct: 1   MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVVFLIYCLRVYSIHG 60

Query: 61  FYIISYGLGIYLLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSM 120
           FYIISYGLGIYLLNLLIGFLSPLVDPE+EV+DG  LPT+GSDEFKPFIRRLPEFKFWYSM
Sbjct: 61  FYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSM 120

Query: 121 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKYG 180
           TKAFCIAF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIK++YIPF+IGKQKY 
Sbjct: 121 TKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYS 180

Query: 181 GKKPS-SSGGGSRGD 194
           G+K S +SGGGSR D
Sbjct: 181 GRKSSANSGGGSRAD 195

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226596|ref|NP_179754.1| protein RER1B [Arabidopsis thaliana] gi|21431803|sp|O48671.2|RER1B_ARATH RecName: Full=Protein RER1B; Short=AtRER1B gi|4567230|gb|AAD23645.1| AtRer1B [Arabidopsis thaliana] gi|16323081|gb|AAL15275.1| At2g21600/F2G1.13 [Arabidopsis thaliana] gi|21360413|gb|AAM47322.1| At2g21600/F2G1.13 [Arabidopsis thaliana] gi|330252107|gb|AEC07201.1| protein RER1B [Arabidopsis thaliana]

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 158/195 (81%), Positives = 176/195 (90%), Gaps = 1/195 (0%)

Query: 1   MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQG 60
           MEG GGD+ S A+PV +  H+AWR+YQYYLDKTTPH+  RWIGTLV   IYCLRV+ + G
Sbjct: 1   MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHG 60

Query: 61  FYIISYGLGIYLLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSM 120
           FYIISYGLGIYLLNLLIGFLSPLVDPE+EV+DG  LPT+GSDEFKPFIRRLPEFKFWYSM
Sbjct: 61  FYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSM 120

Query: 121 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKYG 180
           TKAFCIAF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIK++YIPF+IGKQKY 
Sbjct: 121 TKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYS 180

Query: 181 GKKPS-SSGGGSRGD 194
           G+K S +SGGGSR D
Sbjct: 181 GRKSSANSGGGSRAD 195

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483528|gb|ABK93662.1| unknown [Populus trichocarpa]

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 153/179 (85%), Positives = 171/179 (95%)

Query: 1   MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQG 60
           MEG+G + ASAASPV+QWG+D WR+YQYYLDK+TPH V+RWIGT V++AIYCLRV+YVQG
Sbjct: 1   MEGVGAEGASAASPVAQWGNDVWRMYQYYLDKSTPHTVHRWIGTFVVMAIYCLRVYYVQG 60

Query: 61  FYIISYGLGIYLLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSM 120
           FYII+YGLGIY+LNLLIGFLSPLVDPEI+ +DGPLLPTKGSDEFKPFIRRLPEFKFWYS 
Sbjct: 61  FYIIAYGLGIYILNLLIGFLSPLVDPEIDPSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKY 179
           TKAF IAFVMTFFS+FDVPVFWPILLCYWIVLFVLTMRRQIAHMIK++YIPFN+GKQKY
Sbjct: 121 TKAFVIAFVMTFFSMFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKFKYIPFNVGKQKY 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462212|ref|XP_004148835.1| PREDICTED: protein RER1A-like isoform 1 [Cucumis sativus] gi|449507341|ref|XP_004163004.1| PREDICTED: protein RER1A-like isoform 1 [Cucumis sativus]

 Score =  326 bits (835), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 153/177 (86%), Positives = 167/177 (94%)

Query: 1   MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQG 60
           M+GIGG+ ASAA P+SQW HD  RLYQYYLDK TPHAVYRWIGTL I+AIY LRVFYVQG
Sbjct: 1   MDGIGGEAASAAGPLSQWQHDVSRLYQYYLDKITPHAVYRWIGTLFIVAIYALRVFYVQG 60

Query: 61  FYIISYGLGIYLLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSM 120
           FYI+SYGLGIY+LNLLIGFLSPLVDPE+EV+DGPLLPTKGSDEF+PFIRRLPEFKFWYS 
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFRPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQ 177
           TKAFCIAFVMTFFS+FDVPVFWPILLCYWIVLFVLTMRRQI+HMIKY+Y+PF+ GKQ
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYLPFSFGKQ 177

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428428|ref|XP_002283905.1| PREDICTED: protein RER1B [Vitis vinifera] gi|297744409|emb|CBI37671.3| unnamed protein product [Vitis vinifera]

 Score =  324 bits (831), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 152/194 (78%), Positives = 171/194 (88%)

Query: 1   MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQG 60
           MEG GG   SA SPV QW  DA RL+QYYLDKTTPH VYRW+GTLV+ AIY LRV+YVQG
Sbjct: 1   MEGTGGGGPSAVSPVIQWKTDASRLFQYYLDKTTPHPVYRWVGTLVVAAIYALRVYYVQG 60

Query: 61  FYIISYGLGIYLLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSM 120
           FY++SYGLGIYLLNLLIGFLSPLVDPE+E ++  LLPTKGSDEFKPFIRRLPEFKFWYS+
Sbjct: 61  FYVVSYGLGIYLLNLLIGFLSPLVDPELETSNEALLPTKGSDEFKPFIRRLPEFKFWYSI 120

Query: 121 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKYG 180
           TKAFC+AFV+TFFS FDVPVFWPILLCYWIVLF+LTM+RQI HMIKY+Y+PF++GKQKYG
Sbjct: 121 TKAFCVAFVLTFFSAFDVPVFWPILLCYWIVLFILTMKRQIVHMIKYKYVPFSMGKQKYG 180

Query: 181 GKKPSSSGGGSRGD 194
           GKK  +S  GS  D
Sbjct: 181 GKKSFASSSGSNMD 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234975|ref|NP_195633.1| protein RER1A [Arabidopsis thaliana] gi|6225938|sp|O48670.1|RER1A_ARATH RecName: Full=Protein RER1A; Short=AtRER1A gi|2865175|dbj|BAA24803.1| AtRer1A [Arabidopsis thaliana] gi|4914434|emb|CAB43637.1| AtRer1A [Arabidopsis thaliana] gi|7270905|emb|CAB80585.1| AtRer1A [Arabidopsis thaliana] gi|14994255|gb|AAK73262.1| AtRer1A [Arabidopsis thaliana] gi|21554242|gb|AAM63317.1| AtRer1A [Arabidopsis thaliana] gi|24030322|gb|AAN41329.1| putative AtRer1A protein [Arabidopsis thaliana] gi|332661639|gb|AEE87039.1| protein RER1A [Arabidopsis thaliana]

 Score =  324 bits (831), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 157/195 (80%), Positives = 173/195 (88%), Gaps = 5/195 (2%)

Query: 1   MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQG 60
           M+  GGD+ S A+PV Q  H+AWR+YQ+YLDKTTPHA YRWIGTLV+  IYCLRV+Y+QG
Sbjct: 1   MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQG 60

Query: 61  FYIISYGLGIYLLNLLIGFLSPLVDPEIE-VADGPLLPTKGSDEFKPFIRRLPEFKFWYS 119
           FYII+YGLGIYLLNLLIGFLSPLVDPE   V+DGP LPT+GSDEFKPFIRRLPEFKFWYS
Sbjct: 61  FYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYS 120

Query: 120 MTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKY 179
           MTKAFCIAF+MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKY+YIPF+ GKQKY
Sbjct: 121 MTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKY 180

Query: 180 GGKKPSSSGGGSRGD 194
           GG+    S  GSR D
Sbjct: 181 GGR----SSSGSRAD 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797904|ref|XP_002866836.1| ATRER1A [Arabidopsis lyrata subsp. lyrata] gi|297312672|gb|EFH43095.1| ATRER1A [Arabidopsis lyrata subsp. lyrata]

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 157/195 (80%), Positives = 171/195 (87%), Gaps = 6/195 (3%)

Query: 1   MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQG 60
           ME  GGD+ S A+PV Q  H+AWR+YQ+YLDKTTPHA YRWIGTLV+  IYCLRV+Y+QG
Sbjct: 1   MEESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQG 60

Query: 61  FYIISYGLGIYLLNLLIGFLSPLVDPEIE-VADGPLLPTKGSDEFKPFIRRLPEFKFWYS 119
           FYII+YGLGIYLLNLLIGFLSPLVDPE   V+DGP LPT+GSDEFKPFIRRLPEFKFWYS
Sbjct: 61  FYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPTLPTRGSDEFKPFIRRLPEFKFWYS 120

Query: 120 MTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKY 179
           MTKAFCIAF+MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKY+YIPF+ GKQKY
Sbjct: 121 MTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKY 180

Query: 180 GGKKPSSSGGGSRGD 194
           G      S  GSR D
Sbjct: 181 G-----RSSSGSRAD 190

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080371|ref|XP_002306115.1| predicted protein [Populus trichocarpa] gi|222849079|gb|EEE86626.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 151/177 (85%), Positives = 166/177 (93%)

Query: 1   MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQG 60
           MEG+G + AS ASPV+QWGHD WR+YQYYLDK+TPH VYRWIGTLV +AIYCLRV Y+QG
Sbjct: 1   MEGVGAEGASVASPVAQWGHDVWRIYQYYLDKSTPHTVYRWIGTLVAVAIYCLRVCYIQG 60

Query: 61  FYIISYGLGIYLLNLLIGFLSPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSM 120
           FYII+YGLGIY+LNLLIGFLSPLVDPEI+ +DGP LPTKGSDEFKPFIRRLPEFKFWYS 
Sbjct: 61  FYIIAYGLGIYILNLLIGFLSPLVDPEIDPSDGPSLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQ 177
           TKAF IAFVMTFFS+FDVPVFWPILLCYWIVLFVLTMRRQIAHMIKY+YIPF++GKQ
Sbjct: 121 TKAFVIAFVMTFFSMFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSLGKQ 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2136373	191	ATRER1A "AT4G39220" [Arabidops	0.891	0.905	0.712	2.2e-66
TAIR|locus:2049354	195	RER1B "AT2G21600" [Arabidopsis	0.896	0.892	0.695	1.5e-65
TAIR|locus:2062185	221	AT2G18240 "AT2G18240" [Arabido	0.860	0.755	0.517	8.1e-44
TAIR|locus:2058583	212	ATRER1C1 "AT2G23310" [Arabidop	0.860	0.787	0.502	1.3e-43
ASPGD|ASPL0000006680	189	AN5915 [Emericella nidulans (t	0.773	0.793	0.531	2e-40
UNIPROTKB|A5PJ65	196	RER1 "Protein RER1" [Bos tauru	0.881	0.872	0.462	7.8e-39
ZFIN|ZDB-GENE-040426-1494	250	rer1 "RER1 retention in endopl	0.768	0.596	0.503	7.8e-39
MGI|MGI:1915080	196	Rer1 "RER1 retention in endopl	0.881	0.872	0.445	4.3e-38
RGD|1306324	196	Rer1 "RER1 retention in endopl	0.881	0.872	0.445	4.3e-38
WB|WBGene00009783	191	rer-1 [Caenorhabditis elegans	0.819	0.832	0.469	4.3e-38

TAIR|locus:2136373 ATRER1A "AT4G39220" [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 124/174 (71%), Positives = 138/174 (79%)

Query:     1 MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQX 60
             M+  GGD+ S A+PV Q  H+AWR+YQ+YLDKTTPHA YRWIGTLV+  IYCLRV+Y+Q 
Sbjct:     1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQG 60

Query:    61 XXXXXXXXXXXXXXXXXXXXXPLVDPEIE-VADGPLLPTKGSDEFKPFIRRLPEFKFWYS 119
                                  PLVDPE   V+DGP LPT+GSDEFKPFIRRLPEFKFWYS
Sbjct:    61 FYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYS 120

Query:   120 MTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 173
             MTKAFCIAF+MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKY+YIPF+
Sbjct:   121 MTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2049354 RER1B "AT2G21600" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 121/174 (69%), Positives = 137/174 (78%)

Query:     1 MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQX 60
             MEG GGD+ S A+PV +  H+AWR+YQYYLDKTTPH+  RWIGTLV   IYCLRV+ +  
Sbjct:     1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHG 60

Query:    61 XXXXXXXXXXXXXXXXXXXXXPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSM 120
                                  PLVDPE+EV+DG  LPT+GSDEFKPFIRRLPEFKFWYSM
Sbjct:    61 FYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSM 120

Query:   121 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 174
             TKAFCIAF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIK++YIPF+I
Sbjct:   121 TKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSI 174

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2062185 AT2G18240 "AT2G18240" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 87/168 (51%), Positives = 108/168 (64%)

Query:     7 DTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXX 66
             DT   ASP+++W  +  + +Q YLD++ P+ V RW+ TLV   IY  RV+ V        
Sbjct:    12 DTI-VASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISY 70

Query:    67 XXXXXXXXXXXXXXXPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCI 126
                            P VDPE+E  D   LP   SDE+KPF+RRLPEFKFWY+ TKAF +
Sbjct:    71 GLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAATKAFVV 130

Query:   127 AFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 174
             AFVMTFFS  DVPVFWPILLCYW+VL+ LTM+R I HM KYRY PF++
Sbjct:   131 AFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDV 178

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA;ISS

TAIR|locus:2058583 ATRER1C1 "AT2G23310" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 84/167 (50%), Positives = 110/167 (65%)

Query:     7 DTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXX 66
             D++S A  V++  H   +  Q+ LDKT PH +YRWI  L ++ IY +RV++V+       
Sbjct:    29 DSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITY 88

Query:    67 XXXXXXXXXXXXXXXPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCI 126
                            P  DPE  +  G  LPT+ SDE++PF+RRLPEFKFW S+ +AF I
Sbjct:    89 AIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFII 148

Query:   127 AFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 173
              F+MTFF VFDVPVFWPILL YW++LF LTMR+QI HMIKYRY+PF+
Sbjct:   149 GFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=NAS

GO:0045185 "maintenance of protein location" evidence=IGI

ASPGD|ASPL0000006680 AN5915 [Emericella nidulans (taxid:162425)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 84/158 (53%), Positives = 101/158 (63%)

Query:    24 RLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPL 83
             R YQ YLD +TP   YRWIGT V+L I+ LR+   Q                      P 
Sbjct:    23 RQYQTYLDASTPFTAYRWIGTAVLLFIFFLRIILAQGWYIVAYTVGIYLLNLFLLFLQPK 82

Query:    84 VDPEIE----VADG----PLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSV 135
              DP +     + DG    P LPTK  DEF+PFIRRLPEFKFW+S T+A  I F+ T+FSV
Sbjct:    83 FDPSLTQDEGLEDGDAGAPSLPTKQDDEFRPFIRRLPEFKFWHSATRALAIGFLCTWFSV 142

Query:   136 FDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 173
             FD+PVFWP+L+ YWI+LFVLTMRRQI HMIKYRY+PF+
Sbjct:   143 FDIPVFWPVLVVYWILLFVLTMRRQIQHMIKYRYVPFS 180

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0030134 "ER to Golgi transport vesicle" evidence=IEA

GO:0030137 "COPI-coated vesicle" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006621 "protein retention in ER lumen" evidence=IEA

UNIPROTKB|A5PJ65 RER1 "Protein RER1" [Bos taurus (taxid:9913)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 80/173 (46%), Positives = 107/173 (61%)

Query:     2 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXX 61
             + +G       S V ++     ++YQ +LDK+TPH   RW+ TL +  IY +RV+ +Q  
Sbjct:     5 DSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGW 64

Query:    62 XXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYS 119
                                 P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++
Sbjct:    65 YIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHA 124

Query:   120 MTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 172
              TK   +A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:   125 ATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

ZFIN|ZDB-GENE-040426-1494 rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 76/151 (50%), Positives = 101/151 (66%)

Query:    24 RLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPL 83
             ++YQ +LDK+TP +  RW  TL++ AIY +RV+ +Q                      P 
Sbjct:    81 QIYQSWLDKSTPFSAVRWASTLILTAIYMIRVYILQGWYIVTYALGIYHLNLFIAFLSPK 140

Query:    84 VDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVF 141
             VDP +  +  +GP LPTK ++EF+PFIRRLPEFKFW+S TK   IA + TFF  F+VPVF
Sbjct:   141 VDPSLLDDPDEGPALPTKQNEEFRPFIRRLPEFKFWHSATKGIVIAMICTFFDAFNVPVF 200

Query:   142 WPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 172
             WPIL+ Y+I+LF +TM+RQI HMIKYRY+PF
Sbjct:   201 WPILVMYFIMLFCITMKRQIKHMIKYRYLPF 231

GO:0016021 "integral to membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1915080 Rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 77/173 (44%), Positives = 107/173 (61%)

Query:     2 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXX 61
             + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q  
Sbjct:     5 DSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGW 64

Query:    62 XXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYS 119
                                 P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++
Sbjct:    65 YIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHA 124

Query:   120 MTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 172
              TK   +A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:   125 ATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=ISO

RGD|1306324 Rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 77/173 (44%), Positives = 107/173 (61%)

Query:     2 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXX 61
             + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q  
Sbjct:     5 DSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGW 64

Query:    62 XXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYS 119
                                 P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++
Sbjct:    65 YIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHA 124

Query:   120 MTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 172
              TK   +A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:   125 ATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA;ISO

GO:0030173 "integral to Golgi membrane" evidence=IEA;ISO

WB|WBGene00009783 rer-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 76/162 (46%), Positives = 99/162 (61%)

Query:    16 SQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXX 75
             S++ H     YQYYLD+ TPH  +RW+  L+ L  +  R+  +Q                
Sbjct:    13 SRFFHSLEVKYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNL 72

Query:    76 XXXXXXPLVDPEIEVAD---GPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTF 132
                   P +DP +E  D   GP+LP+K +DEF+PF+RRLPEFKFW+S  KA  IA   TF
Sbjct:    73 FLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIAITCTF 132

Query:   133 FSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 174
             F  FDVPVFWPIL+ Y+ +L  LT++RQI HMIKYRYIPF +
Sbjct:   133 FEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPFTV 174

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CQU3	RER1_MOUSE	No assigned EC number	0.5271	0.9381	0.9285	yes	no
Q10358	RER1_SCHPO	No assigned EC number	0.5028	0.8608	0.9076	yes	no
Q5ZHM5	RER1_CHICK	No assigned EC number	0.5489	0.9381	0.9285	yes	no
Q5R5U4	RER1_PONAB	No assigned EC number	0.5156	0.9793	0.9693	yes	no
Q54D10	RER1_DICDI	No assigned EC number	0.4939	0.8247	0.8510	yes	no
P52879	RER1_CAEEL	No assigned EC number	0.5344	0.8814	0.8952	yes	no
O15258	RER1_HUMAN	No assigned EC number	0.5156	0.9793	0.9693	yes	no
A5PJ65	RER1_BOVIN	No assigned EC number	0.5260	0.9793	0.9693	yes	no
O48670	RER1A_ARATH	No assigned EC number	0.8051	0.9793	0.9947	no	no
O48671	RER1B_ARATH	No assigned EC number	0.8102	1.0	0.9948	yes	no
Q498C8	RER1_RAT	No assigned EC number	0.5271	0.9381	0.9285	yes	no
P25560	RER1_YEAST	No assigned EC number	0.4836	0.9278	0.9574	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
pfam03248	175	pfam03248, Rer1, Rer1 family	1e-101
COG5249	180	COG5249, RER1, Golgi protein involved in Golgi-to-	8e-69

>gnl|CDD|202582 pfam03248, Rer1, Rer1 family

 Score =  290 bits (744), Expect = e-101
 Identities = 107/175 (61%), Positives = 128/175 (73%), Gaps = 5/175 (2%)

Query: 13  SPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYL 72
           S V+++ +   R YQ YLDKTTPH  YRWI  L +L ++ LRV   QG+Y++ Y LGIYL
Sbjct: 1   SAVTRFTNKLSRTYQRYLDKTTPHTAYRWIFFLFLLFLFILRVILAQGWYVVCYALGIYL 60

Query: 73  LNLLIGFLSPLVDPEIEVAD-----GPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIA 127
           LNL + FL+P  DP +E  D     GP LPT   DEF+PFIRRLPEFKFWYS T+A  IA
Sbjct: 61  LNLFLAFLTPKFDPSLEQEDEDVEEGPSLPTSNDDEFRPFIRRLPEFKFWYSATRATVIA 120

Query: 128 FVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKYGGK 182
              TFFS FD+PVFWPILL Y+I+LF LTMRRQI HMIKY+Y+PF+IGK KYG K
Sbjct: 121 LFCTFFSFFDIPVFWPILLMYFIILFFLTMRRQIKHMIKYKYVPFDIGKPKYGRK 175

RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex. Length = 175

>gnl|CDD|227574 COG5249, RER1, Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

 Score =  207 bits (528), Expect = 8e-69
 Identities = 80/162 (49%), Positives = 106/162 (65%), Gaps = 2/162 (1%)

Query: 21  DAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYLLNLLIGFL 80
           D   LYQ+YLD+  P    RW  T  +  ++C+R++   G+Y+I Y LGIYLLN  + FL
Sbjct: 17  DLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFL 76

Query: 81  SPLVDPEIEVA--DGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDV 138
           +P  D   E    D  +   +  +EF+PFIRRLPEFKFWY  T+A  +A + ++F +FDV
Sbjct: 77  TPKFDMSFEQIEDDDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDV 136

Query: 139 PVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNIGKQKYG 180
           PVFWPIL+ Y+I L   T RRQI HM KYRY PF+IGK+KY 
Sbjct: 137 PVFWPILVVYFIFLVFYTARRQIQHMKKYRYNPFDIGKKKYK 178

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
KOG1688	188	consensus Golgi proteins involved in ER retention	100.0
PF03248	176	Rer1: Rer1 family; InterPro: IPR004932 RER1 family	100.0
COG5249	180	RER1 Golgi protein involved in Golgi-to-ER retriev	100.0
PF09973	233	DUF2208: Predicted membrane protein (DUF2208); Int	87.73

>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-90  Score=576.91  Aligned_cols=182  Identities=68%  Similarity=1.229  Sum_probs=175.7

Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHhhheeccEEEeehhHHHHHHHHHHhhcCC
Q 029375            3 GIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYLLNLLIGFLSP   82 (194)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~yiVtY~LgIylLnlfi~FLtP   82 (194)
                      +.+++++++++|+.++.+++++.||+||||+|||+..||+++++++++|++||+..|||||||||||||+||+||+||||
T Consensus         5 ~~~~~~~~~a~~v~~~~~~~~~~yQ~yLDr~tPh~~~RW~~tl~l~~iy~iRi~~~~G~YII~Y~LgIYlLNlfiaFLtP   84 (188)
T KOG1688|consen    5 SSGEDSGGVASPVKRFFHELSQLYQHYLDRSTPHTAVRWVVTLVLLLIYCIRIYLVQGFYIITYALGIYLLNLFIAFLTP   84 (188)
T ss_pred             ccCCCCCCcchHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence            34567778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccc-cCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHH
Q 029375           83 LVDPEIEV-ADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQI  161 (194)
Q Consensus        83 k~Dp~l~~-eeg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI  161 (194)
                      |+|||+|| |||+.||++++||||||||||||||||+++|||+++|+.||||++||+|||||||++||++||++||||||
T Consensus        85 k~Dp~~~~~~dg~~Lpt~~~dEFrPFIRRLPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl~Y~i~lf~ltmrRqI  164 (188)
T KOG1688|consen   85 KVDPELQDADDGPSLPTRKSDEFRPFIRRLPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILLMYFIVLFFLTMRRQI  164 (188)
T ss_pred             CCCchhhcccCCCCCCCCCccccchHHHcCchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999964 79999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccccCCcCccccCCCCC
Q 029375          162 AHMIKYRYIPFNIGKQKYGGKKP  184 (194)
Q Consensus       162 ~HMiKyrYvPf~~gK~~y~~~~~  184 (194)
                      +|||||||+||+.||++|+++++
T Consensus       165 ~HMiKyrY~Pf~~gK~~~~~~~~  187 (188)
T KOG1688|consen  165 AHMIKYRYIPFDIGKKKYGSHSD  187 (188)
T ss_pred             HHHHhhcccccccCchhhhcccc
Confidence            99999999999999999988764

>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment

Probab=100.00  E-value=5.1e-88  Score=561.89  Aligned_cols=168  Identities=65%  Similarity=1.215  Sum_probs=163.6

Q ss_pred             HHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHhhheeccEEEeehhHHHHHHHHHHhhcCCCCCccccc----
Q 029375           15 VSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYLLNLLIGFLSPLVDPEIEV----   90 (194)
Q Consensus        15 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~yiVtY~LgIylLnlfi~FLtPk~Dp~l~~----   90 (194)
                      ++++.++++++||++|||||||++.||+++++|+++|++||+..|||||||||||||+||+||+||||++||+++|    
T Consensus         2 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FltP~~Dp~l~~~~~~   81 (176)
T PF03248_consen    2 VSRFFQKLKRTYQSYLDKSTPYTKYRWIAFLVLLFLFLLRVYYLQGWYIVTYALGIYLLNLFIAFLTPKFDPELEQDEED   81 (176)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhcceeeehHHHHHHHHHHHHHHhCCcCcccccccccc
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999984    


Q ss_pred             -cCCCCCCC--CCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029375           91 -ADGPLLPT--KGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKY  167 (194)
Q Consensus        91 -eeg~~lp~--~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI~HMiKy  167 (194)
                       |||+.||+  +++||||||+|||||||||++||||+++|++||||++||||||||||++|||+||++||||||+|||||
T Consensus        82 ~~~g~~Lp~~~~~~~EFrPFiRRlPEFkFW~~~tka~~i~~~~tff~~fdiPVFWPiLl~Yfi~lf~~tm~~qI~hMiKy  161 (176)
T PF03248_consen   82 EEEGPELPTTNENDDEFRPFIRRLPEFKFWYSCTKATVISLFCTFFPFFDIPVFWPILLVYFIVLFVLTMKRQIKHMIKY  161 (176)
T ss_pred             ccccccCCCCcccccccCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             46889999  899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcCccccCCC
Q 029375          168 RYIPFNIGKQKYGGK  182 (194)
Q Consensus       168 rYvPf~~gK~~y~~~  182 (194)
                      ||||||+||++|++|
T Consensus       162 ~Y~Pf~~gK~~y~~~  176 (176)
T PF03248_consen  162 RYVPFDFGKKKYGRK  176 (176)
T ss_pred             CCCCccccchhccCC
Confidence            999999999999986

The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane

>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

Probab=100.00  E-value=5.1e-76  Score=481.55  Aligned_cols=169  Identities=47%  Similarity=0.902  Sum_probs=159.8

Q ss_pred             hHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHhhheeccEEEeehhHHHHHHHHHHhhcCCCCCccccc--c
Q 029375           14 PVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQGFYIISYGLGIYLLNLLIGFLSPLVDPEIEV--A   91 (194)
Q Consensus        14 ~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~yiVtY~LgIylLnlfi~FLtPk~Dp~l~~--e   91 (194)
                      .+.+..+.+++.||+||||.+||+..||+.+++|+.+|++||+..+|||+|||+||||+||+|++|||||+||+.||  |
T Consensus        10 n~~~k~n~~k~LyqhylDr~~P~~~~RW~i~ggL~~lf~iRI~~~~gwY~icY~LgiyLLn~flaFLTPKfdms~eq~e~   89 (180)
T COG5249          10 NLITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPKFDMSFEQIED   89 (180)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhCCCCcccHhhhcc
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999996  3


Q ss_pred             CCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 029375           92 DGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIP  171 (194)
Q Consensus        92 eg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI~HMiKyrYvP  171 (194)
                      |+.+..++.|+|||||||||||||||+++|||+++|++.|+|++||||||||||++|||+|+.+|||||||||+||||+|
T Consensus        90 d~eieeg~kd~EFrPFIRrLPEFkFWy~s~rat~~aLi~s~F~IfDvPVfwPILvvYfi~l~f~t~rRqIqHM~KYrY~P  169 (180)
T COG5249          90 DDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTARRQIQHMKKYRYNP  169 (180)
T ss_pred             ccccccccccchhhHHHHcCchhHHHHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            44455557899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCccccCCC
Q 029375          172 FNIGKQKYGGK  182 (194)
Q Consensus       172 f~~gK~~y~~~  182 (194)
                      ||.||++|++.
T Consensus       170 fdigKkky~sh  180 (180)
T COG5249         170 FDIGKKKYKSH  180 (180)
T ss_pred             hhhhhhhhccC
Confidence            99999999763

>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues

Probab=87.73  E-value=1.1  Score=39.54  Aligned_cols=43  Identities=23%  Similarity=0.517  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 029375          119 SMTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMI  165 (194)
Q Consensus       119 ~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~lTm~rqI~HMi  165 (194)
                      +.+-.+++|+++++++..    ||++.+.||++.+++||.-.+++|-
T Consensus         7 sq~~il~fa~Vla~~p~y----~~~~filYfiv~~~i~~~~~~Rs~r   49 (233)
T PF09973_consen    7 SQVSILLFAAVLAFFPQY----YFEVFILYFIVFFGIMIVMGIRSYR   49 (233)
T ss_pred             HHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            455677889999988543    6899999999999999999888876

However, these proteins are predicted to contain three or more transmembrane segments.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00