Citrus Sinensis ID: 029382

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCEGNV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEHHHHHHHHHHcHHHEEEEHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccc
Coil and Loop (DISEMBL)
MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIrnsisvgasGALFGLLGAMLSELLTNWSLYTNKAAALITLLVIIAINLAIgilphvdnfahiggFLTGFFLGFvllprprygwldgrnlpgsaaikSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRgengndrcrwchymscvptsswncegnv
Flexible Loop (DISEMBL)
MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYmscvptsswncegnv
Low Complexity Region (SEG)
MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIsvgasgalfgllgamlsELLTNWSLYTNKaaalitllviiainlaigilPHVDNFAHIggfltgfflgfvllPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCEGNV
Disordered region (IsUnstruct)
*LCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNC****
Disordered Region (DISOPRED)
MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCEG**
Disordered Region (DISEMBL)
MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCEGNV
Disordered Region (DISPRO)
MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNC****
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCEGNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q6GMF8	857	Inactive rhomboid protein	yes	no	0.845	0.191	0.348	4e-27
Q6PIX5	856	Inactive rhomboid protein	yes	no	0.845	0.191	0.320	1e-22
A7YWH9	856	Inactive rhomboid protein	yes	no	0.845	0.191	0.320	2e-22
Q499S9	856	Inactive rhomboid protein	yes	no	0.845	0.191	0.320	2e-22
A9L8T6	855	Inactive rhomboid protein	N/A	no	0.886	0.201	0.312	3e-22
B1MT31	855	Inactive rhomboid protein	N/A	no	0.886	0.201	0.312	3e-22
Q96CC6	855	Inactive rhomboid protein	yes	no	0.886	0.201	0.333	4e-22
B0VX73	855	Inactive rhomboid protein	yes	no	0.886	0.201	0.333	5e-22
Q00M95	827	Inactive rhomboid protein	no	no	0.845	0.198	0.359	2e-21
Q80WQ6	827	Inactive rhomboid protein	no	no	0.845	0.198	0.359	4e-21

>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1

 Score =  121 bits (303), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/181 (34%), Positives = 96/181 (53%), Gaps = 17/181 (9%)

Query: 11  LEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYT 70
           LE+  G++RI +IY+LSG  G++ S +F+     VG +G+ FG+L  +  EL+ +W +  
Sbjct: 685 LEKLAGWLRISIIYILSGITGNLASAIFLPYRAEVGPAGSQFGILACLFVELIQSWQILA 744

Query: 71  NKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPG 130
               A   LL ++    A G+LP +DNFAHI GF++GFFL F  LP   +G LD      
Sbjct: 745 QPWRAFTKLLCVVLFLFAFGLLPWIDNFAHISGFISGFFLSFAFLPYISFGRLDMYR--- 801

Query: 131 SAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNC 190
                   K  Q +++LV  + L AGL V   +         +C WC  ++C+P +   C
Sbjct: 802 --------KRCQIIIFLVVFLGLFAGLVVLFYV------HPIKCEWCELLTCIPFTDKFC 847

Query: 191 E 191
           E
Sbjct: 848 E 848

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.
Danio rerio (taxid: 7955)

>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2

 Score =  106 bits (264), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 17/181 (9%)

Query: 11  LEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYT 70
           LE+  G+ RI +IYLLSG  G++ S +F+     VG +G+ FG+L  +  EL  +W +  
Sbjct: 684 LEKLAGWHRIAIIYLLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILA 743

Query: 71  NKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPG 130
               A   LL ++    A G+LP +DNFAHI GF++G FL F  LP   +G  D      
Sbjct: 744 RPWRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGLFLSFAFLPYISFGKFD------ 797

Query: 131 SAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNC 190
                  Y+    ++ +  +V L     + ++  F       RC WC +++C+P +   C
Sbjct: 798 ------LYRKRCQII-IFQVVFLGLLAGLVVLFYFYPV----RCEWCEFLTCIPFTDKFC 846

Query: 191 E 191
           E
Sbjct: 847 E 847

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Mus musculus (taxid: 10090)

>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1

 Score =  105 bits (262), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 17/181 (9%)

Query: 11  LEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYT 70
           LE+  G+ RI +IYLLSG  G++ S +F+     VG +G+ FG+L  +  EL  +W +  
Sbjct: 684 LEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILA 743

Query: 71  NKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPG 130
               A   LL ++      G+LP +DNFAHI GF++G FL F  LP   +G  D      
Sbjct: 744 RPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLPYISFGKFD------ 797

Query: 131 SAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNC 190
                  Y+    ++ +  LV L     + ++  F       RC WC +++C+P +   C
Sbjct: 798 ------LYRKRCQII-VFQLVFLGLLAGLVVLFYFYPV----RCEWCEFLTCIPFTDKFC 846

Query: 191 E 191
           E
Sbjct: 847 E 847

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Bos taurus (taxid: 9913)

>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2 SV=1

 Score =  105 bits (262), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 17/181 (9%)

Query: 11  LEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYT 70
           LE+  G+ RI +IYLLSG  G++ S +F+     VG +G+ FG+L  +  EL  +W +  
Sbjct: 684 LEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILA 743

Query: 71  NKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPG 130
               A   LL ++    A G+LP +DNFAHI GF++G FL F  LP   +G  D      
Sbjct: 744 RPWRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGLFLSFAFLPYISFGKFD------ 797

Query: 131 SAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNC 190
                  Y+    ++   ++ L +    V L   +       RC WC +++C+P +   C
Sbjct: 798 ------LYRKRCQIIIFQAVFLGLLAGLVVLFYFY-----PVRCEWCEFLTCIPFTDKFC 846

Query: 191 E 191
           E
Sbjct: 847 E 847

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Rattus norvegicus (taxid: 10116)

>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1

 Score =  104 bits (260), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 23/195 (11%)

Query: 3   CLVFIGIR------LEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLG 56
           CLV I  +      LE+  G+ RI +IYLLSG  G++ S +F+     VG +G+ FG+L 
Sbjct: 669 CLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILA 728

Query: 57  AMLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLP 116
            +  EL  +W +      A   LL ++      G+LP +DNFAHI GF++G FL F  LP
Sbjct: 729 CLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLP 788

Query: 117 RPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRW 176
              +G  D             Y+    ++ +  +V L     + ++  F       RC W
Sbjct: 789 YISFGKFD------------LYRKRCQII-IFQVVFLGLLAGLVVLFYFYPV----RCEW 831

Query: 177 CHYMSCVPTSSWNCE 191
           C +++C+P +   CE
Sbjct: 832 CEFLTCIPFTDKFCE 846

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Papio anubis (taxid: 9555)

>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3 SV=1

 Score =  104 bits (260), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 23/195 (11%)

Query: 3   CLVFIGIR------LEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLG 56
           CLV I  +      LE+  G+ RI +IYLLSG  G++ S +F+     VG +G+ FG+L 
Sbjct: 669 CLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILA 728

Query: 57  AMLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLP 116
            +  EL  +W +      A   LL ++      G+LP +DNFAHI GF++G FL F  LP
Sbjct: 729 CLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLP 788

Query: 117 RPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRW 176
              +G  D             Y+    ++ +  +V L     + ++  F       RC W
Sbjct: 789 YISFGKFD------------LYRKRCQII-VFQVVFLGLLAGLVVLFYFYPV----RCEW 831

Query: 177 CHYMSCVPTSSWNCE 191
           C +++C+P +   CE
Sbjct: 832 CEFLTCIPFTDKFCE 846

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callicebus moloch (taxid: 9523)

>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2

 Score =  104 bits (259), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/195 (33%), Positives = 97/195 (49%), Gaps = 23/195 (11%)

Query: 3   CLVFIGIR------LEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLG 56
           CLV I  +      LE+  G+ RI +IYLLSG  G++ S +F+     VG +G+ FG+L 
Sbjct: 669 CLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILA 728

Query: 57  AMLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLP 116
            +  EL  +W +      A   LL ++      G+LP +DNFAHI GF++G FL F  LP
Sbjct: 729 CLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLP 788

Query: 117 RPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRW 176
              +G  D              K  Q +++ V  + L+AGL V   +         RC W
Sbjct: 789 YISFGKFDLYR-----------KRCQIIIFQVVFLGLLAGLVVLFYVY------PVRCEW 831

Query: 177 CHYMSCVPTSSWNCE 191
           C +++C+P +   CE
Sbjct: 832 CEFLTCIPFTDKFCE 846

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Homo sapiens (taxid: 9606)

>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3 SV=1

 Score =  103 bits (258), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 65/195 (33%), Positives = 97/195 (49%), Gaps = 23/195 (11%)

Query: 3   CLVFIGIR------LEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLG 56
           CLV I  +      LE+  G+ RI +IYLLSG  G++ S +F+     VG +G+ FG+L 
Sbjct: 669 CLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILA 728

Query: 57  AMLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLP 116
            +  EL  +W +      A   LL ++      G+LP +DNFAHI GF++G FL F  LP
Sbjct: 729 CLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLP 788

Query: 117 RPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRW 176
              +G  D              K  Q +++ V  + L+AGL V   +         RC W
Sbjct: 789 YISFGKFDLYR-----------KRCQIIVFQVVFLGLLAGLVVLFYVY------PVRCEW 831

Query: 177 CHYMSCVPTSSWNCE 191
           C +++C+P +   CE
Sbjct: 832 CEFLTCIPFTDKFCE 846

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callithrix jacchus (taxid: 9483)

>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/181 (35%), Positives = 92/181 (50%), Gaps = 17/181 (9%)

Query: 11  LEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYT 70
           LE+  G+ RI +I++LSG  G++ S +F+     VG +G+ FGLL  +  EL  +W L  
Sbjct: 655 LEKLAGWHRIAIIFILSGITGNLASAIFLPYRAEVGPAGSQFGLLACLFVELFQSWQLLE 714

Query: 71  NKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPG 130
               A + L  I+      G+LP +DN AHI GFL+G  L F  LP   +G  D      
Sbjct: 715 RPWKAFLNLSAIVLFLFICGLLPWIDNIAHIFGFLSGLLLAFAFLPYITFGTSD------ 768

Query: 131 SAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNC 190
                 KY+  +  L LVSL L+ AGL  +LV+       N    W  Y++C P +S  C
Sbjct: 769 ------KYR--KRALILVSL-LVFAGLFASLVIWLYVYPIN--WPWIEYLTCFPFTSRFC 817

Query: 191 E 191
           E
Sbjct: 818 E 818

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Canis familiaris (taxid: 9615)

>sp|Q80WQ6|RHDF2_MOUSE Inactive rhomboid protein 2 OS=Mus musculus GN=Rhbdf2 PE=1 SV=1

 Score =  100 bits (250), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 65/181 (35%), Positives = 91/181 (50%), Gaps = 17/181 (9%)

Query: 11  LEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYT 70
           LE+  G+ RI +I++LSG  G++ S +F+     VG +G+ FGLL  +  EL  +W L  
Sbjct: 655 LEKLAGWHRISIIFILSGITGNLASAIFLPYRAEVGPAGSQFGLLACLFVELFQSWQLLE 714

Query: 71  NKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPG 130
               A   L  I+      G+LP +DN AHI GFL+G  L F  LP   +G  D      
Sbjct: 715 RPWKAFFNLSAIVLFLFICGLLPWIDNIAHIFGFLSGMLLAFAFLPYITFGTSD------ 768

Query: 131 SAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNC 190
                 KY+  +  L LVSL L+ AGL  +LV+       N    W  Y++C P +S  C
Sbjct: 769 ------KYR--KRALILVSL-LVFAGLFASLVLWLYIYPIN--WPWIEYLTCFPFTSRFC 817

Query: 191 E 191
           E
Sbjct: 818 E 818

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
224134785	333	predicted protein [Populus trichocarpa]	0.994	0.579	0.818	2e-88
359490352	324	PREDICTED: inactive rhomboid protein 1 [	0.984	0.589	0.785	5e-85
225455416	325	PREDICTED: inactive rhomboid protein 1 i	0.984	0.587	0.785	6e-85
449446051	323	PREDICTED: inactive rhomboid protein 1-l	0.984	0.591	0.796	4e-84
255539517	325	KOM, putative [Ricinus communis] gi|2235	0.994	0.593	0.823	3e-83
224122384	298	predicted protein [Populus trichocarpa]	0.984	0.640	0.801	3e-82
356575933	329	PREDICTED: inactive rhomboid protein 1-l	0.994	0.586	0.756	4e-81
224074883	321	predicted protein [Populus trichocarpa]	0.984	0.595	0.743	6e-80
356559853	329	PREDICTED: inactive rhomboid protein 1-l	0.994	0.586	0.787	3e-78
222616447	864	hypothetical protein OsJ_34868 [Oryza sa	0.994	0.223	0.647	2e-77

>gi|224134785|ref|XP_002321905.1| predicted protein [Populus trichocarpa] gi|222868901|gb|EEF06032.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/193 (81%), Positives = 174/193 (90%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLS 60
           ML LVFIGIRLEQQFGFVRIGV+YLLSGFGGSVLS LFIRN+ISVGASGALFGLLGAMLS
Sbjct: 139 MLSLVFIGIRLEQQFGFVRIGVVYLLSGFGGSVLSSLFIRNNISVGASGALFGLLGAMLS 198

Query: 61  ELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRY 120
           EL+TNWS+YTNKAAAL+TLLVII INLAIGILPHVDNFAHIGGFL+GF LGFVLLPRP+Y
Sbjct: 199 ELITNWSIYTNKAAALLTLLVIIVINLAIGILPHVDNFAHIGGFLSGFLLGFVLLPRPQY 258

Query: 121 GWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYM 180
           GWL+ RN+P    +KSKY+ HQY LWL+S++LLI G TVALVMLF+GENGND C WCHY+
Sbjct: 259 GWLERRNVPSGVGVKSKYRAHQYALWLISVILLIVGFTVALVMLFKGENGNDHCHWCHYL 318

Query: 181 SCVPTSSWNCEGN 193
           SCVPTS W C  N
Sbjct: 319 SCVPTSRWKCNDN 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490352|ref|XP_003634078.1| PREDICTED: inactive rhomboid protein 1 [Vitis vinifera]

 Score =  318 bits (816), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 150/191 (78%), Positives = 175/191 (91%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLS 60
           ML LV IGIRLEQQFGFVRIGVIYLLSGFGGSVLS LFI+NSISVGASGALFGLLGAMLS
Sbjct: 130 MLSLVLIGIRLEQQFGFVRIGVIYLLSGFGGSVLSSLFIQNSISVGASGALFGLLGAMLS 189

Query: 61  ELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRY 120
           EL+TNWS+YTN+AAAL+TLLVI+A+NL +GILP V+NFAHIGGF+TGFFLGF+L+PRP++
Sbjct: 190 ELITNWSMYTNRAAALLTLLVIVAVNLTVGILPRVNNFAHIGGFVTGFFLGFILMPRPQF 249

Query: 121 GWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYM 180
           GW++GRNLP    +KSKYK +QYV WLVSLVLLIAG TV LVML++G+NG++ C WCHY+
Sbjct: 250 GWIEGRNLPADVRVKSKYKAYQYVCWLVSLVLLIAGFTVGLVMLYKGKNGSEHCHWCHYL 309

Query: 181 SCVPTSSWNCE 191
           SCVPTSSW C+
Sbjct: 310 SCVPTSSWKCD 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455416|ref|XP_002279077.1| PREDICTED: inactive rhomboid protein 1 isoform 1 [Vitis vinifera] gi|297741091|emb|CBI31822.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (816), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 150/191 (78%), Positives = 175/191 (91%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLS 60
           ML LV IGIRLEQQFGFVRIGVIYLLSGFGGSVLS LFI+NSISVGASGALFGLLGAMLS
Sbjct: 131 MLSLVLIGIRLEQQFGFVRIGVIYLLSGFGGSVLSSLFIQNSISVGASGALFGLLGAMLS 190

Query: 61  ELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRY 120
           EL+TNWS+YTN+AAAL+TLLVI+A+NL +GILP V+NFAHIGGF+TGFFLGF+L+PRP++
Sbjct: 191 ELITNWSMYTNRAAALLTLLVIVAVNLTVGILPRVNNFAHIGGFVTGFFLGFILMPRPQF 250

Query: 121 GWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYM 180
           GW++GRNLP    +KSKYK +QYV WLVSLVLLIAG TV LVML++G+NG++ C WCHY+
Sbjct: 251 GWIEGRNLPADVRVKSKYKAYQYVCWLVSLVLLIAGFTVGLVMLYKGKNGSEHCHWCHYL 310

Query: 181 SCVPTSSWNCE 191
           SCVPTSSW C+
Sbjct: 311 SCVPTSSWKCD 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446051|ref|XP_004140785.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus] gi|449485528|ref|XP_004157199.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 153/192 (79%), Positives = 171/192 (89%), Gaps = 1/192 (0%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLS 60
           MLCLVFIG RLEQQFGFVRIGVIYL+SGFGGSVLS L I+N+ISVGASG+LFGLLGAMLS
Sbjct: 132 MLCLVFIGTRLEQQFGFVRIGVIYLVSGFGGSVLSSLLIQNNISVGASGSLFGLLGAMLS 191

Query: 61  ELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRY 120
           EL TNW++YTNKAAAL TLLVII IN  IG+LPHV+NFAHIGGFLTGF LGF LLPRP+Y
Sbjct: 192 ELFTNWTIYTNKAAALATLLVIIFINFGIGLLPHVNNFAHIGGFLTGFLLGFALLPRPKY 251

Query: 121 GWLDGRNLPG-SAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHY 179
           GWL+ RNLPG  A + SKYKT+QYVLW+VS+VLLIAG T+ALVMLFR EN NDRC WCHY
Sbjct: 252 GWLEQRNLPGVGAGLSSKYKTYQYVLWIVSVVLLIAGFTIALVMLFREENANDRCHWCHY 311

Query: 180 MSCVPTSSWNCE 191
           ++CVPTS W C+
Sbjct: 312 LNCVPTSRWQCD 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539517|ref|XP_002510823.1| KOM, putative [Ricinus communis] gi|223549938|gb|EEF51425.1| KOM, putative [Ricinus communis]

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 159/193 (82%), Positives = 177/193 (91%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLS 60
           MLCLVFIG+RLEQQFGFVRIG+IYL+SGF GSVLS LFIRNSISVGASGALFGLLGAMLS
Sbjct: 131 MLCLVFIGVRLEQQFGFVRIGIIYLVSGFAGSVLSSLFIRNSISVGASGALFGLLGAMLS 190

Query: 61  ELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRY 120
           EL+TNW+LYTNKAAAL+TLLVIIAINLAIGILPHVDNFAHIGGFL+GF LGF+LL RP++
Sbjct: 191 ELITNWTLYTNKAAALLTLLVIIAINLAIGILPHVDNFAHIGGFLSGFLLGFILLARPQF 250

Query: 121 GWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYM 180
           GWL+ +N+P S  +KSKYK +QYVLWLV+L LLI GL VALVMLFRGENGNDRC WCHY+
Sbjct: 251 GWLESQNVPASVGVKSKYKGYQYVLWLVALALLIVGLVVALVMLFRGENGNDRCHWCHYL 310

Query: 181 SCVPTSSWNCEGN 193
           SCVPTS W C+ N
Sbjct: 311 SCVPTSRWKCDEN 323

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122384|ref|XP_002318821.1| predicted protein [Populus trichocarpa] gi|222859494|gb|EEE97041.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 153/191 (80%), Positives = 165/191 (86%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLS 60
           ML LVFIGIRLEQQFGFVRIG++YLLSGFGGSVLS LFIRNSISVGASGALFGLLGAMLS
Sbjct: 108 MLSLVFIGIRLEQQFGFVRIGIVYLLSGFGGSVLSSLFIRNSISVGASGALFGLLGAMLS 167

Query: 61  ELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRY 120
           EL+TNWS+YTNK AAL TLLVI AINLAIGILP VDNFAHIGGFL+GF LGFVLLPR +Y
Sbjct: 168 ELITNWSIYTNKTAALFTLLVITAINLAIGILPRVDNFAHIGGFLSGFLLGFVLLPRSQY 227

Query: 121 GWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYM 180
           GW   RNLP     KSK K +QY LWLVS+ LLI G TVALVMLF+G+NGND C WCHY+
Sbjct: 228 GWQGRRNLPSGVGFKSKLKAYQYALWLVSVALLIVGFTVALVMLFKGKNGNDHCHWCHYL 287

Query: 181 SCVPTSSWNCE 191
           SCVPTS W C+
Sbjct: 288 SCVPTSRWKCD 298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575933|ref|XP_003556090.1| PREDICTED: inactive rhomboid protein 1-like isoform 1 [Glycine max]

 Score =  306 bits (783), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 146/193 (75%), Positives = 167/193 (86%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLS 60
           ML LVFIGIRLEQQFGF++IG+IYL+SGFGGSVLS LFIR+ ISVGASGALFGLLGAMLS
Sbjct: 136 MLSLVFIGIRLEQQFGFIKIGIIYLVSGFGGSVLSSLFIRDHISVGASGALFGLLGAMLS 195

Query: 61  ELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRY 120
           EL+TNW++Y+NKA ALITLLVII INL IGILPHVDNFAHIGGFL GF LGF+LLPRP++
Sbjct: 196 ELITNWTIYSNKAMALITLLVIIVINLGIGILPHVDNFAHIGGFLVGFLLGFILLPRPQF 255

Query: 121 GWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYM 180
            WL+ R LP    +KSKYK +QYVLW+VSL+LLIAGL+ ALVMLFRGE G D C WC Y+
Sbjct: 256 SWLEQRRLPAGVGMKSKYKAYQYVLWIVSLILLIAGLSTALVMLFRGEKGYDHCHWCRYL 315

Query: 181 SCVPTSSWNCEGN 193
           +CVPTS W C  +
Sbjct: 316 TCVPTSKWECSND 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074883|ref|XP_002304474.1| predicted protein [Populus trichocarpa] gi|222841906|gb|EEE79453.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (772), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 142/191 (74%), Positives = 168/191 (87%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLS 60
           ML L+FIGIRLEQQFGFVR+G+IYL+SGFGGS+LS LFI+ +ISVGASGALFGLLGAMLS
Sbjct: 130 MLSLIFIGIRLEQQFGFVRVGIIYLVSGFGGSILSSLFIQQNISVGASGALFGLLGAMLS 189

Query: 61  ELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRY 120
           ELLTNW++Y+NK AAL+TL+VIIAINLA+GILPHVDNFAHIGGF++GF LGFV L RP++
Sbjct: 190 ELLTNWTIYSNKIAALLTLVVIIAINLAVGILPHVDNFAHIGGFMSGFLLGFVFLLRPQF 249

Query: 121 GWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYM 180
           GW + R+ P  A +KSK+K +QYVL L + VLLI G T+ALVMLF+GENGND C WCHY+
Sbjct: 250 GWAENRHSPADARVKSKHKAYQYVLMLAAAVLLIVGFTLALVMLFKGENGNDHCSWCHYL 309

Query: 181 SCVPTSSWNCE 191
           SCVPTS WNC 
Sbjct: 310 SCVPTSKWNCR 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559853|ref|XP_003548211.1| PREDICTED: inactive rhomboid protein 1-like isoform 1 [Glycine max]

 Score =  296 bits (757), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 152/193 (78%), Positives = 169/193 (87%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLS 60
           ML LVFIGIRLEQQFGFVRIG+IYLLSGFGGSVLS LFIRN+ISVGASGALFGLLGAMLS
Sbjct: 137 MLSLVFIGIRLEQQFGFVRIGIIYLLSGFGGSVLSSLFIRNNISVGASGALFGLLGAMLS 196

Query: 61  ELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRY 120
           EL+TNWS+YTNKAAAL TLL II INLAIG+LPHVDNFAHIGGFLTGF LGF+LL RP++
Sbjct: 197 ELITNWSIYTNKAAALFTLLFIIVINLAIGMLPHVDNFAHIGGFLTGFLLGFILLLRPQF 256

Query: 121 GWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYM 180
           GWL+ R  P    +KSKYK +QYVLW+VS +LLI GL++ALVMLFRGENG D C WCHY+
Sbjct: 257 GWLEQRRPPAGVRLKSKYKAYQYVLWIVSAILLIVGLSIALVMLFRGENGYDHCHWCHYL 316

Query: 181 SCVPTSSWNCEGN 193
           +CVPTS W C  N
Sbjct: 317 TCVPTSKWKCNDN 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222616447|gb|EEE52579.1| hypothetical protein OsJ_34868 [Oryza sativa Japonica Group]

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 127/196 (64%), Positives = 162/196 (82%), Gaps = 3/196 (1%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLS 60
           MLCL+FIGIRLEQ+FGFVRIG++YL+SG GGS++S LFIR+SISVGASGALFGL+G+MLS
Sbjct: 134 MLCLLFIGIRLEQEFGFVRIGLVYLISGLGGSLMSALFIRSSISVGASGALFGLIGSMLS 193

Query: 61  ELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRY 120
           EL+TNWSLY NK AAL+TL+ +I +NLA+GILP VDNFAHIGG ++GF LGFV+  RP++
Sbjct: 194 ELITNWSLYANKVAALLTLVFVIVVNLALGILPRVDNFAHIGGLISGFLLGFVMFIRPQF 253

Query: 121 GWLDGRNL-PGS--AAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 177
            W++ R + PG   A +K K+KT+QY+LWL + ++LI G TVA+V+L RG N ND C WC
Sbjct: 254 AWINQRRVAPGQQPAPVKRKHKTYQYILWLAAAIMLIVGFTVAIVLLLRGYNANDHCSWC 313

Query: 178 HYMSCVPTSSWNCEGN 193
           HY+SCVPT  W C  +
Sbjct: 314 HYLSCVPTKRWKCNSS 329

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2182925	346	RBL3 "RHOMBOID-like protein 3"	0.984	0.552	0.549	2.4e-53
TAIR|locus:2015193	317	RBL2 "RHOMBOID-like 2" [Arabid	0.969	0.593	0.489	8.8e-47
TAIR|locus:2066102	389	RBL1 "RHOMBOID-like 1" [Arabid	1.0	0.498	0.484	2.7e-45
TAIR|locus:2084465	394	RBL4 "RHOMBOID-like protein 4"	0.969	0.477	0.426	3.2e-42
TAIR|locus:2195067	307	RBL6 "RHOMBOID-like protein 6"	0.979	0.618	0.450	9.6e-41
TAIR|locus:2127258	313	RBL7 "RHOMBOID-like protein 7"	0.963	0.597	0.389	3.2e-33
TAIR|locus:2035190	309	RBL5 "RHOMBOID-like protein 5"	0.855	0.537	0.315	2.7e-20
TAIR|locus:2029376	351	KOM "KOMPEITO" [Arabidopsis th	0.953	0.527	0.297	2.1e-19
ZFIN|ZDB-GENE-040704-75	857	rhbdf1 "rhomboid 5 homolog 1 (	0.891	0.201	0.246	2.8e-08
DICTYBASE|DDB_G0295849	489	DDB_G0295849 "rhomboid family	0.896	0.355	0.238	3.3e-08

TAIR|locus:2182925 RBL3 "RHOMBOID-like protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 105/191 (54%), Positives = 121/191 (63%)

Query:     1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXX 60
             ML LVFIGIRLEQQFGFVRIGVIYLLSG GGSVLS LFIRNSI                 
Sbjct:   154 MLSLVFIGIRLEQQFGFVRIGVIYLLSGIGGSVLSSLFIRNSISVGASGALFGLLGSMLS 213

Query:    61 ELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRY 120
             EL TNW++Y+NK                    PHVDNFAH+               RP++
Sbjct:   214 ELFTNWTIYSNKIAALLTLLFVILINLAIGILPHVDNFAHVGGFVTGFLLGFILLARPQF 273

Query:   121 GWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYM 180
              WL   ++P    ++ KYKT+QY+LWL+SLVLLIAG  VAL+MLFRGENGND CRWCHY+
Sbjct:   274 KWLAREHMPQGTPLRYKYKTYQYLLWLLSLVLLIAGFVVALLMLFRGENGNDHCRWCHYL 333

Query:   181 SCVPTSSWNCE 191
              CVPTSSW C+
Sbjct:   334 RCVPTSSWRCD 344

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2015193 RBL2 "RHOMBOID-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 93/190 (48%), Positives = 114/190 (60%)

Query:     1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXX 60
             ML L+FIGIRLEQQFGF+R+G+IYL+SG GGS+LS LF++ SI                 
Sbjct:   130 MLSLIFIGIRLEQQFGFIRVGLIYLISGLGGSILSSLFLQESISVGASGALFGLLGAMLS 189

Query:    61 ELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRY 120
             ELLTNW++Y NK                    P VDNFAHI               RP+Y
Sbjct:   190 ELLTNWTIYANKAAALITLLFIIAINLALGMLPRVDNFAHIGGFLTGFCLGFVLLVRPQY 249

Query:   121 GWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYM 180
             GW   R    ++  K KY  +QYVL++VS+VLL+ GLTVALVMLF+GENGN  C+WCHY+
Sbjct:   250 GWEASRT--NTSRTKRKYSMYQYVLFVVSVVLLVVGLTVALVMLFKGENGNKHCKWCHYL 307

Query:   181 SCVPTSSWNC 190
             SC PTS W C
Sbjct:   308 SCFPTSKWTC 317

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2066102 RBL1 "RHOMBOID-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 96/198 (48%), Positives = 118/198 (59%)

Query:     1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXX 60
             ML L+FIGIRLEQ+FGFVRIG++Y++SGFGGS+LS LF R  I                 
Sbjct:   149 MLSLIFIGIRLEQEFGFVRIGLLYMISGFGGSLLSSLFNRAGISVGASGALFGLLGAMLS 208

Query:    61 ELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRY 120
             ELLTNW++Y NK                    PHVDNFAH+               RP+Y
Sbjct:   209 ELLTNWTIYANKFAALLTLIFIIAINLAVGILPHVDNFAHLGGFTSGFLLGFVFLIRPQY 268

Query:   121 GWLDGRNLP-GSAA--IKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 177
             G+ + RN P G AA   KSK+K +QYVLW+ SLVLLIAG T  LV+L RG + N  C WC
Sbjct:   269 GYFNQRNNPRGYAAPSAKSKHKPYQYVLWITSLVLLIAGYTAGLVVLLRGTDLNKHCSWC 328

Query:   178 HYMSCVPTSSWNCEG-NV 194
             HY+SC+PTS W+C+  NV
Sbjct:   329 HYLSCIPTSLWSCKSQNV 346

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2084465 RBL4 "RHOMBOID-like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 81/190 (42%), Positives = 112/190 (58%)

Query:     1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXX 60
             ML L+FIGIR+E++FGF+RIG++YL+SGFGGS+LS LF+R++I                 
Sbjct:   159 MLTLLFIGIRMEREFGFIRIGLLYLISGFGGSILSALFLRSNISVGASGAVFGLLGGMLS 218

Query:    61 ELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRY 120
             E+  NW++Y+NK                    P VDNFAHI               RP Y
Sbjct:   219 EIFINWTIYSNKVVTIVTLVLIVAVNLGLGVLPGVDNFAHIGGFATGFLLGFVLLIRPHY 278

Query:   121 GWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYM 180
             GW++ RN PG  A   ++K +Q +LW +SL++L+AG  V L+ LF   +GN+ C WCHY+
Sbjct:   279 GWINQRNGPG--AKPHRFKIYQGILWTISLLILVAGFIVGLISLFNNVDGNEHCSWCHYL 336

Query:   181 SCVPTSSWNC 190
             SCVPTS W+C
Sbjct:   337 SCVPTSKWSC 346

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2195067 RBL6 "RHOMBOID-like protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 86/191 (45%), Positives = 108/191 (56%)

Query:     1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXX 60
             M  ++  GIRLEQQFGF+RIG+IYL+SGFGGS+LS LF++ SI                 
Sbjct:   117 MFDVIIFGIRLEQQFGFIRIGLIYLISGFGGSILSALFLQKSISVGASGALLGLMGAMLS 176

Query:    61 ELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRY 120
             ELLTNW++Y +K                    P VDNFAHI               +P+ 
Sbjct:   177 ELLTNWTIYKSKLCALLSFLFIIAINLAIGLLPWVDNFAHIGGLLTGFCLGFILLMQPQS 236

Query:   121 GWLDGRNLPG-SAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHY 179
             GW + RN     A  +SKY   QYVL+ V+ VL++AGLTV LVMLF GENGN  C+WCH 
Sbjct:   237 GWEEFRNSSQYGARARSKYNPCQYVLFFVAAVLVVAGLTVGLVMLFDGENGNKHCKWCHR 296

Query:   180 MSCVPTSSWNC 190
             + C PTS W+C
Sbjct:   297 LDCYPTSKWSC 307

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2127258 RBL7 "RHOMBOID-like protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 74/190 (38%), Positives = 101/190 (53%)

Query:     1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXX 60
             M C+ +IG+RLEQQFGFVR+G IYL+SGF GS+LSCLF+ ++I                 
Sbjct:   124 MCCVAYIGVRLEQQFGFVRVGTIYLVSGFCGSILSCLFLEDAISVGASSALFGLLGAMLS 183

Query:    61 ELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRY 120
             ELL NW+ Y NK                    P VDNFAHI                P++
Sbjct:   184 ELLINWTTYDNKGVAIVMLLVIVGVNLGLGTLPPVDNFAHIGGFFGGFLLGFLLLIHPQF 243

Query:   121 GWLDGRN--LPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCH 178
              W + +   +PG+  +K KY T Q VL +V+ ++ +AG T  LV+LFRG++ N  C+WCH
Sbjct:   244 EWEENQVSLMPGTI-VKPKYNTCQLVLCIVASIVFVAGFTSGLVILFRGDSLNRYCKWCH 302

Query:   179 YMSCVPTSSW 188
              +S    S W
Sbjct:   303 KLSYSSKSQW 312

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2035190 RBL5 "RHOMBOID-like protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 54/171 (31%), Positives = 81/171 (47%)

Query:     1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNS--IXXXXXXXXXXXXXXX 58
             M+ L+ IG+RLEQ+FGF+RIG +Y++SG GGS++SCL       +               
Sbjct:   126 MISLMCIGMRLEQEFGFMRIGALYVISGLGGSLVSCLTDSQGERVSVGASGALFGLLGAM 185

Query:    59 XXELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRP 118
               EL+TNW++Y NK                    P VDN AH                RP
Sbjct:   186 LSELITNWTIYENKCTALMTLILIIVLNLSVGFLPRVDNSAHFGGFLAGFFLGFVLLLRP 245

Query:   119 RYGWLDGRNLPGSAAIK---SKYKTHQYVLWLVSLVLLIAGLTVALVMLFR 166
             +YG+++ + +P    +K   SK+K +Q++    SL +L+AG       L R
Sbjct:   246 QYGYVNPKYIPPGYDMKHKKSKHKCYQHIFRFTSLAILLAGFIAGYTKLLR 296

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2029376 KOM "KOMPEITO" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 58/195 (29%), Positives = 84/195 (43%)

Query:     4 LVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXXELL 63
             L+F+GI +EQQFG +RI VIY LSG  GS+ + LF+RN                    L 
Sbjct:   145 LIFVGIYMEQQFGPLRIAVIYFLSGIMGSLFAVLFVRNIPSISSGAAFFGLIGAMLSALA 204

Query:    64 TNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRY--- 120
              NW+LY +K                    P +DNFA+I               +P+    
Sbjct:   205 KNWNLYNSKISALAIIFTIFTVNFLIGFLPFIDNFANIGGFISGFLLGFVLLFKPQLRQM 264

Query:   121 -----GWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCR 175
                  G L   ++  S  +K ++   + VL ++ L++    L   L+    G N N  C 
Sbjct:   265 PPSHKGKLFEDDMNRSTRLKEQFD--RPVLRIICLLVFCGILAGVLLAACWGVNLNRHCH 322

Query:   176 WCHYMSCVPTSSWNC 190
             WC Y+ CVPT  W+C
Sbjct:   323 WCRYVDCVPTKKWSC 337

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040704-75 rhbdf1 "rhomboid 5 homolog 1 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 139 (54.0 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 47/191 (24%), Positives = 73/191 (38%)

Query:     2 LCLVFIGIR-LEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXX 60
             +C     +R LE+  G++RI +IY+LSG  G++ S +F+                     
Sbjct:   675 VCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFLPYRAEVGPAGSQFGILACLFV 734

Query:    61 ELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRY 120
             EL+ +W +                        P +DNFAHI              P   +
Sbjct:   735 ELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLPWIDNFAHISGFISGFFLSFAFLPYISF 794

Query:   121 GWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYM 180
             G LD              K  Q +++LV  + L AGL    V+LF       +C WC  +
Sbjct:   795 GRLDMYR-----------KRCQIIIFLVVFLGLFAGL----VVLFYVHP--IKCEWCELL 837

Query:   181 SCVPTSSWNCE 191
             +C+P +   CE
Sbjct:   838 TCIPFTDKFCE 848

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0000139 "Golgi membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0016477 "cell migration" evidence=ISS

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISS

GO:0050709 "negative regulation of protein secretion" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0042058 "regulation of epidermal growth factor receptor signaling pathway" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019838 "growth factor binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

DICTYBASE|DDB_G0295849 DDB_G0295849 "rhomboid family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 135 (52.6 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 46/193 (23%), Positives = 78/193 (40%)

Query:     1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXX 60
             M+  + +G++LE+ +G  RI  IYLL G  G++ S + + NS+                 
Sbjct:   313 MVTQLRVGMQLERAYGGHRIVPIYLLCGVAGNLCSAIMLPNSVQVGASGAIFGFLGVLLT 372

Query:    61 ELLTNWSLYTNK-XXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPR 119
             +L+ NWS+                         P VDNFAH+              P   
Sbjct:   373 DLIRNWSVLAKPWLNFGSLLFSIITSFAVGLFLPGVDNFAHLGGFIAGILTAAIFLP--- 429

Query:   120 YGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVAL-VMLFRGENGNDRCRWCH 178
                    +L    AI  +      +L L+ ++ L   L VAL V+ ++  + ++ C  C 
Sbjct:   430 -------SLTPKRAIGKR------LLLLMIVIPLTVALFVALFVVFYKNIDADEWCFGCK 476

Query:   179 YMSCVPTSSWNCE 191
             Y++C+   SW C+
Sbjct:   477 YITCLQVLSW-CK 488

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	7e-32
COG0705	228	COG0705, COG0705, Membrane associated serine prote	2e-12
PTZ00101	278	PTZ00101, PTZ00101, rhomboid-1 protease; Provision	1e-09

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score =  111 bits (281), Expect = 7e-32
 Identities = 66/120 (55%), Positives = 82/120 (68%), Gaps = 1/120 (0%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLF-IRNSISVGASGALFGLLGAML 59
           ML L+F GI LE+  G VR  ++YLLSG  GS+LS LF   +S SVGASGA+FGLLGA+L
Sbjct: 27  MLALLFFGIPLERILGSVRFLLLYLLSGLAGSLLSYLFSPASSPSVGASGAIFGLLGALL 86

Query: 60  SELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPR 119
             L  N  L  N   AL+ LL II +NL +G LP + NFAH+GG + G  LGF+LL RP+
Sbjct: 87  VLLPRNRILLFNFPGALLLLLGIILLNLLLGFLPGISNFAHLGGLIAGLLLGFLLLRRPQ 146

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 10/128 (7%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNS--ISVGASGALFGLLGAM 58
           ML L   G  LE++ G +R  + YLLSG    +   LF       S+GASGA+FGLLGA 
Sbjct: 88  MLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAY 147

Query: 59  LSELLTNWSLYTNKAAALITLLVIIAINLAIGIL-------PHVDNFAHIGGFLTGFFLG 111
              L     +     +     L++I I L   +        P V   AH+GG + G  L 
Sbjct: 148 FL-LFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLA 206

Query: 112 FVLLPRPR 119
            +L  + R
Sbjct: 207 ALLSRKLR 214

Length = 228

>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 7   IGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNW 66
           +G  LE+ +G V+I ++Y L+G  G++LS       I VGAS +  GLLG + SEL+  W
Sbjct: 128 MGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILLW 187

Query: 67  SLYTNKAAALITLLVIIAINLAIGIL---PHVDNFAHIGGFLTGFFLG 111
            +  ++   +  ++    I+          ++D+  H+GG L+G  +G
Sbjct: 188 HVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMG 235

Length = 278

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	99.97
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	99.97
PTZ00101	278	rhomboid-1 protease; Provisional	99.92
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.76
COG0705	228	Membrane associated serine protease [Amino acid tr	99.73
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.67
KOG2632	258	consensus Rhomboid family proteins [Function unkno	98.16
KOG2980	310	consensus Integral membrane protease of the rhombo	97.31
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	93.42

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.97  E-value=3.3e-32  Score=237.02  Aligned_cols=173  Identities=28%  Similarity=0.617  Sum_probs=142.2

Q ss_pred             hhHHHHhHHHHHhhchHHHHHHHHHHHHHHHHHHHhhccCCceeccchhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 029382            2 LCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYTNKAAALITLLV   81 (194)
Q Consensus         2 ~~L~~~G~~lE~~~G~~r~l~iyl~sGi~G~l~s~~~~~~~~~vGASGai~Gl~ga~l~~~~~~~~~~~~~~~~l~~~~~   81 (194)
                      .+++++=+.+|+..||.|+.++|++||+.||++|++|.|+.+.||.||+-+|++++++++++++|+..++|+.+...++.
T Consensus       472 ~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ~Gila~l~vEl~qs~~il~~~w~a~~~Lia  551 (652)
T KOG2290|consen  472 CFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILERPWRAFFHLIA  551 (652)
T ss_pred             HHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccccccCCcccccchHHHHHHHHHhhhHhhhhHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999988777766


Q ss_pred             HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHhcCCCCCccCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 029382           82 IIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVAL  161 (194)
Q Consensus        82 ~~~~~~~~~~~~~i~~~aHlgG~l~G~l~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  161 (194)
                      .+++ +.+|++|.|||+||+.|+++|++.+++++|+.+|+-.+.+              +++...+++.+++..++....
T Consensus       552 ~~L~-L~iGliPWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~y--------------rKr~~ilIs~ivf~~Lla~Lv  616 (652)
T KOG2290|consen  552 TLLV-LCIGLIPWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDLY--------------RKRFYILISQIVFSGLLAILV  616 (652)
T ss_pred             HHHH-HHhccccchhhHHHHHHHHHHHHHHHHhhccccccchhhh--------------hhHHHHHHHHHHHHHHHHHHH
Confidence            5554 4459999999999999999999999999998887642221              122344455555544444444


Q ss_pred             HHHhccCCCCCCCCcccccccccCCCCCCCC
Q 029382          162 VMLFRGENGNDRCRWCHYMSCVPTSSWNCEG  192 (194)
Q Consensus       162 ~~~~~~~~~~~~C~~c~y~~C~p~~~~~C~~  192 (194)
                      |+|| ++  .-+||||+|+||+|+++.+|+.
T Consensus       617 v~fy-~~--~i~cpWce~ltClP~~~~~~e~  644 (652)
T KOG2290|consen  617 VVFY-NY--PIDCPWCEHLTCLPFTDCFCEK  644 (652)
T ss_pred             Hhee-ec--ccCCchhhhccccchhhhhhhh
Confidence            4555 33  3499999999999999999985

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-31  Score=227.52  Aligned_cols=178  Identities=57%  Similarity=0.907  Sum_probs=158.9

Q ss_pred             ChhHHHHhHHHHHhhchHHHHHHHHHHHHHHHHHHHhhccCCceeccchhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 029382            1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYTNKAAALITLL   80 (194)
Q Consensus         1 m~~L~~~G~~lE~~~G~~r~l~iyl~sGi~G~l~s~~~~~~~~~vGASGai~Gl~ga~l~~~~~~~~~~~~~~~~l~~~~   80 (194)
                      |+.|.++|..+|+.+|.+|+.++|++||++|++++.++.++.++|||||++|||+||+++++..||+.++++...+..++
T Consensus       139 ~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGASggvfaLlgA~Ls~l~~Nw~~m~~~~~~l~~ll  218 (316)
T KOG2289|consen  139 MLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGASGGVFALLGAHLSNLLTNWTIMKNKFAALRTLL  218 (316)
T ss_pred             HHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCceecccHHHHHHHHHHHHHHHhhHHHhcchHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999998888888888


Q ss_pred             HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHhcCCCCCccCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 029382           81 VIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVA  160 (194)
Q Consensus        81 ~~~~~~~~~~~~~~i~~~aHlgG~l~G~l~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  160 (194)
                      +++.+++.+|+.|++|+++|+||++.|..++++..++++++|......+.  +.+.|++.+|.+.|+...+.++.++.+.
T Consensus       219 ~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~~~~--~~~~~~~~~q~~~w~~~~~~~v~~~~~~  296 (316)
T KOG2289|consen  219 IIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGLIVL--RVFSKRLPYQLLLWIVLLVYLVAGLFAS  296 (316)
T ss_pred             HHHHHHHhhccccceeccccccccCCCcchhHHhhhccceeEEeccceee--eccccccccchHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999877655431  1334555666778888888888888888


Q ss_pred             HHHHhccCCCCCCCCccccccccc
Q 029382          161 LVMLFRGENGNDRCRWCHYMSCVP  184 (194)
Q Consensus       161 ~~~~~~~~~~~~~C~~c~y~~C~p  184 (194)
                      ++..+.+    ++|.||+++.|.|
T Consensus       297 ~~~if~~----~~~~~~~~~~~~~  316 (316)
T KOG2289|consen  297 LFNIFDG----KYCLWCHPLSCVP  316 (316)
T ss_pred             HHHhhcC----CccccccccCCCC
Confidence            8777764    6999999999986

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.92  E-value=7.1e-24  Score=178.78  Aligned_cols=116  Identities=28%  Similarity=0.571  Sum_probs=95.2

Q ss_pred             ChhHHHHhHHHHHhhchHHHHHHHHHHHHHHHHHHHhhccCCceeccchhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 029382            1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYTNKAAALITLL   80 (194)
Q Consensus         1 m~~L~~~G~~lE~~~G~~r~l~iyl~sGi~G~l~s~~~~~~~~~vGASGai~Gl~ga~l~~~~~~~~~~~~~~~~l~~~~   80 (194)
                      |++++.+|..+|+.+|++|+.++|++||+.||+++..+.+...++|||||+||++|+++++.+.+|...+.+.+.+..+.
T Consensus       122 m~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiGa~~~~lil~w~~~~~~~~~~~~~i  201 (278)
T PTZ00101        122 VFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILLWHVIRHRERVVFNII  201 (278)
T ss_pred             HHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            67899999999999999999999999999999999998887899999999999999999888888876554444333333


Q ss_pred             HHHHHHHHH--hh-CCchhHHHHHHHHHHHHHHHHHHhc
Q 029382           81 VIIAINLAI--GI-LPHVDNFAHIGGFLTGFFLGFVLLP  116 (194)
Q Consensus        81 ~~~~~~~~~--~~-~~~i~~~aHlgG~l~G~l~g~~l~~  116 (194)
                      .+.++.+..  .. .|++||+||+||+++|+++|..+.+
T Consensus       202 ~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~  240 (278)
T PTZ00101        202 FFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNS  240 (278)
T ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence            333333322  22 4789999999999999999988764

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.76  E-value=7.8e-18  Score=142.25  Aligned_cols=114  Identities=18%  Similarity=0.191  Sum_probs=83.4

Q ss_pred             ChhHHHHhHHHHHhhchHHHHHHHHHHHHHHHHHHHhhccCCceeccchhHHHHHHHHHHHHhhhhhh-hhhHHHHHHHH
Q 029382            1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSL-YTNKAAALITL   79 (194)
Q Consensus         1 m~~L~~~G~~lE~~~G~~r~l~iyl~sGi~G~l~s~~~~~~~~~vGASGai~Gl~ga~l~~~~~~~~~-~~~~~~~l~~~   79 (194)
                      |+++|++|..+|+.+|++|++.+|++||+.||+.++++.+ ...+|+||++||++|+........... ...+...+..+
T Consensus       155 ml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~-~~~gGaSGvVygL~g~~~~~~~~~p~~~~~lp~~~~~f~  233 (276)
T PRK10907        155 LLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSG-PWFGGLSGVVYALMGYVWLRGERDPQSGIYLPRGLIAFA  233 (276)
T ss_pred             HHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHH
Confidence            6789999999999999999999999999999999988864 568899999999999876432221111 11122222333


Q ss_pred             HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHh
Q 029382           80 LVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLL  115 (194)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~aHlgG~l~G~l~g~~l~  115 (194)
                      ++++++.+.-.+.++|+|.||+||+++|+++++...
T Consensus       234 llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~  269 (276)
T PRK10907        234 LLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDT  269 (276)
T ss_pred             HHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhh
Confidence            333333222112468999999999999999997765

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.73  E-value=3.3e-17  Score=134.54  Aligned_cols=117  Identities=36%  Similarity=0.508  Sum_probs=94.8

Q ss_pred             ChhHHHHhHHHHHhhchHHHHHHHHHHHHHHHHHHHhhccCC--ceeccchhHHHHHHHHHHHHhhhhhhhh---hHHHH
Q 029382            1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNS--ISVGASGALFGLLGAMLSELLTNWSLYT---NKAAA   75 (194)
Q Consensus         1 m~~L~~~G~~lE~~~G~~r~l~iyl~sGi~G~l~s~~~~~~~--~~vGASGai~Gl~ga~l~~~~~~~~~~~---~~~~~   75 (194)
                      |+.++.+|..+|+.+|+.|++.+|+++|+.+++.+..+.+..  +++||||+++|++|++............   .+...
T Consensus        88 ~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~  167 (228)
T COG0705          88 MLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPA  167 (228)
T ss_pred             HHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhH
Confidence            678999999999999999999999999999999999988766  7999999999999999763322222211   34555


Q ss_pred             HHHHHHHHHHHHHHhhCC---chhHHHHHHHHHHHHHHHHHHhcC
Q 029382           76 LITLLVIIAINLAIGILP---HVDNFAHIGGFLTGFFLGFVLLPR  117 (194)
Q Consensus        76 l~~~~~~~~~~~~~~~~~---~i~~~aHlgG~l~G~l~g~~l~~~  117 (194)
                      ...+.+++..++..+...   +++++||++|++.|.+++..+.++
T Consensus       168 ~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~  212 (228)
T COG0705         168 LILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRK  212 (228)
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            556667777777666532   699999999999999999887654

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.67  E-value=2.2e-17  Score=125.76  Aligned_cols=119  Identities=42%  Similarity=0.700  Sum_probs=86.2

Q ss_pred             ChhHHHHhHHHHHhhchHHHHHHHHHHHHHHHHHHHhhccCC-ceeccchhHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 029382            1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNS-ISVGASGALFGLLGAMLSELLTNWSLYTNKAAALITL   79 (194)
Q Consensus         1 m~~L~~~G~~lE~~~G~~r~l~iyl~sGi~G~l~s~~~~~~~-~~vGASGai~Gl~ga~l~~~~~~~~~~~~~~~~l~~~   79 (194)
                      ++.++.+|..+||.+|++|+..+|+.+++.+++.+.++.+.. +.+|+||+++|++++.......+++....+.......
T Consensus        26 ~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  105 (145)
T PF01694_consen   26 LLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLLGAFLFLYPQNKKRLRFIYLALVVP  105 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHHHHHHHHHHCCCCCS---HCCCCCC
T ss_pred             HHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHHHHHHHHHhhccchhhcchHHHHHH
Confidence            467899999999999999999999999999999999988777 8999999999999999876665543333211111111


Q ss_pred             HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHhcCCC
Q 029382           80 LVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPR  119 (194)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~aHlgG~l~G~l~g~~l~~~~~  119 (194)
                      ...+...+..+..+++|+.+|++|+++|++++..+.+|||
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~~~  145 (145)
T PF01694_consen  106 IIVLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRRPQ  145 (145)
T ss_dssp             CCCCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH---
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            2223334444557899999999999999999999987653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=98.16  E-value=1e-05  Score=67.43  Aligned_cols=110  Identities=23%  Similarity=0.343  Sum_probs=75.0

Q ss_pred             ChhHHHHhHHHHHhhc-hHHHHHHHHHHHHHHHHHHHhhcc-----C----CceeccchhHHHHHHHHHHHHhhhhh--h
Q 029382            1 MLCLVFIGIRLEQQFG-FVRIGVIYLLSGFGGSVLSCLFIR-----N----SISVGASGALFGLLGAMLSELLTNWS--L   68 (194)
Q Consensus         1 m~~L~~~G~~lE~~~G-~~r~l~iyl~sGi~G~l~s~~~~~-----~----~~~vGASGai~Gl~ga~l~~~~~~~~--~   68 (194)
                      |++++.+|.+.||.+| +.|++....+.++..++...+...     +    ...+|-||..|+.++..-+. .+.++  .
T Consensus        73 mlaL~~~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~-sp~r~~~~  151 (258)
T KOG2632|consen   73 MLALWPLGSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQ-SPVRSRSV  151 (258)
T ss_pred             HHHHHhchhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhc-Ccccchhh
Confidence            6789999999999999 889999999999988887766531     1    24699999999999886431 11111  1


Q ss_pred             hh-hHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Q 029382           69 YT-NKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFV  113 (194)
Q Consensus        69 ~~-~~~~~l~~~~~~~~~~~~~~~~~~i~~~aHlgG~l~G~l~g~~  113 (194)
                      +. ...+.  .+.-++.+-...-+.|+.|..+|++|+++|+.+++.
T Consensus       152 fg~~siP~--~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  152 FGLFSIPI--VLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             cccccccH--HHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence            10 00111  111122221222247999999999999999999984

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=97.31  E-value=4.5e-05  Score=64.82  Aligned_cols=108  Identities=30%  Similarity=0.353  Sum_probs=64.2

Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHhh----ccCCceeccchhHHHHHHHHHHHHhhhhhhhh---hHHHHHHHHH--
Q 029382           10 RLEQQFGFVRIGVIYLLSGFGGSVLSCLF----IRNSISVGASGALFGLLGAMLSELLTNWSLYT---NKAAALITLL--   80 (194)
Q Consensus        10 ~lE~~~G~~r~l~iyl~sGi~G~l~s~~~----~~~~~~vGASGai~Gl~ga~l~~~~~~~~~~~---~~~~~l~~~~--   80 (194)
                      .+....|...+..+|+.++..|......-    .+..++.||||+++++.+... .++++...+-   .+.+.-..+.  
T Consensus       185 a~~~~~~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~-~lfP~~~~~i~f~~~v~~ga~~~~~  263 (310)
T KOG2980|consen  185 ALKGSLGFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDC-TLFPKTTLYILFVFPVPAGAGLAFK  263 (310)
T ss_pred             cccCCcchhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHHh-hcCcCcceeEEEeecccccchhHHH
Confidence            44445667777788886666665544332    123478999999999999885 3455433211   1222111111  


Q ss_pred             HHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHHHHhcCC
Q 029382           81 VIIAINLAIGIL--PHVDNFAHIGGFLTGFFLGFVLLPRP  118 (194)
Q Consensus        81 ~~~~~~~~~~~~--~~i~~~aHlgG~l~G~l~g~~l~~~~  118 (194)
                      .++..++..-..  -.-|++||++|-+.|...+....++.
T Consensus       264 ~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri  303 (310)
T KOG2980|consen  264 AIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWARI  303 (310)
T ss_pred             HHHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHHHH
Confidence            222222222222  35788999999999999998876543

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=93.42  E-value=0.18  Score=36.31  Aligned_cols=37  Identities=24%  Similarity=0.274  Sum_probs=32.5

Q ss_pred             hhHHHHhHHHHHhhchHHHHHHHHHHHHHHHHHHHhh
Q 029382            2 LCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLF   38 (194)
Q Consensus         2 ~~L~~~G~~lE~~~G~~r~l~iyl~sGi~G~l~s~~~   38 (194)
                      +.+++.|+.+|+.+|++.++-...+.++..|+.....
T Consensus        29 ~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~   65 (99)
T PF08551_consen   29 LTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLL   65 (99)
T ss_pred             HHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHH
Confidence            3577899999999999999999999999999887554

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	2e-29
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	1e-21

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score =  107 bits (268), Expect = 2e-29
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLS 60
           +      G  +E+ FG V++ ++Y+++      +   ++      G SG ++ +LG +  
Sbjct: 70  LSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQ-NYVSGPAFFGLSGVVYAVLGYVFI 128

Query: 61  ELLTNWSLYTNKAAALITLLVIIAINLAIGIL-PHVDNFAHIGGFLTGFFLGFVLLPRPR 119
               N  L+         LLV IA+     +    + N AHI G + G   GF+     +
Sbjct: 129 RDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRK 188

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score = 86.2 bits (214), Expect = 1e-21
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 2/115 (1%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLS 60
           +L   ++G  +E++ G  ++ VI L+S      +   F       G SG ++ L+G +  
Sbjct: 65  LLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFS-GPWFGGLSGVVYALMGYVWL 123

Query: 61  ELLTNWSLYTNKAAALITLLVIIAINLAIGIL-PHVDNFAHIGGFLTGFFLGFVL 114
               +          LI   +I  +     +    + N AHI G   G  + FV 
Sbjct: 124 RGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.82
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.79

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.82  E-value=1.5e-19  Score=142.96  Aligned_cols=115  Identities=22%  Similarity=0.202  Sum_probs=84.6

Q ss_pred             ChhHHHHhHHHHHhhchHHHHHHHHHHHHHHHHHHHhhccCCceeccchhHHHHHHHHHHHHhhhhhh-hhhHHHHHHHH
Q 029382            1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSL-YTNKAAALITL   79 (194)
Q Consensus         1 m~~L~~~G~~lE~~~G~~r~l~iyl~sGi~G~l~s~~~~~~~~~vGASGai~Gl~ga~l~~~~~~~~~-~~~~~~~l~~~   79 (194)
                      |+.++.+|..+|+.+|++|++.+|+.+|+.|++.+.++.++. ++||||+++|++++.++.-..+.+. ...+.+.....
T Consensus        65 m~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~~~p~~~~~l~~~~~~~~  143 (181)
T 2xov_A           65 LLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW-FGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFA  143 (181)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCC-ceeHHHHHHHHHHHHHHHHhhCcCceeeeHHHHHHHH
Confidence            578999999999999999999999999999999999887654 9999999999999886432222111 11122322233


Q ss_pred             HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHhc
Q 029382           80 LVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLP  116 (194)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~aHlgG~l~G~l~g~~l~~  116 (194)
                      .++++.++...+.+++||+||+||+++|++++..+.+
T Consensus       144 ~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          144 LIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             HHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence            3333333322123689999999999999999987753

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.79  E-value=1.8e-20  Score=150.01  Aligned_cols=116  Identities=22%  Similarity=0.342  Sum_probs=83.9

Q ss_pred             ChhHHHHhHHHHHhhchHHHHHHHHHHHHHHHHHHHhhccCCceeccchhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 029382            1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYTNKAAALITLL   80 (194)
Q Consensus         1 m~~L~~~G~~lE~~~G~~r~l~iyl~sGi~G~l~s~~~~~~~~~vGASGai~Gl~ga~l~~~~~~~~~~~~~~~~l~~~~   80 (194)
                      |+.++.+|..+|+.+|++|++.+|+++|++|++.+.++.++. ++||||++||++++.+..-..+.+....+.+......
T Consensus        70 m~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~~~~~~~~~~~~~~~~~~  148 (196)
T 2nr9_A           70 LSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA-FFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLL  148 (196)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTT
T ss_pred             HHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCC-eeeHHHHHHHHHHHHHHHHHhcchhhcchHHHHHHHH
Confidence            678999999999999999999999999999999999887654 9999999999999876532222211111111111122


Q ss_pred             HHHHHHHHHh-hCCchhHHHHHHHHHHHHHHHHHHhcC
Q 029382           81 VIIAINLAIG-ILPHVDNFAHIGGFLTGFFLGFVLLPR  117 (194)
Q Consensus        81 ~~~~~~~~~~-~~~~i~~~aHlgG~l~G~l~g~~l~~~  117 (194)
                      +.++.++... ..+++||+||+||+++|++++..+.++
T Consensus       149 ~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~  186 (196)
T 2nr9_A          149 VGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKL  186 (196)
T ss_dssp             TTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence            2222332211 124899999999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	194
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	2e-09
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	3e-09

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLS 60
           +      G  +E+ FG V++ ++Y+++      +   ++      G SG ++ +LG +  
Sbjct: 67  LSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQ-NYVSGPAFFGLSGVVYAVLGYVFI 125

Query: 61  ELLTNWSLYTNKAAALITLLVIIAINLAIGIL-PHVDNFAHIGGFLTGFFLGFVLLPRPR 119
               N  L+         LLV IA+     +    + N AHI G + G   GF+     +
Sbjct: 126 RDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRK 185

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 51.6 bits (123), Expect = 3e-09
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 2/114 (1%)

Query: 1   MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLS 60
           +L   ++G  +E++ G  ++ VI L+S      +   F       G SG ++ L+G +  
Sbjct: 65  LLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW-FGGLSGVVYALMGYVWL 123

Query: 61  ELLTNWSLYTNKAAALITLLVIIAINLAIGIL-PHVDNFAHIGGFLTGFFLGFV 113
               +          LI   +I  +     +    + N AHI G   G  + FV
Sbjct: 124 RGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFV 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.75
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.69

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.75  E-value=3.7e-19  Score=139.38  Aligned_cols=114  Identities=23%  Similarity=0.360  Sum_probs=87.1

Q ss_pred             ChhHHHHhHHHHHhhchHHHHHHHHHHHHHHHHHHHhhccCCceeccchhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 029382            1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYTNKAAALITLL   80 (194)
Q Consensus         1 m~~L~~~G~~lE~~~G~~r~l~iyl~sGi~G~l~s~~~~~~~~~vGASGai~Gl~ga~l~~~~~~~~~~~~~~~~l~~~~   80 (194)
                      |+.++.+|..+|+.+|++|++.+|+.+++.|++.+....+ +..+||||+++|++++.......++.....+......++
T Consensus        67 ~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~-~~~vGaSG~v~gl~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (189)
T d2nr9a1          67 LSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSG-PAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLL  145 (189)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-SCCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC-CCcccchHHHHHHHHHHHHHHHHhhhHhccHHHHHHHHH
Confidence            5789999999999999999999999999999999887764 578999999999999887765555544332222222222


Q ss_pred             HHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHHHHh
Q 029382           81 VIIAINLAIGI-LPHVDNFAHIGGFLTGFFLGFVLL  115 (194)
Q Consensus        81 ~~~~~~~~~~~-~~~i~~~aHlgG~l~G~l~g~~l~  115 (194)
                      ..+.+.+.... .+++||.||++|+++|+++++...
T Consensus       146 ~~~~~~~~~~~~~~~v~~~aHl~G~l~G~~~g~~~~  181 (189)
T d2nr9a1         146 VGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDS  181 (189)
T ss_dssp             TTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Confidence            33333333332 478999999999999999998875

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=8.7e-17  Score=124.49  Aligned_cols=113  Identities=22%  Similarity=0.221  Sum_probs=84.3

Q ss_pred             ChhHHHHhHHHHHhhchHHHHHHHHHHHHHHHHHHHhhccCCceeccchhHHHHHHHHHHHHhhhhhhhh-hHHHHHHHH
Q 029382            1 MLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSISVGASGALFGLLGAMLSELLTNWSLYT-NKAAALITL   79 (194)
Q Consensus         1 m~~L~~~G~~lE~~~G~~r~l~iyl~sGi~G~l~s~~~~~~~~~vGASGai~Gl~ga~l~~~~~~~~~~~-~~~~~l~~~   79 (194)
                      |+.++.+|+.+|+.+|++|++.+|+++++.|++.+.++.+ +...|+||+++|++++.......+..... .+.......
T Consensus        65 ~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~-~~~~G~sg~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (180)
T d3b45a1          65 LLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSG-PWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFA  143 (180)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-SCCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHhc-cccccccchHHHHHHHHHHHhhhcchhHHhhHHHHHHHH
Confidence            5789999999999999999999999999999999988875 57889999999999988765443333221 122222222


Q ss_pred             HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHH
Q 029382           80 LVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVL  114 (194)
Q Consensus        80 ~~~~~~~~~~~~~~~i~~~aHlgG~l~G~l~g~~l  114 (194)
                      .............+++|+.||++|+++|+++++..
T Consensus       144 ~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~~~~~  178 (180)
T d3b45a1         144 LIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD  178 (180)
T ss_dssp             HHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence            22222222222357899999999999999999864