Citrus Sinensis ID: 029396

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MFLVVENVQMFYFGGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQHRS
Secondary Structure (PSIPRED)
cccccccHHHHHcccccHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccc
Coil and Loop (DISEMBL)
MFLVVENVQMFyfggtgksqQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWsnlaaftdmsppqfpeiklpedLFVRVALYLRCVFNVASkmcqdvttepdIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLqklpisavqrqhrs
Flexible Loop (DISEMBL)
MFLVVENVQMFYFGGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLdqtvlqklpisavqrqhrs
Low Complexity Region (SEG)
MFLVVENVQMFYFGGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQHRS
Disordered region (IsUnstruct)
*FLVVENVQMFYFGGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPI*********
Disordered Region (DISOPRED)
*******VQMFYFGGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTV***************
Disordered Region (DISEMBL)
MFLVVENVQMFYFGGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPIS********
Disordered Region (DISPRO)
MFLVVENVQMFYFGGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPI*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFLVVENVQMFYFGGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQHRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
O82352	255	Reticulon-like protein B5	yes	no	0.829	0.631	0.465	2e-39
Q9SUR3	275	Reticulon-like protein B1	no	no	0.896	0.632	0.408	2e-38
Q6DBN4	253	Reticulon-like protein B6	no	no	0.819	0.628	0.452	1e-37
Q9SUT9	271	Reticulon-like protein B2	no	no	0.835	0.597	0.419	5e-36
Q9FFS0	257	Reticulon-like protein B4	no	no	0.871	0.657	0.418	5e-34
Q9SH59	255	Reticulon-like protein B3	no	no	0.778	0.592	0.417	1e-28
Q9SS37	247	Reticulon-like protein B8	no	no	0.824	0.647	0.306	6e-24
Q9M145	244	Reticulon-like protein B7	no	no	0.742	0.590	0.408	2e-23
Q9LJQ5	225	Reticulon-like protein B9	no	no	0.824	0.711	0.35	6e-23
Q6NPD8	201	Reticulon-like protein B1	no	no	0.829	0.800	0.298	6e-20

>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 109/161 (67%)

Query: 33  FFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRC 92
            FE V YHL++ +CH  IL L  LFLWSN     + + PQ PEI +PE+ F+ VA  LR 
Sbjct: 93  LFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRN 152

Query: 93  VFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEK 152
             N A  + + +    D++KFL   + LW+IS++G+WF+FLT++Y+ FV+  T+PMLYEK
Sbjct: 153 ELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEK 212

Query: 153 HEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQHR 193
           HED  D  AEKA+ EL+KQY V D+ VL K+PI++++ + +
Sbjct: 213 HEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLKAKAK 253

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1

 Score =  158 bits (400), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/181 (40%), Positives = 114/181 (62%), Gaps = 7/181 (3%)

Query: 14  GGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQF 73
           GG      A W+V       FE + YHL+T +CH +I+ L+ LFLWSN   F + SPP+ 
Sbjct: 102 GGVLGGATAAWVV-------FELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKI 154

Query: 74  PEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFL 133
           PE+ +PE+  +++A  LR   N      +++ +  D++KFL A   LWV+SI+G  F+FL
Sbjct: 155 PEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFL 214

Query: 134 TILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQHR 193
           T+ Y+  V+  T+P+ Y+K+ED  D   EKA++ELKKQYAVLD+ VL K+P+  ++ + +
Sbjct: 215 TLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLGPLKNKKK 274

Query: 194 S 194
            
Sbjct: 275 D 275

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1

 Score =  155 bits (393), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 105/159 (66%)

Query: 33  FFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRC 92
            FE V YH ++ +CH +I  L+ LFL SN  AF + +PP+ PEI + E+ F+ +   LR 
Sbjct: 93  LFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRN 152

Query: 93  VFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEK 152
             N A  + + +    D++KFL     LW+IS++G+WF+FLT++Y+ FVV  T+PMLYEK
Sbjct: 153 ELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEK 212

Query: 153 HEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQ 191
           HED  D  AEK L ELKK Y V D+ VL KLP+++++ +
Sbjct: 213 HEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVASLKAK 251

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1

 Score =  150 bits (379), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 104/162 (64%)

Query: 33  FFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRC 92
            FE + YHL+T +CH +I+ L+ LFLWSN   F   SPP+ PE+ +PE+  +++A  LR 
Sbjct: 110 LFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRI 169

Query: 93  VFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEK 152
             N      +++ +  DI+KFL+A   LWV+SI+G  + FLT+ Y+  V+  T+P+ Y+K
Sbjct: 170 EINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDK 229

Query: 153 HEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQHRS 194
           +ED  D+  EKA+ ELKKQYAVLD  V  K+P   ++ + + 
Sbjct: 230 YEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRGPLKDKKKD 271

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1

 Score =  144 bits (362), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 107/177 (60%), Gaps = 8/177 (4%)

Query: 14  GGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQF 73
           GG   +  A W++       FE   YHL+ F+CH  I  L+ LFLWSN   F   S P  
Sbjct: 81  GGVLGAVTASWVL-------FELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHI 133

Query: 74  PEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFL 133
           PE+ +PED  +++   LR   N    + +++ +  D++KF+     LWV+SIIGS ++FL
Sbjct: 134 PEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFL 193

Query: 134 TILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQR 190
           T+ Y   V+  T+P+LYEK+ED  D   EKA+ E+KKQYAVLD+ VL+K+ IS + R
Sbjct: 194 TLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKV-ISKIPR 249

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 94/151 (62%)

Query: 33  FFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRC 92
            FE + Y+L+T   H  IL L+ LFLWS+ + F   SP   PE+ +PED+ +++A  LR 
Sbjct: 89  LFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRI 148

Query: 93  VFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEK 152
             N    + +D+ +  D++KFL     LWV+S +GS  +FLT++Y+  V+  T+P+LYEK
Sbjct: 149 EINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEK 208

Query: 153 HEDLADTCAEKALVELKKQYAVLDQTVLQKL 183
           +ED  D   EKA+ E+KKQY   D  VL K+
Sbjct: 209 YEDKVDDFGEKAMREIKKQYVEFDVKVLSKV 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1

 Score =  110 bits (275), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 92/160 (57%)

Query: 34  FECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCV 93
           FE + +H ++ +C++++L +   F+WSN + F + S  + P + LP+D F  V + +   
Sbjct: 87  FEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKE 146

Query: 94  FNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKH 153
            N      QD+  + ++++FL A + LWV +++GS  +FLT+LY+ FV + T+P+LYE++
Sbjct: 147 VNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERY 206

Query: 154 EDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQHR 193
           ED  D   +  +++    Y  LD   L ++P      + R
Sbjct: 207 EDEVDGFMDSMIMKFHSHYKKLDTGFLSRIPSGKFGLKKR 246

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M145|RTNLG_ARATH Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=3 SV=2

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 88/147 (59%), Gaps = 3/147 (2%)

Query: 38  GYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVA 97
           G  L+T +C   IL L   FLWSN     + SP    +I +PE   ++ A  +    N A
Sbjct: 100 GRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCA 156

Query: 98  SKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLA 157
               + +  E DI+ F+ A + LW++S+IG+WF FL++LY+ FV+  T+PMLYEK+ED  
Sbjct: 157 FATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEI 216

Query: 158 DTCAEKALVELKKQYAVLDQTVLQKLP 184
           D  AEKA++E+KK Y V +   L K+P
Sbjct: 217 DPIAEKAVIEMKKHYQVFEAKFLSKIP 243

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1

 Score =  107 bits (266), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 89/160 (55%)

Query: 32  FFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLR 91
           F  E V Y+ +T ICH+ + ++   F+WS  + F +   P  PE+ L E  F ++A    
Sbjct: 63  FLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFH 122

Query: 92  CVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYE 151
             FN       DV    D   F   T+ L+++SIIG++F+F+ +L++ FV   TLP++YE
Sbjct: 123 VRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYE 182

Query: 152 KHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQ 191
            +ED  DT A K + ++KK Y  +D  VL K+P   V+ +
Sbjct: 183 MYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNK 222

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPD8|RTNLJ_ARATH Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 91/164 (55%), Gaps = 3/164 (1%)

Query: 32  FFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLR 91
           F FE  GY    F+ ++ +L++  LFLW+  A   +   PQ P +++ E+    VA  +R
Sbjct: 38  FLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIR 97

Query: 92  CVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYE 151
              N    + +++    + ++    ++VLW +S +G++ +FLTILYL  V+SL +P LYE
Sbjct: 98  VWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYE 157

Query: 152 KHEDLADTCAEKALVELKKQYAVLDQTVLQKL---PISAVQRQH 192
           +++DL D         ++ QY  +D+ +LQK+   P + +++  
Sbjct: 158 RYQDLIDEKLSLTHRVIQTQYRKIDERLLQKIIAKPTNKIKKMQ 201

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
224124868	213	predicted protein [Populus trichocarpa]	0.835	0.760	0.549	2e-47
356574523	251	PREDICTED: reticulon-like protein B1-lik	0.850	0.657	0.478	6e-40
357134161	248	PREDICTED: reticulon-like protein B1-lik	0.927	0.725	0.442	5e-39
356534085	289	PREDICTED: reticulon-like protein B5-lik	0.850	0.570	0.472	7e-39
255537629	260	conserved hypothetical protein [Ricinus	0.829	0.619	0.465	1e-38
226528433	248	seed maturation protein [Zea mays] gi|19	0.927	0.725	0.421	1e-38
312282079	275	unnamed protein product [Thellungiella h	0.896	0.632	0.403	1e-38
13027362	279	unknown protein [Oryza sativa Japonica G	0.907	0.630	0.441	4e-38
326500350	247	predicted protein [Hordeum vulgare subsp	0.927	0.728	0.436	4e-38
115435410	178	Os01g0226300 [Oryza sativa Japonica Grou	0.907	0.988	0.441	5e-38

>gi|224124868|ref|XP_002319442.1| predicted protein [Populus trichocarpa] gi|222857818|gb|EEE95365.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/162 (54%), Positives = 121/162 (74%)

Query: 32  FFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLR 91
           F FEC+GYHL+T +CH +IL+ +T+FLWSNLA++ ++SPP+ PE+ LP++LFV   L LR
Sbjct: 50  FLFECIGYHLLTLVCHFLILSSTTVFLWSNLASYINVSPPKLPEVTLPDELFVNFLLLLR 109

Query: 92  CVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYE 151
            + N A    QDV +  D++KFL    VLWV+S+IGSWF FLT+LYL+FV+ +T PMLYE
Sbjct: 110 GIINRAFTSFQDVASGKDLKKFLKVIAVLWVLSVIGSWFSFLTLLYLLFVMLMTAPMLYE 169

Query: 152 KHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQHR 193
           K+ED  D  AEK   E+KKQ AVL++ VLQKLPI   ++ H+
Sbjct: 170 KNEDAVDIYAEKLWFEVKKQSAVLNENVLQKLPIFRSEKHHK 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574523|ref|XP_003555396.1| PREDICTED: reticulon-like protein B1-like [Glycine max]

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 79/165 (47%), Positives = 112/165 (67%)

Query: 27  GQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRV 86
           G ++  FFE + YHL+TFICH +I++L+ LFLWSN + F   SP   P + LPE+   +V
Sbjct: 87  GTAFWIFFELMQYHLITFICHLLIVSLAALFLWSNASVFIHKSPLHIPHVALPEECVHQV 146

Query: 87  ALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTL 146
           A  L    N A  + +++ T  D++KFL+   VLWVIS+IGSWF+F+T+ YL FV   TL
Sbjct: 147 ASALTIEINRAFVVVREIGTGKDLKKFLSVIAVLWVISVIGSWFNFMTLFYLFFVSLFTL 206

Query: 147 PMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQ 191
           P+LYEK+ED  D   EKA++E+KKQYAV D  VL ++PI+  ++ 
Sbjct: 207 PLLYEKYEDQVDALGEKAMIEIKKQYAVFDAKVLSQIPIAGFKKD 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357134161|ref|XP_003568686.1| PREDICTED: reticulon-like protein B1-like [Brachypodium distachyon]

 Score =  166 bits (419), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 84/190 (44%), Positives = 119/190 (62%), Gaps = 10/190 (5%)

Query: 13  FGGTGKSQQAYWLVGQSYG----------FFFECVGYHLVTFICHSIILTLSTLFLWSNL 62
            GG   +    W   Q+ G            FE +GYHL+TF+CHS+IL L+  F+WSN 
Sbjct: 59  LGGGKAADLVLWRDKQTSGSILAGVTVFWLLFEAIGYHLLTFLCHSLILFLTVCFVWSNT 118

Query: 63  AAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWV 122
           A+F + SPP+FP+  L E   +R+A  LR   N A     +V +  D++ +L +  VLW 
Sbjct: 119 ASFINRSPPKFPDAILSEVQCLRIAHVLRKEINEAFLTLSNVASGKDLKTYLKSIGVLWF 178

Query: 123 ISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQK 182
           IS+IGS F FLT+ Y +F+++ TLPMLYEK+E+  D   EKAL+E+KKQYAVLD+ VL K
Sbjct: 179 ISLIGSCFTFLTLSYTIFLMAYTLPMLYEKYEEQVDIVGEKALIEIKKQYAVLDEKVLSK 238

Query: 183 LPISAVQRQH 192
           +P+ +  +QH
Sbjct: 239 IPMLSDNKQH 248

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534085|ref|XP_003535588.1| PREDICTED: reticulon-like protein B5-like [Glycine max]

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 111/165 (67%)

Query: 27  GQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRV 86
           G ++  FFE + YHL+TFICH +I++L+ LFLWSN + F   S    P + LPE+   +V
Sbjct: 125 GTAFWIFFELMQYHLITFICHLLIVSLAALFLWSNASVFIHKSSLHIPHVALPEECVHQV 184

Query: 87  ALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTL 146
           A  L    N A  + +++ T  D++KFL+   VLWVIS+IGSWF+F+T+ YL FV   TL
Sbjct: 185 ASALTIEINRAFVIVREIGTGRDLKKFLSVIAVLWVISVIGSWFNFMTLFYLFFVSLFTL 244

Query: 147 PMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQ 191
           P+LYEK+ED  D   EKA++E+KKQYAV D  VL ++PI+  ++ 
Sbjct: 245 PLLYEKYEDQVDALGEKAMIEIKKQYAVFDAKVLSQIPIAGFKKD 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537629|ref|XP_002509881.1| conserved hypothetical protein [Ricinus communis] gi|223549780|gb|EEF51268.1| conserved hypothetical protein [Ricinus communis]

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 109/161 (67%)

Query: 34  FECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCV 93
           FE + YHL+T ICH  IL L+ LFLWSN + F + SPP  PE+ +PE+  ++VA  LR  
Sbjct: 100 FELIEYHLLTLICHGFILALAILFLWSNASTFINKSPPHIPEVHIPEEPVLQVAAALRME 159

Query: 94  FNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKH 153
            N A  + +D+ +  D++KFL+    LWV+SI+GSW +FLT+ Y+ FV+  T+P+ YEK+
Sbjct: 160 INYAFAILRDIASGRDLKKFLSVIAGLWVLSIVGSWCNFLTLFYIAFVLLHTVPVFYEKY 219

Query: 154 EDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQHRS 194
           ED  D  AEKA +E+KKQYAV D  VL K+P   ++ + ++
Sbjct: 220 EDKVDAFAEKAAIEIKKQYAVFDAKVLSKIPRGPLKDKKKA 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226528433|ref|NP_001150935.1| seed maturation protein [Zea mays] gi|195643082|gb|ACG41009.1| seed maturation protein [Zea mays] gi|413949482|gb|AFW82131.1| seed maturation protein [Zea mays]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 120/190 (63%), Gaps = 10/190 (5%)

Query: 13  FGGTGKSQQAYWLVGQSYG----------FFFECVGYHLVTFICHSIILTLSTLFLWSNL 62
            GG   +    W   Q+ G            FE +GYHL+TF+CH++I+ L+  F+WSN+
Sbjct: 59  LGGGKAADLVLWRNKQASGSILAGVTVIWLLFEGIGYHLLTFLCHALIVFLTVWFVWSNV 118

Query: 63  AAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWV 122
           A+F + SPP+FPE+ L E   ++VA   R   N A    ++V +  D++ +L +  VLW 
Sbjct: 119 ASFVNRSPPKFPEVILSEAQCLKVAHIARKEINEAFYTLRNVASGKDLKTYLMSIAVLWF 178

Query: 123 ISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQK 182
           ISIIGS F FLT+ Y +F+++ TLPMLYEK+ED  D   EKAL+E+KKQY V+D  ++ K
Sbjct: 179 ISIIGSCFSFLTVSYTIFLMAYTLPMLYEKYEDQVDVVGEKALIEIKKQYKVIDAKLISK 238

Query: 183 LPISAVQRQH 192
           +P+ + ++QH
Sbjct: 239 IPMLSEKKQH 248

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282079|dbj|BAJ33905.1| unnamed protein product [Thellungiella halophila]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 117/181 (64%), Gaps = 7/181 (3%)

Query: 14  GGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQF 73
           GG   +  A W+        FE + YHL+T +CH +I+ L+ LFLWSN   F + SPP+ 
Sbjct: 102 GGVLGAATAAWV-------LFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKI 154

Query: 74  PEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFL 133
           PE+ +PE+  +++A  LR   N      +++ +  D++KFL+A   LWV+S++G WF+FL
Sbjct: 155 PEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLSAVAGLWVLSVLGGWFNFL 214

Query: 134 TILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQHR 193
           T+ Y+  V+  T+P++Y+K+ED  D   EKA++E+KKQYAVLD+ VL K+P+  ++ + R
Sbjct: 215 TLAYIALVLLFTVPIVYDKYEDKVDPLGEKAMIEIKKQYAVLDEKVLSKIPLGPLKNKKR 274

Query: 194 S 194
            
Sbjct: 275 D 275

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13027362|dbj|BAB32723.1| unknown protein [Oryza sativa Japonica Group] gi|20804416|dbj|BAB92114.1| unknown protein [Oryza sativa Japonica Group] gi|125569591|gb|EAZ11106.1| hypothetical protein OsJ_00954 [Oryza sativa Japonica Group]

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 119/188 (63%), Gaps = 12/188 (6%)

Query: 6   ENVQMFYFGGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAF 65
            N+     GG      A W++       FE +GYHL+TF+CH +I +L  LFLWSN ++F
Sbjct: 103 RNISAGVLGGA----TAIWIL-------FELLGYHLLTFVCHGLIFSLGLLFLWSNASSF 151

Query: 66  TDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISI 125
            + SPP+ PE+ +PEDL V +AL  R   N A    + +    DI+KFL     LW++S+
Sbjct: 152 INKSPPRIPEVIIPEDLVVNIALSTRYEINRAFANLRQIALGRDIKKFLIVIAGLWLLSV 211

Query: 126 IGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPI 185
           +GS  +FLT++Y+VFVV  T+P+LYEK+ED  D+  EK  VE+KKQYAVLD  VL K+P 
Sbjct: 212 LGSCCNFLTLVYIVFVVLHTVPILYEKYEDQIDSYGEKGWVEIKKQYAVLDAKVLSKVPR 271

Query: 186 SAVQ-RQH 192
             ++ ++H
Sbjct: 272 GPLKDKKH 279

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326500350|dbj|BAK06264.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 83/190 (43%), Positives = 117/190 (61%), Gaps = 10/190 (5%)

Query: 13  FGGTGKSQQAYWLVGQSYG----------FFFECVGYHLVTFICHSIILTLSTLFLWSNL 62
            GG   +    W   Q+ G            FE +GYHL+TF+CH +I+ L+  F+WSN 
Sbjct: 58  LGGGKAADLVMWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFLCHLLIVFLTVSFVWSNA 117

Query: 63  AAFTDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWV 122
           A+F + SPP+ PE+ L E   + +A  LR   N A    Q+V +  D++ +LT+  VLW 
Sbjct: 118 ASFINRSPPKLPEVILSETQCLMIAHVLRKEINEAFLTLQNVASGKDLKTYLTSIGVLWF 177

Query: 123 ISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQK 182
           ISIIG  F FLT+ Y +F+++ TLPMLYEK+ED  D   EKAL+E+KKQY V D+ VL K
Sbjct: 178 ISIIGGCFSFLTLSYTLFLMAYTLPMLYEKYEDEVDVVGEKALIEIKKQYVVFDEKVLSK 237

Query: 183 LPISAVQRQH 192
           +P+ A ++QH
Sbjct: 238 IPMLADKKQH 247

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115435410|ref|NP_001042463.1| Os01g0226300 [Oryza sativa Japonica Group] gi|113531994|dbj|BAF04377.1| Os01g0226300, partial [Oryza sativa Japonica Group]

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 119/188 (63%), Gaps = 12/188 (6%)

Query: 6   ENVQMFYFGGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAF 65
            N+     GG      A W++       FE +GYHL+TF+CH +I +L  LFLWSN ++F
Sbjct: 2   RNISAGVLGGA----TAIWIL-------FELLGYHLLTFVCHGLIFSLGLLFLWSNASSF 50

Query: 66  TDMSPPQFPEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISI 125
            + SPP+ PE+ +PEDL V +AL  R   N A    + +    DI+KFL     LW++S+
Sbjct: 51  INKSPPRIPEVIIPEDLVVNIALSTRYEINRAFANLRQIALGRDIKKFLIVIAGLWLLSV 110

Query: 126 IGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPI 185
           +GS  +FLT++Y+VFVV  T+P+LYEK+ED  D+  EK  VE+KKQYAVLD  VL K+P 
Sbjct: 111 LGSCCNFLTLVYIVFVVLHTVPILYEKYEDQIDSYGEKGWVEIKKQYAVLDAKVLSKVPR 170

Query: 186 SAVQ-RQH 192
             ++ ++H
Sbjct: 171 GPLKDKKH 178

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2062882	255	AT2G46170 [Arabidopsis thalian	0.804	0.611	0.480	1.1e-37
TAIR|locus:2128494	275	BTI1 "VIRB2-interacting protei	0.891	0.629	0.411	4.4e-36
TAIR|locus:2128238	271	BTI2 "VIRB2-interacting protei	0.778	0.557	0.450	2.2e-34
TAIR|locus:2160447	257	BTI3 "VIRB2-interacting protei	0.804	0.607	0.445	2.5e-33
TAIR|locus:2089663	225	AT3G18260 "AT3G18260" [Arabido	0.819	0.706	0.354	5.3e-24
TAIR|locus:2049077	201	AT2G15280 "AT2G15280" [Arabido	0.783	0.756	0.315	8e-21
TAIR|locus:2082772	264	AT3G61560 [Arabidopsis thalian	0.788	0.579	0.347	7.5e-18
TAIR|locus:1005716554	249	AT3G10915 [Arabidopsis thalian	0.773	0.602	0.278	2.6e-15
TAIR|locus:2080315	203	AT3G54120 "AT3G54120" [Arabido	0.628	0.600	0.311	1.1e-14
TAIR|locus:2046783	206	RTNLB13 "AT2G23640" [Arabidops	0.675	0.635	0.259	5.7e-09

TAIR|locus:2062882 AT2G46170 [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 75/156 (48%), Positives = 107/156 (68%)

Query:    34 FECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCV 93
             FE V YHL++ +CH  IL L  LFLWSN     + + PQ PEI +PE+ F+ VA  LR  
Sbjct:    94 FELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNE 153

Query:    94 FNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKH 153
              N A  + + +    D++KFL   + LW+IS++G+WF+FLT++Y+ FV+  T+PMLYEKH
Sbjct:   154 LNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKH 213

Query:   154 EDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQ 189
             ED  D  AEKA+ EL+KQY V D+ VL K+PI++++
Sbjct:   214 EDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLK 249

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2128494 BTI1 "VIRB2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 74/180 (41%), Positives = 114/180 (63%)

Query:    14 GGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQF 73
             GG      A W+V       FE + YHL+T +CH +I+ L+ LFLWSN   F + SPP+ 
Sbjct:   102 GGVLGGATAAWVV-------FELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKI 154

Query:    74 PEIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFL 133
             PE+ +PE+  +++A  LR   N      +++ +  D++KFL A   LWV+SI+G  F+FL
Sbjct:   155 PEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFL 214

Query:   134 TILYLVFVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQHR 193
             T+ Y+  V+  T+P+ Y+K+ED  D   EKA++ELKKQYAVLD+ VL K+P+  ++ + +
Sbjct:   215 TLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLGPLKNKKK 274

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

TAIR|locus:2128238 BTI2 "VIRB2-interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 68/151 (45%), Positives = 100/151 (66%)

Query:    34 FECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCV 93
             FE + YHL+T +CH +I+ L+ LFLWSN   F   SPP+ PE+ +PE+  +++A  LR  
Sbjct:   111 FELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIE 170

Query:    94 FNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKH 153
              N      +++ +  DI+KFL+A   LWV+SI+G  + FLT+ Y+  V+  T+P+ Y+K+
Sbjct:   171 INRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKY 230

Query:   154 EDLADTCAEKALVELKKQYAVLDQTVLQKLP 184
             ED  D+  EKA+ ELKKQYAVLD  V  K+P
Sbjct:   231 EDKVDSYGEKAMAELKKQYAVLDAKVFSKIP 261

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2160447 BTI3 "VIRB2-interacting protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 70/157 (44%), Positives = 100/157 (63%)

Query:    34 FECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCV 93
             FE   YHL+ F+CH  I  L+ LFLWSN   F   S P  PE+ +PED  +++   LR  
Sbjct:    94 FELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIE 153

Query:    94 FNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKH 153
              N    + +++ +  D++KF+     LWV+SIIGS ++FLT+ Y   V+  T+P+LYEK+
Sbjct:   154 INRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKY 213

Query:   154 EDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQR 190
             ED  D   EKA+ E+KKQYAVLD+ VL+K+ IS + R
Sbjct:   214 EDKVDAYGEKAMREIKKQYAVLDEKVLRKV-ISKIPR 249

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2089663 AT3G18260 "AT3G18260" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 57/161 (35%), Positives = 93/161 (57%)

Query:    32 FFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLR 91
             F  E V Y+ +T ICH+ + ++   F+WS  + F +   P  PE+ L E  F ++A    
Sbjct:    63 FLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFH 122

Query:    92 CVFN-VASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLY 150
               FN + +K+  DV    D   F   T+ L+++SIIG++F+F+ +L++ FV   TLP++Y
Sbjct:   123 VRFNQILTKLL-DVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMY 181

Query:   151 EKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQRQ 191
             E +ED  DT A K + ++KK Y  +D  VL K+P   V+ +
Sbjct:   182 EMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNK 222

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049077 AT2G15280 "AT2G15280" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/152 (31%), Positives = 86/152 (56%)

Query:    32 FFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLR 91
             F FE  GY    F+ ++ +L++  LFLW+  A   +   PQ P +++ E+    VA  +R
Sbjct:    38 FLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIR 97

Query:    92 CVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYE 151
                N    + +++    + ++    ++VLW +S +G++ +FLTILYL  V+SL +P LYE
Sbjct:    98 VWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYE 157

Query:   152 KHEDLADTCAEKALVELKKQYAVLDQTVLQKL 183
             +++DL D         ++ QY  +D+ +LQK+
Sbjct:   158 RYQDLIDEKLSLTHRVIQTQYRKIDERLLQKI 189

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082772 AT3G61560 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 59/170 (34%), Positives = 87/170 (51%)

Query:    34 FECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFP------EIKLPEDL-FVRV 86
             FE V YH ++ +CH +I  L+ LFL SN  AF  M+   FP      E +    L + + 
Sbjct:    94 FELVEYHFLSLVCHILIFALAALFLLSNAHAF--MNKGTFPYDCFCTEKRAEPGLCYFKE 151

Query:    87 ALYLRCVFNVASKMCQDVTTEPDIRKFLTATLV-------LWVISIIGSWFDFLTILYLV 139
                 + +  ++ ++ Q       I  F+T T +        W +  +G     + +L   
Sbjct:   152 HCLRKGLEEISHELIQSTYETFSIMGFVTRTSIYIGISGGFWAVDNLGCG-KLVQLLDSC 210

Query:   140 FVVSLTLPMLYEKHEDLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQ 189
             FVV  T+PMLYEKHED  D  AEK L ELKK Y V D+ VL KLP+++++
Sbjct:   211 FVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVASLK 260

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:1005716554 AT3G10915 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 42/151 (27%), Positives = 74/151 (49%)

Query:    34 FECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCV 93
             FE  G   ++     +++ +   F+ + ++AF +      PE+ L E++    A   R  
Sbjct:    89 FEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIK 148

Query:    94 FNVASKMCQDVTTEPDIRKFLTATLV-LWVISIIGSWFDFLTILYLVFVVSLTLPMLYEK 152
              N    M  DVT   D R F    ++ LW++S IGS+    T+LY+  ++S+T+P LY K
Sbjct:   149 LNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSK 208

Query:   153 HEDLADTCAEKALVELKKQYAVLDQTVLQKL 183
             ++   D C       L   Y ++D+ V+ +L
Sbjct:   209 YQSKVDKCCGTIHRRLSHHYKIVDENVISRL 239

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080315 AT3G54120 "AT3G54120" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 38/122 (31%), Positives = 65/122 (53%)

Query:    34 FECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFVRVALYLRCV 93
             FE   Y + T I   ++L LS LFLWS  A+  +   P  PE ++ E +    +++LR  
Sbjct:    50 FEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIH 109

Query:    94 FNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKH 153
              N   ++  D+    D   +    + L+++S+IGS  DF T+ +   +V +T+P  YE++
Sbjct:   110 VNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERY 169

Query:   154 ED 155
             ED
Sbjct:   170 ED 171

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046783 RTNLB13 "AT2G23640" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 5.7e-09, P = 5.7e-09
 Identities = 34/131 (25%), Positives = 58/131 (44%)

Query:    25 LVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSPPQFPEIKLPEDLFV 84
             LV  S        G+  +T +    I  +S +FLW +L        P+   +++ E+  V
Sbjct:    33 LVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVV 92

Query:    85 RVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSL 144
                   R +     +    V  E +   F    L  W++S IG+  DF T L++  V+ L
Sbjct:    93 ETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGL 152

Query:   145 TLPMLYEKHED 155
             T+P L+E++ D
Sbjct:   153 TVPKLWEEYGD 163

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
pfam02453	164	pfam02453, Reticulon, Reticulon	1e-29

>gnl|CDD|217046 pfam02453, Reticulon, Reticulon

 Score =  106 bits (267), Expect = 1e-29
 Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 1/140 (0%)

Query: 32  FFFECVGYHLVTFICHSIILTLSTLFLWSNLA-AFTDMSPPQFPEIKLPEDLFVRVALYL 90
             F   GY L++ + + ++L L+  FLW         +  P  P++ L E+    +A  L
Sbjct: 25  LLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLLNAVPEPLDPDVTLSEETVEEIADSL 84

Query: 91  RCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLY 150
           R + N A K  + +    D+   L A + LW++S +GS F  LT+LY+  +++ T+P+LY
Sbjct: 85  RVLINKALKELRRLFLGEDLVDSLKAAVGLWLLSYLGSLFSGLTLLYIGVILAFTVPLLY 144

Query: 151 EKHEDLADTCAEKALVELKK 170
           EK++D  D   EKA  ++KK
Sbjct: 145 EKYQDEIDAYVEKAKAKVKK 164

Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	100.0
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	99.96
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	93.75
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	91.79
PF04842	683	DUF639: Plant protein of unknown function (DUF639)	88.36

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.6e-44  Score=300.60  Aligned_cols=182  Identities=37%  Similarity=0.678  Sum_probs=174.7

Q ss_pred             eehhccCchhHHHHHH----------HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhCC-CCC--CCC-
Q 029396            9 QMFYFGGTGKSQQAYW----------LVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDM-SPP--QFP-   74 (194)
Q Consensus         9 ~~~~~~~~~~~~~~~~----------~~~~l~~~Lf~~~~ysliS~~s~ill~~l~~~fl~~~~~~~~~~-~~p--~~p-   74 (194)
                      -..++|+|++||..+|          ..++++|++|+.++|+.+|++|+++++.+.+.|.|++...+++| ++|  ..| 
T Consensus        34 v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~  113 (230)
T KOG1792|consen   34 VHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPV  113 (230)
T ss_pred             ccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCc
Confidence            3567899999999999          78899999999999999999999999999999999999888888 666  688 


Q ss_pred             CcccCHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhch
Q 029396           75 EIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHE  154 (194)
Q Consensus        75 ~~~isee~~~~~a~~v~~~in~~l~~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~yq  154 (194)
                      |+++|||.+++.+++++.++|+.++.+|++++|+|+++|+|++++||++|++|+|||++|++|+|++++||+|++||+||
T Consensus       114 ~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~YEky~  193 (230)
T KOG1792|consen  114 EITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLYEKYE  193 (230)
T ss_pred             eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchhHHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchh
Q 029396          155 DLADTCAEKALVELKKQYAVLDQTVLQKLPISAVQR  190 (194)
Q Consensus       155 ~~ID~~~~~~~~~~~~~y~~~~~kv~~kiP~~~~k~  190 (194)
                      |+||++++++.++.+++|+++|+|+++|||+++.++
T Consensus       194 d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~  229 (230)
T KOG1792|consen  194 DQIDPYLGKVMEELKKHYRKFDEKVLSKIPAGPRKK  229 (230)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence            999999999999999999999999999999988654

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=99.96  E-value=2.8e-32  Score=216.89  Aligned_cols=158  Identities=27%  Similarity=0.415  Sum_probs=49.2

Q ss_pred             hccCchhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhCCCC------CCCCCcccCHHHHHH
Q 029396           12 YFGGTGKSQQAYWLVGQSYGFFFECVGYHLVTFICHSIILTLSTLFLWSNLAAFTDMSP------PQFPEIKLPEDLFVR   85 (194)
Q Consensus        12 ~~~~~~~~~~~~~~~~~l~~~Lf~~~~ysliS~~s~ill~~l~~~fl~~~~~~~~~~~~------p~~p~~~isee~~~~   85 (194)
                      +|.+++.+- ....++.++|+++.++++|++|++|+++++.+++.+++......+++.+      |+.++.++|||.+++
T Consensus         6 ~W~~~~~S~-~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (169)
T PF02453_consen    6 LWRDPKKSG-IVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEERVER   84 (169)
T ss_dssp             ------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCHHHHH
T ss_pred             EecCCCchH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHHHHHH
Confidence            344444442 2336677778999999999999999999999999999988888888765      445588999999999


Q ss_pred             HHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhchhHHHHHHHHHH
Q 029396           86 VALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLADTCAEKAL  165 (194)
Q Consensus        86 ~a~~v~~~in~~l~~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~yq~~ID~~~~~~~  165 (194)
                      .++.+++.+|..++.+|+++.++|+..|+|+++++|+++.+|+++|++|++|++++++||+|.+||+||++||+++++++
T Consensus        85 ~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~~~~~  164 (169)
T PF02453_consen   85 LADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYVAKVK  164 (169)
T ss_dssp             HHHHCCCCCCHHHHHHHCCCHCT-TTGGG---------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHH
Q 029396          166 VELKK  170 (194)
Q Consensus       166 ~~~~~  170 (194)
                      +++||
T Consensus       165 ~~~~k  169 (169)
T PF02453_consen  165 EKVKK  169 (169)
T ss_dssp             -----
T ss_pred             HHhcC
Confidence            88763

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.75  E-value=0.26  Score=41.89  Aligned_cols=78  Identities=19%  Similarity=0.215  Sum_probs=64.7

Q ss_pred             hcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhc-----------------------hhH
Q 029396          100 MCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKH-----------------------EDL  156 (194)
Q Consensus       100 ~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~y-----------------------q~~  156 (194)
                      ...+++.|||.+.++.+.++..++-.+-.+++..++...+.+..+++++.|-++                       |+.
T Consensus        42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~  121 (230)
T KOG1792|consen   42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF  121 (230)
T ss_pred             chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence            578999999999999999999999999888888888888888888777777665                       567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 029396          157 ADTCAEKALVELKKQYAVLDQ  177 (194)
Q Consensus       157 ID~~~~~~~~~~~~~y~~~~~  177 (194)
                      +++++..++.+++...+++.+
T Consensus       122 ~~~~a~~~~~~in~~l~~l~~  142 (230)
T KOG1792|consen  122 VLALASSLRVEINQALSELRD  142 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            788888888888776666655

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=91.79  E-value=1.1  Score=35.97  Aligned_cols=63  Identities=11%  Similarity=0.057  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 029396           89 YLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYE  151 (194)
Q Consensus        89 ~v~~~in~~l~~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe  151 (194)
                      .+...+....+.++.++.|+|+..|..+++++++.+.+--+..+..++.+..+-.++=|++=.
T Consensus        73 ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~  135 (156)
T PF08372_consen   73 NVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRN  135 (156)
T ss_pred             HHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccC
Confidence            334445567889999999999999999999998888887777777777777677777766644

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function

Probab=88.36  E-value=8.6  Score=37.58  Aligned_cols=99  Identities=15%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhchhHH
Q 029396           78 LPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLTATLVLWVISIIGSWFDFLTILYLVFVVSLTLPMLYEKHEDLA  157 (194)
Q Consensus        78 isee~~~~~a~~v~~~in~~l~~lr~l~~g~d~~~~lKv~~~L~vls~vGs~~s~~TLl~i~~v~~FTlP~lYe~yq~~I  157 (194)
                      +.=..+...++......|-++-++|.|.+...+..+-+|++.|..++.+--.+.+--++...++-.||-..=+.+     
T Consensus       580 lalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr-----  654 (683)
T PF04842_consen  580 LALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRR-----  654 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch-----
Confidence            455556666788888899999999999999999999999999999999999999999999999888885432211     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchh
Q 029396          158 DTCAEKALVELKKQYAVLDQTVLQKLPISAVQR  190 (194)
Q Consensus       158 D~~~~~~~~~~~~~y~~~~~kv~~kiP~~~~k~  190 (194)
                       ...++..+++++.+        ..||-+|..-
T Consensus       655 -~s~er~~RRlrEWW--------~sIPAaPV~v  678 (683)
T PF04842_consen  655 -ESSERFNRRLREWW--------DSIPAAPVQV  678 (683)
T ss_pred             -hhHHHHHHHHHHHH--------hhCCccceEe
Confidence             12233444444333        4678877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 39/296 (13%), Positives = 78/296 (26%), Gaps = 121/296 (40%)

Query: 14  GGTGKSQQAYWLVGQSYGFF-FECV---GYHLVTFI-CHS---IILTLSTLF--LWSNLA 63
            G+GK+    W+       +  +C        +    C+S   ++  L  L   +  N  
Sbjct: 159 LGSGKT----WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 64  AFTDMS---PPQFPEIKLPEDLFVRVALYLRC--------------VFNVASKMCQDVTT 106
           + +D S     +   I+      ++   Y  C               FN++ K+   +TT
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTT 272

Query: 107 ------------------EPDIRKFLTAT-----LVLW------------------VISI 125
                                    LT       L+ +                   +SI
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 126 IGS--------W-------FD--------FLTIL--------YLVFVV--------SLTL 146
           I          W        D         L +L        +    V        ++ L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 147 PML-----YEKHEDLADTCAEKALVEL---KKQYAVLDQTVLQKLPISAVQRQHRS 194
            ++           + +   + +LVE    +   ++    +  K+ +      HRS
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
2ko2_A	79	Reticulon-4; NOGO, membrane protein, peripheral, D	98.5
2g31_A	60	Reticulon-4; NOGO, helix, signaling protein; NMR {	97.85

>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}

Probab=98.50  E-value=7.3e-09  Score=72.80  Aligned_cols=59  Identities=15%  Similarity=0.135  Sum_probs=56.1

Q ss_pred             HHHHHHHhhhCCCCCCCC-------CcccCHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHH
Q 029396           57 FLWSNLAAFTDMSPPQFP-------EIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPDIRKFLT  115 (194)
Q Consensus        57 fl~~~~~~~~~~~~p~~p-------~~~isee~~~~~a~~v~~~in~~l~~lr~l~~g~d~~~~lK  115 (194)
                      .+|..+.+.++|++..+|       |+.+|+|.+++.++.+..++|.++..+|++++++|+.+|+|
T Consensus        14 RiYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK   79 (79)
T 2ko2_A           14 RIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK   79 (79)
T ss_dssp             THHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred             HHHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence            489999999999999888       89999999999999999999999999999999999999876

>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A

Probab=97.85  E-value=1.7e-07  Score=62.59  Aligned_cols=51  Identities=16%  Similarity=0.148  Sum_probs=44.0

Q ss_pred             HHHHHhhhCCCCCCCC-------CcccCHHHHHHHHHHHHHHHHHHHHhcchhccccC
Q 029396           59 WSNLAAFTDMSPPQFP-------EIKLPEDLFVRVALYLRCVFNVASKMCQDVTTEPD  109 (194)
Q Consensus        59 ~~~~~~~~~~~~p~~p-------~~~isee~~~~~a~~v~~~in~~l~~lr~l~~g~d  109 (194)
                      |.++.+.++|++..+|       |+.+|+|.+++.++.+..++|.++..+|++++++|
T Consensus         3 Yk~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed   60 (60)
T 2g31_A            3 YKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD   60 (60)
T ss_dssp             CCTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred             HHHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence            3444556667776677       89999999999999999999999999999999987

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00