Citrus Sinensis ID: 029397

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MVVRVIESKNRAETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASLKKVSPPASVDLPATKQPVAAVNHRSASRPFSPPSIGYRCQPSSPPYGCPVSGKVCYYPCHLQGTPRSLYYGPHNNYWH
Secondary Structure (PSIPRED)
ccHHHHHccccccEEEEEEEEccEEEEccccccEEEEcccEEEEEEcccccHHHHHHHHHHHHcccEEEEEEccccccccEEEcccHHHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccEEEEEEEcccEEccccccccEEEEcccEEEEEEcccccHHHHHHHHHHHHcccEEEEEEccccHHHHHHccccEccHHHcccccHHccccccEEEEEEcccccccccccccccccccccHEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccc
Coil and Loop (DISEMBL)
MVVRVIESKNRAETLKFLCSYggkilprsmdgqlryVGGLTRVLSVERSISFAELMVKLGEFCGYsvtlrcqlpngdletlisiksdDDLANLIEEYdraapsskirailsppaslkkvsppasvdlpatkqpvaavnhrsasrpfsppsigyrcqpssppygcpvsgkvcyypchlqgtprslyygphnnywh
Flexible Loop (DISEMBL)
mvvrviesknraeTLKFLCSyggkilprsmdgqLRYVGGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEydraapsskirAILSPPASLKKVSPPASVDLPATKQPVAAVNHRSASRPFSPPSIGYRCQPSSPPYGCPVSGKVCYYPCHLqgtprslyygphnNYWH
Low Complexity Region (SEG)
MVVRVIESKNRAETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASLKKVSPPASVDLPATKQPVAAVNHRSASRPFSPPSIGYRCQPSSPPYGCPVSGKVCYYPCHLQGTPRSLYYGPHNNYWH
Disordered region (IsUnstruct)
***********AETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEE*****************************************************************YGCPVSGKVCYYPCHLQGTPRSLYYGPHNNY**
Disordered Region (DISOPRED)
*****************LCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL************************************************************************************
Disordered Region (DISEMBL)
MVVRVIESKNRAETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASLKKVSPPASVDLPATKQ***************PPSIGYRCQPSSPPYGCPVSGKVCYYPCHLQGTPRSLYYGPHNNYWH
Disordered Region (DISPRO)
MVVRVIESKNRAETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPA****************KQPVAAVNHRSASRPFSPPSIGY*CQPSSPPYGCPVSGKVCYYPCHLQGTPRSLYYGPHNNYWH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVRVIESKNRAETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASLKKVSPPASVDLPATKQPVAAVNHRSASRPFSPPSIGYRCQPSSPPYGCPVSGKVCYYPCHLQGTPRSLYYGPHNNYWH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
224133658	175	predicted protein [Populus trichocarpa]	0.798	0.885	0.672	7e-51
449440620	202	PREDICTED: uncharacterized protein LOC10	0.932	0.896	0.575	1e-49
224119414	175	predicted protein [Populus trichocarpa]	0.757	0.84	0.689	9e-49
255540527	181	ATP binding protein, putative [Ricinus c	0.639	0.685	0.734	1e-42
297816012	179	octicosapeptide/Phox/Bem1p domain-contai	0.690	0.748	0.647	9e-41
356516637	186	PREDICTED: uncharacterized protein LOC10	0.917	0.956	0.530	2e-40
356507288	194	PREDICTED: uncharacterized protein LOC10	0.953	0.953	0.528	1e-39
297793907	191	predicted protein [Arabidopsis lyrata su	0.603	0.612	0.703	1e-39
15228362	180	octicosapeptide/Phox/Bem1p domain-contai	0.690	0.744	0.632	2e-39
357461819	257	hypothetical protein MTR_3g077030 [Medic	0.907	0.684	0.534	1e-38

>gi|224133658|ref|XP_002321629.1| predicted protein [Populus trichocarpa] gi|222868625|gb|EEF05756.1| predicted protein [Populus trichocarpa]

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 107/159 (67%), Positives = 124/159 (77%), Gaps = 4/159 (2%)

Query: 5   VIESKNRAETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCG 64
           +I++K +AETLKFLCSY GK+LPRS DG LRYVGG+TRVL+V+RSIS+AELMVKLGEFCG
Sbjct: 3   MIDNKAKAETLKFLCSYSGKLLPRSSDGVLRYVGGMTRVLAVDRSISYAELMVKLGEFCG 62

Query: 65  YSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASLKKVSPPAS 124
           +SV LRC LPNGDLETLIS+KSD++L NLI EYDR+ P SKIRAIL PP SLKK+SPP S
Sbjct: 63  FSVELRCPLPNGDLETLISVKSDEELTNLITEYDRSCPGSKIRAILFPPKSLKKISPPTS 122

Query: 125 VDLPATKQPVAAVNHRSASRPFSPPSIGY---RCQPSSP 160
                   P  +V +   S  FSPP IGY   RC PS P
Sbjct: 123 NASSIEFSPTKSVLNHDRSGSFSPP-IGYKGRRCSPSRP 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440620|ref|XP_004138082.1| PREDICTED: uncharacterized protein LOC101222072 [Cucumis sativus] gi|449530124|ref|XP_004172046.1| PREDICTED: uncharacterized LOC101222072 [Cucumis sativus]

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 133/191 (69%), Gaps = 10/191 (5%)

Query: 14  TLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQL 73
           TLKFLCSYGGKILPR  DG+LRYVGGLTRVL+VERS+SF+ELMVKLGEFCG SVTL+CQL
Sbjct: 12  TLKFLCSYGGKILPRQTDGKLRYVGGLTRVLAVERSVSFSELMVKLGEFCGSSVTLKCQL 71

Query: 74  PNGDLETLISIKSDDDLANLIEEYDRAAPS----SKIRAILSPPASLKKVSPPASVDLPA 129
           P GDLETLIS++SD+DLAN++EEYDRA+ S     KIRAILSPP SLK++SPP+SVD   
Sbjct: 72  PGGDLETLISVRSDEDLANIVEEYDRASSSLSHPLKIRAILSPPKSLKQISPPSSVDSTL 131

Query: 130 TKQPVAAVN------HRSASRPFSPPSIGYRCQPSSPPYGCPVSGKVCYYPCHLQGTPRS 183
              P    +          S   S PS  +  +  SPP    V  + C+      G+PR 
Sbjct: 132 PNSPCYGADSLPSSPQYGNSERISSPSYRFIRRIPSPPSKYFVGPRNCHGRTCCHGSPRF 191

Query: 184 LYYGPHNNYWH 194
           LY GP+  +W+
Sbjct: 192 LYSGPNCTHWN 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119414|ref|XP_002318066.1| predicted protein [Populus trichocarpa] gi|222858739|gb|EEE96286.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (503), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 102/148 (68%), Positives = 119/148 (80%), Gaps = 1/148 (0%)

Query: 7   ESKNRAETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYS 66
           ++K + ETLKFLCSYGGKILPRS DG LRYVGGLTRVL+V+RSIS+AELMVKLGEFCGYS
Sbjct: 6   KTKTKPETLKFLCSYGGKILPRSSDGVLRYVGGLTRVLAVDRSISYAELMVKLGEFCGYS 65

Query: 67  VTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASLKKVSPPASVD 126
           V LRCQLP+GDLETLIS+KS+D+L +LI E+DR+ P SKIRAILSPP SLKK+SPP S  
Sbjct: 66  VELRCQLPDGDLETLISVKSEDELKSLILEFDRSCPGSKIRAILSPPKSLKKISPPTSNA 125

Query: 127 LPATKQPVAAVNHRSASRPFSPPSIGYR 154
                 P  +  +   SR  SPP IGY+
Sbjct: 126 SSIDFSPTKSFLNYHQSRSCSPP-IGYK 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540527|ref|XP_002511328.1| ATP binding protein, putative [Ricinus communis] gi|223550443|gb|EEF51930.1| ATP binding protein, putative [Ricinus communis]

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/128 (73%), Positives = 109/128 (85%), Gaps = 4/128 (3%)

Query: 8   SKNRAETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYSV 67
           S+++  TLKFLCSYGGKI+PRS+DG LRYVGGLTRVL+V+RSISFAELMVKLGEFCGYSV
Sbjct: 6   SESKRSTLKFLCSYGGKIVPRSIDGSLRYVGGLTRVLAVDRSISFAELMVKLGEFCGYSV 65

Query: 68  TLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASLKKV----SPPA 123
            LRCQLPNGDLETLISIKS+++L  LIEEY+R    SKIRA+L+PP SLK +    S P+
Sbjct: 66  ELRCQLPNGDLETLISIKSEEELRFLIEEYNRNCRGSKIRAVLTPPKSLKTISPPPSTPS 125

Query: 124 SVDLPATK 131
           SVDL  TK
Sbjct: 126 SVDLSPTK 133

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816012|ref|XP_002875889.1| octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297321727|gb|EFH52148.1| octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 88/136 (64%), Positives = 104/136 (76%), Gaps = 2/136 (1%)

Query: 2   VVRVIESKNRAETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGE 61
           +V V E++    +LKFLCSYGG+ILPRS+DG+LRYVGG TRVLSV  SISF ELM+KL E
Sbjct: 1   MVAVAENQKTKNSLKFLCSYGGRILPRSIDGKLRYVGGFTRVLSVHHSISFTELMMKLEE 60

Query: 62  FCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASLKKVSP 121
           FCGYSV L+CQLPNGDLETLIS+KSD+DLAN++EEYDR     KIRAILSPP  +   S 
Sbjct: 61  FCGYSVELKCQLPNGDLETLISVKSDEDLANMVEEYDRVY-GGKIRAILSPPKQMSPRSS 119

Query: 122 PASVDLPATKQPVAAV 137
               DL + K P + V
Sbjct: 120 GGGGDL-SPKSPFSVV 134

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516637|ref|XP_003527000.1| PREDICTED: uncharacterized protein LOC100797123 [Glycine max]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/194 (53%), Positives = 124/194 (63%), Gaps = 16/194 (8%)

Query: 6   IESKNRAETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGY 65
           +ESK   +T+K LCSYGGKILPR+ DG+LRY GG TRVL+V RSISF+ELMVKL EFCG 
Sbjct: 1   MESKP-GQTIKLLCSYGGKILPRATDGELRYAGGHTRVLTVARSISFSELMVKLSEFCGS 59

Query: 66  SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRA----APSSKIRAILSPPASLKKVSP 121
           SV LRCQLP GDLETLISI +D+DLA++IEEYDRA    A   KI+A+LSPP S KK   
Sbjct: 60  SVILRCQLPKGDLETLISITNDEDLASIIEEYDRASLKLAHPLKIKAVLSPPKSSKKTPS 119

Query: 122 PASVDLPATKQPVAAVNHRSA-SRPFSP-PSIGYRCQPSSPPYGCPVSGKVCYYPCHLQG 179
             S    +     +   H S  S P++    IG   +P       P +   CY      G
Sbjct: 120 APSSASSSASHSPSRSPHTSTDSLPYAAYHRIGRHNRP-------PPAKASCY--TQFDG 170

Query: 180 TPRSLYYGPHNNYW 193
           +PR LY GPH NY+
Sbjct: 171 SPRFLYRGPHCNYY 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507288|ref|XP_003522400.1| PREDICTED: uncharacterized protein LOC100810563 [Glycine max]

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 128/195 (65%), Gaps = 10/195 (5%)

Query: 6   IESKNRAETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGY 65
           +ESK  A+T+K LCSYGGKILPR+ DG+LRYVGG TRVL+V+RSISF ELMVKL  FCG 
Sbjct: 1   MESKP-AQTIKLLCSYGGKILPRATDGELRYVGGHTRVLTVDRSISFPELMVKLRVFCGS 59

Query: 66  SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRA----APSSKIRAILSPPASLKKVSP 121
           SV LRCQLP GDLETLISI +D+DLA++IEEYDR+    A   KI+A+LSPP S+KK SP
Sbjct: 60  SVILRCQLPKGDLETLISITNDEDLASIIEEYDRSSLKLAHPLKIKAVLSPPKSMKKASP 119

Query: 122 PASVDLPATKQPVAAVNHRSASRPFSPPSIGYRC-QPSSPP--YGCPVSGKVCYYPCHLQ 178
             S    ++    +       S    P +  +R  + + PP  Y    +   CY      
Sbjct: 120 VPSSASASSSATHSPSGSPHTSTESLPYAAFHRIGRHNRPPVVYAIGAAKACCY--TQFD 177

Query: 179 GTPRSLYYGPHNNYW 193
           G+PR LY GPH NY+
Sbjct: 178 GSPRFLYRGPHCNYY 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793907|ref|XP_002864838.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297310673|gb|EFH41097.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/118 (70%), Positives = 97/118 (82%), Gaps = 1/118 (0%)

Query: 1   MVVRVIESKNRAETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLG 60
           MV      KN   +LKFLCSYGG+I PRS DG+LRYVGG TRVLSV+RSISF+ELM KL 
Sbjct: 1   MVAVDYTEKNSGSSLKFLCSYGGRIFPRSTDGKLRYVGGHTRVLSVDRSISFSELMKKLY 60

Query: 61  EFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASLKK 118
           EFCGYSV LRCQLPNGDLETLIS+KS+++LAN++EEYDR +  +KIRA+LSPP S  K
Sbjct: 61  EFCGYSVDLRCQLPNGDLETLISVKSEEELANIVEEYDRIS-GAKIRAVLSPPRSSHK 117

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228362|ref|NP_190407.1| octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis thaliana] gi|4678364|emb|CAB41174.1| putative protein [Arabidopsis thaliana] gi|48310282|gb|AAT41790.1| At3g48240 [Arabidopsis thaliana] gi|52218812|gb|AAU29476.1| At3g48240 [Arabidopsis thaliana] gi|332644869|gb|AEE78390.1| octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis thaliana]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 102/136 (75%), Gaps = 2/136 (1%)

Query: 2   VVRVIESKNRAETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGE 61
           +V V E++    +LKFLCSYGG+ILPRS+DG+LRYVGG TRVLSV  SISF EL +KL E
Sbjct: 1   MVAVAENQKTKNSLKFLCSYGGRILPRSIDGKLRYVGGFTRVLSVHHSISFTELTMKLEE 60

Query: 62  FCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASLKKVSP 121
           FCGYSV L+CQLPNGDLETLIS+KSD+DL N++EEYDR     KIRAILSPP  +   S 
Sbjct: 61  FCGYSVELKCQLPNGDLETLISVKSDEDLVNIVEEYDRVY-GGKIRAILSPPKQMSPRSS 119

Query: 122 PASVDLPATKQPVAAV 137
               DL + K P + V
Sbjct: 120 GGGGDL-SPKSPFSVV 134

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461819|ref|XP_003601191.1| hypothetical protein MTR_3g077030 [Medicago truncatula] gi|355490239|gb|AES71442.1| hypothetical protein MTR_3g077030 [Medicago truncatula]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 121/191 (63%), Gaps = 15/191 (7%)

Query: 12  AETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYSVTLRC 71
           + T+K L SYGGKI  RS DG+LRYVGG TRVL+V+RSISF+ELMVKL E CG SVTLRC
Sbjct: 6   SNTIKILYSYGGKIRLRSTDGELRYVGGHTRVLAVDRSISFSELMVKLEELCGSSVTLRC 65

Query: 72  QLPNGDLETLISIKSDDDLANLIEEYDRAAPS----SKIRAILSPPASLKKVSPPASVDL 127
           QLPNGDLETLISI +D+DL N+I+EY+RA+       KI+AILS P S  KVSP  S   
Sbjct: 66  QLPNGDLETLISITNDEDLTNIIDEYERASLKLTHPLKIKAILSQPKSSLKVSPDLSSSS 125

Query: 128 PATKQPVAAVNHRSA-SRPFSPP-SIGYRCQPSSPPYGCPVSG------KVCYYPCHLQG 179
                  A   H SA S P++    IG   +    P G  + G      K C Y   LQG
Sbjct: 126 SNASLSPARSPHTSAESLPYAVAYRIGRHSRSPRAPVGYSIGGVRNGSAKACCYMGQLQG 185

Query: 180 TPRS---LYYG 187
           +PRS   +YYG
Sbjct: 186 SPRSPRPVYYG 196

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2161907	192	AT5G63130 "AT5G63130" [Arabido	0.932	0.942	0.532	8.4e-42
TAIR|locus:2101175	180	AT3G48240 "AT3G48240" [Arabido	0.757	0.816	0.6	2e-40
TAIR|locus:2033595	174	AT1G70640 "AT1G70640" [Arabido	0.819	0.913	0.480	3.3e-31
TAIR|locus:2158839	288	AT5G49920 "AT5G49920" [Arabido	0.5	0.336	0.479	9.7e-22
TAIR|locus:2115658	477	AT4G05150 [Arabidopsis thalian	0.484	0.197	0.463	1.3e-20
TAIR|locus:2197788	1042	AT1G04700 [Arabidopsis thalian	0.515	0.095	0.485	1.8e-20
TAIR|locus:2088862	218	AT3G26510 [Arabidopsis thalian	0.706	0.628	0.413	2.7e-20
TAIR|locus:2179366	513	AT5G64430 "AT5G64430" [Arabido	0.520	0.196	0.459	5.4e-20
TAIR|locus:2038836	720	PDE331 "PIGMENT DEFECTIVE 331"	0.463	0.125	0.5	2.3e-19
TAIR|locus:2089648	666	AT3G18230 [Arabidopsis thalian	0.484	0.141	0.468	4.7e-19

TAIR|locus:2161907 AT5G63130 "AT5G63130" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 105/197 (53%), Positives = 128/197 (64%)

Query:     1 MVVRVIESKNRAETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLG 60
             MV      KN   +LKFLCSYGG+ILPRS DG+LRYVGG TRVLSV+RSISF+ELM KL 
Sbjct:     1 MVAVDYTEKNSGSSLKFLCSYGGRILPRSTDGKLRYVGGHTRVLSVDRSISFSELMKKLY 60

Query:    61 EFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASLKKV- 119
             EFCGYSV LRCQLPNGDLETLIS+KS+++LA ++EEYDR    +KIRA+LSPP S  K  
Sbjct:    61 EFCGYSVDLRCQLPNGDLETLISVKSEEELAEIVEEYDRIC-GAKIRAVLSPPRSSHKTE 119

Query:   120 SPPASVDLPATKQPVAAVNHRSASRPFSP-PSIG-YR----CQPSS--PP--YGCPVSGK 169
             S P+S    + K P +     + S P SP P+ G Y     C PS+  PP  Y       
Sbjct:   120 SSPSSSGDRSPKSPFSV----TPSPPNSPSPAYGRYLQSRYCLPSTDLPPRRYIQRAEES 175

Query:   170 VCYYPCHLQGTPRSLYY 186
              C Y C +    R +++
Sbjct:   176 HCCYACRVHKDSRLVWH 192

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2101175 AT3G48240 "AT3G48240" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 90/150 (60%), Positives = 108/150 (72%)

Query:     2 VVRVIESKNRAETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGE 61
             +V V E++    +LKFLCSYGG+ILPRS+DG+LRYVGG TRVLSV  SISF EL +KL E
Sbjct:     1 MVAVAENQKTKNSLKFLCSYGGRILPRSIDGKLRYVGGFTRVLSVHHSISFTELTMKLEE 60

Query:    62 FCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASLKKVSP 121
             FCGYSV L+CQLPNGDLETLIS+KSD+DL N++EEYDR     KIRAILSPP  +   S 
Sbjct:    61 FCGYSVELKCQLPNGDLETLISVKSDEDLVNIVEEYDRVY-GGKIRAILSPPKQMSPRSS 119

Query:   122 PASVDLPATKQPVAAVNHRSASRP-FSPPS 150
                 DL + K P + V   S  R   +PP+
Sbjct:   120 GGGGDL-SPKSPFSVVASPSPPRYCVAPPT 148

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2033595 AT1G70640 "AT1G70640" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 86/179 (48%), Positives = 107/179 (59%)

Query:    14 TLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYSVT-LRCQ 72
             T+KFLCSYGG+I PR  DG+LRY GG TRVLSV R+ISF EL  KLGE CG +VT LRCQ
Sbjct:     7 TVKFLCSYGGRITPRYPDGKLRYQGGDTRVLSVTRAISFTELKKKLGEICGIAVTSLRCQ 66

Query:    73 LPNGDLETLISIKSDDDLANLIEEYDRAAPSS-KIRAILSPPASLKKVSPPASVDLPATK 131
             LP  DL+ L++++SD+DL NL+EEYD A  +  KI   LSP   LK     A+   P   
Sbjct:    67 LPTDDLDALVTVRSDEDLKNLMEEYDLAITAQVKIHVFLSP---LKSTRTTANSSPP--- 120

Query:   132 QPVAAVNHRSASRPFSPPSIGYRCQPSSPPYGCP--VSGKVCYYPCHLQGTP--RSLYY 186
              P    +  S SR  SPPS      PS+P   CP  V   +    C++  +P    LY+
Sbjct:   121 -PSTTSSSSSKSRSRSPPS------PSTPET-CPSCVERSIRNNGCYVHRSPSHNQLYF 171

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2158839 AT5G49920 "AT5G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 9.7e-22, Sum P(2) = 9.7e-22
 Identities = 47/98 (47%), Positives = 68/98 (69%)

Query:    15 LKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLP 74
             +KF+CS+GG+ILPR  D  L+YVGG TRV++V   ISF+ELM KL       + L+ Q+ 
Sbjct:    10 VKFMCSFGGRILPRPSDSVLKYVGGETRVVAVSPDISFSELMKKLTAITENDIVLKYQII 69

Query:    75 NGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP 112
               DL+ L+S+KSD+D+ ++IEEY+R   + K+R  L P
Sbjct:    70 PEDLDALVSVKSDEDVKHMIEEYNRHE-TPKLRTFLFP 106

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2115658 AT4G05150 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
 Identities = 44/95 (46%), Positives = 69/95 (72%)

Query:    15 LKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYS-VTLRCQL 73
             ++F+C++GG+ILPR  D QL YVGG  R+++V R  +FA L+ KL +  G S ++++ QL
Sbjct:    59 VRFMCTFGGRILPRPPDNQLCYVGGDNRMVAVHRHTTFASLLSKLAKLSGKSNISVKYQL 118

Query:    74 PNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRA 108
             PN DL+ LIS+ +D+D+ N+++EYDR A +   RA
Sbjct:   119 PNEDLDALISVSTDEDVENMMDEYDRVAQNQNPRA 153

GO:0005634 "nucleus" evidence=ISM

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2197788 AT1G04700 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
 Identities = 50/103 (48%), Positives = 68/103 (66%)

Query:    13 ETLKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQ 72
             E LK LCS+GG+IL R  DG+LRY+GG TR++S+ + +   ELM K    C +  T++ Q
Sbjct:   120 EVLKLLCSFGGRILQRPGDGKLRYIGGETRIISIRKHVGLNELMHKTYALCNHPHTIKYQ 179

Query:    73 LPNGDLETLISIKSDDDLANLIEEYDRA---APSSKIRAILSP 112
             LP  DL+ LIS+ SD+DL ++IEEY  A   A S +IR  L P
Sbjct:   180 LPGEDLDALISVCSDEDLLHMIEEYQEAETKAGSQRIRVFLVP 222

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2088862 AT3G26510 [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 62/150 (41%), Positives = 84/150 (56%)

Query:    54 ELMVKLGEFCG-----YSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSS--KI 106
             EL  K+ E CG      +VT+RCQLP  DL+ L+SI SD+DL NLIEEYD  + SS  KI
Sbjct:    71 ELASKMAEMCGGVGGSITVTIRCQLPTEDLDALVSITSDEDLVNLIEEYDLVSSSSPMKI 130

Query:   107 RAILSPPASL--KKVSPPASVDLPA-TKQPVAAVNHRSASRPFSPPSIGYRCQPSSPPYG 163
             R  L+PP S    K SPP  + LP+ T    ++    ++S P SP S+     P SPP  
Sbjct:   131 RVFLNPPKSAAGSKKSPPP-LALPSSTTTSSSSTTSSTSSSPRSP-SLSKPPLPPSPPRI 188

Query:   164 CPVSGKVCYYPCHLQGTPRSLYYGPHNNYW 193
               V+   CY  C++    R++Y   + N+W
Sbjct:   189 TTVTKNPCY-GCYVHRNSRNIYLVHNGNHW 217

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2179366 AT5G64430 "AT5G64430" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
 Identities = 51/111 (45%), Positives = 69/111 (62%)

Query:    15 LKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYS------VT 68
             +KF+CSYGGKI PR  D QL YV G T++LSV+R I F  L  KL   CG        VT
Sbjct:    45 VKFMCSYGGKIQPRPHDNQLTYVNGETKILSVDRGIRFPVLASKLSTVCGGGDGGGGEVT 104

Query:    69 LRCQLPNGDLETLISIKSDDDLANLIEEYDR----AAPSSKIRAILSPPAS 115
              + QLP  DL+ LIS+ +DDDL +++ EYDR    ++  +++R  L P +S
Sbjct:   105 FKYQLPGEDLDALISVTNDDDLEHMMHEYDRLLRLSSKPARMRLFLFPASS 155

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2038836 PDE331 "PIGMENT DEFECTIVE 331" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
 Identities = 46/92 (50%), Positives = 64/92 (69%)

Query:    15 LKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFC--GYSVTLRCQ 72
             L+F+CSYGG ILPR  D  L Y+GG TR++ V+R+ S   L+ +L      G S TL+ Q
Sbjct:    75 LRFMCSYGGHILPRPHDKSLCYMGGDTRIVVVDRNSSLPSLIARLSNTLLDGRSFTLKYQ 134

Query:    73 LPNGDLETLISIKSDDDLANLIEEYDRAAPSS 104
             LP+ DL++LIS+ +D+DL N+IEEYDR   +S
Sbjct:   135 LPSEDLDSLISVTTDEDLDNMIEEYDRTISAS 166

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2089648 AT3G18230 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 4.7e-19, Sum P(2) = 4.7e-19
 Identities = 45/96 (46%), Positives = 64/96 (66%)

Query:    15 LKFLCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFC--GYSVTLRCQ 72
             L+ +CS+GG I+PR  D  L Y GG TR++ V+R  S + L  +L      G S TL+ Q
Sbjct:    64 LRLMCSFGGHIMPRPHDKSLTYSGGETRIVVVDRRASLSSLRSRLSSMLLNGRSFTLKYQ 123

Query:    73 LPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRA 108
             LP+ DL++L++I +D+DL N+IEEYDRAA S+   A
Sbjct:   124 LPSEDLDSLVTITTDEDLENMIEEYDRAASSATATA 159

GO:0009507 "chloroplast" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
cd06410	97	cd06410, PB1_UP2, Uncharacterized protein 2	7e-42
pfam00564	84	pfam00564, PB1, PB1 domain	2e-18
smart00666	81	smart00666, PB1, PB1 domain	1e-15
cd05992	81	cd05992, PB1, The PB1 domain is a modular domain m	6e-15
cd06405	79	cd06405, PB1_Mekk2_3, The PB1 domain is present in	0.001

>gnl|CDD|99731 cd06410, PB1_UP2, Uncharacterized protein 2

 Score =  135 bits (343), Expect = 7e-42
 Identities = 57/96 (59%), Positives = 74/96 (77%), Gaps = 3/96 (3%)

Query: 18  LCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCG--YSVTLRCQLPN 75
           LCSYGG+ILPR  DGQLRYVGG TR++SV+RSISF EL+ KL E  G    VTL+ QLP+
Sbjct: 1   LCSYGGRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPD 60

Query: 76  GDLETLISIKSDDDLANLIEEYDRAA-PSSKIRAIL 110
            DL+ LIS+ +D+DL N++EEYDR +  S+++R  L
Sbjct: 61  EDLDALISVSNDEDLKNMMEEYDRLSGGSARLRVFL 96

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. Length = 97

>gnl|CDD|215996 pfam00564, PB1, PB1 domain

 Score = 75.8 bits (187), Expect = 2e-18
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 29  SMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYS-VTLRCQLPNGDLETLISIKSD 87
           ++  +LRY GG+ R LSV   ISF EL  K+ +  G   V  + + P+ D + L+SI SD
Sbjct: 1   TVRVKLRYGGGIRRFLSVSPGISFEELRSKVEQRFGLDRVDFKLKYPDEDGD-LVSITSD 59

Query: 88  DDLANLIEEYDRAAPSSKIRAILSP 112
           +DL   IEE      S  +R  + P
Sbjct: 60  EDLEEAIEEARS-LGSKTLRLHVFP 83

Length = 84

>gnl|CDD|214770 smart00666, PB1, PB1 domain

 Score = 68.4 bits (168), Expect = 1e-15
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 8/82 (9%)

Query: 29  SMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQLPNGDLETLISIK 85
           ++D +LRY GG TR LSV R ISF +L  K+ +  G      TL+ Q  +GD   L+S+ 
Sbjct: 1   TVDVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGD---LVSLT 56

Query: 86  SDDDLANLIEEYDRAAPSSKIR 107
           SD+DL   IEEYD    S K+R
Sbjct: 57  SDEDLEEAIEEYDS-LGSKKLR 77

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. Length = 81

>gnl|CDD|99716 cd05992, PB1, The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

 Score = 66.1 bits (162), Expect = 6e-15
 Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 3/78 (3%)

Query: 31  DGQLRYVGGLTRVLSVERSISFAELMVKLGEFCG-YSVTLRCQLPNGDLETLISIKSDDD 89
             +++Y G + R + V RSISF +L  K+ E  G  +V+ + + P+ D + L++I SD+D
Sbjct: 2   RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGD-LVTISSDED 60

Query: 90  LANLIEEYDRAAPSSKIR 107
           L   IEE  R + S K+R
Sbjct: 61  LEEAIEEARR-SGSKKLR 77

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. Length = 81

>gnl|CDD|99726 cd06405, PB1_Mekk2_3, The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 39  GLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYD 98
           G  R++   R + F +L  K+    G  + L         E LI +K+ +DL   IE  D
Sbjct: 9   GEKRIIQFPRPVKFKDLQQKVTTAFGQPMDLHYTNN----ELLIPLKNQEDLDRAIELLD 64

Query: 99  RAAPSSKIRAILSPP 113
           R+     +R +LS P
Sbjct: 65  RSPHMKSLRILLSAP 79

The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The MEKK2 and MEKK3 proteins contain a type II PB1 domain. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
cd06410	97	PB1_UP2 Uncharacterized protein 2. The PB1 domain	100.0
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	99.47
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	99.1
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	99.09
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	98.78
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	98.35
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	98.31
cd06405	79	PB1_Mekk2_3 The PB1 domain is present in the two m	98.25
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	98.09
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	98.06
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	98.05
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	97.57
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	97.43
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	97.2
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	96.92
cd06399	92	PB1_P40 The PB1 domain is essential part of the p4	96.46
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	96.4
cd06411	78	PB1_p51 The PB1 domain is present in the p51 prote	95.6
cd06395	91	PB1_Map2k5 PB1 domain is essential part of the mit	91.79
KOG0695	593	consensus Serine/threonine protein kinase [Signal	87.64
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	84.83
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	83.87

>cd06410 PB1_UP2 Uncharacterized protein 2

Probab=100.00  E-value=2e-43  Score=268.97  Aligned_cols=94  Identities=61%  Similarity=1.016  Sum_probs=90.5

Q ss_pred             EeeeCCEeeeCCCCCCeEeecCceEEEEecCCCCHHHHHHHHHhhcCCc--EEEEeecCCCCCCcEEeecChhHHHHHHH
Q 029397           18 LCSYGGKILPRSMDGQLRYVGGLTRVLSVERSISFAELMVKLGEFCGYS--VTLRCQLPNGDLETLISIKSDDDLANLIE   95 (194)
Q Consensus        18 mCSyGG~I~PRp~Dg~LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~--v~lKYQLP~edLDaLISVssDeDL~nM~e   95 (194)
                      ||||||+|+||++||+|+|+|||||||+|+|+++|+||++||+++++.+  ++||||||+||||+||||++||||+|||+
T Consensus         1 ~cs~GG~i~pr~~dg~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl~~M~~   80 (97)
T cd06410           1 LCSYGGRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDLKNMME   80 (97)
T ss_pred             CcccCCEEeCcCCCCCEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999885  59999999999999999999999999999


Q ss_pred             HHhhhCC-CCceEEEEe
Q 029397           96 EYDRAAP-SSKIRAILS  111 (194)
Q Consensus        96 EYdr~~~-s~rlRvFLF  111 (194)
                      ||+++.. ++|||+|||
T Consensus        81 e~~~~~~~~~rirvflf   97 (97)
T cd06410          81 EYDRLSGGSARLRVFLF   97 (97)
T ss_pred             hhccccCCCceEEEEEC
Confidence            9999853 899999998

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>smart00666 PB1 PB1 domain

Probab=99.47  E-value=5.1e-13  Score=94.73  Aligned_cols=75  Identities=48%  Similarity=0.671  Sum_probs=66.4

Q ss_pred             CCeEeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEE
Q 029397           32 GQLRYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRA  108 (194)
Q Consensus        32 g~LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRv  108 (194)
                      .|++| ||++|.+.|+++++|.||+.++.+.++.   .+.|||+  +||-| +|++++|+||..||+.+.+.. ...+|+
T Consensus         4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~--Dedgd-~v~l~sd~Dl~~a~~~~~~~~-~~~l~l   78 (81)
T smart00666        4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ--DEDGD-LVSLTSDEDLEEAIEEYDSLG-SKKLRL   78 (81)
T ss_pred             EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE--CCCCC-EEEecCHHHHHHHHHHHHHcC-CceEEE
Confidence            56788 9999999999999999999999999987   6999999  67645 999999999999999998753 467888


Q ss_pred             EEe
Q 029397          109 ILS  111 (194)
Q Consensus       109 FLF  111 (194)
                      ++|
T Consensus        79 ~v~   81 (81)
T smart00666       79 HVF   81 (81)
T ss_pred             EeC
Confidence            875

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=99.10  E-value=7.6e-10  Score=77.89  Aligned_cols=74  Identities=39%  Similarity=0.562  Sum_probs=59.1

Q ss_pred             CeEeecCceEEEEec-CCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEE
Q 029397           33 QLRYVGGLTRVLSVE-RSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRA  108 (194)
Q Consensus        33 ~LrYvGGeTRIi~V~-Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRv  108 (194)
                      |++|. |++|.+.++ ++++|.+|++++.+.++.   .+.|||.  +|| ..+|++++|+||+.|++.+.+ ....++++
T Consensus         4 K~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~--D~e-~d~v~l~sd~Dl~~a~~~~~~-~~~~~l~l   78 (81)
T cd05992           4 KVKYG-GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP--DED-GDLVTISSDEDLEEAIEEARR-SGSKKLRL   78 (81)
T ss_pred             EEEec-CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee--CCC-CCEEEeCCHHHHHHHHHHHhh-cCCccEEE
Confidence            45555 567777777 999999999999999987   4556665  455 368999999999999999986 23678888


Q ss_pred             EEe
Q 029397          109 ILS  111 (194)
Q Consensus       109 FLF  111 (194)
                      +++
T Consensus        79 ~v~   81 (81)
T cd05992          79 FVF   81 (81)
T ss_pred             EeC
Confidence            874

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=99.09  E-value=9.2e-10  Score=77.93  Aligned_cols=75  Identities=31%  Similarity=0.554  Sum_probs=62.0

Q ss_pred             eEeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEE
Q 029397           34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL  110 (194)
Q Consensus        34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFL  110 (194)
                      ++|.|+..|++.++++++|.+|+.++++.++.   .+.|+|+  +|| ..+|+|++|+||..|++++.+. ...++|||+
T Consensus         6 ~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~--D~d-gD~V~i~sd~Dl~~a~~~~~~~-~~~~lrl~v   81 (84)
T PF00564_consen    6 VRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK--DED-GDLVTISSDEDLQEAIEQAKES-GSKTLRLFV   81 (84)
T ss_dssp             EEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE--ETT-SSEEEESSHHHHHHHHHHHHHC-TTSCEEEEE
T ss_pred             EEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee--CCC-CCEEEeCCHHHHHHHHHHHHhc-CCCcEEEEE
Confidence            44544444569999999999999999999987   6888887  555 4799999999999999999986 355999998


Q ss_pred             eC
Q 029397          111 SP  112 (194)
Q Consensus       111 Fp  112 (194)
                      ..
T Consensus        82 ~~   83 (84)
T PF00564_consen   82 QD   83 (84)
T ss_dssp             EE
T ss_pred             Ee
Confidence            63

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=98.78  E-value=7.1e-08  Score=71.69  Aligned_cols=70  Identities=23%  Similarity=0.346  Sum_probs=61.5

Q ss_pred             cCceEEEEecCCCCHHHHHHHHHhhcCC----cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397           38 GGLTRVLSVERSISFAELMVKLGEFCGY----SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS  111 (194)
Q Consensus        38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~----~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF  111 (194)
                      |||++.+.++.+++|.+|+.++++.|+.    .+.|||.  +|| ...|+++||+||+.=++-|... ...++|+|+-
T Consensus         8 ~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~--Dde-gd~v~ltsd~DL~eai~i~~~~-~~~~v~l~v~   81 (82)
T cd06407           8 GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL--DDD-EEWVLLTCDADLEECIDVYRSS-GSHTIRLLVH   81 (82)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE--CCC-CCeEEeecHHHHHHHHHHHHHC-CCCeEEEEee
Confidence            8899999999999999999999999874    6999998  444 6799999999999999877654 5899999973

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=98.35  E-value=2.4e-06  Score=64.94  Aligned_cols=69  Identities=19%  Similarity=0.302  Sum_probs=57.7

Q ss_pred             cCceEEEEecCCCCHHHHHHHHHhhcCC--cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhC-----CCCceEEEE
Q 029397           38 GGLTRVLSVERSISFAELMVKLGEFCGY--SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAA-----PSSKIRAIL  110 (194)
Q Consensus        38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~--~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~-----~s~rlRvFL  110 (194)
                      +||+++|.|+.+|+|.+|..|+.+.|+.  .++|||+=.    ...|++++++||+--|.-.....     .-+|+-+.+
T Consensus        10 ~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDE----GD~iti~sq~DLd~Ai~~a~~~~~~~~~~~~~~e~w~   85 (86)
T cd06408          10 QDDTRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDD----GDMITMGDQDDLDMAIDTARSEARKQGSDMGKLEIWV   85 (86)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcC----CCCccccCHHHHHHHHHHHHHHHHhhcccccceeeec
Confidence            7899999999999999999999999987  799999833    57999999999999997665321     246776654

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=98.31  E-value=8.5e-06  Score=61.82  Aligned_cols=74  Identities=19%  Similarity=0.400  Sum_probs=61.2

Q ss_pred             eEeecCceEEEEecC-----CCCHHHHHHHHHhhcCC----cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCC
Q 029397           34 LRYVGGLTRVLSVER-----SISFAELMVKLGEFCGY----SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSS  104 (194)
Q Consensus        34 LrYvGGeTRIi~V~R-----sisf~eL~~kLs~l~g~----~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~  104 (194)
                      ..| ||++|-+.++.     +++|.+|..|+++.++.    .+.|||.  +|| ..+|.++||+||+.-|+...+.++..
T Consensus         5 v~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~--Ded-gd~V~l~~D~DL~~a~~~~~~~~~~~   80 (91)
T cd06398           5 VKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT--DED-GDVVTLVDDNDLTDAIQYFCSGSRLN   80 (91)
T ss_pred             EEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE--CCC-CCEEEEccHHHHHHHHHHHhccCCCc
Confidence            344 88899999995     79999999999999865    6889997  444 67999999999999998866666678


Q ss_pred             ceEEEEe
Q 029397          105 KIRAILS  111 (194)
Q Consensus       105 rlRvFLF  111 (194)
                      -||+++-
T Consensus        81 ~lrl~v~   87 (91)
T cd06398          81 PLRIDVT   87 (91)
T ss_pred             eEEEEEE
Confidence            8888774

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development

Probab=98.25  E-value=7.5e-06  Score=61.73  Aligned_cols=70  Identities=30%  Similarity=0.474  Sum_probs=60.8

Q ss_pred             cCceEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397           38 GGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS  111 (194)
Q Consensus        38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF  111 (194)
                      -||.|||.++|.+.|.||..|+.+.||+.+.+-|-.=    .-||-+.|.|||+.-||-.|+...-.-+|+.|.
T Consensus         8 ~gEKRIi~f~RPvkf~dl~~kv~~afGq~mdl~ytn~----eL~iPl~~Q~DLDkAie~ld~s~~~ksLRilL~   77 (79)
T cd06405           8 NGEKRIIQFPRPVKFKDLQQKVTTAFGQPMDLHYTNN----ELLIPLKNQEDLDRAIELLDRSPHMKSLRILLS   77 (79)
T ss_pred             cCceEEEecCCCccHHHHHHHHHHHhCCeeeEEEecc----cEEEeccCHHHHHHHHHHHccCccccceeEeEe
Confidence            4899999999999999999999999999999988732    379999999999999999998544556777764

The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=98.09  E-value=3.4e-05  Score=58.12  Aligned_cols=69  Identities=10%  Similarity=0.220  Sum_probs=59.5

Q ss_pred             cCceEEEEecC--CCCHHHHHHHHHhhcCC-cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397           38 GGLTRVLSVER--SISFAELMVKLGEFCGY-SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS  111 (194)
Q Consensus        38 GGeTRIi~V~R--sisf~eL~~kLs~l~g~-~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF  111 (194)
                      |||+..+.++.  +++|.+|.+.+++.|+. .+.|||-  +|| .--|+++||.||+.-++-|.+-  +..||+++.
T Consensus         8 ~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~~f~lKYl--Dde-~e~v~lssd~eLeE~~rl~~~~--~~~l~~~v~   79 (81)
T cd06396           8 NGESQSFLVSDSENTTWASVEAMVKVSFGLNDIQIKYV--DEE-NEEVSVNSQGEYEEALKSAVRQ--GNLLQMNVY   79 (81)
T ss_pred             CCeEEEEEecCCCCCCHHHHHHHHHHHhCCCcceeEEE--cCC-CCEEEEEchhhHHHHHHHHHhC--CCEEEEEEe
Confidence            68888999999  88999999999999987 7889996  555 6789999999999988888873  678888874

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=98.06  E-value=2.1e-05  Score=59.46  Aligned_cols=66  Identities=23%  Similarity=0.372  Sum_probs=52.4

Q ss_pred             cCceEEEEecC-CCCHHHHHHHHHhhcCC------cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEE
Q 029397           38 GGLTRVLSVER-SISFAELMVKLGEFCGY------SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL  110 (194)
Q Consensus        38 GGeTRIi~V~R-sisf~eL~~kLs~l~g~------~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFL  110 (194)
                      |||.|.+.++. .++|.||+..+..+++.      +|.|||.=+.+|   ||+|++++||.--+ .+.   ...|+++|+
T Consensus         8 g~DiR~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGD---lVTIts~~dL~~A~-~~~---~~~~l~~~~   80 (81)
T cd06401           8 GDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGD---LITIFDSSDLSFAI-QCS---RILKLTLFV   80 (81)
T ss_pred             CCeEEEEeccCccccHHHHHHHHHHHhccccCCcccEEEEEECCCCC---EEEeccHHHHHHHH-hcC---cceEEEEec
Confidence            99999999998 48999999999877752      799999955555   99999999998652 222   256777764

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=98.05  E-value=4.6e-05  Score=57.92  Aligned_cols=72  Identities=24%  Similarity=0.374  Sum_probs=59.5

Q ss_pred             ecCceEEEEecCCCCHHHHHHHHHhhcCC----cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397           37 VGGLTRVLSVERSISFAELMVKLGEFCGY----SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP  112 (194)
Q Consensus        37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~----~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp  112 (194)
                      -+|+-+|..++.+++|.+|..|+.++|..    +|++||-=..+   -+|++++|++|+.-+.-|.... ..-|-+-+||
T Consensus         7 y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEG---Dp~tiSS~~EL~EA~rl~~~n~-~~~l~ihvfp   82 (83)
T cd06404           7 YNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEG---DPCTISSQMELEEAFRLYELNK-DSELNIHVFP   82 (83)
T ss_pred             ecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCC---CceeecCHHHHHHHHHHHHhcC-cccEEEEecC
Confidence            47888999999999999999999999965    79999984444   4899999999998888887543 4466677776

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=97.57  E-value=0.00062  Score=51.80  Aligned_cols=65  Identities=18%  Similarity=0.323  Sum_probs=52.0

Q ss_pred             ceEEEEecCC--CCHHHHHHHHHhhcC----CcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397           40 LTRVLSVERS--ISFAELMVKLGEFCG----YSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS  111 (194)
Q Consensus        40 eTRIi~V~Rs--isf~eL~~kLs~l~g----~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF  111 (194)
                      |-|-++++..  ++|.+|+.++.++|.    ..|+|||.=..+|   ||+|+|||||.--+...+    .+-+|+|+-
T Consensus        15 EIRRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGD---lvtIssdeEL~~A~~~~~----~~~~RlyI~   85 (87)
T cd06402          15 EIRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGD---LVAFSSDEELVMALGSLN----DDTFRIYIK   85 (87)
T ss_pred             ceEEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECCCCC---EEeecCHHHHHHHHHcCC----CCcEEEEEE
Confidence            5677788555  689999999999984    3899999844444   999999999998877654    377888873

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=97.43  E-value=0.0007  Score=51.54  Aligned_cols=59  Identities=20%  Similarity=0.272  Sum_probs=49.4

Q ss_pred             cCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhh
Q 029397           38 GGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDR   99 (194)
Q Consensus        38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr   99 (194)
                      ||+||=+.+++.-+|.+|.+||..++..   ++.|+|-  +|| .-+|++++|+||++.+....+
T Consensus         8 ~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi--DeD-~D~ITlssd~eL~d~~~~~~~   69 (82)
T cd06397           8 LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI--DND-NDEITLSSNKELQDFYRLSHR   69 (82)
T ss_pred             CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE--cCC-CCEEEecchHHHHHHHHhccc
Confidence            5677777899999999999999999976   5889996  444 369999999999987765554

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=97.20  E-value=0.0036  Score=47.54  Aligned_cols=67  Identities=19%  Similarity=0.361  Sum_probs=55.7

Q ss_pred             eecCceEEEEecCC--CCHHHHHHHHHhhc---CCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEE
Q 029397           36 YVGGLTRVLSVERS--ISFAELMVKLGEFC---GYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL  110 (194)
Q Consensus        36 YvGGeTRIi~V~Rs--isf~eL~~kLs~l~---g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFL  110 (194)
                      +-|+|.|=.+++|+  .+|.||.+.|..+.   +.++.|+|.=|++|   |+.|+|||.+..-+.-     ...-+|+|+
T Consensus         6 kfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~gD---LLPInNDdNf~kAlss-----a~plLRl~i   77 (80)
T cd06403           6 KFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDPHGD---LLPINNDDNFLKALSS-----ANPLLRIFI   77 (80)
T ss_pred             ccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCCCCC---EecccCcHHHHHHHHc-----CCCceEEEE
Confidence            56899999999998  89999999888876   44899999999776   8999999998876651     256788886

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=96.92  E-value=0.0034  Score=47.41  Aligned_cols=60  Identities=18%  Similarity=0.306  Sum_probs=47.7

Q ss_pred             CeEeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHH
Q 029397           33 QLRYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEY   97 (194)
Q Consensus        33 ~LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEY   97 (194)
                      |++|-+  |-+|.|+++++|++|..|+++-.+.   .+.|.|.=...  ..++.+ +|+||+.++.--
T Consensus         6 KV~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s--~~~v~l-~d~dle~aws~~   68 (80)
T cd06406           6 KVHFKY--TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEAS--GEDVIL-SDTNMEDVWSQA   68 (80)
T ss_pred             EEEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCC--CCccCc-ChHHHHHHHHhh
Confidence            467776  9999999999999999999997654   57788884433  356777 899999988643

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis

Probab=96.46  E-value=0.015  Score=45.26  Aligned_cols=60  Identities=22%  Similarity=0.288  Sum_probs=52.3

Q ss_pred             cCceEEEEecCCC----CHHHHHHHHHhhcCC-cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhh
Q 029397           38 GGLTRVLSVERSI----SFAELMVKLGEFCGY-SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRA  100 (194)
Q Consensus        38 GGeTRIi~V~Rsi----sf~eL~~kLs~l~g~-~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~  100 (194)
                      |-++|=|.|..++    +|.||...+..-++. ++.|.|+=+.+|   ||-+-+|||+.-||+|-..+
T Consensus        12 ~~~~rdi~vee~l~~~P~~kdLl~lmr~~f~~~dIaLNYrD~EGD---LIRllddeDv~LMV~~~r~~   76 (92)
T cd06399          12 ISTIRDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGD---LIRLLSDEDVALMVRQSRGL   76 (92)
T ss_pred             CccccceEeecccccCccHHHHHHHHHHHhchhheeeeeecCCCC---EEEEcchhhHHHHHHHHhcC
Confidence            5577889998887    589999999998876 899999988877   89999999999999998655

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=96.40  E-value=0.036  Score=42.19  Aligned_cols=70  Identities=21%  Similarity=0.219  Sum_probs=56.0

Q ss_pred             cCceEEEEecCCCCHHHHHHHHHhhcCCc------EEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397           38 GGLTRVLSVERSISFAELMVKLGEFCGYS------VTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS  111 (194)
Q Consensus        38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~------v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF  111 (194)
                      .|.++=+.+..+.++.+|+..+++-+|.+      +.|||-  ++| .-.|++|||.||..-|+-+... ..-++|+||-
T Consensus         9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl--DDE-gD~VllT~D~DL~e~v~iar~~-g~~~v~L~v~   84 (86)
T cd06409           9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV--DDE-GDIVLITSDSDLVAAVLVARSA-GLKKLDLHLH   84 (86)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE--cCC-CCEEEEeccchHHHHHHHHHHc-CCCEEEEEEe
Confidence            57788888888999999999999988653      568885  222 4689999999999999877654 4678998874

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein

Probab=95.60  E-value=0.056  Score=40.78  Aligned_cols=55  Identities=18%  Similarity=0.239  Sum_probs=47.3

Q ss_pred             eEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHH
Q 029397           41 TRVLSVERSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEE   96 (194)
Q Consensus        41 TRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eE   96 (194)
                      |-+|.|++..++++|+.+|++....   ...|-|.-|+++ ..||-++.+||++.++.-
T Consensus         8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~-~~~v~l~~e~~me~aW~~   65 (78)
T cd06411           8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGED-GHWVPISGEESLQRAWQD   65 (78)
T ss_pred             EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCC-ccEeecCcchHHHHHHHh
Confidence            7789999999999999999997765   578999988875 478999989999888753

p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo

>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development

Probab=91.79  E-value=0.43  Score=37.02  Aligned_cols=50  Identities=14%  Similarity=0.379  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHhhcCCc--EEEEeecCCCCCCcEEeecChhHHHHHHHHHhhh
Q 029397           48 RSISFAELMVKLGEFCGYS--VTLRCQLPNGDLETLISIKSDDDLANLIEEYDRA  100 (194)
Q Consensus        48 Rsisf~eL~~kLs~l~g~~--v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~  100 (194)
                      ..++|.|+..-++....-.  -.|.|.  +|| ..=|+|.+||+++.||..|..+
T Consensus        21 ~~L~F~DvL~~I~~vlp~aT~tAFeYE--DE~-gDRITVRSDeEm~AMlsyy~~~   72 (91)
T cd06395          21 PQLLFRDVLDVIGQVLPEATTTAFEYE--DED-GDRITVRSDEEMKAMLSYYCST   72 (91)
T ss_pred             ccccHHHHHHHHHHhcccccccceeec--ccc-CCeeEecchHHHHHHHHHHHHH
Confidence            5689999999999988652  347775  666 4469999999999999988654

The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=87.64  E-value=6.5  Score=38.18  Aligned_cols=84  Identities=17%  Similarity=0.247  Sum_probs=63.1

Q ss_pred             eecCceEEEEecCCCCHHHHHHHHHhhcCC----cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397           36 YVGGLTRVLSVERSISFAELMVKLGEFCGY----SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS  111 (194)
Q Consensus        36 YvGGeTRIi~V~Rsisf~eL~~kLs~l~g~----~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF  111 (194)
                      |-+|+--|..++..++|.+|...+..+|..    .+++|+-  +|| ..=++|++.-+|+.-+.-|. .+..+-|-+-+|
T Consensus        21 ~y~g~i~i~~~~p~~~~e~~~~~vrd~c~~h~~q~~t~kwi--dee-gdp~tv~sqmeleea~r~~~-~~~d~el~ihvf   96 (593)
T KOG0695|consen   21 HYGGDIFITSVDPATTFEELCEEVRDMCRLHQQQPLTLKWI--DEE-GDPCTVSSQMELEEAFRLAR-QCRDEELIIHVF   96 (593)
T ss_pred             eecCcEEEEeccCcccHHHHHHHHHHHHHHhhcCCceeEee--cCC-CCcceechhhhHHHHHHHHH-hccccceEEEEc
Confidence            334455588999999999999999999964    7889985  555 34689999988877665554 344678889999


Q ss_pred             CCCCCCCcCCCC
Q 029397          112 PPASLKKVSPPA  123 (194)
Q Consensus       112 p~~~~~~~s~~~  123 (194)
                      |.++...--|-+
T Consensus        97 ~~~pe~pglpc~  108 (593)
T KOG0695|consen   97 PSTPEQPGLPCP  108 (593)
T ss_pred             cCCCCCCCCCCC
Confidence            988877544433

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=84.83  E-value=3.1  Score=28.17  Aligned_cols=38  Identities=24%  Similarity=0.370  Sum_probs=31.5

Q ss_pred             eEeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEee
Q 029397           34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQ   72 (194)
Q Consensus        34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQ   72 (194)
                      +++ +|++.-+.|+.+.+..+|+.++++..|.+   ..|.|.
T Consensus         5 vk~-~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~   45 (71)
T cd01812           5 VKH-GGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK   45 (71)
T ss_pred             EEE-CCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC
Confidence            456 48888899999999999999999998873   566665

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=83.87  E-value=3.5  Score=29.84  Aligned_cols=29  Identities=28%  Similarity=0.415  Sum_probs=25.3

Q ss_pred             EEecCCCCHHHHHHHHHhhcCC---cEEEEee
Q 029397           44 LSVERSISFAELMVKLGEFCGY---SVTLRCQ   72 (194)
Q Consensus        44 i~V~Rsisf~eL~~kLs~l~g~---~v~lKYQ   72 (194)
                      +.++.+++..||+.||..++|.   .+.|.|.
T Consensus        18 kr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~   49 (87)
T PF14560_consen   18 KRFPKSITVSELKQKLEKLTGIPPSDMRLQLK   49 (87)
T ss_dssp             EEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred             EEcCCCCCHHHHHHHHHHHhCCCcccEEEEEE
Confidence            6799999999999999999998   4677664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
2cu1_A	103	Mitogen-activated protein kinase kinase kinase 2;	99.74
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	98.89
2jrh_A	94	Mitogen-activated protein kinase kinase kinase 3;	98.35
2npt_B	100	Mitogen-activated protein kinase kinase kinase 2;	98.28
2c60_A	111	Human mitogen-activated protein kinase kinase kina	98.27
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	98.18
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	98.13
1pqs_A	77	Cell division control protein 24; alpha and beta p	98.0
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	97.94
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	97.44
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	97.4
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	97.2
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	96.91
1wj6_A	101	KIAA0049 protein, RSGI RUH-024; PB1 domain, protei	96.79
1ip9_A	85	BEM1 protein; ubiquitin alpha/beta roll, signaling	96.06
2npt_A	106	Dual specificity mitogen-activated protein kinase;	91.58
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	91.54

>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=99.74  E-value=1.1e-17  Score=129.10  Aligned_cols=79  Identities=24%  Similarity=0.344  Sum_probs=72.3

Q ss_pred             ecCceEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeCCCCC
Q 029397           37 VGGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPASL  116 (194)
Q Consensus        37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp~~~~  116 (194)
                      .+||+|||.|+|.++|.||..|+.++||..+.|.|+    +++.||+++|+|||++.||+|||.....-||+||.+++..
T Consensus        15 ~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~ldL~y~----n~EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~~~~   90 (103)
T 2cu1_A           15 HRGEKRILQFPRPVKLEDLRSKAKIAFGQSMDLHYT----NNELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVINGST   90 (103)
T ss_dssp             ETTEEEEEEEESSCCHHHHHHHHHHHHSSCEEEEEC----SSSSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEECCCC
T ss_pred             ecCeEEEEeccCCccHHHHHHHHHHHhCCeeeEEEe----cceEEEeccCHHHHHHHHHHHccCCcccceEEEEecCCCC
Confidence            479999999999999999999999999999999999    6799999999999999999999987777788899988766


Q ss_pred             CCc
Q 029397          117 KKV  119 (194)
Q Consensus       117 ~~~  119 (194)
                      ...
T Consensus        91 ~~~   93 (103)
T 2cu1_A           91 QAT   93 (103)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            533

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=98.89  E-value=9.8e-09  Score=76.83  Aligned_cols=71  Identities=20%  Similarity=0.329  Sum_probs=62.7

Q ss_pred             cCceEEEEecCCCCHHHHHHHHHhhcCC----cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397           38 GGLTRVLSVERSISFAELMVKLGEFCGY----SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP  112 (194)
Q Consensus        38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~----~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp  112 (194)
                      +|+.+++.|+.+++|.+|..|+.++|+.    .+++||-  +|| ..+|++++|+||+..+.-|+.. +..+|.+.+||
T Consensus        14 ~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~--DEe-GD~itisSd~EL~eAl~l~~~n-~~~~l~ihvf~   88 (89)
T 1vd2_A           14 RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI--DEE-GDPCTVSSQLELEEAFRLYELN-KDSELLIHVFP   88 (89)
T ss_dssp             SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC--CSS-SCCEECCSHHHHHHHHHHHHHT-SCCCEEEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE--CCC-CCcccccCHHHHHHHHHHHHcc-CCCCEEEEEcc
Confidence            3568999999999999999999999984    6999998  776 7899999999999999988764 47889999997

>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A

Probab=98.35  E-value=3.8e-06  Score=63.93  Aligned_cols=73  Identities=25%  Similarity=0.440  Sum_probs=64.8

Q ss_pred             cCceEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeCCC
Q 029397           38 GGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSPPA  114 (194)
Q Consensus        38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp~~  114 (194)
                      -||.|||.++|.+.|.||..|+...||..+.+-|-  ++  +-+|-+.|.|||+.-||-.||...---||+.|....
T Consensus        12 ~gEKRIi~f~RPvkf~dl~qkv~~afGq~ldl~y~--nn--EL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~~~   84 (94)
T 2jrh_A           12 NGERRIIAFSRPVKYEDVEHKVTTVFGQPLDLHYM--NN--ELSILLKNQDDLDKAIDILDRSSSMKSLRILLLSQD   84 (94)
T ss_dssp             TTEEEEEEECSSCCHHHHHHHHHHHHCSSEEEEEE--CS--SCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEEECS
T ss_pred             cCceEEEecCCCccHHHHHHHHHHHhCCeeeeEEe--cc--eeEEeccCHHHHHHHHHHhccCccccceEEEEEcCC
Confidence            48999999999999999999999999999999998  33  579999999999999999999766666788887643

>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2

Probab=98.28  E-value=4.8e-06  Score=64.03  Aligned_cols=71  Identities=27%  Similarity=0.408  Sum_probs=62.9

Q ss_pred             cCceEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397           38 GGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP  112 (194)
Q Consensus        38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp  112 (194)
                      -||.|||.++|.+.|.||..|+...||..+.|-|-  ++  +-+|-+.|.|||+.-||-.||...---||+.|..
T Consensus        28 ~gEkRIi~f~RPv~f~el~~kv~~afGq~ldl~y~--nn--EL~iPL~~Q~DLDkAvelLDrs~~~kSLrIlL~~   98 (100)
T 2npt_B           28 RGEKRILQFPRPVKLEDLRSKAKIAFGQSMDLHYT--NN--ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVI   98 (100)
T ss_dssp             TTEEEEEEECSSCCHHHHHHHHHHHHTSCEEEEEE--ET--TEEEECCCHHHHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred             cCceEEEecCCCccHHHHHHHHHHHhCCeeeeEEe--cc--eeEEecccHHHHHHHHHHhccCccccceEEEEec
Confidence            47999999999999999999999999999999998  33  5799999999999999999997665667887753

>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B

Probab=98.27  E-value=5.6e-06  Score=64.51  Aligned_cols=71  Identities=25%  Similarity=0.455  Sum_probs=63.0

Q ss_pred             cCceEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397           38 GGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP  112 (194)
Q Consensus        38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp  112 (194)
                      -||.|||.++|.+.|.||..|+...||..+.|-|-  ++  +-+|-+.|.|||+.-||-.||...---||+.|..
T Consensus        39 ~gEKRIiqf~RPvkf~dl~qkv~~afGq~ldl~y~--nn--EL~IPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~  109 (111)
T 2c60_A           39 NGERRIIAFSRPVKYEDVEHKVTTVFGQPLDLHYM--NN--ELSILLKNQDDLDKAIDILDRSSSMKSLRILLLS  109 (111)
T ss_dssp             TTEEEEEEECSSCCHHHHHHHHHHHHSSCCEEEEE--CS--SCEEECCSHHHHHHHHHHHHHCSSCCSEEEEEEC
T ss_pred             cCceEEEecCCCccHHHHHHHHHHHhCCeeeeEEe--cc--eEEEecccHHHHHHHHHHhccCccccceEEEEec
Confidence            47999999999999999999999999999999998  33  5799999999999999999997655667888764

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=98.18  E-value=6.5e-06  Score=62.82  Aligned_cols=68  Identities=18%  Similarity=0.225  Sum_probs=55.0

Q ss_pred             CceEEEEecCCCCHHHHHHHHHhhcCC--------cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEE
Q 029397           39 GLTRVLSVERSISFAELMVKLGEFCGY--------SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL  110 (194)
Q Consensus        39 GeTRIi~V~Rsisf~eL~~kLs~l~g~--------~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFL  110 (194)
                      ++++.|.|+.+|+|.+|..|+.+.++.        .+.||||  +|| ...|++.+||||+-.+++..... .+++-+.+
T Consensus        22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYk--DEd-GD~Vtl~sddDl~~A~e~~~e~~-~~~l~Iwv   97 (98)
T 1q1o_A           22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DED-GDFVVLGSDEDWNVAKEMLAENN-EKFLNIRL   97 (98)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEE--CSS-SCEEEECSHHHHHHHHHHHHHTT-CCEEEEEE
T ss_pred             CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEE--cCC-CCEEEEcCHHHHHHHHHHHHhhh-cCeEEEEE
Confidence            689999999999999999999886542        2679999  454 48999999999999998876542 46666654

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=98.13  E-value=1.1e-05  Score=61.69  Aligned_cols=68  Identities=13%  Similarity=0.130  Sum_probs=56.8

Q ss_pred             ecCceEEEEecCC-----------CCHHHHHHHHHhhcC----CcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhC
Q 029397           37 VGGLTRVLSVERS-----------ISFAELMVKLGEFCG----YSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAA  101 (194)
Q Consensus        37 vGGeTRIi~V~Rs-----------isf~eL~~kLs~l~g----~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~  101 (194)
                      .|.|.|=++++++           .+|.+|+.++.++|.    ..|.|||.  +|| .-||++++||||...+.+-.   
T Consensus        18 ~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~--Ded-GDlItiSsDeEL~~Al~~~~---   91 (102)
T 2kkc_A           18 AAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYR--AER-GDLVAFSSDEELTMAMSYVK---   91 (102)
T ss_dssp             CEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTT-CCEEEECSHHHHHHHHHHCC---
T ss_pred             CCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEE--CCC-CCEEEecCHHHHHHHHHhcC---
Confidence            3689999999875           489999999999984    47999999  555 66999999999999888543   


Q ss_pred             CCCceEEEEe
Q 029397          102 PSSKIRAILS  111 (194)
Q Consensus       102 ~s~rlRvFLF  111 (194)
                       ..-+|||+-
T Consensus        92 -~~~lRlyVk  100 (102)
T 2kkc_A           92 -DDIFRIYIK  100 (102)
T ss_dssp             -SSEEEEEEE
T ss_pred             -CCeEEEEEE
Confidence             578999973

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=98.00  E-value=1.3e-05  Score=58.35  Aligned_cols=68  Identities=18%  Similarity=0.202  Sum_probs=56.0

Q ss_pred             ceEEEEecCCCCHHHHHHHHHhhcC--------CcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397           40 LTRVLSVERSISFAELMVKLGEFCG--------YSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS  111 (194)
Q Consensus        40 eTRIi~V~Rsisf~eL~~kLs~l~g--------~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF  111 (194)
                      +++.|.|+.+|+|.+|..|+.+.++        ..+.||||  +|| ...|++.+||||+--++..... ..+++-+.+|
T Consensus         2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYk--DEd-GD~Vti~sddDl~~A~~~~~~~-~~~~leiWv~   77 (77)
T 1pqs_A            2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DED-GDFVVLGSDEDWNVAKEMLAEN-NEKFLNIRLY   77 (77)
T ss_dssp             CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE--ETT-TEEEECCSTTHHHHHHHHHHHH-CCCEEEEECC
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEE--cCC-CCEEEEcCHHHHHHHHHHHHhh-hcCeEEEEEC
Confidence            6899999999999999999998776        34789998  555 6899999999999888876543 2577777665

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=97.94  E-value=3e-05  Score=60.72  Aligned_cols=67  Identities=13%  Similarity=0.131  Sum_probs=56.0

Q ss_pred             cCceEEEEecCCC-----------CHHHHHHHHHhhcC----CcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCC
Q 029397           38 GGLTRVLSVERSI-----------SFAELMVKLGEFCG----YSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAP  102 (194)
Q Consensus        38 GGeTRIi~V~Rsi-----------sf~eL~~kLs~l~g----~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~  102 (194)
                      ++|.|=++++.+.           +|.+|+.++.++|.    ..|.|||.  +|| .-||.+++||||..-+.+-.    
T Consensus        34 ~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~Yk--DEd-GDlItISsDeEL~~Al~~~~----  106 (117)
T 2ktr_A           34 AREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYR--AER-GDLVAFSSDEELTMAMSYVK----  106 (117)
T ss_dssp             EEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTT-CCEEEECSHHHHHHHHHHCC----
T ss_pred             CCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEE--CCC-CCEEEecCHHHHHHHHHhcC----
Confidence            4799999998653           99999999999993    47999999  555 56999999999998887633    


Q ss_pred             CCceEEEEe
Q 029397          103 SSKIRAILS  111 (194)
Q Consensus       103 s~rlRvFLF  111 (194)
                      ...+|||+-
T Consensus       107 ~~~lRlyVk  115 (117)
T 2ktr_A          107 DDIFRIYIK  115 (117)
T ss_dssp             SSEEEEEEE
T ss_pred             CCeEEEEEE
Confidence            578999974

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=97.44  E-value=0.00027  Score=52.25  Aligned_cols=68  Identities=10%  Similarity=0.173  Sum_probs=53.5

Q ss_pred             eEeecCceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEE
Q 029397           34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL  110 (194)
Q Consensus        34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFL  110 (194)
                      ..|.  +|.+|.|+++++|++|..||++-.+.   .+.|.|.=+.+  ..++ +.+||||+.++..=.    .+||.++.
T Consensus        10 V~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s--~~~v-i~~d~dl~~aw~~~~----n~~LtL~C   80 (83)
T 1oey_A           10 VHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDS--NELV-PLSEDSMKDAWGQVK----NYCLTLWC   80 (83)
T ss_dssp             EESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTC--SSCE-ECCTTTHHHHHTTCB----TTEEEEEE
T ss_pred             EEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCC--CCee-ccChHHHHHHHHhcc----CCcEEEEE
Confidence            4566  79999999999999999999997765   56799986633  6778 999999999885422    35676664

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=97.40  E-value=0.00085  Score=50.09  Aligned_cols=68  Identities=19%  Similarity=0.277  Sum_probs=53.3

Q ss_pred             EeecCceEEEEecCC--CCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEE
Q 029397           35 RYVGGLTRVLSVERS--ISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAI  109 (194)
Q Consensus        35 rYvGGeTRIi~V~Rs--isf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvF  109 (194)
                      ..-|+|.|=.+++|+  .+|.+|..++..++..   +|.|+|.=+.   ..||.|+|||+|..-+. +-   ++ -+|||
T Consensus        11 skf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~d---GDLlpInnDdnl~~Al~-~a---~p-lLRl~   82 (86)
T 1wmh_B           11 SKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAH---GDLLPLTNDDSLHRALA-SG---PP-PLRLL   82 (86)
T ss_dssp             EEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTT---SCEEECCSHHHHHHHTT-SS---SS-CEEEE
T ss_pred             eecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECCC---CCEeeecCHHHHHHHHH-hC---CC-cEEEE
Confidence            456889999999977  8999999999998754   7999999543   45999999998876443 11   23 78888


Q ss_pred             E
Q 029397          110 L  110 (194)
Q Consensus       110 L  110 (194)
                      +
T Consensus        83 I   83 (86)
T 1wmh_B           83 V   83 (86)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=97.20  E-value=0.0034  Score=47.08  Aligned_cols=69  Identities=7%  Similarity=0.177  Sum_probs=55.5

Q ss_pred             cCceEEEEe--cCCCCHHHHHHHHHhhcCC-cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397           38 GGLTRVLSV--ERSISFAELMVKLGEFCGY-SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS  111 (194)
Q Consensus        38 GGeTRIi~V--~Rsisf~eL~~kLs~l~g~-~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF  111 (194)
                      .||++.+-|  .|.++|.||.+.+...||. ++.|||.  +|| +-.|+|+|+++++.++.=+..  .+..|+++++
T Consensus        14 ~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~~~ikY~--DEe-nD~v~i~Sq~E~eEAlkva~k--~~n~L~m~v~   85 (87)
T 2bkf_A           14 KNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYL--DEE-NEEVSINSQGEYEEALKMAVK--QGNQLQMQVH   85 (87)
T ss_dssp             TTEEEEEEESCGGGCCHHHHHHHHHHHHTCSSEEEEEE--CTT-SCEEEECSHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             cCCeeEEEeccCCCCCHHHHHHHHHHHcCCCceEEEEE--cCC-CCEEEEecHHHHHHHHHHhcc--CCCEEEEEEe
Confidence            567777555  5699999999999999997 7999997  666 779999999998888875544  2566777765

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=96.91  E-value=0.003  Score=49.05  Aligned_cols=68  Identities=22%  Similarity=0.315  Sum_probs=55.4

Q ss_pred             cCceEEEEecCCC----CHHHHHHHHHhhcCC-cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397           38 GGLTRVLSVERSI----SFAELMVKLGEFCGY-SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP  112 (194)
Q Consensus        38 GGeTRIi~V~Rsi----sf~eL~~kLs~l~g~-~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp  112 (194)
                      |-.+|=|.|..++    +|.||+..+...+.. ++.|+|+=+.+|   ||.+.+||||.-||.+-..+  +++.|  +||
T Consensus        17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~~~DIaLNYrD~eGD---LIrilddeDv~lmi~~sr~~--~s~k~--~FP   89 (107)
T 1oey_J           17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGD---LVRLLSDEDVALMVRQARGL--PSQKR--LFP   89 (107)
T ss_dssp             EEEEEEEEECSCTTCCCCHHHHHHHHHHHHCCSSEEEEEECTTSC---EEECCSHHHHHHHHHHCCCC--CCTTC--BCS
T ss_pred             CceeeeEEEccccccCCCHHHHHHHHHHHhcccceeeeeecCCCC---EEEEcchHHHHHHHHHhhcC--ccccc--ccc
Confidence            5567889998886    599999999998876 899999977666   99999999999999987543  44444  555

>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=96.79  E-value=0.0039  Score=47.96  Aligned_cols=71  Identities=7%  Similarity=0.170  Sum_probs=57.3

Q ss_pred             ecCceEEEEe--cCCCCHHHHHHHHHhhcCC-cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397           37 VGGLTRVLSV--ERSISFAELMVKLGEFCGY-SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP  112 (194)
Q Consensus        37 vGGeTRIi~V--~Rsisf~eL~~kLs~l~g~-~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp  112 (194)
                      -.||++.+-|  .|.++|.||.+.+...||. ++.|||.  +|| +-.|+|+++++++.++.=+.+-  +..|+++++-
T Consensus        21 f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~~~IkY~--DEe-nD~V~i~Sq~E~eEAlkva~k~--~n~L~m~V~~   94 (101)
T 1wj6_A           21 FKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYL--DEE-NEEVSINSQGEYEEALKMAVKQ--GNQLQMQVHE   94 (101)
T ss_dssp             ETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSSBCCEEE--CTT-SCEECCCSHHHHHHHHHHHHHH--TSEEEEECCB
T ss_pred             EcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCceEEEEe--cCC-CCEEEEecHHHHHHHHHHhccC--CCEEEEEEee
Confidence            3567777555  5699999999999999997 7899997  666 7799999999988888755442  5678888865

>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A

Probab=96.06  E-value=0.019  Score=42.94  Aligned_cols=57  Identities=19%  Similarity=0.245  Sum_probs=44.2

Q ss_pred             ecCceEEEEecCCCCHHHHHHHHHhhcCC-cEEEEeecCCCCCCcEEeecChhHHHHHHHH
Q 029397           37 VGGLTRVLSVERSISFAELMVKLGEFCGY-SVTLRCQLPNGDLETLISIKSDDDLANLIEE   96 (194)
Q Consensus        37 vGGeTRIi~V~Rsisf~eL~~kLs~l~g~-~v~lKYQLP~edLDaLISVssDeDL~nM~eE   96 (194)
                      --+|--+|.||.+|+|++|..||.+-... ++.+.+-. +|..-.  .+.+|+||..-|+.
T Consensus        19 y~DDIiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~yk-de~~g~--~i~sD~dl~~aiqr   76 (85)
T 1ip9_A           19 YKDDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKL-FDGSGE--EIKTDSQVSNIIQA   76 (85)
T ss_dssp             BTTCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECC-SSSCCS--CCCSHHHHHHHHHT
T ss_pred             ecCcEEEEECCCCCCHHHHHHHHHHHhcccceEEEEec-CCCCCC--cccCHHHHHHHHHh
Confidence            33688899999999999999999987654 55443333 555555  99999999998875

>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A

Probab=91.58  E-value=0.3  Score=37.63  Aligned_cols=50  Identities=14%  Similarity=0.382  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHhhcCCc--EEEEeecCCCCCCcEEeecChhHHHHHHHHHhhh
Q 029397           48 RSISFAELMVKLGEFCGYS--VTLRCQLPNGDLETLISIKSDDDLANLIEEYDRA  100 (194)
Q Consensus        48 Rsisf~eL~~kLs~l~g~~--v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~  100 (194)
                      ..++|.|+..-+.......  -.|.|.  +|| ..=|+|.+||+|+.|+..|...
T Consensus        35 ~~L~FrDvL~~I~~vmP~aT~TAFeYE--DE~-gDRITVRSDeE~kAMlsyy~~~   86 (106)
T 2npt_A           35 PQLLFRDVLDVIGQVLPEATTTAFEYE--DED-GDRITVRSDEEMKAMLSYYYST   86 (106)
T ss_dssp             -CCCHHHHHHHHHHHSTTSCCSEEEEE--CTT-SCEEEECSHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhCccceeeeeeec--ccc-CCeeEEcchHHHHHHHHHHHHH
Confidence            6799999999999988652  347776  565 4469999999999999988643

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=91.54  E-value=0.081  Score=38.67  Aligned_cols=71  Identities=18%  Similarity=0.169  Sum_probs=44.0

Q ss_pred             eEeecCceEEEEecCCCCHHHHHHHHHhhcCCc---EEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEE
Q 029397           34 LRYVGGLTRVLSVERSISFAELMVKLGEFCGYS---VTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAIL  110 (194)
Q Consensus        34 LrYvGGeTRIi~V~Rsisf~eL~~kLs~l~g~~---v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFL  110 (194)
                      ++..+|.+..|.|+.+.+..+|+.++.+..|.+   ..|-|.  |..|       .|+   .-+.+|. +.....|-+.+
T Consensus         6 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~--Gk~L-------~D~---~tL~~~~-i~~g~~i~lv~   72 (106)
T 3m62_B            6 FKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS--GKVL-------QDS---KTVSECG-LKDGDQVVFMV   72 (106)
T ss_dssp             EECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET--TEEC-------CTT---SBTTTTT-CCTTCEEEEEC
T ss_pred             EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC--CEEC-------CCc---CCHHHcC-CCCCCEEEEEE
Confidence            345678899999999999999999999998863   445553  3222       121   2344553 23356777777


Q ss_pred             eCCCCCC
Q 029397          111 SPPASLK  117 (194)
Q Consensus       111 Fp~~~~~  117 (194)
                      -.+++.+
T Consensus        73 ~~~~~~~   79 (106)
T 3m62_B           73 SQKKSTK   79 (106)
T ss_dssp             CC-----
T ss_pred             cCCCCCC
Confidence            6655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	194
d1ip9a_	85	d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker'	1e-05
d2c60a1	80	d.15.2.2 (A:43-122) Mitogen-activated protein kina	4e-04
d2nptb1	82	d.15.2.2 (B:42-123) Mitogen-activated protein kina	8e-04

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 36 YVGGLTRVLSVERSISFAELMVKLGE-FCGYSVTLRCQLPNGDLETLISIKSDDDLANLI 94
          Y       L ++   ++ EL  K+       +  L+ +L +G  E + +   D  ++N+I
Sbjct: 18 YYKDDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKLFDGSGEEIKT---DSQVSNII 74

Query: 95 EEYDR 99
          +   +
Sbjct: 75 QAKLK 79

>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3, MEKK 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen-activated protein kinase kinase kinase 3, MEKK 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 4e-04
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 39  GLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYD 98
           G  R+++  R + + ++  K+    G  + L     N   E  I +K+ DDL   I+  D
Sbjct: 11  GERRIIAFSRPVKYEDVEHKVTTVFGQPLDLHYM--NN--ELSILLKNQDDLDKAIDILD 66

Query: 99  RAAPSSKIRAIL 110
           R++    +R +L
Sbjct: 67  RSSSMKSLRILL 78

>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen-activated protein kinase kinase kinase 2, MEKK 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 8e-04
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 39  GLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYD 98
           G  R+L   R +   +L  K     G S+ L     N +L  +I + + DDL   +E  D
Sbjct: 11  GEKRILQFPRPVKLEDLRSKAKIAFGQSMDLHYT--NNEL--VIPLTTQDDLDKAVELLD 66

Query: 99  RAAPSSKIRAIL 110
           R+     ++ +L
Sbjct: 67  RSIHMKSLKILL 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	98.84
d2c60a1	80	Mitogen-activated protein kinase kinase kinase 3,	98.35
d2nptb1	82	Mitogen-activated protein kinase kinase kinase 2,	98.29
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	98.23
d1oeyj_	105	Neutrophil cytosol factor 4 (p40phox component of	96.68
d1wmha_	83	Protein kinase C, iota type {Human (Homo sapiens)	95.96
d1pqsa_	77	Cell division control protein 24, CDC24, C-termina	95.67
d2npta1	105	Mitogen activated protein kinase kinase 5, Map2k5	95.43
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	95.04

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=1.7e-09  Score=77.38  Aligned_cols=58  Identities=19%  Similarity=0.166  Sum_probs=50.8

Q ss_pred             cCceEEEEecCCCCHHHHHHHHHhhcCC-cEEEEeecCCCCCCcEEeecChhHHHHHHHHHh
Q 029397           38 GGLTRVLSVERSISFAELMVKLGEFCGY-SVTLRCQLPNGDLETLISIKSDDDLANLIEEYD   98 (194)
Q Consensus        38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~-~v~lKYQLP~edLDaLISVssDeDL~nM~eEYd   98 (194)
                      ++|++++.|+.+++|.||+.|+.+.++. .+.|||+  +|| +.+|+++||+||+++|++..
T Consensus        20 ~~D~~~~~l~~~it~~dL~~kI~~rf~~~~~~lkY~--Ded-gd~v~i~sD~Dl~~ai~~~~   78 (85)
T d1ip9a_          20 KDDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTK--LFD-GSGEEIKTDSQVSNIIQAKL   78 (85)
T ss_dssp             TTCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEEC--CSS-SCCSCCCSHHHHHHHHHTTC
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHhCCCceEEEEE--cCC-CCEEEEeCHHHHHHHHHhcC
Confidence            5678999999999999999999998874 7999999  555 67899999999999998543

>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3, MEKK 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen-activated protein kinase kinase kinase 3, MEKK 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.7e-06  Score=62.54  Aligned_cols=70  Identities=26%  Similarity=0.459  Sum_probs=61.7

Q ss_pred             cCceEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397           38 GGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS  111 (194)
Q Consensus        38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF  111 (194)
                      -||.|||.++|.+.|.||..|+.+.||..+.+-|-  ++  +-+|-+.+.+||+.-||-.|+...---||+.|.
T Consensus        10 ~gEkRIi~f~RPv~~~dl~~kv~~afGq~ldl~y~--n~--El~IPl~~Q~DLDkAvellDrs~~~ksLrilL~   79 (80)
T d2c60a1          10 NGERRIIAFSRPVKYEDVEHKVTTVFGQPLDLHYM--NN--ELSILLKNQDDLDKAIDILDRSSSMKSLRILLL   79 (80)
T ss_dssp             TTEEEEEEECSSCCHHHHHHHHHHHHSSCCEEEEE--CS--SCEEECCSHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred             cCceEEEecCCCccHHHHHHHHHHHhCCeeeeEEe--cC--eEEEecccHHHHHHHHHHHccCcccceeEEEEe
Confidence            48999999999999999999999999999999998  33  568999999999999999999765334888774

>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen-activated protein kinase kinase kinase 2, MEKK 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.4e-06  Score=61.92  Aligned_cols=70  Identities=27%  Similarity=0.426  Sum_probs=61.1

Q ss_pred             cCceEEEEecCCCCHHHHHHHHHhhcCCcEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397           38 GGLTRVLSVERSISFAELMVKLGEFCGYSVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS  111 (194)
Q Consensus        38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF  111 (194)
                      -||.|||.++|.+.|.||..|+.+.||..+.+-|-  ++  .-+|-+.+.+||+.-||-.|+...---||+.|.
T Consensus        10 ~gEkRIi~f~RPv~~~dl~~kv~~afGq~ldl~y~--n~--EL~IPl~~Q~DLDkAvellDrs~~~ksLrilL~   79 (82)
T d2nptb1          10 RGEKRILQFPRPVKLEDLRSKAKIAFGQSMDLHYT--NN--ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLV   79 (82)
T ss_dssp             TTEEEEEEECSSCCHHHHHHHHHHHHTSCEEEEEE--ET--TEEEECCCHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred             cCceEEEecCCCccHHHHHHHHHHHhCCeeeEEEe--cC--eEEEecccHHHHHHHHHHHccCccccceEEEEE
Confidence            48999999999999999999999999999999998  33  579999999999999999999765334666654

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.5e-06  Score=61.12  Aligned_cols=69  Identities=7%  Similarity=0.166  Sum_probs=55.0

Q ss_pred             cCceEE--EEecCCCCHHHHHHHHHhhcCC-cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEe
Q 029397           38 GGLTRV--LSVERSISFAELMVKLGEFCGY-SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILS  111 (194)
Q Consensus        38 GGeTRI--i~V~Rsisf~eL~~kLs~l~g~-~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLF  111 (194)
                      ||||+-  |+.+.+.+|.+|.++++..++. +|.|||.  ++| +-.|.++||+||+.-++-..+  .+..||+++.
T Consensus        12 ~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~~~~lkY~--Ddd-~e~v~l~~d~dl~E~~~~a~~--~~~~irl~v~   83 (85)
T d2bkfa1          12 KNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYL--DEE-NEEVSINSQGEYEEALKMAVK--QGNQLQMQVH   83 (85)
T ss_dssp             TTEEEEEEESCGGGCCHHHHHHHHHHHHTCSSEEEEEE--CTT-SCEEEECSHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             CCceEEEEecCCCCCcHHHHHHHHHHhcCcccceEEEE--cCC-CCEEEEecHHHHHHHHHHHhc--CCCEEEEEEe
Confidence            455543  5678999999999999999986 7999998  444 679999999999988776554  3577888875

>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.003  Score=47.09  Aligned_cols=56  Identities=20%  Similarity=0.318  Sum_probs=51.5

Q ss_pred             cCceEEEEecCCC----CHHHHHHHHHhhcCC-cEEEEeecCCCCCCcEEeecChhHHHHHHHH
Q 029397           38 GGLTRVLSVERSI----SFAELMVKLGEFCGY-SVTLRCQLPNGDLETLISIKSDDDLANLIEE   96 (194)
Q Consensus        38 GGeTRIi~V~Rsi----sf~eL~~kLs~l~g~-~v~lKYQLP~edLDaLISVssDeDL~nM~eE   96 (194)
                      |+.+|=|+|..++    +|.||+..+..-++. ++.|.|.=|.+|   ||-+-+|||++-||+|
T Consensus        15 ~~~~rDI~veedl~~~P~ykdLl~lmr~~f~~~dIaLNYrD~eGD---LIRllddeDv~LMv~~   75 (105)
T d1oeyj_          15 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGD---LVRLLSDEDVALMVRQ   75 (105)
T ss_dssp             EEEEEEEEECSCTTCCCCHHHHHHHHHHHHCCSSEEEEEECTTSC---EEECCSHHHHHHHHHH
T ss_pred             cceeeeEEEccccccCccHHHHHHHHHHHhccceeEeeeecCCCC---EEEEcchhhHHHHHHH
Confidence            6889999999997    599999999998877 899999988887   8999999999999998

>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Protein kinase C, iota type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.053  Score=38.68  Aligned_cols=71  Identities=20%  Similarity=0.329  Sum_probs=57.1

Q ss_pred             cCceEEEEecCCCCHHHHHHHHHhhcCC----cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhCCCCceEEEEeC
Q 029397           38 GGLTRVLSVERSISFAELMVKLGEFCGY----SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAAPSSKIRAILSP  112 (194)
Q Consensus        38 GGeTRIi~V~Rsisf~eL~~kLs~l~g~----~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~~s~rlRvFLFp  112 (194)
                      +|+--|..++.+|+|.+|...+.++|+.    .|++|+=  +|+ .-=++|+|+.+|+.-+--|... +-.-|=+-+||
T Consensus         9 ~G~i~it~~~~~it~e~l~~evr~~C~f~~~q~fT~KWi--DeE-GDPCTISSQmEL~EA~RLye~n-~dseL~iHVFP   83 (83)
T d1wmha_           9 RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI--DEE-GDPCTVSSQLELEEAFRLYELN-KDSELLIHVFP   83 (83)
T ss_dssp             TTEEEEEEECTTCCHHHHHHHHHHHTTCCTTCCCEEEEE--CTT-SCEEECCSHHHHHHHHHHHHHT-TCSCEEEEEEC
T ss_pred             cCeEEEEecCCCccHHHHHHHHHHHhCCCcCCcEEEEEE--cCC-CCceeeecHHHHHHHHHHHHcc-CCcceEEEecC
Confidence            5566689999999999999999999987    6999995  444 3468999999999998888754 34556666666

>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Cell division control protein 24, CDC24, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.67  E-value=0.0085  Score=42.45  Aligned_cols=57  Identities=19%  Similarity=0.273  Sum_probs=46.5

Q ss_pred             EEEEecCCCCHHHHHHHHHhh---cCC-----cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhhhC
Q 029397           42 RVLSVERSISFAELMVKLGEF---CGY-----SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDRAA  101 (194)
Q Consensus        42 RIi~V~Rsisf~eL~~kLs~l---~g~-----~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr~~  101 (194)
                      -.|-|+.+|+|.+|..|+...   |+.     ...||||  +|| ...|.+.+|||.+--++++.+..
T Consensus         4 fTLvV~~~i~f~~L~~kI~~Kia~~~~~~~~~~~rlrY~--DeD-GD~V~i~sddd~~~a~~~~~e~~   68 (77)
T d1pqsa_           4 FTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DED-GDFVVLGSDEDWNVAKEMLAENN   68 (77)
T ss_dssp             EEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE--ETT-TEEEECCSTTHHHHHHHHHHHHC
T ss_pred             EEEEEEcCcCHHHHHHHHHHHHHhccCCCCCccceEEEE--cCC-CCEEEEeccchHHHHHHHHHhcc
Confidence            468899999999999999863   443     2369999  466 67999999999999888888753

>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen activated protein kinase kinase 5, Map2k5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.017  Score=42.87  Aligned_cols=50  Identities=14%  Similarity=0.375  Sum_probs=40.1

Q ss_pred             cCCCCHHHHHHHHHhhcCC--cEEEEeecCCCCCCcEEeecChhHHHHHHHHHhh
Q 029397           47 ERSISFAELMVKLGEFCGY--SVTLRCQLPNGDLETLISIKSDDDLANLIEEYDR   99 (194)
Q Consensus        47 ~Rsisf~eL~~kLs~l~g~--~v~lKYQLP~edLDaLISVssDeDL~nM~eEYdr   99 (194)
                      ++.++|.|+...++.....  .-.+.|.  +|| .-=|+|.|||+|+.||..|..
T Consensus        33 ~~~l~F~dvL~~i~q~~p~at~taFEYE--DEd-GDRITVRSDEEl~AMisyy~~   84 (105)
T d2npta1          33 GPQLLFRDVLDVIGQVLPEATTTAFEYE--DED-GDRITVRSDEEMKAMLSYYYS   84 (105)
T ss_dssp             --CCCHHHHHHHHHHHSTTSCCSEEEEE--CTT-SCEEEECSHHHHHHHHHHHHH
T ss_pred             CceeeHHHHHHHHHHhcccccccceeec--ccc-CCEeEEccHHHHHHHHHHHHH
Confidence            3689999999999998865  3458886  666 346999999999999998864

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.024  Score=40.30  Aligned_cols=54  Identities=11%  Similarity=0.295  Sum_probs=44.7

Q ss_pred             ceEEEEecCCCCHHHHHHHHHhhcCC---cEEEEeecCCCCCCcEEeecChhHHHHHHHH
Q 029397           40 LTRVLSVERSISFAELMVKLGEFCGY---SVTLRCQLPNGDLETLISIKSDDDLANLIEE   96 (194)
Q Consensus        40 eTRIi~V~Rsisf~eL~~kLs~l~g~---~v~lKYQLP~edLDaLISVssDeDL~nM~eE   96 (194)
                      =|-+|.|+|..++++|+.++++....   ...|.|. |.++ ..+|-++ +||++.++..
T Consensus        14 fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~-~~~~-~e~v~ls-ee~me~aWs~   70 (82)
T d1oeya_          14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR-PRDS-NELVPLS-EDSMKDAWGQ   70 (82)
T ss_dssp             SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC-CTTC-SSCEECC-TTTHHHHHTT
T ss_pred             EEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec-cCCC-Cceeccc-hHHHHHHHHh
Confidence            37899999999999999999998876   4679997 7665 6777775 9998888754