Citrus Sinensis ID: 029409

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MEAAAFYGGSRGIPCIHPPSSSSKRNAFSSLLVQSMATQKPLPSAAKTVGSRKNSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQKSS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEHHccccccccccccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHccccHHHHHccccccccccccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHEEcccccccccccccccccccccccccEHHHHccccccccccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHcHHccccccccHHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
meaaafyggsrgipcihppsssskrNAFSSLLVQSmatqkplpsaaktvgsrknsvvfplgepgprnaplatsppvklLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGllskaeefgvlsaatdpatpgALLTLSLGLlllgpscvylvpedypwEVALQGVVALVSVVGGSAAFAASNLVSNLQKSS
Flexible Loop (DISEMBL)
MEAAafyggsrgipcihppssSSKRNAFSSLLVQSMATQKPlpsaaktvgsrKNSVVFplgepgprnaplatsppvkLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAasnlvsnlqkss
Low Complexity Region (SEG)
MEAAAFYGGSRGIPCIHPPSSSSKRNAFSSLLVQSMATQKPLPSAAKTVGSRKNSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDpatpgalltlslgllllgpsCVYLVPEDYPWEvalqgvvalvsvvggsaafaasNLVSNLQKSS
Disordered region (IsUnstruct)
*****************************************************************************LLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASN*********
Disordered Region (DISOPRED)
*********SR*****************************************KNSVVFPL*****************LLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQ***
Disordered Region (DISEMBL)
********GSRGIPCIHPPSSSSKRNAFSSLLVQSMATQ************RKNSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQKSS
Disordered Region (DISPRO)
***********GIP***P************************************S****LGEP********TSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQ***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEAAAFYGGSRGIPCIHPPSSSSKRNAFSSLLVQSMATQKPLPSAAKTVGSRKNSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQKSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
255547173	188	conserved hypothetical protein [Ricinus	0.963	0.994	0.813	6e-69
359491758	206	PREDICTED: uncharacterized protein LOC10	0.850	0.800	0.843	3e-64
297734067	160	unnamed protein product [Vitis vinifera]	0.809	0.981	0.854	4e-61
449439329	197	PREDICTED: uncharacterized protein LOC10	0.989	0.974	0.738	2e-60
224130146	194	predicted protein [Populus trichocarpa]	0.994	0.994	0.764	2e-58
357457451	185	hypothetical protein MTR_3g026020 [Medic	0.860	0.902	0.689	7e-52
351726766	214	uncharacterized protein LOC100500269 [Gl	0.984	0.892	0.678	7e-51
15241507	158	uncharacterized protein [Arabidopsis tha	0.773	0.949	0.664	1e-41
17978981	158	AT5g08050/F13G24_250 [Arabidopsis thalia	0.773	0.949	0.664	2e-41
116780843	183	unknown [Picea sitchensis]	0.752	0.797	0.677	3e-40

>gi|255547173|ref|XP_002514644.1| conserved hypothetical protein [Ricinus communis] gi|223546248|gb|EEF47750.1| conserved hypothetical protein [Ricinus communis]

 Score =  265 bits (678), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 157/193 (81%), Positives = 167/193 (86%), Gaps = 6/193 (3%)

Query: 1   MEAAAFYGGSRGIPCIHPPSSSSKRNAFSSLLVQSMATQKPLPSAAKTVGSRKNSVVFPL 60
           MEAAA   GSRGI C    S + KR    +LL +SMA QKP+PSAAKTV SRKNS VFPL
Sbjct: 1   MEAAAI-SGSRGI-CFLYSSPNGKR----TLLNRSMAAQKPVPSAAKTVSSRKNSTVFPL 54

Query: 61  GEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAE 120
           GE GPRN+PL TSPP+KLLTRVE+LKLLSKAEKAGLLSAAEKFGLSLS+IEKLGLLSKAE
Sbjct: 55  GEKGPRNSPLVTSPPIKLLTRVEELKLLSKAEKAGLLSAAEKFGLSLSTIEKLGLLSKAE 114

Query: 121 EFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAA 180
           E GVLSAATDP TPGAL +LSLGLLLLGPSCVYLVPEDYPWE+ LQ  VALVSVVGGSAA
Sbjct: 115 ELGVLSAATDPGTPGALFSLSLGLLLLGPSCVYLVPEDYPWEIVLQVAVALVSVVGGSAA 174

Query: 181 FAASNLVSNLQKS 193
           FAASNLVSNLQKS
Sbjct: 175 FAASNLVSNLQKS 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491758|ref|XP_002265727.2| PREDICTED: uncharacterized protein LOC100243309 [Vitis vinifera]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 140/166 (84%), Positives = 151/166 (90%), Gaps = 1/166 (0%)

Query: 28  FSSLLVQSMATQKP-LPSAAKTVGSRKNSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLK 86
           FS LL+ SMATQKP LP A+KT+ SRK S VFPLGE GPR++PLAT PP+KLLTRVEQLK
Sbjct: 39  FSPLLIHSMATQKPTLPPASKTISSRKASTVFPLGEKGPRSSPLATPPPIKLLTRVEQLK 98

Query: 87  LLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLL 146
           LL+KAEKAGLLSAAEK+G SLSSIEKLGLLSKAEEFG+LSAATDP TPGALL+LSL LLL
Sbjct: 99  LLTKAEKAGLLSAAEKYGFSLSSIEKLGLLSKAEEFGILSAATDPGTPGALLSLSLVLLL 158

Query: 147 LGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQK 192
           LGPSC +LVPEDYPWEVALQ VVALV VVGGSAAFAASNLVSNLQK
Sbjct: 159 LGPSCAFLVPEDYPWEVALQLVVALVCVVGGSAAFAASNLVSNLQK 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734067|emb|CBI15314.3| unnamed protein product [Vitis vinifera]

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 135/158 (85%), Positives = 145/158 (91%), Gaps = 1/158 (0%)

Query: 36  MATQKP-LPSAAKTVGSRKNSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKA 94
           MATQKP LP A+KT+ SRK S VFPLGE GPR++PLAT PP+KLLTRVEQLKLL+KAEKA
Sbjct: 1   MATQKPTLPPASKTISSRKASTVFPLGEKGPRSSPLATPPPIKLLTRVEQLKLLTKAEKA 60

Query: 95  GLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYL 154
           GLLSAAEK+G SLSSIEKLGLLSKAEEFG+LSAATDP TPGALL+LSL LLLLGPSC +L
Sbjct: 61  GLLSAAEKYGFSLSSIEKLGLLSKAEEFGILSAATDPGTPGALLSLSLVLLLLGPSCAFL 120

Query: 155 VPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQK 192
           VPEDYPWEVALQ VVALV VVGGSAAFAASNLVSNLQK
Sbjct: 121 VPEDYPWEVALQLVVALVCVVGGSAAFAASNLVSNLQK 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439329|ref|XP_004137438.1| PREDICTED: uncharacterized protein LOC101204037 [Cucumis sativus] gi|449486926|ref|XP_004157444.1| PREDICTED: uncharacterized protein LOC101227416 [Cucumis sativus]

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 147/199 (73%), Positives = 166/199 (83%), Gaps = 7/199 (3%)

Query: 1   MEAAAFYGGS-RGIPCIH--PPSSSSKRNAFSSLLVQSMATQKPLPSAAKTVGSRK-NSV 56
           ME  +F   S R    I+  P +++S+R     L + SMAT+KPLPSAAKTVGS+K N+ 
Sbjct: 1   MEVTSFCSSSTRAASFIYSYPSTTTSRRK--RPLHLHSMATEKPLPSAAKTVGSKKINTT 58

Query: 57  VFPLGEPGPRNA-PLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGL 115
           VFPLGE GPR++  L+TSPP+KLLTRVEQLKLLSKAEKAGLLSAAEK GLSLSSIEKLGL
Sbjct: 59  VFPLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGL 118

Query: 116 LSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVV 175
           LSKAEE GVLSAATDP TPGALL+LSLGLLLLGPSCVYLVPED  WE+ LQ  VALVS+V
Sbjct: 119 LSKAEELGVLSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIVLQVAVALVSIV 178

Query: 176 GGSAAFAASNLVSNLQKSS 194
           GGSAAFAASNLVSNLQ+S+
Sbjct: 179 GGSAAFAASNLVSNLQRSN 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130146|ref|XP_002328665.1| predicted protein [Populus trichocarpa] gi|118487258|gb|ABK95457.1| unknown [Populus trichocarpa] gi|118488248|gb|ABK95943.1| unknown [Populus trichocarpa] gi|222838841|gb|EEE77192.1| predicted protein [Populus trichocarpa]

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 149/195 (76%), Positives = 165/195 (84%), Gaps = 2/195 (1%)

Query: 1   MEAAAFYGGSRGIPCIHPPSSSSKRNAFSS-LLVQSMATQKPLPSAAKTVGSRKNSVVFP 59
           MEA A  G SRG P     ++++  +  SS LL++SMA+QKPLPSAAKTV SRK+S VFP
Sbjct: 1   MEATALCG-SRGPPFRMKAAAAAISHTNSSPLLIKSMASQKPLPSAAKTVSSRKSSNVFP 59

Query: 60  LGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKA 119
            GE GPR+ PLATSPP+KLLTRVEQLKLL+KAEKAGLLSAAEKFGLSLS+IEKLGLLSKA
Sbjct: 60  PGEQGPRSRPLATSPPIKLLTRVEQLKLLTKAEKAGLLSAAEKFGLSLSTIEKLGLLSKA 119

Query: 120 EEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSA 179
           EE GVLSAATDP TPGALL+LSLGLL LGPSC YLVPEDYPWEVALQ  V L+ V GGSA
Sbjct: 120 EELGVLSAATDPGTPGALLSLSLGLLFLGPSCAYLVPEDYPWEVALQVAVVLLCVAGGSA 179

Query: 180 AFAASNLVSNLQKSS 194
           AFAASN VSNLQKS+
Sbjct: 180 AFAASNFVSNLQKSN 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357457451|ref|XP_003599006.1| hypothetical protein MTR_3g026020 [Medicago truncatula] gi|355488054|gb|AES69257.1| hypothetical protein MTR_3g026020 [Medicago truncatula]

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 120/174 (68%), Positives = 137/174 (78%), Gaps = 7/174 (4%)

Query: 19  PSSSSKRNAFSSLLVQSMATQKPLPSAAKTVGSRKNSVVFPLGEPGPRNAPLATSPPVKL 78
           P S+   + FS  LV+SMAT KP+     TV S+KNS VFPLGE  PR+A + ++  VKL
Sbjct: 17  PPSTQNSHTFSPFLVKSMATPKPV-----TVTSKKNSTVFPLGEK-PRSA-VTSTQSVKL 69

Query: 79  LTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALL 138
           LTR+EQL+LL+KAEKAGLLSAAEK GLSLS+IEKLGLLSKAEE GVLSAATDP+TPG+L 
Sbjct: 70  LTRMEQLRLLTKAEKAGLLSAAEKAGLSLSTIEKLGLLSKAEELGVLSAATDPSTPGSLF 129

Query: 139 TLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQK 192
           TLS  LLLLGP  VYLVPED   EV LQ VVAL+ VVGGSA FA S+ VSNLQK
Sbjct: 130 TLSFVLLLLGPLFVYLVPEDNVVEVGLQAVVALICVVGGSAGFAGSSFVSNLQK 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726766|ref|NP_001235602.1| uncharacterized protein LOC100500269 [Glycine max] gi|255629883|gb|ACU15292.1| unknown [Glycine max]

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 131/193 (67%), Positives = 149/193 (77%), Gaps = 2/193 (1%)

Query: 1   MEAAAFYGGSRGIPCIHPPSSSSKRNAFSS-LLVQSMATQKPLPSAAKTVGSRKNSVVFP 59
           ME +A+   +  I       +     +FSS +LV+SMAT KPLPS ++TVGSRKNS VFP
Sbjct: 21  MEVSAYICNNNFIFSSSRAITQKSSASFSSPMLVKSMATPKPLPSVSRTVGSRKNSTVFP 80

Query: 60  LGEPGPRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKA 119
           LGE  PR++P   +PP+KLLTR+EQLKLLSKAEKAGLLSAAEKFG SLS+IE+LGLLSKA
Sbjct: 81  LGEQ-PRSSPATATPPIKLLTRMEQLKLLSKAEKAGLLSAAEKFGFSLSTIERLGLLSKA 139

Query: 120 EEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSA 179
           EE GVLSAATDP TP  LLTLSLGLL+LGP  VY VPED    V LQ VVALVSV+GGSA
Sbjct: 140 EELGVLSAATDPGTPRTLLTLSLGLLILGPLFVYFVPEDNLGLVGLQVVVALVSVIGGSA 199

Query: 180 AFAASNLVSNLQK 192
             AASN VSNLQK
Sbjct: 200 GLAASNFVSNLQK 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241507|ref|NP_196422.1| uncharacterized protein [Arabidopsis thaliana] gi|6562319|emb|CAB62617.1| putative protein [Arabidopsis thaliana] gi|332003855|gb|AED91238.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/167 (66%), Positives = 128/167 (76%), Gaps = 17/167 (10%)

Query: 29  SSLLVQSMATQKPLPSAA-KTVGSRKNSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKL 87
           SSL V SMA +KP PSAA +T+ S+K++                 +P VKLLTRVEQLKL
Sbjct: 8   SSLTVHSMANKKPSPSAATRTITSKKSTA----------------TPQVKLLTRVEQLKL 51

Query: 88  LSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLL 147
           L+KAEKAGLLS AEK G SLS+IE+LGLL+KAEEFGVLSAAT+P TPG L TLSLGLLLL
Sbjct: 52  LTKAEKAGLLSLAEKSGFSLSTIERLGLLTKAEEFGVLSAATNPETPGTLFTLSLGLLLL 111

Query: 148 GPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQKSS 194
           GP   Y+VPEDY WEV +Q +VAL+SV+GGSAAFAAS  VSNLQKS 
Sbjct: 112 GPVFAYVVPEDYTWEVVIQVLVALLSVLGGSAAFAASGFVSNLQKSD 158

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17978981|gb|AAL47451.1| AT5g08050/F13G24_250 [Arabidopsis thaliana] gi|33589718|gb|AAQ22625.1| At5g08050/F13G24_250 [Arabidopsis thaliana]

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/167 (66%), Positives = 128/167 (76%), Gaps = 17/167 (10%)

Query: 29  SSLLVQSMATQKPLPSAA-KTVGSRKNSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKL 87
           SSL V SMA +KP PSAA +T+ S+K++                 +P VKLLTRVEQLKL
Sbjct: 8   SSLTVHSMANKKPSPSAATRTITSKKSTA----------------TPQVKLLTRVEQLKL 51

Query: 88  LSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLL 147
           L+KAEKAGLLS AEK G SLS+IE+LGLL+KAEEFGVLSAAT+P TPG L TLSLGLLLL
Sbjct: 52  LTKAEKAGLLSLAEKSGFSLSTIERLGLLTKAEEFGVLSAATNPETPGTLFTLSLGLLLL 111

Query: 148 GPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQKSS 194
           GP   Y+VPEDY WEV +Q +VAL+SV+GGSAAFAAS  VSNLQKS 
Sbjct: 112 GPVFAYVVPEDYTWEVVIQVLVALLSVLGGSAAFAASGFVSNLQKSD 158

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116780843|gb|ABK21842.1| unknown [Picea sitchensis]

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/152 (67%), Positives = 118/152 (77%), Gaps = 6/152 (3%)

Query: 47  KTVGSRKNSVVFPLGEPG----PRNAPLATSPPVKLLTRVEQLKLLSKAEKAGLLSAAEK 102
           K VG  +   VFPLG+      P+N    +S  +KLL+RVEQLKLLSKAEKAGLLSAAEK
Sbjct: 34  KAVGGTRQVKVFPLGDKSAVLRPKNEFNGSS--IKLLSRVEQLKLLSKAEKAGLLSAAEK 91

Query: 103 FGLSLSSIEKLGLLSKAEEFGVLSAATDPATPGALLTLSLGLLLLGPSCVYLVPEDYPWE 162
            GLSLS IE LGLLSKAEE G+LS+ATDP TPGALL L++ LL+ GP CVY VP+D  WE
Sbjct: 92  SGLSLSKIESLGLLSKAEELGILSSATDPNTPGALLNLAIALLIAGPLCVYFVPDDSSWE 151

Query: 163 VALQGVVALVSVVGGSAAFAASNLVSNLQKSS 194
           VALQ V+AL+SVVGG AAFA SNLVS LQKS+
Sbjct: 152 VALQVVIALLSVVGGPAAFAGSNLVSKLQKST 183

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2142848	158	AT5G08050 "AT5G08050" [Arabido	0.768	0.943	0.487	3.5e-27
TAIR|locus:2027257	198	AT1G74730 "AT1G74730" [Arabido	0.427	0.419	0.376	3.6e-09

TAIR|locus:2142848 AT5G08050 "AT5G08050" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 81/166 (48%), Positives = 93/166 (56%)

Query:    29 SSLLVQSMATQKPLPSAA-KTVGSRKNSVVFPLGEPGPRNAPLATSPPVKLLTRVEQLKL 87
             SSL V SMA +KP PSAA +T+ S+K++               AT P VKLLTRVEQLKL
Sbjct:     8 SSLTVHSMANKKPSPSAATRTITSKKST---------------AT-PQVKLLTRVEQLKL 51

Query:    88 LSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDXXXXXXXXXXXXXXXXX 147
             L+KAEKAGLLS AEK G SLS+IE+LGLL+KAEEFGVLSAAT+                 
Sbjct:    52 LTKAEKAGLLSLAEKSGFSLSTIERLGLLTKAEEFGVLSAATNPETPGTLFTLSLGLLLL 111

Query:   148 XXXCVYLVPEDYPWEXXXXXXXXXXXXXXXXXXXXXXNLVSNLQKS 193
                  Y+VPEDY WE                        VSNLQKS
Sbjct:   112 GPVFAYVVPEDYTWEVVIQVLVALLSVLGGSAAFAASGFVSNLQKS 157

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

TAIR|locus:2027257 AT1G74730 "AT1G74730" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 32/85 (37%), Positives = 46/85 (54%)

Query:    76 VKLLTRVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDXXXXX 135
             V +  ++E+ K+LS  EK+GLLS AE  GL+LSS+EKL + SKAE+ G+LS   +     
Sbjct:    78 VDVFKKLEKRKVLSNVEKSGLLSKAEGLGLTLSSLEKLKVFSKAEDLGLLSLLENLAGTS 137

Query:   136 XXXXXXXX--XXXXXXXCVYLVPED 158
                               V L+P+D
Sbjct:   138 PAVLASAALPALTAAIVAVVLIPDD 162


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.128   0.357    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      194       152   0.00073  105 3  11 23  0.41    32
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  547 (58 KB)
  Total size of DFA:  112 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.71u 0.07s 15.78t   Elapsed:  00:00:01
  Total cpu time:  15.71u 0.07s 15.78t   Elapsed:  00:00:01
  Start:  Fri May 10 19:03:41 2013   End:  Fri May 10 19:03:42 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
pfam06549	116	pfam06549, DUF1118, Protein of unknown function (D	2e-39

>gnl|CDD|191553 pfam06549, DUF1118, Protein of unknown function (DUF1118)

 Score =  130 bits (329), Expect = 2e-39
 Identities = 68/115 (59%), Positives = 87/115 (75%), Gaps = 2/115 (1%)

Query: 81  RVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPA--TPGALL 138
            +E+LK+LSK EKAGLLS AE+ GL+LSSIEKLGLLSKAE+ G+LS A + A  +PGAL 
Sbjct: 1   NLEKLKVLSKVEKAGLLSKAEELGLTLSSIEKLGLLSKAEDLGLLSLAENAAGTSPGALA 60

Query: 139 TLSLGLLLLGPSCVYLVPEDYPWEVALQGVVALVSVVGGSAAFAASNLVSNLQKS 193
           +++L LL+   + V LVP+D  W VA+Q VVAL  VVGGSA F  S ++S LQ+S
Sbjct: 61  SVALPLLVAAIAAVVLVPDDSTWLVAVQAVVALALVVGGSALFVGSVVLSGLQES 115

This family consists of several hypothetical plant proteins of unknown function. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
PF06549	116	DUF1118: Protein of unknown function (DUF1118); In	100.0
PF06549	116	DUF1118: Protein of unknown function (DUF1118); In	99.48

>PF06549 DUF1118: Protein of unknown function (DUF1118); InterPro: IPR009500 This family consists of several hypothetical plant proteins of unknown function

Probab=100.00  E-value=8.2e-48  Score=302.79  Aligned_cols=114  Identities=75%  Similarity=1.032  Sum_probs=112.7

Q ss_pred             HHHHhhhHHHHHHhchhhHHHHcCCchhhhhhhcchhhhhhcccccccCCCC--ChhhHHHHHHHHHhhcceeEEEecCC
Q 029409           81 RVEQLKLLSKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAATDPA--TPGALLTLSLGLLLLGPSCVYLVPED  158 (194)
Q Consensus        81 ~vEk~~LLskaEkaGLLS~aE~~GlSLs~iE~LGlLS~aE~lg~Ls~a~~~~--tPgaL~slaL~LlvAg~a~v~lvPdd  158 (194)
                      |+||+|+|||+||+||||+||++|+|||+|||+|||||||++|+||+++|+.  +||+|++++||++++||++||+||||
T Consensus         1 ~~Ek~KlLs~~EkaGLLS~AE~~GlsLS~iEkLgLlSkAE~LGlLs~a~~~~~~~P~~L~slaL~ll~ag~~~v~~vPdd   80 (116)
T PF06549_consen    1 RVEKLKLLSKAEKAGLLSKAEKAGLSLSSIEKLGLLSKAEELGLLSLAEDPASSSPGALASLALPLLVAGPAAVYLVPDD   80 (116)
T ss_pred             ChHHHHHHHHHHHhhhHHHHHHcCCcHHHHHHhccccchHHhhhhHhccccccCChHHHHHHHHHHHHhhhheEEEecCC
Confidence            6899999999999999999999999999999999999999999999999987  99999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhccCC
Q 029409          159 YPWEVALQGVVALVSVVGGSAAFAASNLVSNLQKSS  194 (194)
Q Consensus       159 s~~~Va~Q~vvA~~~vvg~~a~f~gS~~ls~LQ~s~  194 (194)
                      |+|+|++|+|+|++|++|++++|+||+++++|||+|
T Consensus        81 s~~~va~Q~vvA~~~~vg~~a~f~gS~~l~~LQ~s~  116 (116)
T PF06549_consen   81 STWLVALQAVVALVCVVGGSAAFAGSSLLSKLQESD  116 (116)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcCC
Confidence            999999999999999999999999999999999998

>PF06549 DUF1118: Protein of unknown function (DUF1118); InterPro: IPR009500 This family consists of several hypothetical plant proteins of unknown function

Probab=99.48  E-value=1.7e-14  Score=114.39  Aligned_cols=56  Identities=55%  Similarity=0.681  Sum_probs=51.4

Q ss_pred             CCchhhhhHHHHhhhHHHHHHhch-hhHHHHcCCchhhhhhhcchhhhhhcccccccC
Q 029409           73 SPPVKLLTRVEQLKLLSKAEKAGL-LSAAEKFGLSLSSIEKLGLLSKAEEFGVLSAAT  129 (194)
Q Consensus        73 ~~~~~vL~~vEk~~LLskaEkaGL-LS~aE~~GlSLs~iE~LGlLS~aE~lg~Ls~a~  129 (194)
                      .|+.|+|+|+||.||||+|||+|+ ||++||+|+ |||.|++|+||.+|+++..++..
T Consensus         2 ~Ek~KlLs~~EkaGLLS~AE~~GlsLS~iEkLgL-lSkAE~LGlLs~a~~~~~~~P~~   58 (116)
T PF06549_consen    2 VEKLKLLSKAEKAGLLSKAEKAGLSLSSIEKLGL-LSKAEELGLLSLAEDPASSSPGA   58 (116)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHcCCcHHHHHHhcc-ccchHHhhhhHhccccccCChHH
Confidence            578999999999999999999999 999999999 99999999999999998544433

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00