Citrus Sinensis ID: 029412

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHccccccccEEEEccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEEccccccccccccccEEEEcccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcccccccEEEEEccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEcccccEccEcccccEEccHHHcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHEcccccHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
MIDFSRVQKELQECSKDIeasgikvtpvsdnlvhltgiipgpvgtpyeggtfrlditlpdgypfeppkmhfvtkvwhpnissqsgAICLDILkdqwspalTLKTALLSVQALlsapapddpqdAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEmgfpesqvrSTLEIVGGDENMALEKLLSS
Flexible Loop (DISEMBL)
MIDFSRVQKELQECSKdieasgikvtpvsDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVemgfpesqvrstleivggdenmalekllss
Low Complexity Region (SEG)
MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS
Disordered region (IsUnstruct)
********************SGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSA********AVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVE*****************************
Disordered Region (DISOPRED)
**DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA***************EMGFPESQVRSTLEIVGGDENMALEKLLS*
Disordered Region (DISEMBL)
MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS
Disordered Region (DISPRO)
*IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q9FI61	192	Ubiquitin-conjugating enz	yes	no	0.989	1.0	0.762	4e-87
P52484	214	Probable ubiquitin-conjug	no	no	0.865	0.785	0.514	5e-48
O74810	217	Ubiquitin-conjugating enz	yes	no	0.891	0.797	0.511	2e-46
P21734	215	Ubiquitin-conjugating enz	yes	no	0.804	0.725	0.550	3e-43
P61087	200	Ubiquitin-conjugating enz	yes	no	0.994	0.965	0.502	8e-43
P61086	200	Ubiquitin-conjugating enz	yes	no	0.994	0.965	0.502	8e-43
P61085	200	Ubiquitin-conjugating enz	yes	no	0.994	0.965	0.502	8e-43
P52486	199	Ubiquitin-conjugating enz	yes	no	0.938	0.914	0.494	3e-42
Q8S920	147	Ubiquitin-conjugating enz	no	no	0.731	0.965	0.493	1e-33
P15732	148	Ubiquitin-conjugating enz	no	no	0.731	0.959	0.506	1e-33

>sp|Q9FI61|UBC27_ARATH Ubiquitin-conjugating enzyme E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1

 Score =  320 bits (820), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 148/194 (76%), Positives = 174/194 (89%), Gaps = 2/194 (1%)

Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           MIDFSR+QKELQ+C ++ ++SGI+V P SDNL  LTG IPGP+GTPYEGGTF++DIT+PD
Sbjct: 1   MIDFSRIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPD 60

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
           GYPFEPPKM F TKVWHPNISSQSGAICLDILKDQWSPALTLKTAL+S+QALLSAP P D
Sbjct: 61  GYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKD 120

Query: 121 PQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIV 180
           PQDAVVA+QY+K++Q F+STARYWTE+FAK SSL  EEKV++LVEMGF ++QVRS +E  
Sbjct: 121 PQDAVVAEQYMKNYQVFVSTARYWTETFAKKSSL--EEKVKRLVEMGFGDAQVRSAIESS 178

Query: 181 GGDENMALEKLLSS 194
           GGDEN+ALEKL S+
Sbjct: 179 GGDENLALEKLCSA 192

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|P52484|UBC21_CAEEL Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=3 SV=3

 Score =  190 bits (483), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 123/175 (70%), Gaps = 7/175 (4%)

Query: 4   FSRVQKELQECSK--DIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
            +RV ++ +E +   DI  +GI V    +NL+ + G I GP GTPY GGTF + + +P+ 
Sbjct: 20  LARVTRKCKEVANASDITEAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEH 79

Query: 62  YPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDP 121
           YPFEPPK  FVT++WHPNISSQ+G ICLDILKD+W+ +LTL+T LLS+QA+L +P P DP
Sbjct: 80  YPFEPPKAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDP 139

Query: 122 QDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVE----EKVQKLVEMGFPESQ 172
           QDAVVA+Q++ ++  F +TA YWT  FA  S   VE     KV +L+EMG  E++
Sbjct: 140 QDAVVAKQFINNYPMFTATAVYWTSYFA-NSKKDVEPDFNRKVGRLIEMGIRETE 193

Catalyzes the covalent attachment of ubiquitin to other proteins.

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|O74810|UBC1_SCHPO Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc1 PE=3 SV=2

 Score =  185 bits (469), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/176 (51%), Positives = 125/176 (71%), Gaps = 3/176 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KEL +  +D +A GI+V  ++D++ HL G+  GP GTPYEGG F +DI +P  YPF 
Sbjct: 8   RIAKELADVQQDKQA-GIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFR 66

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPKM+F TK++HPN+SSQ+GAICLDILKDQWSP  T+K+AL+S+Q+LL  P P +PQDA 
Sbjct: 67  PPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQ 126

Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVG 181
           VAQ YL+++Q F+ TAR WT S+A   + GV+   +   E G  +  + + L+  G
Sbjct: 127 VAQVYLQNYQQFVRTAREWTSSYAAAPA-GVDLDAEN-TEFGGIDPNIITNLQQFG 180

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the HRD1 ubiquitin ligase complex, which is part of the ERAD-L and ERAD-M pathways responsible for the rapid degradation of soluble lumenal and membrane proteins with misfolded lumenal domains (ERAD-L), or ER-membrane proteins with misfolded transmembrane domains (ERAD-M).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P21734|UBC1_YEAST Ubiquitin-conjugating enzyme E2 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC1 PE=1 SV=1

 Score =  174 bits (441), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 114/158 (72%), Gaps = 2/158 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           R+ KE+Q   KD  A+ I +  VS+ ++ HL G   GP GTPYEGG F +DI +P  YPF
Sbjct: 6   RIMKEIQAV-KDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
           +PPKM F TKV+HPNISS +GAICLDILK+ WSP +TLK+AL+S+QALL +P P+DPQDA
Sbjct: 65  KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA 124

Query: 125 VVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQK 162
            VAQ YL+D ++F  TA  WT  +A  +S G +  V++
Sbjct: 125 EVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNVEE 162

Catalyzes the covalent attachment of ubiquitin to other proteins. Functions in degradation of misfolded or regulated proteins localized in the endoplasmic reticulum (ER) lumen or membrane via the ubiquitin-proteasome system. Cognate E2 conjugating enzyme for the HRD1 ubiquitin ligase complex, which is part of the ERAD-L and ERAD-M pathways responsible for the rapid degradation of soluble lumenal and membrane proteins with misfolded lumenal domains (ERAD-L), or ER-membrane proteins with misfolded transmembrane domains (ERAD-M).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P61087|UBE2K_MOUSE Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=1 SV=3

 Score =  173 bits (438), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 99/197 (50%), Positives = 127/197 (64%), Gaps = 4/197 (2%)

Query: 2   IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
           I   R+++E +E  K  E S   IKV  V +N   L G I GP  TPYEGG ++L+I +P
Sbjct: 4   IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 63

Query: 60  DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
           + YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PD
Sbjct: 64  ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 123

Query: 120 DPQDAVVAQQYLKDHQTFLSTARYWTESFAKT--SSLGVEEKVQKLVEMGFPESQVRSTL 177
           DPQDAVVA QY ++ + F  TAR W   +A    SS    +K++ L  MGF  + V   L
Sbjct: 124 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVAL 183

Query: 178 EIVGGDENMALEKLLSS 194
                D   A E LLS+
Sbjct: 184 SSKSWDVETATELLLSN 200

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro, in the presence or in the absence of BRCA1-BARD1 E3 ubiquitin-protein ligase complex, catalyzes the synthesis of 'Lys-48'-linked polyubiquitin chains. Does not transfer ubiquitin directly to but elongates monoubiquitinated substrate protein. Mediates the selective degradation of short-lived and abnormal proteins, such as the endoplasmic reticulum-associated degradation (ERAD) of misfolded lumenal proteins. Ubiquitinates huntingtin. May mediate foam cell formation by the suppression of apoptosis of lipid-bearing macrophages through ubiquitination and subsequence degradation of p53/TP53. Proposed to be involved in ubiquitination and proteolytic processing of NF-kappa-B; in vitro supports ubiquitination of NFKB1. Involved in stabilization of CASP12 during ER stress-mediated beta-amyloid neurotoxicity probably by inhibiting proteasome activity; in vitro ubiquitinates CASP12.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P61086|UBE2K_HUMAN Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3

 Score =  173 bits (438), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 99/197 (50%), Positives = 127/197 (64%), Gaps = 4/197 (2%)

Query: 2   IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
           I   R+++E +E  K  E S   IKV  V +N   L G I GP  TPYEGG ++L+I +P
Sbjct: 4   IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 63

Query: 60  DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
           + YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PD
Sbjct: 64  ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 123

Query: 120 DPQDAVVAQQYLKDHQTFLSTARYWTESFAKT--SSLGVEEKVQKLVEMGFPESQVRSTL 177
           DPQDAVVA QY ++ + F  TAR W   +A    SS    +K++ L  MGF  + V   L
Sbjct: 124 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVAL 183

Query: 178 EIVGGDENMALEKLLSS 194
                D   A E LLS+
Sbjct: 184 SSKSWDVETATELLLSN 200

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro, in the presence or in the absence of BRCA1-BARD1 E3 ubiquitin-protein ligase complex, catalyzes the synthesis of 'Lys-48'-linked polyubiquitin chains. Does not transfer ubiquitin directly to but elongates monoubiquitinated substrate protein. Mediates the selective degradation of short-lived and abnormal proteins, such as the endoplasmic reticulum-associated degradation (ERAD) of misfolded lumenal proteins. Ubiquitinates huntingtin. May mediate foam cell formation by the suppression of apoptosis of lipid-bearing macrophages through ubiquitination and subsequence degradation of p53/TP53. Proposed to be involved in ubiquitination and proteolytic processing of NF-kappa-B; in vitro supports ubiquitination of NFKB1. In case of infection by cytomegaloviruses may be involved in the US11-dependent degradation of MHC class I heavy chains following their export from the ER to the cytosol. In case of viral infections may be involved in the HPV E7 protein-dependent degradation of RB1.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P61085|UBE2K_BOVIN Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3

 Score =  173 bits (438), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 99/197 (50%), Positives = 127/197 (64%), Gaps = 4/197 (2%)

Query: 2   IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
           I   R+++E +E  K  E S   IKV  V +N   L G I GP  TPYEGG ++L+I +P
Sbjct: 4   IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 63

Query: 60  DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
           + YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PD
Sbjct: 64  ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 123

Query: 120 DPQDAVVAQQYLKDHQTFLSTARYWTESFAKT--SSLGVEEKVQKLVEMGFPESQVRSTL 177
           DPQDAVVA QY ++ + F  TAR W   +A    SS    +K++ L  MGF  + V   L
Sbjct: 124 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVAL 183

Query: 178 EIVGGDENMALEKLLSS 194
                D   A E LLS+
Sbjct: 184 SSKSWDVETATELLLSN 200

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro, in the presence or in the absence of BRCA1-BARD1 E3 ubiquitin-protein ligase complex, catalyzes the synthesis of 'Lys-48'-linked polyubiquitin chains. Does not transfer ubiquitin directly to but elongates monoubiquitinated substrate protein. Mediates the selective degradation of short-lived and abnormal proteins, such as the endoplasmic reticulum-associated degradation (ERAD) of misfolded lumenal proteins. Ubiquitinates huntingtin. May mediate foam cell formation by the suppression of apoptosis of lipid-bearing macrophages through ubiquitination and subsequence degradation of p53/TP53 (By similarity). Proposed to be involved in ubiquitination and proteolytic processing of NF-kappa-B; in vitro supports ubiquitination of NFKB1.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P52486|UBCD4_DROME Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2

 Score =  171 bits (432), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 128/190 (67%), Gaps = 8/190 (4%)

Query: 5   SRVQKELQEC--SKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
           SR+++E +E   S++I    IK+  V+D+   L G I GP  TPYEGG F L+I +P+ Y
Sbjct: 7   SRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETY 66

Query: 63  PFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQ 122
           PF PPK+ F+T++WHPNISS +GAICLDILKD W+ A+TL+T LLS+QALL+A  PDDPQ
Sbjct: 67  PFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQ 126

Query: 123 DAVVAQQYLKDHQTFLSTARYWTESFAKTSSL--GVEEKVQKLVEMGFPESQVRSTLEIV 180
           DAVVA Q+   +  FL TA++WT ++A         + K+Q+L +MG  E + R+ L   
Sbjct: 127 DAVVAYQFKDKYDLFLLTAKHWTNAYAGGPHTFPDCDSKIQRLRDMGIDEHEARAVL--- 183

Query: 181 GGDENMALEK 190
              EN  LEK
Sbjct: 184 -SKENWNLEK 192

Catalyzes the covalent attachment of ubiquitin to other proteins.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q8S920|UBC5A_ORYSJ Ubiquitin-conjugating enzyme E2 5A OS=Oryza sativa subsp. japonica GN=UBC5A PE=2 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/144 (49%), Positives = 94/144 (65%), Gaps = 2/144 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+QKEL++  KD   S     PV +++ H    I GP  +PY GG F + I  P  YPF+
Sbjct: 5   RIQKELKDLQKDPPTS-CSAGPVGEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFK 63

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F TKV+HPNI+S +G+ICLDILKDQWSPALT+   LLS+ +LL+ P PDDP    
Sbjct: 64  PPKVAFRTKVFHPNINS-NGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPE 122

Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A  Y  D   + +TAR WT+ +A
Sbjct: 123 IAHMYKTDRHKYENTARTWTQRYA 146

E2 conjugating enzyme that associates with the E3 ubiquitin-protein ligase EL5 to mediates ubiquitination of target proteins.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P15732|UBC5_YEAST Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC5 PE=1 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/144 (50%), Positives = 93/144 (64%), Gaps = 2/144 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KEL +  +D  AS     PV D+L H    I GP  +PY GG F L I  P  YPF+
Sbjct: 6   RIAKELSDLGRDPPAS-CSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFK 64

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK++F TK++HPNI+S SG ICLDILKDQWSPALTL   LLS+ +LL+   PDDP    
Sbjct: 65  PPKVNFTTKIYHPNINS-SGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPE 123

Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +AQ Y  D   + +TA+ WT+ +A
Sbjct: 124 IAQIYKTDKAKYEATAKEWTKKYA 147

Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selective degradation of short-lived and abnormal proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
255540105	194	ubiquitin-conjugating enzyme E2-25kD, pu	0.994	0.994	0.865	2e-95
224136282	194	predicted protein [Populus trichocarpa]	0.994	0.994	0.865	5e-95
224122132	194	predicted protein [Populus trichocarpa]	0.994	0.994	0.854	4e-94
449440514	194	PREDICTED: ubiquitin-conjugating enzyme	0.994	0.994	0.854	6e-94
356508845	192	PREDICTED: ubiquitin-conjugating enzyme	0.989	1.0	0.854	5e-92
357464965	192	Ubiquitin carrier protein [Medicago trun	0.989	1.0	0.822	1e-90
357464967	216	Ubiquitin carrier protein [Medicago trun	0.989	0.888	0.822	1e-90
82621188	194	ubiquitin-conjugating protein-like [Sola	1.0	1.0	0.809	2e-90
82623381	194	ubiquitin conjugating enzyme-like [Solan	1.0	1.0	0.809	2e-90
388513859	193	unknown [Lotus japonicus]	0.989	0.994	0.839	3e-90

>gi|255540105|ref|XP_002511117.1| ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis] gi|223550232|gb|EEF51719.1| ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]

 Score =  353 bits (906), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 167/193 (86%), Positives = 180/193 (93%)

Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           M+DF+RVQKELQECS+D+E+SGIKVTP SDNL  LTG IPGP+GTPYEGGTF++DI+LPD
Sbjct: 1   MMDFARVQKELQECSRDVESSGIKVTPKSDNLSRLTGTIPGPIGTPYEGGTFQIDISLPD 60

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
           GYPFEPPKM F TKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAP PDD
Sbjct: 61  GYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDD 120

Query: 121 PQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIV 180
           PQDAVVAQQYLKD+QTF+ TARYWTE+FAKTSSLGVEEKVQKLVEMGFPE  VRSTLE V
Sbjct: 121 PQDAVVAQQYLKDYQTFVGTARYWTETFAKTSSLGVEEKVQKLVEMGFPEGLVRSTLEAV 180

Query: 181 GGDENMALEKLLS 193
            GDEN+ALEKL S
Sbjct: 181 SGDENLALEKLCS 193

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136282|ref|XP_002322290.1| predicted protein [Populus trichocarpa] gi|118481915|gb|ABK92892.1| unknown [Populus trichocarpa] gi|222869286|gb|EEF06417.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (902), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 167/193 (86%), Positives = 178/193 (92%)

Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           MIDF+RVQKELQECS+D+EASGIKV P SDNL  LTG IPGP+GTPYEGGTF++DITLPD
Sbjct: 1   MIDFARVQKELQECSRDMEASGIKVAPKSDNLGRLTGTIPGPIGTPYEGGTFQIDITLPD 60

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
           GYPFEPPKM F TKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAP PDD
Sbjct: 61  GYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPEPDD 120

Query: 121 PQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIV 180
           PQDAVVAQQYL+D+QTF+ TARYWTE+FAKTSSLGVEEKVQKLVEMGFPES  R  LE V
Sbjct: 121 PQDAVVAQQYLRDYQTFVGTARYWTETFAKTSSLGVEEKVQKLVEMGFPESLARGALESV 180

Query: 181 GGDENMALEKLLS 193
           GGDEN+ALEKL S
Sbjct: 181 GGDENLALEKLCS 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122132|ref|XP_002318760.1| predicted protein [Populus trichocarpa] gi|222859433|gb|EEE96980.1| predicted protein [Populus trichocarpa]

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 165/193 (85%), Positives = 176/193 (91%)

Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           MIDF+RVQKELQECS+D+EASGIKV P SDNL  LTG IPGP+ +PYEGGTF++DITLPD
Sbjct: 1   MIDFARVQKELQECSRDMEASGIKVAPKSDNLARLTGTIPGPISSPYEGGTFQIDITLPD 60

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
           GYPFEPPKM F TKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAP PDD
Sbjct: 61  GYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPEPDD 120

Query: 121 PQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIV 180
           PQDAVVAQQYL+D QTF+ TARYWTE+FAKTSSLGVEEKVQKLVEMGFPE+  RS LE V
Sbjct: 121 PQDAVVAQQYLRDRQTFVGTARYWTETFAKTSSLGVEEKVQKLVEMGFPEALARSALESV 180

Query: 181 GGDENMALEKLLS 193
           GGDEN ALEKL S
Sbjct: 181 GGDENSALEKLCS 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440514|ref|XP_004138029.1| PREDICTED: ubiquitin-conjugating enzyme E2 27-like [Cucumis sativus] gi|449501428|ref|XP_004161363.1| PREDICTED: ubiquitin-conjugating enzyme E2 27-like [Cucumis sativus]

 Score =  348 bits (893), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 165/193 (85%), Positives = 179/193 (92%)

Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           MIDF+RVQKELQEC+KDIEASGI+VTP SD+L HL G IPGP+ TPYEGG F++DITLPD
Sbjct: 1   MIDFARVQKELQECTKDIEASGIRVTPKSDSLSHLLGTIPGPISTPYEGGIFQIDITLPD 60

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
           GYPFEPPKM F TKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAP PDD
Sbjct: 61  GYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDD 120

Query: 121 PQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIV 180
           PQDAVVAQQYL+D+QTF  TARYWTE+FAKTSSLGVEEKVQKL+EMGFPE+QVRS+LE V
Sbjct: 121 PQDAVVAQQYLRDYQTFAGTARYWTETFAKTSSLGVEEKVQKLMEMGFPEAQVRSSLEAV 180

Query: 181 GGDENMALEKLLS 193
           G DEN+ALEKL S
Sbjct: 181 GWDENLALEKLCS 193

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508845|ref|XP_003523164.1| PREDICTED: ubiquitin-conjugating enzyme E2 27-like isoform 1 [Glycine max] gi|356508847|ref|XP_003523165.1| PREDICTED: ubiquitin-conjugating enzyme E2 27-like isoform 2 [Glycine max]

 Score =  342 bits (876), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 164/192 (85%), Positives = 175/192 (91%)

Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           MID +RVQKEL ECSKD E SGIKV P SDNLV L G IPGPVGTPYEGG F++DITLPD
Sbjct: 1   MIDLARVQKELVECSKDAEGSGIKVCPKSDNLVLLIGTIPGPVGTPYEGGIFQIDITLPD 60

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
           GYPFEPPKM F TKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAP PDD
Sbjct: 61  GYPFEPPKMKFKTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDD 120

Query: 121 PQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIV 180
           PQDAVVAQQYLKD+QTF++TARYWTESFAK SS G+E+KVQKLVEMGFPE+QVRS LE V
Sbjct: 121 PQDAVVAQQYLKDYQTFVNTARYWTESFAKESSRGIEDKVQKLVEMGFPEAQVRSILEAV 180

Query: 181 GGDENMALEKLL 192
           GGDEN+ALE+LL
Sbjct: 181 GGDENLALERLL 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464965|ref|XP_003602764.1| Ubiquitin carrier protein [Medicago truncatula] gi|355491812|gb|AES73015.1| Ubiquitin carrier protein [Medicago truncatula] gi|388519573|gb|AFK47848.1| unknown [Medicago truncatula]

 Score =  337 bits (864), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 158/192 (82%), Positives = 175/192 (91%)

Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           M+DF+RVQKEL +C KD E SGI+V   SDNLV+L G IPGP GTPY+GG F++DITLPD
Sbjct: 1   MVDFARVQKELADCRKDAEGSGIRVALKSDNLVNLIGTIPGPTGTPYDGGVFQIDITLPD 60

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
           GYPFEPPKM F TKVWHPNISSQ+GAICLDILKDQWSPALTLKTALLSVQALLSAP PDD
Sbjct: 61  GYPFEPPKMRFSTKVWHPNISSQNGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDD 120

Query: 121 PQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIV 180
           PQDAVVAQQYLKD+QTF++TARYWTESFAKTSS GVE+KVQKLVEMGFPE+QVR+ LE V
Sbjct: 121 PQDAVVAQQYLKDYQTFVNTARYWTESFAKTSSRGVEDKVQKLVEMGFPEAQVRNILEAV 180

Query: 181 GGDENMALEKLL 192
           GGDEN+ALE+LL
Sbjct: 181 GGDENLALERLL 192

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464967|ref|XP_003602765.1| Ubiquitin carrier protein [Medicago truncatula] gi|355491813|gb|AES73016.1| Ubiquitin carrier protein [Medicago truncatula]

 Score =  337 bits (864), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 158/192 (82%), Positives = 175/192 (91%)

Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           M+DF+RVQKEL +C KD E SGI+V   SDNLV+L G IPGP GTPY+GG F++DITLPD
Sbjct: 25  MVDFARVQKELADCRKDAEGSGIRVALKSDNLVNLIGTIPGPTGTPYDGGVFQIDITLPD 84

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
           GYPFEPPKM F TKVWHPNISSQ+GAICLDILKDQWSPALTLKTALLSVQALLSAP PDD
Sbjct: 85  GYPFEPPKMRFSTKVWHPNISSQNGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDD 144

Query: 121 PQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIV 180
           PQDAVVAQQYLKD+QTF++TARYWTESFAKTSS GVE+KVQKLVEMGFPE+QVR+ LE V
Sbjct: 145 PQDAVVAQQYLKDYQTFVNTARYWTESFAKTSSRGVEDKVQKLVEMGFPEAQVRNILEAV 204

Query: 181 GGDENMALEKLL 192
           GGDEN+ALE+LL
Sbjct: 205 GGDENLALERLL 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82621188|gb|ABB86282.1| ubiquitin-conjugating protein-like [Solanum tuberosum]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 157/194 (80%), Positives = 174/194 (89%)

Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           M+D +RVQKEL EC++D++ SGI VT   D+L HL G IPGPVGTPYEGGTF++DITL D
Sbjct: 1   MVDLARVQKELHECNRDVQVSGINVTLKGDSLTHLIGTIPGPVGTPYEGGTFKIDITLTD 60

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
           GYPFEPPKM F TKVWHPNISSQSGAICLDILKDQWSPALTLKTALLS+QALLSAP PDD
Sbjct: 61  GYPFEPPKMKFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSIQALLSAPEPDD 120

Query: 121 PQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIV 180
           PQDAVVAQQYL+DHQTF+ TARYWTE+FAKTS+L  +EK+QKLVEMGFPE+QVRSTLE  
Sbjct: 121 PQDAVVAQQYLRDHQTFVGTARYWTETFAKTSTLAADEKIQKLVEMGFPEAQVRSTLEAN 180

Query: 181 GGDENMALEKLLSS 194
           G DENMALEKLLSS
Sbjct: 181 GWDENMALEKLLSS 194

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82623381|gb|ABB87105.1| ubiquitin conjugating enzyme-like [Solanum tuberosum]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 157/194 (80%), Positives = 174/194 (89%)

Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           M+D +RVQKEL EC++D++ SGI VT   D+L HL G IPGPVGTPYEGGTF++DITL D
Sbjct: 1   MVDLTRVQKELHECNRDVQVSGINVTLKGDSLTHLIGTIPGPVGTPYEGGTFKIDITLTD 60

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
           GYPFEPPKM F TKVWHPNISSQSGAICLDILKDQWSPALTLKTALLS+QALLSAP PDD
Sbjct: 61  GYPFEPPKMKFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSIQALLSAPEPDD 120

Query: 121 PQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIV 180
           PQDAVVAQQYL+DHQTF+ TARYWTE+FAKTS+L  +EK+QKLVEMGFPE+QVRSTLE  
Sbjct: 121 PQDAVVAQQYLRDHQTFVGTARYWTETFAKTSTLAADEKIQKLVEMGFPEAQVRSTLEAN 180

Query: 181 GGDENMALEKLLSS 194
           G DENMALEKLLSS
Sbjct: 181 GWDENMALEKLLSS 194

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513859|gb|AFK44991.1| unknown [Lotus japonicus]

 Score =  336 bits (861), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 162/193 (83%), Positives = 175/193 (90%), Gaps = 1/193 (0%)

Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
           MIDF+RVQKEL ECSKD E SGI+V P  D +LV L G IPGPVGTPYEGG F++DITLP
Sbjct: 1   MIDFARVQKELVECSKDAEGSGIRVVPKGDTSLVLLLGTIPGPVGTPYEGGVFQIDITLP 60

Query: 60  DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
           DGYPFEPPKM F TKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAP PD
Sbjct: 61  DGYPFEPPKMRFTTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPD 120

Query: 120 DPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEI 179
           DPQDAVVAQQYLKD+QTF++TARYWTESFAK SS G+E+KVQKLVEMGFPE+QVRS LE 
Sbjct: 121 DPQDAVVAQQYLKDYQTFVNTARYWTESFAKVSSRGIEDKVQKLVEMGFPEAQVRSILES 180

Query: 180 VGGDENMALEKLL 192
           VGGDEN+ALE+LL
Sbjct: 181 VGGDENLALERLL 193

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
GENEDB_PFALCIPARUM|PF13_0301	202	PF13_0301 "ubiquitin-conjugati	0.969	0.930	0.515	1.1e-48
UNIPROTKB|Q8IDD9	202	PF13_0301 "Ubiquitin conjugati	0.969	0.930	0.515	1.1e-48
WB|WBGene00006715	199	ubc-20 [Caenorhabditis elegans	0.989	0.964	0.484	4.8e-46
ZFIN|ZDB-GENE-980605-9	200	ube2kb "ubiquitin-conjugating	0.994	0.965	0.507	7.9e-46
UNIPROTKB|P61085	200	UBE2K "Ubiquitin-conjugating e	0.994	0.965	0.502	2.1e-45
UNIPROTKB|E2R6W9	200	UBE2K "Uncharacterized protein	0.994	0.965	0.502	2.1e-45
UNIPROTKB|P61086	200	UBE2K "Ubiquitin-conjugating e	0.994	0.965	0.502	2.1e-45
UNIPROTKB|Q06AB2	200	UBE2K "Uncharacterized protein	0.994	0.965	0.502	2.1e-45
MGI|MGI:1858216	200	Ube2k "ubiquitin-conjugating e	0.994	0.965	0.502	2.1e-45
ZFIN|ZDB-GENE-050320-48	200	ube2ka "ubiquitin-conjugating	0.994	0.965	0.502	9.1e-45

GENEDB_PFALCIPARUM|PF13_0301 PF13_0301 "ubiquitin-conjugating enzyme, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 98/190 (51%), Positives = 129/190 (67%)

Query:     6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
             R+QKEL++  K+     I       N+    G I GP GTPYEGG F LDIT+P+ YP+ 
Sbjct:    13 RLQKELKDIEKE-NVDEIDAHMKDTNIFEWVGFIKGPSGTPYEGGHFILDITIPNDYPYN 71

Query:    66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
             PPK+ F TK+WHPNISSQ+GAICLD+LK++WSPALT++TALLS+QALLS P PDDPQDA 
Sbjct:    72 PPKIKFNTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAE 131

Query:   126 VAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKV-QKLVEMGFPESQVRSTLEIVGGDE 184
             VA+ Y +++  +L TA  WT++FA    L   E + +K+ EMGF E Q +  L     +E
Sbjct:   132 VAKMYKENYSLYLKTASVWTKTFATVPKLEPREDIIKKITEMGFSEDQAKKALIKANWNE 191

Query:   185 NMALEKLLSS 194
              +AL  LL +
Sbjct:   192 TLALNTLLEN 201

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

UNIPROTKB|Q8IDD9 PF13_0301 "Ubiquitin conjugating enzyme, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 98/190 (51%), Positives = 129/190 (67%)

Query:     6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
             R+QKEL++  K+     I       N+    G I GP GTPYEGG F LDIT+P+ YP+ 
Sbjct:    13 RLQKELKDIEKE-NVDEIDAHMKDTNIFEWVGFIKGPSGTPYEGGHFILDITIPNDYPYN 71

Query:    66 PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
             PPK+ F TK+WHPNISSQ+GAICLD+LK++WSPALT++TALLS+QALLS P PDDPQDA 
Sbjct:    72 PPKIKFNTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAE 131

Query:   126 VAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKV-QKLVEMGFPESQVRSTLEIVGGDE 184
             VA+ Y +++  +L TA  WT++FA    L   E + +K+ EMGF E Q +  L     +E
Sbjct:   132 VAKMYKENYSLYLKTASVWTKTFATVPKLEPREDIIKKITEMGFSEDQAKKALIKANWNE 191

Query:   185 NMALEKLLSS 194
              +AL  LL +
Sbjct:   192 TLALNTLLEN 201

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

WB|WBGene00006715 ubc-20 [Caenorhabditis elegans (taxid:6239)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 95/196 (48%), Positives = 127/196 (64%)

Query:     2 IDFSRVQKELQEC--SKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
             I F+R+Q+E +E   + +I  +GI +  +++NL  + G I GP  TPY GG F LDI +P
Sbjct:     4 IAFNRLQRECKEVVTNSEISETGIMIEILNENLTEIKGHIRGPPDTPYAGGMFDLDIKIP 63

Query:    60 DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
             D YPF PP + F TK+WHPN+SSQ+G ICLDILKDQW+ +LTL+T LLS+QAL+  P P 
Sbjct:    64 DQYPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQWAASLTLRTVLLSIQALMCTPEPK 123

Query:   120 DPQDAVVAQQYLKDHQTFLSTARYWTESFAK--TSSLGVEEKVQKLVEMGFPESQVRSTL 177
             DPQDAVVA+QY++    F +TA YWT  FAK    + G +  V KL +MG  E +  S L
Sbjct:   124 DPQDAVVAKQYMEKPAVFKATAEYWTTKFAKGAVKNAGYQALVDKLKDMGVREEEAVSVL 183

Query:   178 EIVGGDENMALEKLLS 193
                  D N +   + S
Sbjct:   184 SCNNWDINRSTVYIFS 199

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

ZFIN|ZDB-GENE-980605-9 ube2kb "ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast)" [Danio rerio (taxid:7955)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 100/197 (50%), Positives = 128/197 (64%)

Query:     2 IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
             I   R+++E +E  K  E S   IKV  V +N   L G I GP  TPYEGG ++L+I +P
Sbjct:     4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELKGEIAGPPDTPYEGGRYQLEIKIP 63

Query:    60 DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
             + YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PD
Sbjct:    64 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 123

Query:   120 DPQDAVVAQQYLKDHQTFLSTARYWTESFA--KTSSLGVEEKVQKLVEMGFPESQVRSTL 177
             DPQDAVVA QY ++ + F  TAR W+  +A    SS     K+ KL  MGF ++ V   L
Sbjct:   124 DPQDAVVANQYKQNPEMFKQTARLWSHVYAGAPVSSPEYTRKIDKLCAMGFDKNAVIVAL 183

Query:   178 EIVGGDENMALEKLLSS 194
                  D   A E LLS+
Sbjct:   184 SSKSWDVETATELLLSN 200

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|P61085 UBE2K "Ubiquitin-conjugating enzyme E2 K" [Bos taurus (taxid:9913)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 99/197 (50%), Positives = 127/197 (64%)

Query:     2 IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
             I   R+++E +E  K  E S   IKV  V +N   L G I GP  TPYEGG ++L+I +P
Sbjct:     4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 63

Query:    60 DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
             + YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PD
Sbjct:    64 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 123

Query:   120 DPQDAVVAQQYLKDHQTFLSTARYWTESFA--KTSSLGVEEKVQKLVEMGFPESQVRSTL 177
             DPQDAVVA QY ++ + F  TAR W   +A    SS    +K++ L  MGF  + V   L
Sbjct:   124 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVAL 183

Query:   178 EIVGGDENMALEKLLSS 194
                  D   A E LLS+
Sbjct:   184 SSKSWDVETATELLLSN 200

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2R6W9 UBE2K "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 99/197 (50%), Positives = 127/197 (64%)

Query:     2 IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
             I   R+++E +E  K  E S   IKV  V +N   L G I GP  TPYEGG ++L+I +P
Sbjct:     4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 63

Query:    60 DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
             + YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PD
Sbjct:    64 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 123

Query:   120 DPQDAVVAQQYLKDHQTFLSTARYWTESFA--KTSSLGVEEKVQKLVEMGFPESQVRSTL 177
             DPQDAVVA QY ++ + F  TAR W   +A    SS    +K++ L  MGF  + V   L
Sbjct:   124 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVAL 183

Query:   178 EIVGGDENMALEKLLSS 194
                  D   A E LLS+
Sbjct:   184 SSKSWDVETATELLLSN 200

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|P61086 UBE2K "Ubiquitin-conjugating enzyme E2 K" [Homo sapiens (taxid:9606)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 99/197 (50%), Positives = 127/197 (64%)

Query:     2 IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
             I   R+++E +E  K  E S   IKV  V +N   L G I GP  TPYEGG ++L+I +P
Sbjct:     4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 63

Query:    60 DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
             + YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PD
Sbjct:    64 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 123

Query:   120 DPQDAVVAQQYLKDHQTFLSTARYWTESFA--KTSSLGVEEKVQKLVEMGFPESQVRSTL 177
             DPQDAVVA QY ++ + F  TAR W   +A    SS    +K++ L  MGF  + V   L
Sbjct:   124 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVAL 183

Query:   178 EIVGGDENMALEKLLSS 194
                  D   A E LLS+
Sbjct:   184 SSKSWDVETATELLLSN 200

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IDA

GO:0070936 "protein K48-linked ubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

UNIPROTKB|Q06AB2 UBE2K "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 99/197 (50%), Positives = 127/197 (64%)

Query:     2 IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
             I   R+++E +E  K  E S   IKV  V +N   L G I GP  TPYEGG ++L+I +P
Sbjct:     4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 63

Query:    60 DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
             + YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PD
Sbjct:    64 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 123

Query:   120 DPQDAVVAQQYLKDHQTFLSTARYWTESFA--KTSSLGVEEKVQKLVEMGFPESQVRSTL 177
             DPQDAVVA QY ++ + F  TAR W   +A    SS    +K++ L  MGF  + V   L
Sbjct:   124 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVAL 183

Query:   178 EIVGGDENMALEKLLSS 194
                  D   A E LLS+
Sbjct:   184 SSKSWDVETATELLLSN 200

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

MGI|MGI:1858216 Ube2k "ubiquitin-conjugating enzyme E2K" [Mus musculus (taxid:10090)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 99/197 (50%), Positives = 127/197 (64%)

Query:     2 IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
             I   R+++E +E  K  E S   IKV  V +N   L G I GP  TPYEGG ++L+I +P
Sbjct:     4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 63

Query:    60 DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
             + YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PD
Sbjct:    64 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 123

Query:   120 DPQDAVVAQQYLKDHQTFLSTARYWTESFA--KTSSLGVEEKVQKLVEMGFPESQVRSTL 177
             DPQDAVVA QY ++ + F  TAR W   +A    SS    +K++ L  MGF  + V   L
Sbjct:   124 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVAL 183

Query:   178 EIVGGDENMALEKLLSS 194
                  D   A E LLS+
Sbjct:   184 SSKSWDVETATELLLSN 200

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0032434 "regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;IMP

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=ISO

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO

ZFIN|ZDB-GENE-050320-48 ube2ka "ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast)" [Danio rerio (taxid:7955)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 99/197 (50%), Positives = 127/197 (64%)

Query:     2 IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
             I   R+++E +E  K  E S   IKV  V +N   L G I GP  TPYEGG ++L+I +P
Sbjct:     4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 63

Query:    60 DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
             + YPF PPK+ F+TK+WHPNISS +GAICLDILK QW+ A+TL+T LLS+QALL+A  PD
Sbjct:    64 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKGQWAAAMTLRTVLLSLQALLAAAEPD 123

Query:   120 DPQDAVVAQQYLKDHQTFLSTARYWTE--SFAKTSSLGVEEKVQKLVEMGFPESQVRSTL 177
             DPQDAVVA QY ++ + F  TAR W+   + A  SS     K+ KL  MGF ++ V   L
Sbjct:   124 DPQDAVVANQYKQNPEMFKQTARLWSHVCAGAPVSSPEYTRKIDKLCAMGFDKNAVIVAL 183

Query:   178 EIVGGDENMALEKLLSS 194
                  D   A E LLS+
Sbjct:   184 SSKSWDVEAATELLLSN 200

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61087	UBE2K_MOUSE	6, ., 3, ., 2, ., 1, 9	0.5025	0.9948	0.965	yes	no
P61086	UBE2K_HUMAN	6, ., 3, ., 2, ., 1, 9	0.5025	0.9948	0.965	yes	no
P61085	UBE2K_BOVIN	6, ., 3, ., 2, ., 1, 9	0.5025	0.9948	0.965	yes	no
P21734	UBC1_YEAST	6, ., 3, ., 2, ., 1, 9	0.5506	0.8041	0.7255	yes	no
P52486	UBCD4_DROME	6, ., 3, ., 2, ., 1, 9	0.4947	0.9381	0.9145	yes	no
Q9FI61	UBC27_ARATH	6, ., 3, ., 2, ., 1, 9	0.7628	0.9896	1.0	yes	no
O74810	UBC1_SCHPO	6, ., 3, ., 2, ., 1, 9	0.5113	0.8917	0.7972	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	0.979
3rd Layer	6.3.2	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	4e-66
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	5e-65
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	2e-60
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	8e-56
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	9e-55
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	6e-43
cd00194	38	cd00194, UBA, Ubiquitin Associated domain	9e-10
smart00165	37	smart00165, UBA, Ubiquitin associated domain	2e-08
pfam00627	37	pfam00627, UBA, UBA/TS-N domain	2e-08

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  198 bits (507), Expect = 4e-66
 Identities = 74/142 (52%), Positives = 96/142 (67%), Gaps = 3/142 (2%)

Query: 5   SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
            R+QKEL++  KD   SGI   PV +NL+   G I GP  TPYEGG F+LDI  P+ YPF
Sbjct: 2   KRLQKELKDLKKD-PPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPF 60

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILKDQ-WSPALTLKTALLSVQALLSAPAPDDPQD 123
           +PPK+ FVTK++HPN+   +G ICL ILK   WSPA TL+T LLS+Q+LL+ P P DP +
Sbjct: 61  KPPKVRFVTKIYHPNVDE-NGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLN 119

Query: 124 AVVAQQYLKDHQTFLSTARYWT 145
           A  A+ Y ++ + F   AR WT
Sbjct: 120 AEAAKLYKENREEFKKKAREWT 141

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  196 bits (500), Expect = 5e-65
 Identities = 75/141 (53%), Positives = 95/141 (67%), Gaps = 3/141 (2%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+QKEL+E  KD    GI   PV DNL      I GP GTPYEGG F+LDI  P+ YPF+
Sbjct: 1   RLQKELKELLKDPP-PGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFK 59

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQ-WSPALTLKTALLSVQALLSAPAPDDPQDA 124
           PPK+ F TK++HPN+   SG ICLDILKD+ WSPALT++  LLS+Q+LLS P P+DP +A
Sbjct: 60  PPKVKFTTKIYHPNVDP-SGEICLDILKDENWSPALTIEQVLLSIQSLLSEPNPEDPLNA 118

Query: 125 VVAQQYLKDHQTFLSTARYWT 145
             A+ Y K+ + F    R + 
Sbjct: 119 EAAKLYRKNREEFEKKVREYV 139

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  184 bits (470), Expect = 2e-60
 Identities = 80/147 (54%), Positives = 103/147 (70%), Gaps = 4/147 (2%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           R+ KEL+E  KD    G    PV D NL+  TG I GP GTPYEGG F+L I  P+ YPF
Sbjct: 1   RLLKELKELRKD-PPPGFTAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPF 59

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           +PPK+ F+TK++HPN+ S SG ICLDILK ++WSPALTL+T LLS+Q+LLS P PD P +
Sbjct: 60  KPPKVKFITKIYHPNVDS-SGEICLDILKQEKWSPALTLETVLLSLQSLLSEPNPDSPLN 118

Query: 124 AVVAQQYLKDHQTFLSTARYWTESFAK 150
           A  A+ Y K+ + F   AR WT+ +A+
Sbjct: 119 ADAAELYKKNREEFKKKAREWTKKYAE 145

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  173 bits (440), Expect = 8e-56
 Identities = 69/147 (46%), Positives = 93/147 (63%), Gaps = 3/147 (2%)

Query: 5   SRVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
            R+ KEL++  KD    GI   PV D NL H    I GP  TPYEGG F+L +  P+ YP
Sbjct: 8   KRLLKELKKLQKDPPP-GISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYP 66

Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F TK++HPN+   SG +CLDILKD+WSP  TL+T LLS+Q+LL +P PD P +
Sbjct: 67  FKPPKVRFTTKIFHPNVDP-SGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLN 125

Query: 124 AVVAQQYLKDHQTFLSTARYWTESFAK 150
              A  Y +D + +    R W + +A+
Sbjct: 126 TEAATLYREDKEEYEKKVREWVKKYAE 152

Length = 153

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score =  170 bits (433), Expect = 9e-55
 Identities = 74/149 (49%), Positives = 98/149 (65%), Gaps = 2/149 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R++KE Q  + D    GIK  P   N  H   ++ GP GTPYEGG ++L++ LP+ YP E
Sbjct: 6   RIEKETQNLAND-PPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPME 64

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F+TK++HPNI  + G ICLDILKD+WSPAL ++T LLS+QALLSAP PDDP D  
Sbjct: 65  PPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTS 123

Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTSSL 154
           VA  +  +       AR W + +AK + L
Sbjct: 124 VADHFKNNRADAEKVAREWNQKYAKHNKL 152

Length = 152

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score =  140 bits (354), Expect = 6e-43
 Identities = 68/144 (47%), Positives = 94/144 (65%), Gaps = 2/144 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+QKE ++  KD   S     P  +NL   T  I GP  +PY GG F L I  P  YPF+
Sbjct: 5   RIQKEHKDLLKD-PPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFK 63

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F TK++HPNI+S +G+ICLDIL+DQWSPALT+   LLS+ +LL+ P PDDP    
Sbjct: 64  PPKVQFTTKIYHPNINS-NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPE 122

Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A+ + ++   + +TAR WT+ +A
Sbjct: 123 IARVFKENRSRYEATAREWTQRYA 146

Length = 147

>gnl|CDD|238116 cd00194, UBA, Ubiquitin Associated domain

 Score = 51.7 bits (125), Expect = 9e-10
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193
           EEK+++L+EMGF   + R  L     +   A+E LL 
Sbjct: 2   EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLLE 38

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins. Length = 38

>gnl|CDD|197551 smart00165, UBA, Ubiquitin associated domain

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLL 192
           EEK+ +L+EMGF   +    L    G+   A E LL
Sbjct: 2   EEKIDQLLEMGFSREEALKALRAANGNVERAAEYLL 37

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin. Length = 37

>gnl|CDD|201355 pfam00627, UBA, UBA/TS-N domain

 Score = 47.8 bits (115), Expect = 2e-08
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKL 191
           EE +++L EMGF   + +  L    G+   A+E L
Sbjct: 3   EELIKQLREMGFSREEAKKALRATNGNVERAVEYL 37

This small domain is composed of three alpha helices. This family includes the previously defined UBA and TS-N domains. The UBA-domain (ubiquitin associated domain) is a novel sequence motif found in several proteins having connections to ubiquitin and the ubiquitination pathway. The structure of the UBA domain consists of a compact three helix bundle. This domain is found at the N terminus of EF-TS hence the name TS-N. The structure of EF-TS is known and this domain is implicated in its interaction with EF-TU. The domain has been found in non EF-TS proteins such as alpha-NAC and MJ0280. Length = 37

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	100.0
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.97
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	99.95
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.92
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	99.86
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.72
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.59
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.58
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	98.73
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.62
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	98.26
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	98.25
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	98.2
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	98.08
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	97.62
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	97.28
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	97.13
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	97.04
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	96.75
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	96.02
KOG3357	167	consensus Uncharacterized conserved protein [Funct	95.32
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	95.25
smart00591	107	RWD domain in RING finger and WD repeat containing	94.97
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	94.78
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	94.58
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	93.74
PF09288	55	UBA_3: Fungal ubiquitin-associated domain ; InterP	92.15
KOG0944	763	consensus Ubiquitin-specific protease UBP14 [Postt	89.81
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	89.23
smart00546	43	CUE Domain that may be involved in binding ubiquit	88.67
PRK06369	115	nac nascent polypeptide-associated complex protein	88.32
PF09765	291	WD-3: WD-repeat region; InterPro: IPR019162 This e	86.56
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	85.5
PF06972	60	DUF1296: Protein of unknown function (DUF1296); In	85.42
KOG4018	215	consensus Uncharacterized conserved protein, conta	85.03
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	83.37
PF11547	53	E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro	81.11

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-56  Score=339.45  Aligned_cols=194  Identities=53%  Similarity=0.880  Sum_probs=185.0

Q ss_pred             Cc-hHHHHHHHHHHHHhcCC--CCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceec
Q 029412            1 MI-DFSRVQKELQECSKDIE--ASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWH   77 (194)
Q Consensus         1 m~-~~~RL~~E~~~l~~~~~--~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   77 (194)
                      |+ +.+||++|++++.++..  ..||.+...++|+.+..+.|.||++|||+||+|.++|++|++|||+||+|+|.|+|||
T Consensus         1 m~~~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH   80 (200)
T KOG0418|consen    1 MSNAFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH   80 (200)
T ss_pred             CccHHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence            56 69999999999999842  5799999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCC-Cc-
Q 029412           78 PNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSS-LG-  155 (194)
Q Consensus        78 pnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~-~~-  155 (194)
                      |||++.+|.||+|+|++.|.+++|+.++|++||++|..|++.+|.+..+|++|.+|++.|.++||.||..||++.. .. 
T Consensus        81 PnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~~~~~~  160 (200)
T KOG0418|consen   81 PNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGRLPDDP  160 (200)
T ss_pred             CCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999943 22 


Q ss_pred             -hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          156 -VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       156 -~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                       +..+++.|++|||++..++.+|+..+|+..+|+|+|++|
T Consensus       161 ~~~~~v~~l~~mGf~~~~~i~~L~~~~w~~~~a~~~~~s~  200 (200)
T KOG0418|consen  161 WDKKKVDSLIEMGFSELEAILVLSGSDWNLADATEQLLSG  200 (200)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHhhccccchhhhhHhhccC
Confidence             368999999999999999999999999999999999987

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-55  Score=325.23  Aligned_cols=147  Identities=51%  Similarity=0.920  Sum_probs=143.1

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS   82 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   82 (194)
                      +.+||.+|+++|+++ +++|+++.++++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+ 
T Consensus         2 a~~RI~kE~~~l~~d-p~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-   79 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRD-PPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-   79 (148)
T ss_pred             cHHHHHHHHHHHhcC-CCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-
Confidence            567999999999999 569999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412           83 QSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT  151 (194)
Q Consensus        83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~  151 (194)
                      .+|.||+|+|++.|+|+++|.+||++|++||.+||+++|++.++|.+|+.|+.+|+++||+||++||+.
T Consensus        80 ~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~  148 (148)
T KOG0417|consen   80 SNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG  148 (148)
T ss_pred             ccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence            699999999999999999999999999999999999999999999999999999999999999999974

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-52  Score=317.45  Aligned_cols=146  Identities=47%  Similarity=0.926  Sum_probs=142.4

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      +.+||++|++.|+++ ++.++++.|.++ |+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+|||||||
T Consensus         6 a~~RL~kE~~~l~~~-~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~   84 (153)
T COG5078           6 ALKRLLKELKKLQKD-PPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD   84 (153)
T ss_pred             HHHHHHHHHHHHhcC-CCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC
Confidence            789999999999999 469999999887 999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                       .+|+||+++|++.|+|++++++||++|+++|.+||+++|+|.|||++|++|+++|.++||+|+++||.
T Consensus        85 -~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~  152 (153)
T COG5078          85 -PSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE  152 (153)
T ss_pred             -CCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence             79999999999999999999999999999999999999999999999999999999999999999985

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=5.7e-51  Score=311.53  Aligned_cols=150  Identities=49%  Similarity=0.901  Sum_probs=145.5

Q ss_pred             CchHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            1 MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         1 m~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      |++.|||++|+++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus         1 ~~~~kRl~~E~~~l~~~-~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV   79 (152)
T PTZ00390          1 MSISKRIEKETQNLAND-PPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI   79 (152)
T ss_pred             CcHHHHHHHHHHHHHhC-CCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence            88999999999999998 56899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412           81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS  152 (194)
Q Consensus        81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~  152 (194)
                      + .+|.||+++|+++|+|++||++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|+++||...
T Consensus        80 ~-~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~~  150 (152)
T PTZ00390         80 D-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKHN  150 (152)
T ss_pred             C-CCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhccc
Confidence            9 5899999999999999999999999999999999999999999999999999999999999999999853

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=2.1e-49  Score=301.57  Aligned_cols=146  Identities=46%  Similarity=0.860  Sum_probs=141.4

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS   82 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   82 (194)
                      +.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+ 
T Consensus         2 a~~Rl~kE~~~l~~~-~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~-   79 (147)
T PLN00172          2 ATKRIQKEHKDLLKD-PPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN-   79 (147)
T ss_pred             hHHHHHHHHHHHHhC-CCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceEC-
Confidence            479999999999998 568999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           83 QSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                      .+|.||+++|.++|+|++|+++||.+|+++|.+|++++|+|.+||++|.+|+++|.++|++|+++||.
T Consensus        80 ~~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~  147 (147)
T PLN00172         80 SNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT  147 (147)
T ss_pred             CCCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence            59999999999999999999999999999999999999999999999999999999999999999983

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-48  Score=279.86  Aligned_cols=144  Identities=33%  Similarity=0.745  Sum_probs=139.4

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS   82 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   82 (194)
                      |.+||+++|+.|+++ ++.||+..|.++|++.|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+.+||||||+
T Consensus         5 ArrrLmrDfkrlqed-pp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya   83 (152)
T KOG0419|consen    5 ARRRLMRDFKRLQED-PPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYA   83 (152)
T ss_pred             HHHHHHHHHHHhhcC-CCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCC
Confidence            789999999999999 6799999999999999999999999999999999999999999999999999999999999996


Q ss_pred             CCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHH
Q 029412           83 QSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESF  148 (194)
Q Consensus        83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~  148 (194)
                       +|.+|+|+|...|+|.|++.+||.+||+||.+|++++|+|.+||++|.+|+.+|.++++..+.+.
T Consensus        84 -~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs  148 (152)
T KOG0419|consen   84 -DGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS  148 (152)
T ss_pred             -CCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence             79999999999999999999999999999999999999999999999999999999999876653

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.5e-44  Score=264.21  Aligned_cols=144  Identities=29%  Similarity=0.645  Sum_probs=135.8

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecC-CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVS-DNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      +..-|+++|++|++. +..|+.+...+ .|+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|.+||||||
T Consensus         6 a~~ll~~qlk~L~~~-pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy   84 (171)
T KOG0425|consen    6 ASLLLLKQLKELQEE-PVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY   84 (171)
T ss_pred             hHHHHHHHHHHHhcC-CCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC
Confidence            346789999999999 67999999775 4999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccccc-------------CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHH
Q 029412           82 SQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESF  148 (194)
Q Consensus        82 ~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~  148 (194)
                       ++|++|+++|.             +.|.|..|+++||++|.+||.+||.++|+|.+||+.|++|+++|.++++.++.+.
T Consensus        85 -~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s  163 (171)
T KOG0425|consen   85 -EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS  163 (171)
T ss_pred             -CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence             69999999993             4799999999999999999999999999999999999999999999999998864

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-43  Score=258.15  Aligned_cols=148  Identities=36%  Similarity=0.707  Sum_probs=140.4

Q ss_pred             CchHHHHHHHHHHHHhcCCCCCeEEEec-----CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccce
Q 029412            1 MIDFSRVQKELQECSKDIEASGIKVTPV-----SDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKV   75 (194)
Q Consensus         1 m~~~~RL~~E~~~l~~~~~~~~i~v~~~-----~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   75 (194)
                      |.++.||+.|-+.+.++ .+.|+++.|.     ..|++.|++.|.|+++|+||||.|.+.|.||++||++||+++|.+++
T Consensus         3 ~~~~~rl~eErk~wrk~-hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl   81 (158)
T KOG0424|consen    3 GIALNRLAEERKKWRKD-HPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPL   81 (158)
T ss_pred             chHHHHHHHHHHHHhhc-CCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCC
Confidence            45789999999999999 4699999875     24799999999999999999999999999999999999999999999


Q ss_pred             ecccccCCCcccccccccCC--CCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           76 WHPNISSQSGAICLDILKDQ--WSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        76 ~Hpnv~~~~G~icl~~l~~~--W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                      ||||||+ +|.|||++|.+.  |+|+.||.+||..||.||.+||+.+|+|.||...|.+|+.+|+++||..+++||.
T Consensus        82 ~HPNVyp-sgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~  157 (158)
T KOG0424|consen   82 FHPNVYP-SGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK  157 (158)
T ss_pred             cCCCcCC-CCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence            9999997 899999999754  9999999999999999999999999999999999999999999999999999986

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=4.1e-43  Score=265.17  Aligned_cols=138  Identities=49%  Similarity=0.939  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEecCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccCCC
Q 029412            6 RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQS   84 (194)
Q Consensus         6 RL~~E~~~l~~~~~~~~i~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~   84 (194)
                      ||++|+++++++ ++.|+.+.+.++ |+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+ .+
T Consensus         1 Rl~~E~~~l~~~-~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~   78 (140)
T PF00179_consen    1 RLQKELKELQKN-PPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-EN   78 (140)
T ss_dssp             HHHHHHHHHHHS-HTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TT
T ss_pred             CHHHHHHHHhhC-CCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-cc
Confidence            999999999998 569999998876 999999999999999999999999999999999999999999999999999 79


Q ss_pred             cccccccccC-CCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHH
Q 029412           85 GAICLDILKD-QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWT  145 (194)
Q Consensus        85 G~icl~~l~~-~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~  145 (194)
                      |.||+++|.. .|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus        79 G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~  140 (140)
T PF00179_consen   79 GRICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA  140 (140)
T ss_dssp             SBBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred             ccchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence            9999999985 599999999999999999999999999999999999999999999999984

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=3.2e-42  Score=260.64  Aligned_cols=139  Identities=53%  Similarity=1.002  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccCCC
Q 029412            5 SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQS   84 (194)
Q Consensus         5 ~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~   84 (194)
                      |||++|+++++++ +..|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||.|+|.|++|||||+ .+
T Consensus         2 ~Rl~~E~~~l~~~-~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~   79 (141)
T cd00195           2 KRLQKELKDLKKD-PPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-EN   79 (141)
T ss_pred             chHHHHHHHHHhC-CCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CC
Confidence            7999999999999 458999999999999999999999999999999999999999999999999999999999999 69


Q ss_pred             cccccccccCC-CCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHH
Q 029412           85 GAICLDILKDQ-WSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWT  145 (194)
Q Consensus        85 G~icl~~l~~~-W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~  145 (194)
                      |.||++++... |+|++++.+||.+|+++|.+|+.++|+|.+||++|++|++.|.++|+.|+
T Consensus        80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~  141 (141)
T cd00195          80 GKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT  141 (141)
T ss_pred             CCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence            99999999876 99999999999999999999999999999999999999999999999874

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=100.00  E-value=2.4e-41  Score=257.02  Aligned_cols=143  Identities=55%  Similarity=0.989  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEecCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccCC
Q 029412            5 SRVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQ   83 (194)
Q Consensus         5 ~RL~~E~~~l~~~~~~~~i~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~   83 (194)
                      +||++|+++++++. +.|+.+.+.++ |++.|+++|.||++|||+||.|++.|.||++||++||+|+|.+++|||||+. 
T Consensus         1 ~Rl~~E~~~~~~~~-~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~-   78 (145)
T smart00212        1 KRLLKELKELLKDP-PPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDS-   78 (145)
T ss_pred             ChHHHHHHHHHhCC-CCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECC-
Confidence            59999999999994 58999988765 9999999999999999999999999999999999999999999999999995 


Q ss_pred             Cccccccccc-CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 029412           84 SGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA  149 (194)
Q Consensus        84 ~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a  149 (194)
                      +|.||++++. ++|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++|++.|.++|+.|+++|+
T Consensus        79 ~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~  145 (145)
T smart00212       79 SGEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA  145 (145)
T ss_pred             CCCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            9999999998 89999999999999999999999999999999999999999999999999999874

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-41  Score=244.61  Aligned_cols=145  Identities=30%  Similarity=0.636  Sum_probs=137.5

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEec-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPV-SDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      +|+|||++||++|..+ ++.||.+.|. ++|+++|.+.|.||++|+|+||+|..++.||.+||.+||+++|...+|||||
T Consensus         4 ~AlkRLm~EykqLt~~-~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNi   82 (165)
T KOG0426|consen    4 TALKRLMAEYKQLTLN-PPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNI   82 (165)
T ss_pred             hHHHHHHHHHHHHccC-CCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcc
Confidence            4899999999999999 5699998886 6789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccccccc-------------CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Q 029412           81 SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTES  147 (194)
Q Consensus        81 ~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~  147 (194)
                      ++ +|+||+++|.             +.|+|..+++.||+++.+||.+||.++++|.+|+.++++|+++|.+.|+..+.+
T Consensus        83 y~-dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrK  161 (165)
T KOG0426|consen   83 YP-DGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRK  161 (165)
T ss_pred             cC-CCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHH
Confidence            95 9999999983             579999999999999999999999999999999999999999999999998876


Q ss_pred             H
Q 029412          148 F  148 (194)
Q Consensus       148 ~  148 (194)
                      .
T Consensus       162 t  162 (165)
T KOG0426|consen  162 T  162 (165)
T ss_pred             h
Confidence            4

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-41  Score=247.85  Aligned_cols=142  Identities=38%  Similarity=0.705  Sum_probs=134.9

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS   82 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   82 (194)
                      ..|||++|+..|+-. ..+||++.|.++|++.|.++|.||++|+|+|-.|++.+.||.+||+.||.|+|+|+.|||||| 
T Consensus        30 V~KRLq~ELm~Lmms-~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD-  107 (175)
T KOG0421|consen   30 VTKRLQSELMGLMMS-NTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD-  107 (175)
T ss_pred             HHHHHHHHHHHHHhc-CCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc-
Confidence            469999999999988 458999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Q 029412           83 QSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTES  147 (194)
Q Consensus        83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~  147 (194)
                      ..|.||+|+|++.|+..|++++||++||+||-+||.++|+|..||.++. |.++|.+.+...-++
T Consensus       108 ~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~  171 (175)
T KOG0421|consen  108 LSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE  171 (175)
T ss_pred             ccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence            5899999999999999999999999999999999999999999999998 999999988865443

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-40  Score=241.06  Aligned_cols=150  Identities=34%  Similarity=0.710  Sum_probs=139.0

Q ss_pred             CchHHHHHHHHHHHHhcCCCCCe-EEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccc
Q 029412            1 MIDFSRVQKELQECSKDIEASGI-KVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPN   79 (194)
Q Consensus         1 m~~~~RL~~E~~~l~~~~~~~~i-~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   79 (194)
                      |++.+||++|+.+|+++.. ..+ .+...++|++.|.+.|. |.+-||..|.|+++|.||.+|||+||+|.|.|.|||||
T Consensus         1 m~a~~Rl~kEL~dl~~~~~-~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpN   78 (153)
T KOG0422|consen    1 MAAPRRLRKELADLQKNKM-KFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPN   78 (153)
T ss_pred             CchhHHHHHHHHHHHhccH-HHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCC
Confidence            8899999999999999853 333 23456789999999999 99999999999999999999999999999999999999


Q ss_pred             ccCCCccccccccc-CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCC
Q 029412           80 ISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSS  153 (194)
Q Consensus        80 v~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~  153 (194)
                      || +.|.||+.++. ++|.|+.++.+||+.|..++.+|+++.|++.|+|..|.+|+..|.++|.+||++|+....
T Consensus        79 VD-e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~rp  152 (153)
T KOG0422|consen   79 VD-EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEKRP  152 (153)
T ss_pred             CC-CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCcCC
Confidence            99 57999999985 899999999999999999999999999999999999999999999999999999997653

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-37  Score=233.75  Aligned_cols=147  Identities=31%  Similarity=0.680  Sum_probs=138.5

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS   82 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   82 (194)
                      ..|||..|...|...    +..|...++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|.++||||||+-
T Consensus         4 ~~rRid~Dv~KL~~s----~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe   79 (189)
T KOG0416|consen    4 GKRRIDTDVMKLLMS----DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE   79 (189)
T ss_pred             cccchhhHHHHHHhc----CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh
Confidence            468999999888866    5778888899999999999999999999999999999999999999999999999999998


Q ss_pred             CCcccccccccCCCCcccCHHHHHHHH-HHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCC
Q 029412           83 QSGAICLDILKDQWSPALTLKTALLSV-QALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSS  153 (194)
Q Consensus        83 ~~G~icl~~l~~~W~p~~~i~~il~~i-~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~  153 (194)
                      .+|.|||+.+...|+|.+.+..|+..+ -.||..||+.+|+|-+||.+|.++++.|.+++|+++++||++..
T Consensus        80 ~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~~  151 (189)
T KOG0416|consen   80 ASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPEA  151 (189)
T ss_pred             ccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChhh
Confidence            899999999999999999999999776 67899999999999999999999999999999999999999874

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.8e-36  Score=227.36  Aligned_cols=147  Identities=30%  Similarity=0.595  Sum_probs=126.5

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCce--EEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLV--HLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      +.-||++|+.++..- +...+++.-..+++.  ..+++|. |+++.|+||.|.|.+.+|+.||+.||+|+|+|+||||||
T Consensus        29 a~lrl~~di~elnLp-~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNI  106 (184)
T KOG0420|consen   29 ALLRLKKDILELNLP-PTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNI  106 (184)
T ss_pred             HHHHHHhhhhhccCC-CccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCc
Confidence            456777777776654 222233322234444  5999998 999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412           81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS  152 (194)
Q Consensus        81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~  152 (194)
                      | .+|.|||++|+++|+|..++.+|+.+|+.||.+|+++||+|.+||+.+++|++.|..+||.....|+-+.
T Consensus       107 d-~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v~~  177 (184)
T KOG0420|consen  107 D-LDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCVGQ  177 (184)
T ss_pred             C-CcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCccCc
Confidence            9 6999999999999999999999999999999999999999999999999999999999998777666543

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.7e-36  Score=225.28  Aligned_cols=146  Identities=34%  Similarity=0.724  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccCC
Q 029412            4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQ   83 (194)
Q Consensus         4 ~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~   83 (194)
                      ++.+.+|++.|... |+.||+|.+.++|+....+.|.||.||||++|.|++.+.+..+||.+||+-.|+|+||||||- .
T Consensus        12 ik~~~kEl~~l~~~-PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa-a   89 (223)
T KOG0423|consen   12 IKQLAKELKSLDES-PPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA-A   89 (223)
T ss_pred             HHHHHHHHHhcccC-CCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc-c
Confidence            68899999999999 679999999999999999999999999999999999999999999999999999999999997 5


Q ss_pred             CcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412           84 SGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT  151 (194)
Q Consensus        84 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~  151 (194)
                      +|.||.+.|+.+|+|+..|..||..|+.||..|++++.+|.+|++++.++.++|.+.||-+|.-||++
T Consensus        90 NGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p  157 (223)
T KOG0423|consen   90 NGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP  157 (223)
T ss_pred             CceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999987

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.8e-30  Score=185.52  Aligned_cols=111  Identities=40%  Similarity=0.733  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccce-eccccc
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKV-WHPNIS   81 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~   81 (194)
                      +.+||+|||.+++.+ ++.|+... ..+|+..|.+.+.|.+||.|+|.+|.+.+.||+.||+..|.|.|..++ .||+|+
T Consensus        16 at~RLqKEl~e~q~~-pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY   93 (161)
T KOG0427|consen   16 ATNRLQKELSEWQNN-PPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY   93 (161)
T ss_pred             HHHHHHHHHHHHhcC-CCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee
Confidence            679999999999999 67999887 678999999999999999999999999999999999999999999775 899999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCC
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAP  116 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p  116 (194)
                       .+|.|||++|.+.|+|++++.+|.++|.+||++-
T Consensus        94 -SNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs  127 (161)
T KOG0427|consen   94 -SNGHICLDILYDSWSPAMSVQSVCLSILSMLSSS  127 (161)
T ss_pred             -cCCeEEEEeecccCCcchhhHHHHHHHHHHHccC
Confidence             5999999999999999999999999999999974

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.1e-28  Score=189.14  Aligned_cols=111  Identities=29%  Similarity=0.628  Sum_probs=100.9

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccc--eeccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTK--VWHPN   79 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~Hpn   79 (194)
                      ++.|||+|||+.|.++ |.++|.+.|.++|+.+||.+|.||++|||+||.|+.+|.||++||++||.|++.||  +|.+ 
T Consensus         5 ~a~kRl~keY~~l~k~-Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFkt-   82 (244)
T KOG0894|consen    5 AAVKRLQKEYRALCKD-PVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKT-   82 (244)
T ss_pred             HHHHHHHHHHHHHHhC-CchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceec-
Confidence            4789999999999999 67999999999999999999999999999999999999999999999999999995  3333 


Q ss_pred             ccCCCcccccccc---cCCCCcccCHHHHHHHHHHhhCCCCC
Q 029412           80 ISSQSGAICLDIL---KDQWSPALTLKTALLSVQALLSAPAP  118 (194)
Q Consensus        80 v~~~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~p~~  118 (194)
                          +-++||++.   ++.|+|++++.+||.+|.++|.+..+
T Consensus        83 ----ntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p  120 (244)
T KOG0894|consen   83 ----NTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP  120 (244)
T ss_pred             ----CceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence                357999887   58999999999999999999987544

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=8.9e-25  Score=171.03  Aligned_cols=143  Identities=23%  Similarity=0.360  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCC--CCCCcccccceecccccC
Q 029412            5 SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF--EPPKMHFVTKVWHPNISS   82 (194)
Q Consensus         5 ~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~Hpnv~~   82 (194)
                      -.|..||..+.+. +.+||+|.|+-.|-+.|.++|+ ...+.|.||+|+|+|.+|++||.  ..|+|.|.+.++||+|.+
T Consensus        22 y~llAEf~lV~~e-kL~gIyviPSyan~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp   99 (258)
T KOG0429|consen   22 YALLAEFVLVCRE-KLDGIYVIPSYANKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICP   99 (258)
T ss_pred             HHHHHHHHHHHhc-cCCceEEcccccccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCC
Confidence            4577888888888 6899999999999999999999 55668999999999999999995  689999999999999999


Q ss_pred             CCcccccccccCCCCccc-CHHHHHHHHHHhhCCCCCCCc-h-hHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 029412           83 QSGAICLDILKDQWSPAL-TLKTALLSVQALLSAPAPDDP-Q-DAVVAQQYLKDHQTFLSTARYWTESFA  149 (194)
Q Consensus        83 ~~G~icl~~l~~~W~p~~-~i~~il~~i~~ll~~p~~~~p-~-n~~a~~~~~~~~~~f~~~a~~~~~~~a  149 (194)
                      .++.+|++.....|+..- +|.+||..+|.+|.+|+.+.+ + |++|+.+|.+++++|.++|+++++..-
T Consensus       100 ~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr  169 (258)
T KOG0429|consen  100 KSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASR  169 (258)
T ss_pred             CccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            999999998777798776 799999999999999998876 4 999999999999999999999988543

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=7e-22  Score=157.08  Aligned_cols=131  Identities=30%  Similarity=0.578  Sum_probs=107.3

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      .+.|||++|.++|+ + |...+...|.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|    ||-.
T Consensus        11 paVkRlmkEa~El~-~-Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLT----pNGR   84 (314)
T KOG0428|consen   11 PAVKRLMKEAAELK-D-PTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLT----PNGR   84 (314)
T ss_pred             HHHHHHHHHHHHhc-C-chhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEc----CCCc
Confidence            37899999999999 4 4466777889999999999999999999999999999999999999999999998    5532


Q ss_pred             CC-Ccccccccc---cCCCCcccCHHHHHHHHHHhhCC-CCC-----CCchhHHHHHHHHHCHHHHHHHHHHHHHH
Q 029412           82 SQ-SGAICLDIL---KDQWSPALTLKTALLSVQALLSA-PAP-----DDPQDAVVAQQYLKDHQTFLSTARYWTES  147 (194)
Q Consensus        82 ~~-~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~-p~~-----~~p~n~~a~~~~~~~~~~f~~~a~~~~~~  147 (194)
                      .+ +-+|||++.   ++.|.|+++|++.|+.|..+|-. |+-     +-|.         +.|....++.++|..+
T Consensus        85 FE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~GAlGSlDYpp---------~ERr~LAkkS~e~~ck  151 (314)
T KOG0428|consen   85 FEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPEGALGSLDYPP---------EERRALAKKSQEFCCK  151 (314)
T ss_pred             eeeCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCCCccccCcCCH---------HHHHHHHHhhcccCcc
Confidence            22 567999987   48999999999999999998864 432     2221         3455666777777665

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.4e-17  Score=154.55  Aligned_cols=109  Identities=33%  Similarity=0.680  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccc--eecccccC
Q 029412            5 SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTK--VWHPNISS   82 (194)
Q Consensus         5 ~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~Hpnv~~   82 (194)
                      +..+.|++-|..+. +.||.|...++.+...++.|.|+++|||+.|.|.|++.||++||.+||.|...+.  +++||.| 
T Consensus       854 ~~~~~~~~~~~~~~-~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly-  931 (1101)
T KOG0895|consen  854 KKVQTEWKILPLSL-PSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLY-  931 (1101)
T ss_pred             HHHHHHHHhhhccC-CCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccc-
Confidence            44566777777774 5899999999999999999999999999999999999999999999999999765  7899999 


Q ss_pred             CCccccccccc-------CCCCcccCHHHHHHHHHHhhCC
Q 029412           83 QSGAICLDILK-------DQWSPALTLKTALLSVQALLSA  115 (194)
Q Consensus        83 ~~G~icl~~l~-------~~W~p~~~i~~il~~i~~ll~~  115 (194)
                      ++|+||+++|.       +.|+|+-+|.+||.+||.|+.+
T Consensus       932 ~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~  971 (1101)
T KOG0895|consen  932 EDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN  971 (1101)
T ss_pred             cccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence            69999999994       5799999999999999998765

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=3.6e-15  Score=138.82  Aligned_cols=112  Identities=38%  Similarity=0.695  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccc---eeccc
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTK---VWHPN   79 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~Hpn   79 (194)
                      ..+|+++|++-+.++. +.|+.+.+.+..+...++.|.|+.+|||++|.|.|+|.||..||..||.+.++|.   .+.||
T Consensus       283 ~skrv~ke~~llskdl-pEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN  361 (1101)
T KOG0895|consen  283 WSKKVAKELKLLSKDL-PEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN  361 (1101)
T ss_pred             hHHHHHHHhhhhcccC-CCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence            4689999999999994 6899999999999999999999999999999999999999999999999999876   78999


Q ss_pred             ccCCCccccccccc-------CCCCcc-cCHHHHHHHHHHhhCCC
Q 029412           80 ISSQSGAICLDILK-------DQWSPA-LTLKTALLSVQALLSAP  116 (194)
Q Consensus        80 v~~~~G~icl~~l~-------~~W~p~-~~i~~il~~i~~ll~~p  116 (194)
                      .| .+|+||+++|.       +.|+|. -++.++|.+||.++.+-
T Consensus       362 lY-n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e  405 (1101)
T KOG0895|consen  362 LY-NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE  405 (1101)
T ss_pred             cc-cCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence            99 48999999983       679999 78999999999998764

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=5.5e-15  Score=107.92  Aligned_cols=114  Identities=26%  Similarity=0.380  Sum_probs=94.6

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecC-CC--ceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVS-DN--LVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHP   78 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~-~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   78 (194)
                      .+.-||..|+..-++...+..+++...+ +|  +..|.++|.||+.|+||+-+|.++|.+-++||..||+|+|.+++--+
T Consensus         5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~   84 (138)
T KOG0896|consen    5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN   84 (138)
T ss_pred             ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence            3566888888888776544445665543 34  56899999999999999999999999999999999999999999888


Q ss_pred             cccCCCccccccccc--CCCCcccCHHHHHHHHHHhhCC
Q 029412           79 NISSQSGAICLDILK--DQWSPALTLKTALLSVQALLSA  115 (194)
Q Consensus        79 nv~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~  115 (194)
                      .|.+.+|.|.-..+.  .+|+-.+++..+|..++.+|..
T Consensus        85 gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~  123 (138)
T KOG0896|consen   85 GVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS  123 (138)
T ss_pred             ccccCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence            898888888754432  7999999999999999876554

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=2.3e-08  Score=71.29  Aligned_cols=92  Identities=24%  Similarity=0.426  Sum_probs=65.6

Q ss_pred             EEEEeeCCCCCCCCCCCcccccceecccccCCCccccccccc-CCCCcccCHHHHHHHHHHhhCCCC--CCCchhHHHHH
Q 029412           52 FRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPA--PDDPQDAVVAQ  128 (194)
Q Consensus        52 f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~--~~~p~n~~a~~  128 (194)
                      .-+.+.|+++||+.||.++...|+..-.-.-++|.||+.+|. .+|+.+++|+.++++|..++..-.  ...+++.+-- 
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk-   91 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK-   91 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence            446788999999999999988765444322368999999994 899999999999999999888754  3444443322 


Q ss_pred             HHH--HCHHHHHHHHHHH
Q 029412          129 QYL--KDHQTFLSTARYW  144 (194)
Q Consensus       129 ~~~--~~~~~f~~~a~~~  144 (194)
                      +|.  .--+.|+..++..
T Consensus        92 ~~s~~qa~~sfksLv~~h  109 (122)
T KOG0897|consen   92 LYSHSQAQQSFKSLVQIH  109 (122)
T ss_pred             HhhHHHHHHHHHHHHHHH
Confidence            442  2344555555543

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.62  E-value=6.8e-08  Score=72.27  Aligned_cols=67  Identities=30%  Similarity=0.710  Sum_probs=60.6

Q ss_pred             CCCeEEEEeeCCCCCCCCCCCcccccce---ecccccCCCccccc---ccccCCCCcccCHHHHHHHHHHhhCC
Q 029412           48 EGGTFRLDITLPDGYPFEPPKMHFVTKV---WHPNISSQSGAICL---DILKDQWSPALTLKTALLSVQALLSA  115 (194)
Q Consensus        48 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~Hpnv~~~~G~icl---~~l~~~W~p~~~i~~il~~i~~ll~~  115 (194)
                      .|+.+.+.|.||+.||..||.|....+.   +-|||+. +|.+|+   +...+.|.|.-.+.++|..++.+|.+
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~  106 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED  106 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999988554   6899995 999999   77789999999999999999999884

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=98.26  E-value=2.3e-06  Score=49.72  Aligned_cols=36  Identities=44%  Similarity=0.639  Sum_probs=33.0

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHh
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKL  191 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l  191 (194)
                      +++.+++|++|||++..|+.||...+++.+.|++.|
T Consensus         2 ~~~~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    2 DEEKVQQLMEMGFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            478899999999999999999999999999999876

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>smart00165 UBA Ubiquitin associated domain

Probab=98.25  E-value=2.5e-06  Score=49.43  Aligned_cols=36  Identities=39%  Similarity=0.606  Sum_probs=33.9

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412          157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLL  192 (194)
Q Consensus       157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~  192 (194)
                      ++.++.|++|||+++.|+.||+..+||.+.|++.|+
T Consensus         2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d~~~A~~~L~   37 (37)
T smart00165        2 EEKIDQLLEMGFSREEALKALRAANGNVERAAEYLL   37 (37)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence            578999999999999999999999999999999875

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>cd00194 UBA Ubiquitin Associated domain

Probab=98.20  E-value=3.9e-06  Score=48.88  Aligned_cols=37  Identities=38%  Similarity=0.607  Sum_probs=34.7

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      ++.+++|.+|||+++.|+.||...+||.+.|++.|++
T Consensus         2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A~~~L~~   38 (38)
T cd00194           2 EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLLE   38 (38)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            5789999999999999999999999999999999874

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=98.08  E-value=1.3e-05  Score=59.08  Aligned_cols=79  Identities=32%  Similarity=0.592  Sum_probs=54.1

Q ss_pred             CceEEEEEEeCCCCCCCCCCeEE--EEeeCCCCCCCCCCCcccccce-----ecccccCCCcccccccccCCCCc-ccCH
Q 029412           31 NLVHLTGIIPGPVGTPYEGGTFR--LDITLPDGYPFEPPKMHFVTKV-----WHPNISSQSGAICLDILKDQWSP-ALTL  102 (194)
Q Consensus        31 ~~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~i-----~Hpnv~~~~G~icl~~l~~~W~p-~~~i  102 (194)
                      .+....++|.-    .|.|..|.  +.|-+|.+||..||.+......     -+.+||. +|+|.+..| ++|++ ..++
T Consensus        31 ~LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~-~G~v~~pyL-~~W~~~~s~L  104 (121)
T PF05743_consen   31 LLLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDS-NGRVYLPYL-QNWNPPSSNL  104 (121)
T ss_dssp             EEEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-T-TSBB-SHHH-HT--TTTS-H
T ss_pred             eEEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECC-CCCEeCchh-ccCCCCCCCH
Confidence            45566666652    37788875  6677899999999999876332     2448994 899999888 77887 7789


Q ss_pred             HHHHHHHHHhhCC
Q 029412          103 KTALLSVQALLSA  115 (194)
Q Consensus       103 ~~il~~i~~ll~~  115 (194)
                      .+++..+...|.+
T Consensus       105 ~~lv~~l~~~F~~  117 (121)
T PF05743_consen  105 VDLVQELQAVFSE  117 (121)
T ss_dssp             HHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHhH
Confidence            9999998887764

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=97.62  E-value=7.2e-05  Score=65.13  Aligned_cols=39  Identities=26%  Similarity=0.465  Sum_probs=37.6

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .++.|+.+++|||++.+|+.||++..+..++|+|||++|
T Consensus       156 ~e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~tG  194 (378)
T TIGR00601       156 RETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLLTG  194 (378)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence            478999999999999999999999999999999999998

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.001  Score=56.32  Aligned_cols=82  Identities=32%  Similarity=0.580  Sum_probs=61.8

Q ss_pred             CceEEEEEEeCCCCCCCCCCeEE--EEeeCCCCCCCCCCCcccccc-----eecccccCCCcccccccccCCCC-cccCH
Q 029412           31 NLVHLTGIIPGPVGTPYEGGTFR--LDITLPDGYPFEPPKMHFVTK-----VWHPNISSQSGAICLDILKDQWS-PALTL  102 (194)
Q Consensus        31 ~~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~Hpnv~~~~G~icl~~l~~~W~-p~~~i  102 (194)
                      +++...++|.    .+|.|..|.  +.|-+++.||..||.+.....     --|-|||. +|.|.|..| .+|. |+.++
T Consensus        51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~-nG~V~LPYL-h~W~~pssdL  124 (365)
T KOG2391|consen   51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDP-NGKVYLPYL-HNWDPPSSDL  124 (365)
T ss_pred             chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCC-CCeEechhh-ccCCCccchH
Confidence            4555566665    457787776  556679999999999877522     13899995 999999999 7786 55689


Q ss_pred             HHHHHHHHHhhCCCCC
Q 029412          103 KTALLSVQALLSAPAP  118 (194)
Q Consensus       103 ~~il~~i~~ll~~p~~  118 (194)
                      ..++..+...|.++.+
T Consensus       125 v~Liq~l~a~f~~~pP  140 (365)
T KOG2391|consen  125 VGLIQELIAAFSEDPP  140 (365)
T ss_pred             HHHHHHHHHHhcCCCc
Confidence            9999888888876443

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=97.13  E-value=0.00032  Score=52.33  Aligned_cols=97  Identities=20%  Similarity=0.261  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHhc------CCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCe--EEEEeeCCCCCCCCCCCcccccce
Q 029412            4 FSRVQKELQECSKD------IEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGT--FRLDITLPDGYPFEPPKMHFVTKV   75 (194)
Q Consensus         4 ~~RL~~E~~~l~~~------~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~--f~~~i~fp~~YP~~pP~v~f~t~i   75 (194)
                      ..||..||..|-+.      .....+.+.. +.+=+.|.+..--    .|.--.  |.+++.+|..||..||.|..-.--
T Consensus        26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLd  100 (161)
T PF08694_consen   26 VQRLKEEYQALIKYVENNKENDNDWFRLES-NKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPELD  100 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GGGT
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceeccccC
Confidence            47999999987652      2335566663 3344567654431    123334  445566699999999998763110


Q ss_pred             e-cccccCCCccccccccc-CCC---CcccCHHHHH
Q 029412           76 W-HPNISSQSGAICLDILK-DQW---SPALTLKTAL  106 (194)
Q Consensus        76 ~-Hpnv~~~~G~icl~~l~-~~W---~p~~~i~~il  106 (194)
                      - ..-.| .+|+||++.-. .-|   .|.++|...|
T Consensus       101 GKTaKMY-RGGkIClt~HFkPLWakN~PkfGIaHal  135 (161)
T PF08694_consen  101 GKTAKMY-RGGKICLTDHFKPLWAKNVPKFGIAHAL  135 (161)
T ss_dssp             TT-SSBC-CCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred             Cchhhhh-cCceEeeecccchhhhhcCCchhHHHHH
Confidence            0 01223 48999998653 334   4666766554

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=97.04  E-value=0.00081  Score=56.81  Aligned_cols=39  Identities=31%  Similarity=0.484  Sum_probs=37.6

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .+..++++.+||++++.++.||++..|..++|+|+|++|
T Consensus       135 ~e~~V~~Im~MGy~re~V~~AlRAafNNPeRAVEYLl~G  173 (340)
T KOG0011|consen  135 YEQTVQQIMEMGYDREEVERALRAAFNNPERAVEYLLNG  173 (340)
T ss_pred             hHHHHHHHHHhCccHHHHHHHHHHhhCChhhhHHHHhcC
Confidence            488999999999999999999999999999999999997

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=96.75  E-value=0.016  Score=42.58  Aligned_cols=90  Identities=24%  Similarity=0.415  Sum_probs=62.8

Q ss_pred             CCeEEEecCCCceEEEEEEeC--CCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccCCCccc--ccccc----
Q 029412           21 SGIKVTPVSDNLVHLTGIIPG--PVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAI--CLDIL----   92 (194)
Q Consensus        21 ~~i~v~~~~~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~G~i--cl~~l----   92 (194)
                      .|+.++...+.-..|.+ |.|  .+.+.|.+..-.+-|.+|..||..+|.+.+..|-....   .+|.|  |-+..    
T Consensus        12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~---~G~~iP~~~~~~~~~~   87 (122)
T PF14462_consen   12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA---DGGPIPNAAEVTQTFD   87 (122)
T ss_pred             cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc---CCCcCCchhcchhhcC
Confidence            47778776666666765 555  56778999999999999999999999877765433211   12334  43322    


Q ss_pred             ----------cCCCCccc-CHHHHHHHHHHhhC
Q 029412           93 ----------KDQWSPAL-TLKTALLSVQALLS  114 (194)
Q Consensus        93 ----------~~~W~p~~-~i~~il~~i~~ll~  114 (194)
                                ...|+|.. ++.+.|..|...|.
T Consensus        88 G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~  120 (122)
T PF14462_consen   88 GRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA  120 (122)
T ss_pred             CeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence                      14688887 68888888877654

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=96.02  E-value=0.011  Score=41.80  Aligned_cols=69  Identities=19%  Similarity=0.237  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeC--CCCCCCCCCeEEEEeeCCCCCCCCCCCcccccce
Q 029412            5 SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPG--PVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKV   75 (194)
Q Consensus         5 ~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   75 (194)
                      .+.+.|+..|+.--+ ... ......+...+.+.+.+  ...+.-....+.+.+.||++||..||.|...+..
T Consensus         4 e~~~~EieaL~sIy~-~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~   74 (113)
T PF05773_consen    4 EQQEEEIEALQSIYP-DDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK   74 (113)
T ss_dssp             HHHHHHHHHHHHHSS-SSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred             HHHHHHHHHHHHHcC-CCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence            467788888887522 222 23344555667777732  2344445668999999999999999999876543

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.32  E-value=0.027  Score=41.51  Aligned_cols=86  Identities=20%  Similarity=0.376  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCe----------EEEEeeCCCCCCCCCCCccccc
Q 029412            4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGT----------FRLDITLPDGYPFEPPKMHFVT   73 (194)
Q Consensus         4 ~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~YP~~pP~v~f~t   73 (194)
                      .+||..||+.|-.... .+-   -.++|   |.-.=..++||-|-|..          |.+++.+|-.||...|.+..-.
T Consensus        29 vqrlkeey~sli~yvq-nnk---~~d~d---wfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpe  101 (167)
T KOG3357|consen   29 VQRLKEEYQSLIAYVQ-NNK---SNDND---WFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPE  101 (167)
T ss_pred             HHHHHHHHHHHHHHHH-hCc---ccCCc---ceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccc
Confidence            5799999998876311 000   01122   22222345566665542          4455556999999999886521


Q ss_pred             cee-cccccCCCcccccccc-cCCCC
Q 029412           74 KVW-HPNISSQSGAICLDIL-KDQWS   97 (194)
Q Consensus        74 ~i~-Hpnv~~~~G~icl~~l-~~~W~   97 (194)
                      --- .--.+ .+|+||+.-- +.-|.
T Consensus       102 ldgktakmy-rggkiclt~hfkplwa  126 (167)
T KOG3357|consen  102 LDGKTAKMY-RGGKICLTDHFKPLWA  126 (167)
T ss_pred             cCchhhhhh-cCceEeeccccchhhh
Confidence            100 01122 4799998643 34564

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=95.25  E-value=0.05  Score=47.58  Aligned_cols=73  Identities=21%  Similarity=0.270  Sum_probs=57.2

Q ss_pred             hhHHHHHHHHHCHHHHHHHHHHHHHH-------------HcC----C---CCC--chHHHHHHHHhcCCChhHHHHHHHH
Q 029412          122 QDAVVAQQYLKDHQTFLSTARYWTES-------------FAK----T---SSL--GVEEKVQKLVEMGFPESQVRSTLEI  179 (194)
Q Consensus       122 ~n~~a~~~~~~~~~~f~~~a~~~~~~-------------~a~----~---~~~--~~~~~~~~~~~~g~~~~~~~~al~~  179 (194)
                      -|++++++.++|.+.|.+...+-...             .+.    .   ...  .+.+-|+.|+.+||+++.|+.|.-+
T Consensus       281 ~nP~l~q~I~~n~e~Fl~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lT~eE~~AIeRL~~LGF~r~~viqaY~A  360 (378)
T TIGR00601       281 ENPQLLQQISQHPEQFLQMLNEPVGELAGESDMEGGVGAIAEAGLPQMNQIQVTPEEKEAIERLCALGFDRGLVIQAYFA  360 (378)
T ss_pred             hCHHHHHHHHHCHHHHHHHhcCcccccccccccccccccccccCcccccccccCHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            38899999999999999987654311             000    0   011  1247999999999999999999999


Q ss_pred             hCCCHHHHHHHhhcC
Q 029412          180 VGGDENMALEKLLSS  194 (194)
Q Consensus       180 ~~~~~~~~~e~l~~~  194 (194)
                      ++=+++.|+.+|+++
T Consensus       361 CdKNEelAAn~Lf~~  375 (378)
T TIGR00601       361 CDKNEELAANYLLSQ  375 (378)
T ss_pred             cCCcHHHHHHHHHhh
Confidence            999999999999863

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=94.97  E-value=0.14  Score=35.85  Aligned_cols=26  Identities=27%  Similarity=0.627  Sum_probs=22.1

Q ss_pred             CCCeEEEEeeCCCCCCCCCCCccccc
Q 029412           48 EGGTFRLDITLPDGYPFEPPKMHFVT   73 (194)
Q Consensus        48 ~gg~f~~~i~fp~~YP~~pP~v~f~t   73 (194)
                      ....+.+.+.||++||..+|.|.+.+
T Consensus        39 ~~~~~~l~~~~p~~YP~~~P~i~~~~   64 (107)
T smart00591       39 QYVSLTLQVKLPENYPDEAPPISLLN   64 (107)
T ss_pred             cceEEEEEEECCCCCCCCCCCeEEEC
Confidence            34568899999999999999988765

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=94.78  E-value=0.084  Score=31.35  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=28.8

Q ss_pred             HHHHHHHHh-cCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          157 EEKVQKLVE-MGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       157 ~~~~~~~~~-~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      ++++..+++ -|.++..|+..|+.++|+.+.|+..-+.
T Consensus         1 ~e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~   38 (43)
T PF14555_consen    1 DEKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFD   38 (43)
T ss_dssp             HHHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            456777776 4899999999999999999999976553

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=94.58  E-value=0.051  Score=41.95  Aligned_cols=61  Identities=20%  Similarity=0.371  Sum_probs=45.8

Q ss_pred             EEeeCCCCCCCCCCCccccccee---cccccCCC-----ccccccccc-CCCCcccCHHHHHHHHHHhhCC
Q 029412           54 LDITLPDGYPFEPPKMHFVTKVW---HPNISSQS-----GAICLDILK-DQWSPALTLKTALLSVQALLSA  115 (194)
Q Consensus        54 ~~i~fp~~YP~~pP~v~f~t~i~---Hpnv~~~~-----G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~  115 (194)
                      +.|.|+.+||..+|.|.+.-..|   +||+.+ +     ..+|+.--. ..|.+..+++.+|..|...|.+
T Consensus        57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~  126 (162)
T PF14457_consen   57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD  126 (162)
T ss_pred             EEEEecCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence            56899999999999877764432   566664 3     679985443 5788999999999888877653

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=93.74  E-value=0.14  Score=30.13  Aligned_cols=38  Identities=34%  Similarity=0.491  Sum_probs=32.5

Q ss_pred             HHHHHHHHhc--CCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          157 EEKVQKLVEM--GFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       157 ~~~~~~~~~~--g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      ++.++.|.+|  .++......+|.+++++.+.|++.|+.+
T Consensus         2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~   41 (42)
T PF02845_consen    2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM   41 (42)
T ss_dssp             HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            4667888885  8999999999999999999999999864

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle

Probab=92.15  E-value=0.18  Score=31.71  Aligned_cols=29  Identities=24%  Similarity=0.389  Sum_probs=22.6

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhCCCH
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVGGDE  184 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~  184 (194)
                      +.+.++.+++|||++..++-+|+.+|.+.
T Consensus         9 ~~~lVd~F~~mGF~~dkVvevlrrlgik~   37 (55)
T PF09288_consen    9 DKDLVDQFENMGFERDKVVEVLRRLGIKS   37 (55)
T ss_dssp             SHHHHHHHHHHT--HHHHHHHHHHS--SS
T ss_pred             CHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence            46889999999999999999999998755

This domain is predominantly found in fungi []. ; PDB: 1TTE_A.

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]

Probab=89.81  E-value=0.51  Score=43.85  Aligned_cols=55  Identities=24%  Similarity=0.381  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHcCCCCC-----------------chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          139 STARYWTESFAKTSSL-----------------GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       139 ~~a~~~~~~~a~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      +.|-.|...|...+..                 .+++.+.-+++|||.++.|++||.+.|.++++|++-+++
T Consensus       601 EaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~  672 (763)
T KOG0944|consen  601 EAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFS  672 (763)
T ss_pred             HHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHh
Confidence            5677888887775421                 236788888999999999999999999999999998774

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=89.23  E-value=0.85  Score=38.94  Aligned_cols=72  Identities=22%  Similarity=0.298  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHCHHHHHHHHHHHHHH--------HcCCCC-----C--chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHH
Q 029412          123 DAVVAQQYLKDHQTFLSTARYWTES--------FAKTSS-----L--GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMA  187 (194)
Q Consensus       123 n~~a~~~~~~~~~~f~~~a~~~~~~--------~a~~~~-----~--~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~  187 (194)
                      |+...++..+|.+.|.+...+=+..        -+....     .  ...+-|+-|..+||++.-++.|.-+++=+++.|
T Consensus       250 nP~L~q~Iq~nqe~Fl~mlnep~~~~~~~~~~~~~~~~~~~~I~vtpee~eAIeRL~alGF~ralViqayfACdKNEelA  329 (340)
T KOG0011|consen  250 NPQLLQLIQENQEAFLQLLNEPVEGGDGGGTGAPAAEGPGHQIQVTPEEKEAIERLEALGFPRALVIQAYFACDKNEELA  329 (340)
T ss_pred             CHHHHHHHHHHHHHHHHHhhcccccccccccccccccCCcceEecCHHHHHHHHHHHHhCCcHHHHHHHHHhcCccHHHH
Confidence            5666677778888888877643332        000000     0  124789999999999999999999999999999


Q ss_pred             HHHhhcC
Q 029412          188 LEKLLSS  194 (194)
Q Consensus       188 ~e~l~~~  194 (194)
                      +.+|+++
T Consensus       330 AN~Ll~~  336 (340)
T KOG0011|consen  330 ANYLLSH  336 (340)
T ss_pred             HHHHHhh
Confidence            9999863

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=88.67  E-value=1.6  Score=25.56  Aligned_cols=38  Identities=24%  Similarity=0.487  Sum_probs=32.1

Q ss_pred             HHHHHHHHhc--CCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          157 EEKVQKLVEM--GFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       157 ~~~~~~~~~~--g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      ++.++.|.+|  ..+...++..|++.+++.+.|++.|+.+
T Consensus         3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~   42 (43)
T smart00546        3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG   42 (43)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            4566777775  7888899999999999999999999865

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=88.32  E-value=1.2  Score=32.41  Aligned_cols=40  Identities=35%  Similarity=0.406  Sum_probs=34.5

Q ss_pred             chHHHHHHHHh-cCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          155 GVEEKVQKLVE-MGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       155 ~~~~~~~~~~~-~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .+++.++.+++ -|-++..|+.||+++++|.-.|.-.|-++
T Consensus        75 i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~~~  115 (115)
T PRK06369         75 IPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSSE  115 (115)
T ss_pred             CCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHhcC
Confidence            35788888877 59999999999999999999999877653

>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL

Probab=86.56  E-value=1.7  Score=36.75  Aligned_cols=86  Identities=27%  Similarity=0.483  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccCC
Q 029412            4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQ   83 (194)
Q Consensus         4 ~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~   83 (194)
                      .++|.+|+.++..+   ..+.+. .++++...++.+..      +.....++|.+|.+||.++|.+..--|+        
T Consensus       101 ys~ll~EIe~IGW~---kl~~i~-~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~--------  162 (291)
T PF09765_consen  101 YSNLLKEIEAIGWD---KLVQIQ-FDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI--------  162 (291)
T ss_dssp             C-CHHHHHHHHHCG---CCEEEE-E-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS--------
T ss_pred             HHHHHHHHHHhccc---cceEEe-cCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc--------
Confidence            46788899988876   245443 36688889999883      2357889999999999999965332211        


Q ss_pred             CcccccccccCCCCc-ccCHHHHHHHHHHhhC
Q 029412           84 SGAICLDILKDQWSP-ALTLKTALLSVQALLS  114 (194)
Q Consensus        84 ~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~  114 (194)
                            . +...|.+ ..++.+++...+..+.
T Consensus       163 ------~-~~~~w~~~~ssL~~v~~qF~~~le  187 (291)
T PF09765_consen  163 ------P-FSLSWSPSQSSLKDVVQQFQEALE  187 (291)
T ss_dssp             --------HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred             ------c-hhhhhcccccCHHHHHHHHHHHHH
Confidence                  1 1134777 5577777766655543

FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.50  E-value=2.9  Score=39.66  Aligned_cols=67  Identities=13%  Similarity=0.216  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCe-EEEEeeCCCCCCC-CCCCcccccc
Q 029412            5 SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGT-FRLDITLPDGYPF-EPPKMHFVTK   74 (194)
Q Consensus         5 ~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~-f~~~i~fp~~YP~-~pP~v~f~t~   74 (194)
                      +-|..|+.-+...  .+.+.++-.+-.-..-.+.+-||-.-. .|-+ .++.|.||.+||. .+|+++|..+
T Consensus       423 QnLgeE~S~Ig~k--~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~  491 (1081)
T KOG0309|consen  423 QNLGEEFSLIGVK--IRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP  491 (1081)
T ss_pred             hhHHhHHhHhhcc--ccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence            3466777776655  356666533333345566777653322 3334 4789999999999 5799988643

>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function

Probab=85.42  E-value=2.4  Score=27.03  Aligned_cols=37  Identities=32%  Similarity=0.481  Sum_probs=29.5

Q ss_pred             HHHHHHHhc-C-CChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          158 EKVQKLVEM-G-FPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       158 ~~~~~~~~~-g-~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      ..||.+.+. | ..+.+.-..|.++|-|.++|++.|++|
T Consensus         7 k~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q   45 (60)
T PF06972_consen    7 KTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ   45 (60)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence            345555542 3 588999999999999999999999875

>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=85.03  E-value=3  Score=33.49  Aligned_cols=68  Identities=21%  Similarity=0.258  Sum_probs=40.3

Q ss_pred             CchHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCC--CCCCCeEEEEeeCCCCCCCCCCCccc
Q 029412            1 MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGT--PYEGGTFRLDITLPDGYPFEPPKMHF   71 (194)
Q Consensus         1 m~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~t--py~gg~f~~~i~fp~~YP~~pP~v~f   71 (194)
                      |+...-...|+..|..--+ .-+ ....+.++..+.+.|.-..+.  -|.| .+.+.++++.+||..||-|.+
T Consensus         1 Ms~~EeQe~E~EaLeSIY~-de~-~~i~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~   70 (215)
T KOG4018|consen    1 MSQYEEQEEELEALESIYP-DEF-KHINSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA   70 (215)
T ss_pred             CCcHHHHHHHHHHHHHhcc-chh-hhhhccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence            5555456677777776532 222 112233444466666522211  1222 788999999999999999943

>TIGR00264 alpha-NAC-related protein

Probab=83.37  E-value=2.8  Score=30.52  Aligned_cols=37  Identities=27%  Similarity=0.416  Sum_probs=32.3

Q ss_pred             chHHHHHHHHh-cCCChhHHHHHHHHhCCCHHHHHHHh
Q 029412          155 GVEEKVQKLVE-MGFPESQVRSTLEIVGGDENMALEKL  191 (194)
Q Consensus       155 ~~~~~~~~~~~-~g~~~~~~~~al~~~~~~~~~~~e~l  191 (194)
                      .+++.++.+++ -|-++..|+.||++++||.-+|.-.|
T Consensus        77 i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~L  114 (116)
T TIGR00264        77 ITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMKL  114 (116)
T ss_pred             CCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHh
Confidence            45788888876 59999999999999999999998665

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin

Probab=81.11  E-value=5.7  Score=24.21  Aligned_cols=38  Identities=24%  Similarity=0.272  Sum_probs=30.5

Q ss_pred             hHHHHHHHHh--cCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          156 VEEKVQKLVE--MGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       156 ~~~~~~~~~~--~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      +++.+.+...  .|..++-.+..|..-|.|.+.|+-.|+|
T Consensus         9 PedlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLs   48 (53)
T PF11547_consen    9 PEDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLS   48 (53)
T ss_dssp             -HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhc
Confidence            4777777754  6999999999999999999999988875

Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	194
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		6e-52
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		2e-44
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		5e-44
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		6e-44
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		7e-44
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		7e-44
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		5e-43
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		1e-42
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		3e-40
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		7e-39
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		1e-38
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		8e-37
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		4e-35
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-34
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		3e-34
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		4e-34
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		8e-34
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		9e-34
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		1e-33
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		1e-33
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		1e-33
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		2e-33
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		2e-33
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		3e-33
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-33
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		3e-33
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		3e-33
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		3e-33
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		3e-33
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		5e-33
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		5e-33
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		6e-33
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		6e-33
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		7e-33
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		8e-33
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		1e-32
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-32
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-32
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		2e-32
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		2e-32
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		2e-32
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		5e-32
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		6e-32
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		7e-32
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		8e-32
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		2e-31
3jvz_A	146	E2~ubiquitin-Hect Length = 146		2e-31
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		3e-31
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		6e-31
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		3e-30
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		6e-30
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		2e-28
1jas_A	152	Hsubc2b Length = 152		2e-24
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		3e-24
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		3e-24
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		1e-23
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		1e-22
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		3e-22
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		5e-21
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		6e-21
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		8e-21
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		2e-20
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		8e-20
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		1e-19
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		2e-19
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		2e-19
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		2e-19
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		2e-19
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		2e-19
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		2e-19
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		9e-19
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		1e-18
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		1e-18
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		1e-18
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		3e-18
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		4e-18
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		5e-18
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		8e-17
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		2e-16
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		2e-16
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		1e-15
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		3e-15
2edi_A	173	Solution Structure Of The Uq_con Domain From Human		3e-15
3fn1_B	167	E2-Ring Expansion Of The Nedd8 Cascade Confers Spec		4e-15
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		4e-15
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		4e-15
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		9e-15
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		1e-14
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		2e-14
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		3e-14
1y8x_A	160	Structural Basis For Recruitment Of Ubc12 By An E2-		5e-14
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		2e-13
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		4e-13
2nvu_C	180	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		7e-13
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		2e-12
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		2e-12
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		2e-12
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		2e-12
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		4e-11
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		4e-11
2h2y_A	136	Crystal Structure Of Ubiquitin Conjugating Enzyme E		5e-10
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		1e-09
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		2e-09
2f4w_A	187	Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1		9e-08
3ceg_A	323	Crystal Structure Of The Ubc Domain Of Baculoviral		2e-07
4ds2_A	167	Ubiquitin Conjugating Enzyme (Putative) From Trypan		3e-06
2gmi_B	137	Mms2UBC13~UBIQUITIN Length = 137		5e-06
1jat_B	138	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		5e-06
1zgu_A	139	Solution Structure Of The Human Mms2-Ubiquitin Comp		2e-05
1j74_A	145	Crystal Structure Of Mms2 Length = 145		2e-05
3von_B	138	Crystalstructure Of The Ubiquitin Protease Length =		2e-05
4epo_A	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		3e-05
2hlw_A	170	Solution Structure Of The Human Ubiquitin-Conjugati		4e-05
2qgx_A	169	Ubiquitin-Conjugating Enzyme E2q Length = 169		4e-05
2c2v_C	142	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		4e-05
2a4d_A	160	Structure Of The Human Ubiquitin-Conjugating Enzyme		5e-05
1zuo_A	186	Structure Of Human Ubiquitin-Conjugating Enzyme (Ub		2e-04
3e95_C	158	Crystal Structure Of The Plasmodium Falciparum Ubiq		3e-04
2q0v_A	156	Crystal Structure Of Ubiquitin Conjugating Enzyme E		3e-04

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score =  199 bits (507), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 100/193 (51%), Positives = 129/193 (66%), Gaps = 8/193 (4%)
Query: 6   RVQKELQECSKDIEASGIKVTPV---SDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
           R+QKEL    KDIE   ++         N     G I GP GTPYEGG F L IT+P+ Y
Sbjct: 27  RLQKEL----KDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDY 82
Query: 63  PFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQ 122
           P+ PPK+ FVTK+WHPNISSQ+GAICLD+LK++WSPALT++TALLS+QALLS P PDDPQ
Sbjct: 83  PYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQ 142
Query: 123 DAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEK-VQKLVEMGFPESQVRSTLEIVG 181
           DA VA+ Y ++H  F+ TA  WT++FA        E  ++K+ EMGF E Q ++ L    
Sbjct: 143 DAEVAKMYKENHALFVKTASVWTKTFATGPKEEPREVIIKKITEMGFSEDQAKNALIKAN 202
Query: 182 GDENMALEKLLSS 194
            +E +AL  LL +
Sbjct: 203 WNETLALNTLLEN 215

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 100/131 (76%)
Query: 20  ASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPN 79
           + G+    V  ++    G I GP+GTPYEGG F LDI +P  YP+ PPKM FVTK+WHPN
Sbjct: 62  SHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPN 121
Query: 80  ISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLS 139
           ISSQ+GAICLDILK +WSPALT++TALLS+QA+L+ P P DPQDA VA+  +++H  F+ 
Sbjct: 122 ISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQ 181
Query: 140 TARYWTESFAK 150
           TA+ WTE+FAK
Sbjct: 182 TAKLWTETFAK 192

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 86/158 (54%), Positives = 114/158 (72%), Gaps = 2/158 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           R+ KE+Q   KD  A+ I +  VS+ ++ HL G   GP GTPYEGG F +DI +P  YPF
Sbjct: 6   RIMKEIQAV-KDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
           +PPKM F TKV+HPNISS +GAICLDIL++ WSP +TLK+AL+S+QALL +P P+DPQDA
Sbjct: 65  KPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDA 124
Query: 125 VVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQK 162
            VAQ YL+D ++F  TA  WT  +A  +S G +  V++
Sbjct: 125 EVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNVEE 162

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score =  173 bits (438), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 99/197 (50%), Positives = 127/197 (64%), Gaps = 4/197 (2%)
Query: 2   IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
           I   R+++E +E  K  E S   IKV  V +N   L G I GP  TPYEGG ++L+I +P
Sbjct: 6   IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 65
Query: 60  DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
           + YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PD
Sbjct: 66  ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 125
Query: 120 DPQDAVVAQQYLKDHQTFLSTARYWTESFAKT--SSLGVEEKVQKLVEMGFPESQVRSTL 177
           DPQDAVVA QY ++ + F  TAR W   +A    SS    +K++ L  MGF  + V   L
Sbjct: 126 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVAL 185
Query: 178 EIVGGDENMALEKLLSS 194
                D   A E LLS+
Sbjct: 186 SSKSWDVETATELLLSN 202

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score =  172 bits (437), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 99/197 (50%), Positives = 127/197 (64%), Gaps = 4/197 (2%)
Query: 2   IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
           I   R+++E +E  K  E S   IKV  V +N   L G I GP  TPYEGG ++L+I +P
Sbjct: 5   IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 64
Query: 60  DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
           + YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PD
Sbjct: 65  ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 124
Query: 120 DPQDAVVAQQYLKDHQTFLSTARYWTESFAKT--SSLGVEEKVQKLVEMGFPESQVRSTL 177
           DPQDAVVA QY ++ + F  TAR W   +A    SS    +K++ L  MGF  + V   L
Sbjct: 125 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVAL 184
Query: 178 EIVGGDENMALEKLLSS 194
                D   A E LLS+
Sbjct: 185 SSKSWDVETATELLLSN 201

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score =  172 bits (437), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 99/197 (50%), Positives = 127/197 (64%), Gaps = 4/197 (2%)
Query: 2   IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
           I   R+++E +E  K  E S   IKV  V +N   L G I GP  TPYEGG ++L+I +P
Sbjct: 21  IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 80
Query: 60  DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
           + YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PD
Sbjct: 81  ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 140
Query: 120 DPQDAVVAQQYLKDHQTFLSTARYWTESFAKT--SSLGVEEKVQKLVEMGFPESQVRSTL 177
           DPQDAVVA QY ++ + F  TAR W   +A    SS    +K++ L  MGF  + V   L
Sbjct: 141 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVAL 200
Query: 178 EIVGGDENMALEKLLSS 194
                D   A E LLS+
Sbjct: 201 SSKSWDVETATELLLSN 217

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score =  170 bits (430), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 98/197 (49%), Positives = 126/197 (63%), Gaps = 4/197 (2%)
Query: 2   IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
           I   R+++E +E  K  E S   IKV  V +N   L G I GP  TPYEGG ++L+I +P
Sbjct: 57  IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 116
Query: 60  DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
           + YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PD
Sbjct: 117 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 176
Query: 120 DPQDAVVAQQYLKDHQTFLSTARYWTESFAKT--SSLGVEEKVQKLVEMGFPESQVRSTL 177
           DPQDAVVA QY ++ + F  TAR W   +A    SS    +K++ L   GF  + V   L
Sbjct: 177 DPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAAGFDRNAVIVAL 236
Query: 178 EIVGGDENMALEKLLSS 194
                D   A E LLS+
Sbjct: 237 SSKSWDVETATELLLSN 253

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/145 (57%), Positives = 107/145 (73%), Gaps = 2/145 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           R+ KE+Q   KD  A+ I +  VS+ ++ HL G   GP GTPYEGG F +DI +P  YPF
Sbjct: 5   RIMKEIQAV-KDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
           +PPKM F TKV+HPNISS +GAICLDILK+ WSP +TLK+AL+S+QALL +P P+DPQDA
Sbjct: 64  KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA 123
Query: 125 VVAQQYLKDHQTFLSTARYWTESFA 149
            VAQ YL+D ++F  TA  WT  +A
Sbjct: 124 EVAQHYLRDRESFNKTAALWTRLYA 148

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 84/150 (56%), Positives = 107/150 (71%), Gaps = 2/150 (1%)
Query: 2   IDFSRVQKELQECSKDIEASG--IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
           I   R+++E +E  K  E S   IKV  V +N   L G I GP  TPYEGG ++L+I +P
Sbjct: 8   IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 67
Query: 60  DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
           + YPF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PD
Sbjct: 68  ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 127
Query: 120 DPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
           DPQDAVVA QY ++ + F  TAR W   +A
Sbjct: 128 DPQDAVVANQYKQNPEMFKQTARLWAHVYA 157

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score =  156 bits (395), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 101/149 (67%), Gaps = 2/149 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KE Q  + +    GI   PV +N  H   +I GP GTPYEGGT++L++ LP+ YP E
Sbjct: 5   RITKETQNLANE-PPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F+TK++HPNI  + G ICLDILKD+WSPAL ++T LLS+QALLS+P PDDP D+ 
Sbjct: 64  PPKVRFLTKIYHPNI-DKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSK 122
Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTSSL 154
           VA+ + +D       AR W + +A  + L
Sbjct: 123 VAEHFKQDKNDAEHVARQWNKIYANNNVL 151

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/147 (49%), Positives = 100/147 (68%), Gaps = 2/147 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KE Q  + +    GI   PV +N  H   +I GP GTPYEGGT++L++ LP+ YP E
Sbjct: 5   RITKETQNLANE-PPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F+TK++HPNI  + G ICLDILKD+WSPAL ++T LLS+QALLS+P PDDP D+ 
Sbjct: 64  PPKVRFLTKIYHPNI-DKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSK 122
Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTS 152
           VA+ + +D       AR W + +A  +
Sbjct: 123 VAEHFKQDKNDAEHVARQWNKIYANNN 149

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score =  149 bits (377), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 94/144 (65%), Gaps = 2/144 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KEL + SKD   +     PV D++ H    I GP  +PY GG F L+I  P  YPF+
Sbjct: 25  RINKELNDLSKD-PPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFK 83
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK++F TK++HPNI+SQ GAICLDILKDQWSPALT+   LLS+ +LL+ P PDDP    
Sbjct: 84  PPKVNFTTKIYHPNINSQ-GAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPE 142
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A  Y  D   +  TAR W++ +A
Sbjct: 143 IAHLYKSDRMRYDQTAREWSQKYA 166

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/145 (48%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+QKEL+E  +D         PV D++ H T  I GP  +PY+GG F LD+  P  YPF+
Sbjct: 8   RIQKELREIQQD-PPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFK 66
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            P++ F+TKV+HPNI+ ++G ICLDILKDQWSPALTL   LLS+ +LL+ P P DP D  
Sbjct: 67  APRVTFMTKVYHPNIN-KNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPE 125
Query: 126 VAQQYLKDHQTFLSTARYWTESFAK 150
           VA     + + F  TAR WT  +A+
Sbjct: 126 VANVLRANKKQFEDTAREWTRMYAR 150

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/144 (47%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ +EL +  KD  +S     PV D+L H    I GP  +PY GG F L I  P  YPF+
Sbjct: 5   RINRELADLGKDPPSSS-SAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK++F T+++HPNI+S  G+ICLDIL+DQWSPALT+   LLS+ +LL+ P PDDP    
Sbjct: 64  PPKVNFTTRIYHPNINSN-GSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPE 122
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A  Y  D   +  +AR WT  +A
Sbjct: 123 IAHVYKTDRSRYELSAREWTRKYA 146

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/146 (47%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+QKELQ+  +D  A      PV D+L H    I GP  +PY+GG F L I  P  YP
Sbjct: 8   LKRIQKELQDLQRDPPAQ-CSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYP 66
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F TK++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 67  FKPPKVAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 125
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +A  Y  D + +   AR WT+ +A
Sbjct: 126 PDIAHIYKSDKEKYNRLAREWTQKYA 151

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score =  140 bits (353), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+QKELQ+  +D  A      PV D+L H    I GP  +PY+GG F L I  P  YP
Sbjct: 6   LKRIQKELQDLGRDPPAQ-CSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 64
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 65  FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 123
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +A+ Y  D + +   AR WT+ +A
Sbjct: 124 PEIARIYKTDRERYNQLAREWTQKYA 149

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score =  139 bits (351), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KE Q    +    GIK  P   N  +   +I GP  +P+EGGTF+L++ LP+ YP  
Sbjct: 7   RIIKETQRLLAE-PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            PK+ F+TK++HPN+  + G ICLDILKD+WSPAL ++T LLS+QALLSAP PDDP    
Sbjct: 66  APKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 124
Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTS 152
           VA+Q+  +    + TAR WT  +A  +
Sbjct: 125 VAEQWKTNEAQAIETARAWTRLYAMNN 151

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score =  139 bits (350), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KE Q    +    GIK  P   N  +   +I GP  +P+EGGTF+L++ LP+ YP  
Sbjct: 9   RIIKETQRLLAE-PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            PK+ F+TK++HPN+  + G ICLDILKD+WSPAL ++T LLS+QALLSAP PDDP    
Sbjct: 68  APKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 126
Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTS 152
           VA+Q+  +    + TAR WT  +A  +
Sbjct: 127 VAEQWKTNEAQAIETARAWTRLYAMNN 153

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/144 (47%), Positives = 94/144 (65%), Gaps = 2/144 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KE Q    +    GIK  P   N  +   +I GP  +P+EGGTF+L++ LP+ YP  
Sbjct: 5   RIIKETQRLLAE-PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            PK+ F+TK++HPN+  + G ICLDILKD+WSPAL ++T LLS+QALLSAP PDDP    
Sbjct: 64  APKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 122
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           VA+Q+  +    + TAR WT  +A
Sbjct: 123 VAEQWKTNEAQAIETARAWTRLYA 146

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KE Q    +    GIK  P   N  +   +I GP  +P+EGGTF+L++ LP+ YP  
Sbjct: 10  RIIKETQRLLAE-PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            PK+ F+TK++HPN+  + G ICLDILKD+WSPAL ++T LLS+QALLSAP PDDP    
Sbjct: 69  APKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 127
Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTS 152
           VA+Q+  +    + TAR WT  +A  +
Sbjct: 128 VAEQWKTNEAQAIETARAWTRLYAMNN 154

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/144 (47%), Positives = 94/144 (65%), Gaps = 2/144 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KE Q    +    GIK  P   N  +   +I GP  +P+EGGTF+L++ LP+ YP  
Sbjct: 12  RIIKETQRLLAE-PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            PK+ F+TK++HPN+  + G ICLDILKD+WSPAL ++T LLS+QALLSAP PDDP    
Sbjct: 71  APKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 129
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           VA+Q+  +    + TAR WT  +A
Sbjct: 130 VAEQWKTNEAQAIETARAWTRLYA 153

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YP
Sbjct: 8   LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 66
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 67  FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 125
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +A+ Y  D + +   AR WT+ +A
Sbjct: 126 PEIARIYKTDREKYNRIAREWTQKYA 151

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YP
Sbjct: 13  LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 72  FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 130
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +A+ Y  D + +   AR WT+ +A
Sbjct: 131 PEIARIYQTDREKYNRIAREWTQKYA 156

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/144 (48%), Positives = 89/144 (61%), Gaps = 2/144 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KEL +  +D   S     PV D+L H    I GP  +PY GG F L I  P  YPF+
Sbjct: 6   RIAKELSDLERDPPTS-CSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F TK++HPNI++  G ICLDILKDQWSPALTL   LLS+ +LL+   PDDP    
Sbjct: 65  PPKISFTTKIYHPNINAN-GNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPE 123
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A  Y  D   + +TAR WT+ +A
Sbjct: 124 IAHIYKTDRPKYEATAREWTKKYA 147

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YP
Sbjct: 21  LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 80  FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 138
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +A+ Y  D + +   AR WT+ +A
Sbjct: 139 PEIARIYKTDREKYNRIAREWTQKYA 164

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YP
Sbjct: 3   LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 62  FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +A+ Y  D + +   AR WT+ +A
Sbjct: 121 PEIARIYKTDREKYNRIAREWTQKYA 146

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YP
Sbjct: 5   LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 64  FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +A+ Y  D + +   AR WT+ +A
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYA 148

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YP
Sbjct: 5   LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 64  FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +A+ Y  D + +   AR WT+ +A
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYA 148

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 113/196 (57%), Gaps = 12/196 (6%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YPF+
Sbjct: 7   RIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F T+++HPNI+S +G+I LDIL+ QWSPALT+   LLS+ +LL  P PDDP    
Sbjct: 66  PPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTSS------LGVEEKVQKLVEMGFPESQVRSTLEI 179
           +A+ Y  D + +   AR WT+ +A   S      +  ++++Q+ + +  P    R  L +
Sbjct: 125 IARIYKTDREKYNRIAREWTQKYAMGGSAYDEAIMAQQDRIQQEIAVQNPLVSERLELSV 184
Query: 180 V----GGDENMALEKL 191
           +      D+N+  +K+
Sbjct: 185 LYKEYAEDDNIYQQKI 200

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score =  137 bits (344), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 94/146 (64%), Gaps = 2/146 (1%)
Query: 5   SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
            R+ KE ++   D    GI   P  DNL +    I GP  +PYE G F L++ LPD YP 
Sbjct: 6   KRIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPM 64
Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
           E PK+ F+TK++HPNI  + G ICLD+LK  WSPAL ++T LLS+QALL++P P+DP   
Sbjct: 65  EAPKVRFLTKIYHPNID-RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAN 123
Query: 125 VVAQQYLKDHQTFLSTARYWTESFAK 150
            VA+ ++K+ Q   + AR WT+ +AK
Sbjct: 124 DVAEDWIKNEQGAKAKAREWTKLYAK 149

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score =  137 bits (344), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/145 (46%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KE ++   D    GI   P  DNL +    I GP  +PYE G F L++ LPD YP E
Sbjct: 9   RIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            PK+ F+TK++HPNI  + G ICLD+LK  WSPAL ++T LLS+QALL++P P+DP    
Sbjct: 68  APKVRFLTKIYHPNID-RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 126
Query: 126 VAQQYLKDHQTFLSTARYWTESFAK 150
           VA+ ++K+ Q   + AR WT+ +AK
Sbjct: 127 VAEDWIKNEQGAKAKAREWTKLYAK 151

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score =  136 bits (343), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+QKEL +  +D  A      PV D+L H    I GP  + Y+GG F L +  P  YP
Sbjct: 9   LKRIQKELSDLQRDPPAH-CSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F TK++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 68  FKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 126
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +AQ Y  D + +   AR WT+ +A
Sbjct: 127 PDIAQIYKSDKEKYNRHAREWTQKYA 152

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score =  136 bits (343), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+QKEL +  +D  A      PV D+L H    I GP  + Y+GG F L +  P  YP
Sbjct: 21  LKRIQKELSDLQRDPPAH-CSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 79
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F TK++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 80  FKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 138
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +AQ Y  D + +   AR WT+ +A
Sbjct: 139 PDIAQIYKSDKEKYNRHAREWTQKYA 164

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score =  136 bits (343), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+QKEL +  +D  A      PV D+L H    I GP  + Y+GG F L +  P  YP
Sbjct: 5   LKRIQKELSDLQRDPPAH-CSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 63
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F TK++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 64  FKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 122
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +AQ Y  D + +   AR WT+ +A
Sbjct: 123 PDIAQIYKSDKEKYNRHAREWTQKYA 148

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YP
Sbjct: 5   LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F T+++HPNI+S +G+ICLDIL+ QW PALT+   LLS+ +LL  P PDDP  
Sbjct: 64  FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +A+ Y  D + +   AR WT+ +A
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYA 148

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YPF+
Sbjct: 15  RINKELSDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP    
Sbjct: 74  PPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 132
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A+ Y  D   +   +R WT+ +A
Sbjct: 133 IARIYKTDRDKYNRISREWTQKYA 156

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YP
Sbjct: 5   LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F T+++HPNI+S +G+ICLD L+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 64  FKPPKVAFTTRIYHPNINS-NGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +A+ Y  D + +   AR WT+ +A
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYA 148

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+ KEL + ++D  A      PV D++ H      GP  +PY+GG F L I  P  YP
Sbjct: 5   LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 64  FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 122
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +A+ Y  D + +   AR WT+ +A
Sbjct: 123 PEIARIYKTDREKYNRIAREWTQKYA 148

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YP
Sbjct: 2   LKRINKELSDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 61  FKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 119
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +A+ Y  D   +   +R WT+ +A
Sbjct: 120 PEIARIYKTDRDKYNRISREWTQKYA 145

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YPF+
Sbjct: 7   RINKELSDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP    
Sbjct: 66  PPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A+ Y  D   +   +R WT+ +A
Sbjct: 125 IARIYKTDRDKYNRISREWTQKYA 148

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YPF+
Sbjct: 13  RINKELSDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 71
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP    
Sbjct: 72  PPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 130
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A+ Y  D   +   +R WT+ +A
Sbjct: 131 IARIYKTDRDKYNRISREWTQKYA 154

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score =  133 bits (335), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YP
Sbjct: 6   LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 64
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F T+++HPNI+S +G+I LDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 65  FKPPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 123
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +A+ Y  D + +   AR WT+ +A
Sbjct: 124 PEIARIYKTDREKYNRIAREWTQKYA 149

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YP
Sbjct: 21  LKRIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F T+++HPNI+S +G+I LDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 80  FKPPKVAFTTRIYHPNINS-NGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 138
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +A+ Y  D + +   AR WT+ +A
Sbjct: 139 PEIARIYKTDREKYNRIAREWTQKYA 164

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score =  133 bits (334), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 67/145 (46%), Positives = 93/145 (64%), Gaps = 2/145 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KE ++   D    GI   P  DNL +    I GP  +PYE G F L++ LPD YP E
Sbjct: 7   RIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            PK+ F+TK++HPNI  + G I LD+LK  WSPAL ++T LLS+QALL++P P+DP    
Sbjct: 66  APKVRFLTKIYHPNID-RLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124
Query: 126 VAQQYLKDHQTFLSTARYWTESFAK 150
           VA+ ++K+ Q   + AR WT+ +AK
Sbjct: 125 VAEDWIKNEQGAKAKAREWTKLYAK 149

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score =  132 bits (333), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 67/146 (45%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+QKEL +  +D  A   +  PV D+L H    I GP  + Y+GG F L +  P  YP
Sbjct: 9   LKRIQKELSDLQRDPPAH-CRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F TK++HPNI+S +G+I LDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 68  FKPPKIAFTTKIYHPNINS-NGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV 126
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +AQ Y  D + +   AR WT+ +A
Sbjct: 127 PDIAQIYKSDKEKYNRHAREWTQKYA 152

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 4   FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
             R+ KEL + ++D  A   +  PV D++ H    I GP  +PY+GG F L I  P  YP
Sbjct: 3   LKRIHKELNDLARDPPAQ-CRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F+PPK+ F T+++HP I+S +G+I LDIL+ QWSPALT+   LLS+ +LL  P PDDP  
Sbjct: 62  FKPPKVAFTTRIYHPAINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV 120
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
             +A+ Y  D + +   AR WT+ +A
Sbjct: 121 PEIARIYKTDREKYNRIAREWTQKYA 146

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 90/144 (62%), Gaps = 2/144 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YPF+
Sbjct: 4   RIHKELNDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F T+++HPNI+S +G+I LDIL+ QWSPAL +   LLS+ +LL  P PDDP    
Sbjct: 63  PPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPE 121
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A+ Y  D + +   AR WT+ +A
Sbjct: 122 IARIYKTDREKYNRIAREWTQKYA 145

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 90/144 (62%), Gaps = 2/144 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KEL + ++D  A      PV D++ H    I GP  +PY+GG F L I  P  YPF+
Sbjct: 5   RINKELSDLARDPPAQ-CSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F T+++HPNI+S +G+I LDIL+ QWSPALT+   LLS+ +LL  P PDDP    
Sbjct: 64  PPKVAFTTRIYHPNINS-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A+ Y  D   +   +R WT+ +A
Sbjct: 123 IARIYKTDRDKYNRISREWTQKYA 146

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score =  130 bits (326), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KE ++   D    GI   P  DNL +    I GP  +PYE G F L++ LPD YP E
Sbjct: 7   RIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            PK+ F+TK++HP I  + G I LD+LK  WSPAL ++T LLS+QALL++P P+DP    
Sbjct: 66  APKVRFLTKIYHPAID-RLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124
Query: 126 VAQQYLKDHQTFLSTARYWTESFAK 150
           VA+ ++K+ Q   + AR WT+ +AK
Sbjct: 125 VAEDWIKNEQGAKAKAREWTKLYAK 149

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/144 (46%), Positives = 86/144 (59%), Gaps = 2/144 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+QKEL E + D         P  DN+      I GP G+ YEGG F LDIT    YPF+
Sbjct: 7   RIQKELAEITLD-PPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 65
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F T+++H NI+SQ G ICLDILKD WSPALT+   LLS+ +LL+   P DP    
Sbjct: 66  PPKVTFRTRIYHCNINSQ-GVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGS 124
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A QY+ +       AR WT+ +A
Sbjct: 125 IATQYMTNRAEHDRMARQWTKRYA 148

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/144 (45%), Positives = 86/144 (59%), Gaps = 2/144 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+QKEL + + D         P  DN+      I GP G+ YEGG F LDIT    YPF+
Sbjct: 52  RIQKELADITLD-PPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFK 110
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F T+++H NI+SQ G ICLDILKD WSPALT+   LLS+ +LL+   P DP    
Sbjct: 111 PPKVTFRTRIYHCNINSQ-GVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGS 169
Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A QY+ +       AR WT+ +A
Sbjct: 170 IATQYMTNRAEHDRMARQWTKRYA 193

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 5   SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           SR+++EL   + +    GI      D +  L   I G   TPYE G F+L++ +P+ YPF
Sbjct: 7   SRLKRELHMLATE-PPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65
Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDIL----KDQWSPALTLKTALLSVQALLSAPAPDD 120
           EPP++ F+T ++HPNI S +G ICLD+L    K  W P+L + T L S+Q L+S P PDD
Sbjct: 66  EPPQIRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDD 124
Query: 121 PQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKV 160
           P  A ++ ++  +   FL  AR WTE  A+      EE++
Sbjct: 125 PLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEM 164

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 84/137 (61%), Gaps = 9/137 (6%)
Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           M DF R+Q++           G+   P  +N++    +I GP GTP+E GTF+L I   +
Sbjct: 10  MRDFKRLQED--------PPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSE 61
Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
            YP +PP + F++K++HPN+ +  G+ICLDIL+++WSP   + + L S+Q+LL  P P+ 
Sbjct: 62  EYPNKPPTVRFLSKMFHPNVYA-DGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS 120
Query: 121 PQDAVVAQQYLKDHQTF 137
           P ++  AQ Y ++ + +
Sbjct: 121 PANSQAAQLYQENKREY 137

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 84/132 (63%), Gaps = 2/132 (1%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ ++ ++  +D  A G+   P  DN++    II GP  TP+E GTF+L +   + YP +
Sbjct: 8   RLMRDFKKLQEDPPA-GVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PP + F++K++HPN+ +  G+ICLDIL+++WSP   +   L S+Q+LL  P P+ P +++
Sbjct: 67  PPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSL 125
Query: 126 VAQQYLKDHQTF 137
            AQ Y ++ + +
Sbjct: 126 AAQLYQENRREY 137

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 94/163 (57%), Gaps = 21/163 (12%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ ++ ++  +D  A G+   P  DN++    II GP  TP+E GTF+L +   + YP +
Sbjct: 11  RLMRDFKKLQEDPPA-GVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PP + F++K++HPN+ +  G+ICLDIL+++WSP   +   L S+Q+LL  P P+ P +++
Sbjct: 70  PPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSL 128
Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGF 168
            AQ Y ++ + +                   E++VQ++VE  +
Sbjct: 129 AAQLYQENRREY-------------------EKRVQQIVEQSW 152

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 84/142 (59%), Gaps = 9/142 (6%)
Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           M DF R+Q++          +GI   P  +N++    +I GP  TP++GGTF+L +   +
Sbjct: 10  MRDFKRLQQD--------PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSE 61
Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
            YP +PP + FV++++HPNI +  G+ICLDIL++QWSP   +   L S+Q+LL  P P+ 
Sbjct: 62  DYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
Query: 121 PQDAVVAQQYLKDHQTFLSTAR 142
           P ++  A+ Y +  + +    R
Sbjct: 121 PANSEAARMYSESKREYNRRVR 142

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 83/140 (59%), Gaps = 2/140 (1%)
Query: 7   VQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEP 66
           V KE+   + D    GIKV P  ++L  L   I GP GTPY GG FR+ + L   +P  P
Sbjct: 18  VYKEVTTLTAD-PPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASP 76
Query: 67  PKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVV 126
           PK +F+TK++HPN+ + +G IC+++LK  W+  L ++  LL+++ LL  P P+   +   
Sbjct: 77  PKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEA 135
Query: 127 AQQYLKDHQTFLSTARYWTE 146
            +  L++++ + + AR  TE
Sbjct: 136 GRLLLENYEEYAARARLLTE 155

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 83/136 (61%), Gaps = 10/136 (7%)
Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           M DF R++++           G+  +P+ DN++    +I GP  TPYE GTFRL +   +
Sbjct: 10  MRDFKRMKEDA--------PPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDE 61
Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
            YP +PP + F+++++HPN+ + +G ICLDIL+++W+P   + + L S+Q+L + P P  
Sbjct: 62  EYPNKPPHVKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPAS 120
Query: 121 PQDAVVAQQYLKDHQT 136
           P + V A    KDH++
Sbjct: 121 PAN-VEAATLFKDHKS 135

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Query: 5   SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
            R+ KEL+E  K    +   +     NL+   G+I  P   PY+ G FR++I  P  YPF
Sbjct: 5   RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPF 63
Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           +PPK+ F TK++HPNI  + G +CL ++  + W PA      + S+ AL++ P P+ P  
Sbjct: 64  KPPKITFKTKIYHPNI-DEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLR 122
Query: 124 AVVAQQYLKDHQTFLSTARYWTESFA 149
           A +A++Y KD + F   A  +T+ + 
Sbjct: 123 ADLAEEYSKDRKKFCKNAEEFTKKYG 148

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KEL+E  K    +   +     NL+   G+I  P   PY+ G FR++I  P  YPF+
Sbjct: 8   RLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFK 66
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
           PPK+ F TK++HPNI  + G +CL ++  + W PA      + S+ AL++ P P+ P  A
Sbjct: 67  PPKITFKTKIYHPNI-DEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRA 125
Query: 125 VVAQQYLKDHQTFLSTARYWTESFA 149
            +A++Y KD + F   A  +T+ + 
Sbjct: 126 DLAEEYSKDRKKFCKNAEEFTKKYG 150

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 96.3 bits (238), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 6/145 (4%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+Q+EL       +  GI   P SDNL    G I G  GT YE   ++L +  P GYP+ 
Sbjct: 34  RLQQELMTLMMSGD-KGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            P + F+T  +HPN+ +Q G I LDILK++WS    ++T LLS+Q+LL  P  D P +  
Sbjct: 93  APTVKFLTPCYHPNVDTQ-GNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTH 151
Query: 126 VAQQYLKDHQTFLSTARYWTESFAK 150
            A+ + K+   F    +Y  E+++K
Sbjct: 152 AAELW-KNPTAF---KKYLQETYSK 172

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 7   VQKELQECSKDIEASG---IKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
           V K LQ+  + +  SG   I   P  DNL      + GP  T YE   ++L +  P  YP
Sbjct: 10  VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYP 69
Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           ++PP + F T  WHPN+  QSG ICLDILK+ W+ +  ++T LLS+Q+LL  P    P +
Sbjct: 70  YKPPVVKFTTPCWHPNV-DQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLN 128
Query: 124 AVVAQQY 130
           A  A  +
Sbjct: 129 AQAADMW 135

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 79/155 (50%), Gaps = 9/155 (5%)
Query: 2   IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
           I  SR+ +E +   KD    G    P  +     NL++    IPG  GTP+EGG F+L +
Sbjct: 7   IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65
Query: 57  TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
              D YP  PPK  F   ++HPN++  SG +CL IL++   W PA+T+K  LL +Q LL+
Sbjct: 66  LFKDDYPSSPPKCKFEPPLFHPNVAP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
            P   DP  A     Y ++   +    R   + FA
Sbjct: 125 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 2   IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
           I  SR+ +E +   KD    G    P  +     NL++    IPG  GTP+EGG F+L +
Sbjct: 6   IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 64
Query: 57  TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
              D YP  PPK  F   ++HPN+   SG +CL IL++   W PA+T+K  LL +Q LL+
Sbjct: 65  LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 123
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
            P   DP  A     Y ++   +    R   + FA
Sbjct: 124 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 2   IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
           I  SR+ +E +   KD    G    P  +     NL++    IPG  GTP+EGG F+L +
Sbjct: 6   IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 64
Query: 57  TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
              D YP  PPK  F   ++HPN+   SG +CL IL++   W PA+T+K  LL +Q LL+
Sbjct: 65  LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 123
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
            P   DP  A     Y ++   +    R   + FA
Sbjct: 124 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 2   IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
           I  SR+ +E +   KD    G    P  +     NL++    IPG  GTP+EGG F+L +
Sbjct: 5   IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 63
Query: 57  TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
              D YP  PPK  F   ++HPN+   SG +CL IL++   W PA+T+K  LL +Q LL+
Sbjct: 64  LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 122
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
            P   DP  A     Y ++   +    R   + FA
Sbjct: 123 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 157

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 2   IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
           I  SR+ +E +   KD    G    P  +     NL++    IPG  GTP+EGG F+L +
Sbjct: 4   IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62
Query: 57  TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
              D YP  PPK  F   ++HPN+   SG +CL IL++   W PA+T+K  LL +Q LL+
Sbjct: 63  LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
            P   DP  A     Y ++   +    R   + FA
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 2   IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
           I  SR+ +E +   KD    G    P  +     NL++    IPG  GTP+EGG F+L +
Sbjct: 7   IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65
Query: 57  TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
              D YP  PPK  F   ++HPN+   SG +CL IL++   W PA+T+K  LL +Q LL+
Sbjct: 66  LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
            P   DP  A     Y ++   +    R   + FA
Sbjct: 125 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 2   IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
           I  SR+ +E +   KD    G    P  +     NL++    IPG  GTP+EGG F+L +
Sbjct: 9   IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 67
Query: 57  TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
              D YP  PPK  F   ++HPN+   SG +CL IL++   W PA+T+K  LL +Q LL+
Sbjct: 68  LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 126
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
            P   DP  A     Y ++   +    R   + FA
Sbjct: 127 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 161

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 41  GPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPAL 100
           GP GTPYEGG +++ + LPD YPF+ P + F+ K++HPNI   SG +CLD++   W+   
Sbjct: 59  GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 101 TLKTALLS-VQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEK 159
            L     S +  LL+ P P DP +   A  YL   + +    + + + +A   +L  +E+
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEE 178

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 2   IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
           I  SR+ +E +   KD    G    P  +     NL++    IPG  GTP+EGG F+L +
Sbjct: 7   IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65
Query: 57  TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
              D YP  PPK  F   ++HPN+   SG +CL IL++   W PA+T+K  LL +Q LL+
Sbjct: 66  LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
            P    P  A     Y ++   +    R   + FA
Sbjct: 125 EPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 2   IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
           I  SR+ +E +   KD    G    P  +     NL++    IPG  GTP+EGG F+L +
Sbjct: 7   IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65
Query: 57  TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
              D YP  PPK  F   ++HP +   SG +CL IL++   W PA+T+K  LL +Q LL+
Sbjct: 66  LFKDDYPSSPPKCKFEPPLFHPQVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
            P   DP  A     Y ++   +    R   + FA
Sbjct: 125 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 41  GPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPAL 100
           GP GT YEGG +++ +TLPD YPF  P + F+ K+ HPN+   SG++CLD++   W+P  
Sbjct: 37  GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLY 96
Query: 101 TLKTAL-LSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
           +L     + +  LL+ P P DP ++  A   +KD   +    + + + +A
Sbjct: 97  SLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYA 146

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 2   IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
           I  SR+ +E +   KD    G    P  +     NL++    IPG  GTP+EGG F+L +
Sbjct: 7   IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65
Query: 57  TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
              D YP  PPK  F   ++HPN+   SG +CL IL++   W PA+T+K  LL +Q LL+
Sbjct: 66  LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
            P    P  A     Y ++   +    R   + FA
Sbjct: 125 EPNIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 2   IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
           I  SR+ +E +   KD    G    P  +     NL++    IPG  GTP+EGG F+L +
Sbjct: 4   IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62
Query: 57  TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
              D YP  PPK  F   ++HPN+   SG + L IL++   W PA+T+K  LL +Q LL+
Sbjct: 63  LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVSLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
            P   DP  A     Y ++   +    R   + FA
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 79/143 (55%), Gaps = 16/143 (11%)
Query: 7   VQKELQECSKDIEASGIKVTPVSDN-LVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           ++++L E +K+    G     + DN L     +I GP  T YEGG F+  +T P  YP  
Sbjct: 22  LRRQLAELNKN-PVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLR 80
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDIL-------------KDQWSPALTLKTALLSVQAL 112
           PPKM F+T++WHPN+  ++G +C+ IL             +++W P  T++T ++SV ++
Sbjct: 81  PPKMKFITEIWHPNV-DKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISM 139
Query: 113 LSAPAPDDPQDAVVAQQYLKDHQ 135
           L+ P  D P +   A+++ +D  
Sbjct: 140 LADPNGDSPANVDAAKEWREDRN 162

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 2   IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDI 56
           I  SR+ +E +   KD    G    P  +     NL++    IPG  GTP+EGG F+L +
Sbjct: 4   IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62
Query: 57  TLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLS 114
              D YP  PPK  F   ++HPN+   SG + L IL++   W PA+T+K  LL +Q LL+
Sbjct: 63  LFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVXLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 115 APAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
            P   DP  A     Y ++   +    R   + FA
Sbjct: 122 EPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKFA 156

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 24  KVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQ 83
           KV P SD +        GP GTPYE GT+ L + LP  YPF+ P + F  ++ HPN+  +
Sbjct: 30  KVYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDER 88
Query: 84  SGAICLDILKDQWSPALTLKTAL-LSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTAR 142
           SG++CLD++   W+P   L+    + +  LL  P P DP +   A     D   F +  R
Sbjct: 89  SGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLR 148

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 7/140 (5%)
Query: 4   FSRVQKELQECSKD----IEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
             R+Q+E ++  KD      A  +K    S +L      IPG  GT + GG + + +  P
Sbjct: 6   LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 65
Query: 60  DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLSAPA 117
           + YP +PPK+ F    +HPN+   SG ICL IL +   W PA+TLK  +L VQ LL +P 
Sbjct: 66  NEYPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPN 124
Query: 118 PDDPQDAVVAQQYLKDHQTF 137
           P+ P      + + ++   +
Sbjct: 125 PNSPAQEPAWRSFSRNKAEY 144

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 6   RVQKELQECSKD----IEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
           R+Q+E ++  KD      A  +K    S +L      IPG  GT + GG + + +  P+ 
Sbjct: 10  RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 69
Query: 62  YPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLSAPAPD 119
           YP +PPK+ F    +HPN+   SG ICL IL +   W PA+TLK  +L VQ LL +P P+
Sbjct: 70  YPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 128
Query: 120 DPQDAVVAQQYLKDHQTF 137
            P      + + ++   +
Sbjct: 129 SPAQEPAWRSFSRNKAEY 146

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 16/145 (11%)
Query: 7   VQKELQECSKDIEASGIKVTPVSDNLVH-LTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           ++K+L +  + +   G     V DN ++    ++ GP  T YEGG F+  +  P  YP +
Sbjct: 8   LKKQLADMRR-VPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQK 66
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKD-------------QWSPALTLKTALLSVQAL 112
           PPKM F++++WHPNI  + G +C+ IL D             +W P  T++T LLSV ++
Sbjct: 67  PPKMKFISEIWHPNIDKE-GNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISM 125
Query: 113 LSAPAPDDPQDAVVAQQYLKDHQTF 137
           L+ P  + P +   A+   +++  F
Sbjct: 126 LTDPNFESPANVDAAKMQRENYAEF 150

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 5   SRVQKELQECSKD----IEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           +R+Q+E ++  +D      A   K +    +L++    IPG   T +EGG ++L +  P+
Sbjct: 13  TRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPE 72
Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQ--WSPALTLKTALLSVQALLSAPAP 118
            YP  PPK  F   ++HPN+   SG +CL IL ++  W PA+T+K  LL +Q LL  P  
Sbjct: 73  EYPTRPPKCRFTPPLFHPNVYP-SGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNI 131
Query: 119 DDPQDAVVAQQYLKDHQTFLSTAR 142
             P        + KD   +    R
Sbjct: 132 ASPAQTEAYTMFKKDKVEYEKRVR 155

>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 9/150 (6%)
Query: 9   KELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPK 68
           KE+ E   ++  +  KV     N +H   +   P    Y+GG F+ +  +PD Y   PPK
Sbjct: 21  KEVAELEANLPCT-CKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPK 79
Query: 69  MHFVTKVWHPNISSQSGAICLDILKDQ------WSPALTLKTALLSVQALLSAPAP-DDP 121
           +  +TK+WHPNI +++G ICL +L++       W+P  TLK  +  + +L +     DDP
Sbjct: 80  VKCLTKIWHPNI-TETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDP 138
Query: 122 QDAVVAQQYLKDHQTFLSTARYWTESFAKT 151
            +   A+ +L+D + F +    + + +A++
Sbjct: 139 LNIEAAEHHLRDKEDFRNKVDDYIKRYARS 168

>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 69/127 (54%), Gaps = 8/127 (6%)
Query: 31  NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLD 90
           N +H   +   P    Y+GG F+ +  +PD Y   PPK+  +TK+WHPNI +++G ICL 
Sbjct: 42  NKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI-TETGEICLS 100
Query: 91  ILKDQ------WSPALTLKTALLSVQALLSAPAP-DDPQDAVVAQQYLKDHQTFLSTARY 143
           +L++       W+P  TLK  +  + +L +     DDP +   A+ +L+D + F +    
Sbjct: 101 LLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDD 160
Query: 144 WTESFAK 150
           + + +A+
Sbjct: 161 YIKRYAR 167

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 22  GIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80
           G +VT V + +L +    I GP  T YEGG F+  +  P  YP+ PP   F+TK+WHPNI
Sbjct: 26  GFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI 85
Query: 81  SSQSGAICLDIL-------------KDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVA 127
             ++G +C+ IL              ++W+P   ++T LLSV +LL+ P    P +   +
Sbjct: 86  -YETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDAS 144
Query: 128 QQYLK 132
             Y K
Sbjct: 145 VMYRK 149

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 22  GIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80
           G +VT V + +L +    I GP  T YEGG F+  +  P  YP+ PP   F+TK+WHPNI
Sbjct: 23  GFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI 82
Query: 81  SSQSGAICLDIL-------------KDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVA 127
             ++G +C+ IL              ++W+P   ++T LLSV +LL+ P    P +   +
Sbjct: 83  -YETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDAS 141
Query: 128 QQYLK 132
             Y K
Sbjct: 142 VMYRK 146

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 37  GIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFV-TKVWHPNISSQSGAICLDILK-D 94
            II GP  TPYE   FR+ I +P  YP  PPK+ F+   + H N+ S +G ICL+ILK +
Sbjct: 52  AIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPE 111
Query: 95  QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQ 128
           +W+P   L   + +V  LL  P  D P D  +  
Sbjct: 112 EWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGN 145

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 37  GIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFV-TKVWHPNISSQSGAICLDILK-D 94
            II GP  TPYE   FR+ I +P  YP  PPK+ F+   + H N+ S +G ICL+ILK +
Sbjct: 52  AIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPE 111
Query: 95  QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQ 128
           +W+P   L   + +V  LL  P  D P D  +  
Sbjct: 112 EWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGN 145

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 37  GIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFV-TKVWHPNISSQSGAICLDILK-D 94
            II GP  TPYE   FR+ I +P  YP  PPK+ F+   + H N+ S +G ICL+ILK +
Sbjct: 52  AIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPE 111
Query: 95  QWSPALTLKTALLSVQALLSAPAPDDPQDA 124
           +W+P   L   + +V  LL  P  D P D 
Sbjct: 112 EWTPVWDLLHCVHAVWRLLREPVCDSPLDV 141

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHL-TGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           R+ KELQ+  KD    GI   P S+N + +   +I GP  TPY  G F   +  P  YP 
Sbjct: 8   RLLKELQQLIKD-SPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66
Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDIL-------------KDQWSPALTLKTALLSVQA 111
            PPK+ F   + HPNI   +G +C+ IL             +++WSP  +++  LLSV +
Sbjct: 67  SPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMS 125
Query: 112 LLSAP 116
           +LS P
Sbjct: 126 MLSEP 130

>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 6   RVQKELQECS----KDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
           R+QK++ E +     DI  S        D+L++   +I    G  Y+ G F     +  G
Sbjct: 10  RIQKDINELNLPKTCDISFSD------PDDLLNFKLVICPDEGF-YKSGKFVFSFKVGQG 62
Query: 62  YPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDP 121
           YP +PPK+   T V+HPNI  + G +CL+IL++ W P LT+ + +  +Q L   P P+DP
Sbjct: 63  YPHDPPKVKCETXVYHPNIDLE-GNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDP 121
Query: 122 QDAVVAQQYLKDHQTF 137
            +   A+    + + F
Sbjct: 122 LNKEAAEVLQNNRRLF 137

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 2/133 (1%)
Query: 16  KDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKV 75
           K+    GI   PVS++++     I G   + ++G  F+L I     Y + PP + F+T  
Sbjct: 36  KENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIP 95
Query: 76  WHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKD 133
           +HPN+   +G  C+D L +  +W+   TL + LL++Q +LS P  ++P +   A+  +KD
Sbjct: 96  FHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKD 155
Query: 134 HQTFLSTARYWTE 146
              + +  R +  
Sbjct: 156 ESLYRTILRLFNR 168

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 47  YEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTAL 106
           Y  G+   ++   + YP EPPK+  + K++HPNI  + G +CL+IL++ WSPAL L++ +
Sbjct: 77  YNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLK-GNVCLNILREDWSPALDLQSII 135
Query: 107 LSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTAR 142
             +  L   P P+DP +   A+   +  + F    R
Sbjct: 136 TGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171

>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 12/136 (8%)
Query: 6   RVQKELQECS----KDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
           R+QK++ E +     DI  S        D+L++   +I    G  Y+ G F     +  G
Sbjct: 30  RIQKDINELNLPKTCDISFSD------PDDLLNFKLVICPDEGF-YKSGKFVFSFKVGQG 82
Query: 62  YPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDP 121
           YP +PPK+   T V+HPNI  + G + L+IL++ W P LT+ + +  +Q L   P P+DP
Sbjct: 83  YPHDPPKVKCETMVYHPNIDLE-GNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDP 141
Query: 122 QDAVVAQQYLKDHQTF 137
            +   A+    + + F
Sbjct: 142 LNKEAAEVLQNNRRLF 157

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 22  GIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80
           GI   P+++ N      +I GP  T +E G F   ++ P  YP  PPKM F  +++HPNI
Sbjct: 28  GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 87
Query: 81  SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVA 127
               G +C+ IL              ++WSP  +++  LLSV ++L+ P  +   +   +
Sbjct: 88  YPD-GRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 146
Query: 128 QQYLKDHQTFLSTAR 142
           + +  D + F   A+
Sbjct: 147 KMWRDDREQFYKIAK 161

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 22  GIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80
           GI   P+++ N      +I GP  T +E G F   ++ P  YP  PPKM F  +++HPNI
Sbjct: 22  GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81
Query: 81  SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVA 127
               G +C+ IL              ++WSP  +++  LLSV ++L+ P  +   +   +
Sbjct: 82  YP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 140
Query: 128 QQYLKDHQTFLSTAR 142
           + +  D + F   A+
Sbjct: 141 KMWRDDREQFYKIAK 155

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 22  GIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80
           GI   P+++ N      +I GP  T +E G F   ++ P  YP  PPKM F  +++HPNI
Sbjct: 25  GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 84
Query: 81  SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVA 127
               G +C+ IL              ++WSP  +++  LLSV ++L+ P  +   +   +
Sbjct: 85  YP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 143
Query: 128 QQYLKDHQTFLSTAR 142
           + +  D + F   A+
Sbjct: 144 KMWRDDREQFYKIAK 158

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 22  GIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI 80
           GI   P+++ N      +I GP  T +E G F   ++ P  YP  PPKM F  +++HPNI
Sbjct: 26  GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 85
Query: 81  SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVA 127
               G +C+ IL              ++WSP  +++  LLSV ++L+ P  +   +   +
Sbjct: 86  YPD-GRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 144
Query: 128 QQYLKDHQTFLSTAR 142
           + +  D + F   A+
Sbjct: 145 KMWRDDREQFYKIAK 159

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           RV KEL++  K        ++    N++    ++  P   PY    F L I+ P  YPF+
Sbjct: 8   RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFK 66
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDIL-KDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
           PP + F TK++HPN+  ++G ICL I+  + W P       L ++  L++ P   +P   
Sbjct: 67  PPMIKFTTKIYHPNV-DENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRM 125
Query: 125 VVAQQYLKDHQTFLSTARYWTESFA 149
            +A    ++ + F   A  +T  F 
Sbjct: 126 DLADLLTQNPELFRKNAEEFTLRFG 150

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           RV KEL++  K        ++    N++    ++  P   PY    F L I+ P  YPF+
Sbjct: 5   RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFK 63
Query: 66  PPKMHFVTKVWHPNISSQSGAICLDIL-KDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
           PP + F TK++HPN+  ++G ICL I+  + W P       L ++  L++ P   +P   
Sbjct: 64  PPMIKFTTKIYHPNV-DENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRM 122
Query: 125 VVAQQYLKDHQTFLSTARYWTESFA 149
            +A    ++ + F   A  +T  F 
Sbjct: 123 DLADLLTQNPELFRKNAEEFTLRFG 147

>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 19/119 (15%)
Query: 6   RVQKELQE--------CSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDIT 57
           R+QKEL          C+ D+  S I++      +V   G+      T Y    +++ I 
Sbjct: 24  RIQKELNNFLKNPPINCTIDVHPSNIRIW-----IVQYVGL----ENTIYANEVYKIKII 74
Query: 58  LPDGYPFEPPKMHFVTKV-WHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSA 115
            PD YP +PP ++F+ K   H ++ S +G ICL +L D ++P+L++   +LS+ ++LS+
Sbjct: 75  FPDNYPLKPPIVYFLQKPPKHTHVYS-NGDICLSVLGDDYNPSLSISGLILSIISMLSS 132

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
Query: 6   RVQKELQECSKDIEASGIKVT--PVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
           R+QKEL     D    G+ +    V +++      + G  GT YEG  F+L       YP
Sbjct: 26  RLQKELLALQND-PPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84
Query: 64  FEPPKMHFVTKVW--HPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLS 114
           F+ P++ F  +    HP++ S +G ICL IL + WSPAL++++  LS+ ++LS
Sbjct: 85  FDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS 136

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 6   RVQKELQE--------CSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDIT 57
           R+QKEL          C+ D+  + I++      +V   G+      T Y    ++L I 
Sbjct: 10  RIQKELHNFLNNPPINCTLDVHPNNIRIW-----IVKYVGL----ENTIYANEVYKLKII 60
Query: 58  LPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSA 115
            PD YP +PP ++F+ K         +G ICL +L D ++P+L++   +LS+ ++LS+
Sbjct: 61  FPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSS 118

>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R++++     KD     I   P+  N++    ++ GP  TPYEGG +   +  P  +PF+
Sbjct: 18  RLKQDYLRIKKD-PVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFK 76
Query: 66  PPKMHFVTKVWHPNISSQSGA-ICL---DILKDQWSPALTLKTALLSVQALLSAPAP 118
           PP ++ +T    PN   +    +CL   D   D W+PA ++ T L  + + +    P
Sbjct: 77  PPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129

>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap Repeat- Containing Protein 6 Length = 323

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 14/94 (14%)
Query: 38  IIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWH-----PNISSQSGAICLDIL 92
           +I GP  TPY  G F  D+  P  YP  PP ++  T   H     PN+ +  G +CL IL
Sbjct: 115 LITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN-DGKVCLSIL 173
Query: 93  -------KDQWSPAL-TLKTALLSVQALLSAPAP 118
                  +++W+P   +    L+SVQ+L+    P
Sbjct: 174 NTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207

>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma Cruzi Length = 167

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 49  GGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSP 98
           G T++L +   D YP EPP + FVT V+ P ++ + G IC  ++ D W+P
Sbjct: 68  GNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGE-GGICDRMVNDFWTP 116

>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN Length = 137

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 32  LVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDI 91
           +    G I GP  + +E   + L I     YP  PPK+ F++K+  P ++  +G +  D 
Sbjct: 38  MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 97
Query: 92  --LKDQWSPALTLKTALLSVQALLSAPA 117
             L+D W  A T++T LL ++  ++ PA
Sbjct: 98  HTLRD-WKRAYTMETLLLDLRKEMATPA 124

>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 138

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 32  LVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDI 91
           +    G I GP  + +E   + L I     YP  PPK+ F++K+  P ++  +G +  D 
Sbjct: 39  MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 98
Query: 92  --LKDQWSPALTLKTALLSVQALLSAPA 117
             L+D W  A T++T LL ++  ++ PA
Sbjct: 99  HTLRD-WKRAYTMETLLLDLRKEMATPA 125

>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 139

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDN----LVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
           R+ +EL+E  K +   G     + D+    L   TG+I GP  T YE   + L +     
Sbjct: 8   RLLEELEEGQKGV-GDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK 66
Query: 62  YPFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALL 113
           YP  PP + FVTK+    I++ SG +    + +L  +W  + ++K  L  ++ L+
Sbjct: 67  YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 120

>pdb|1J74|A Chain A, Crystal Structure Of Mms2 Length = 145

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDN----LVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
           R+ +EL+E  K +   G     + D+    L   TG+I GP  T YE   + L +     
Sbjct: 14  RLLEELEEGQKGV-GDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK 72
Query: 62  YPFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALL 113
           YP  PP + FVTK+    I++ SG +    + +L  +W  + ++K  L  ++ L+
Sbjct: 73  YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 126

>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease Length = 138

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDN----LVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
           R+ +EL+E  K +   G     + D+    L   TG+I GP  T YE   + L +     
Sbjct: 9   RLLEELEEGQKGV-GDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK 67
Query: 62  YPFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALL 113
           YP  PP + FVTK+    I++ SG +    + +L  +W  + ++K  L  ++ L+
Sbjct: 68  YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 121

>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSD---NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
           R+ +EL+E  K +    +      D    L   TG+I GP  T YE   + L +     Y
Sbjct: 19  RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 78
Query: 63  PFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALL 113
           P  PP + FVTK+    I++ SG +    + +L  +W  + ++K  L  ++ L+
Sbjct: 79  PEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 131

>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating Enzyme Variant Uev1a Length = 170

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDN----LVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
           R+ +EL+E  K +   G     + D+    L   TG+I GP  T YE   + L I     
Sbjct: 39  RLLEELEEGQKGV-GDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPK 97
Query: 62  YPFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALL 113
           YP  PP + FVTK+    ++S +G +    + +L  +W  + ++K  L  ++ L+
Sbjct: 98  YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 151

>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 48  EGGTF-RLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQ-WSPALTLKTA 105
           EG  F  L+ +  D +PF+PP +  V+ V         GAIC+++L  Q WS A ++++ 
Sbjct: 65  EGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESV 124
Query: 106 LLSVQALL 113
           ++ + A L
Sbjct: 125 IMQISATL 132

>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 142

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSD---NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
           R+ +EL+E  K +    +      D    L   TG+I GP  T YE   + L I     Y
Sbjct: 11  RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKY 70
Query: 63  PFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALL 113
           P  PP + FVTK+    ++S +G +    + +L  +W  + ++K  L  ++ L+
Sbjct: 71  PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 123

>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2 Variant 1 (Uev- 1) Length = 160

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSD---NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
           R+ +EL+E  K +    +      D    L   TG+I GP  T YE   + L I     Y
Sbjct: 29  RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 88
Query: 63  PFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALL 113
           P  PP + FVTK+    ++S +G +    + +L  +W  + ++K  L  ++ L+
Sbjct: 89  PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 141

>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci) Involved In Embryo Attachment And Implantation Length = 186

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 54  LDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQ-WSPALTLKTALLSVQAL 112
           L+ +  D +PF+PP +  V  V         GA+C+++L  Q WS A ++++ ++ + A 
Sbjct: 93  LNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINAT 152
Query: 113 L 113
           L
Sbjct: 153 L 153

>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 158

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTG---IIPGPVGTPYEGGTFRLDITLPDGY 62
           R+  EL+   K   + G+     S + + L+     I G  GT +E   + L I   D Y
Sbjct: 29  RLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 88
Query: 63  PFEPPKMHFVTKVWHPNISSQSGAI--CLDILKDQWSPALTLKTALLSV-QALLSAPAPD 119
           P  PP + F TK+    + +    I   L ILK+ W+   T++T L+S+ Q +LS+    
Sbjct: 89  PDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLRQEMLSSANKR 147
Query: 120 DPQ 122
            PQ
Sbjct: 148 LPQ 150

>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2, Putative, From Plasmodium Falciparum Length = 156

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 32  LVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAI--CL 89
           L + +  I G  GT +E   + L I   D YP  PP + F TK+    + +    I   L
Sbjct: 54  LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNL 113
Query: 90  DILKDQWSPALTLKTALLSV-QALLSAPAPDDPQ 122
            ILK+ W+   T++T L+S+ Q +LS+     PQ
Sbjct: 114 HILKN-WNRNYTIETILISLRQEMLSSANKRLPQ 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	2e-95
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	7e-95
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	7e-93
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	7e-88
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	4e-82
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	2e-79
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	8e-79
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	4e-78
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	4e-78
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	2e-77
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	2e-77
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	1e-76
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	2e-76
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	4e-76
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	4e-76
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	4e-76
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	5e-75
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	3e-72
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	5e-72
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	6e-70
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	2e-69
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	8e-69
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	3e-68
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	1e-67
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	2e-67
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	6e-67
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	1e-65
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	2e-65
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	4e-65
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	1e-64
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	1e-64
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	2e-64
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	4e-63
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	2e-62
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	4e-61
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	5e-59
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	1e-57
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	8e-56
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	2e-55
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	3e-55
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	2e-54
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	3e-54
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	8e-54
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	3e-53
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	9e-52
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	2e-51
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	2e-50
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	5e-49
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	3e-42
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	3e-38
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	6e-09
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	1e-07
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	3e-06
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	4e-06
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	7e-06
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	8e-06
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	5e-04

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score =  274 bits (703), Expect = 2e-95
 Identities = 97/193 (50%), Positives = 126/193 (65%), Gaps = 4/193 (2%)

Query: 6   RVQKELQECSKDIEA--SGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
           R+++E +E  K  E   + IKV  V +N   L G I GP  TPYEGG ++L+I +P+ YP
Sbjct: 9   RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 68

Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PDDPQD
Sbjct: 69  FNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQD 128

Query: 124 AVVAQQYLKDHQTFLSTARYWTESFAK--TSSLGVEEKVQKLVEMGFPESQVRSTLEIVG 181
           AVVA QY ++ + F  TAR W   +A    SS    +K++ L  MGF  + V   L    
Sbjct: 129 AVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKS 188

Query: 182 GDENMALEKLLSS 194
            D   A E LLS+
Sbjct: 189 WDVETATELLLSN 201

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  274 bits (702), Expect = 7e-95
 Identities = 97/190 (51%), Positives = 127/190 (66%), Gaps = 2/190 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+QKEL++   +     I       N     G I GP GTPYEGG F L IT+P+ YP+ 
Sbjct: 27  RLQKELKDIENE-NVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYN 85

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ FVTK+WHPNISSQ+GAICLD+LK++WSPALT++TALLS+QALLS P PDDPQDA 
Sbjct: 86  PPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAE 145

Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTSSL-GVEEKVQKLVEMGFPESQVRSTLEIVGGDE 184
           VA+ Y ++H  F+ TA  WT++FA        E  ++K+ EMGF E Q ++ L     +E
Sbjct: 146 VAKMYKENHALFVKTASVWTKTFATGPKEEPREVIIKKITEMGFSEDQAKNALIKANWNE 205

Query: 185 NMALEKLLSS 194
            +AL  LL +
Sbjct: 206 TLALNTLLEN 215

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score =  270 bits (692), Expect = 7e-93
 Identities = 96/194 (49%), Positives = 125/194 (64%), Gaps = 4/194 (2%)

Query: 5   SRVQKELQECSKDIEA--SGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
            R+++E +E  K  E   + IKV  V +N   L G I GP  TPYEGG ++L+I +P+ Y
Sbjct: 60  QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 119

Query: 63  PFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQ 122
           PF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PDDPQ
Sbjct: 120 PFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQ 179

Query: 123 DAVVAQQYLKDHQTFLSTARYWTESFAK--TSSLGVEEKVQKLVEMGFPESQVRSTLEIV 180
           DAVVA QY ++ + F  TAR W   +A    SS    +K++ L   GF  + V   L   
Sbjct: 180 DAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAAGFDRNAVIVALSSK 239

Query: 181 GGDENMALEKLLSS 194
             D   A E LLS+
Sbjct: 240 SWDVETATELLLSN 253

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score =  256 bits (655), Expect = 7e-88
 Identities = 92/210 (43%), Positives = 127/210 (60%), Gaps = 24/210 (11%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           R+ KE+Q    D  A+ I +  VS+ ++ HL G   GP GTPYEGG F +DI +P  YPF
Sbjct: 6   RIMKEIQAVKDD-PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
           +PPKM F TKV+HPNISS +GAICLDIL++ WSP +TLK+AL+S+QALL +P P+DPQDA
Sbjct: 65  KPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDA 124

Query: 125 VVAQQYLKDHQTFLSTARYWTESFAKTSSLGVE-------------EKVQKLVEMGFPES 171
            VAQ YL+D ++F  TA  WT  +A  +S G +             + + +    GF + 
Sbjct: 125 EVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNVEESDLYGIDHDLIDEFESQGFEKD 184

Query: 172 QVRSTLEIVG---------GDENMALEKLL 192
           ++   L  +G            N  +E+LL
Sbjct: 185 KIVEVLRRLGVKSLDPNDNNTANRIIEELL 214

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score =  239 bits (612), Expect = 4e-82
 Identities = 82/147 (55%), Positives = 106/147 (72%), Gaps = 2/147 (1%)

Query: 6   RVQKELQECSKDIEA--SGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
           R+++E +E  K  E   + IKV  V +N   L G I GP  TPYEGG ++L+I +P+ YP
Sbjct: 12  RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 71

Query: 64  FEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           F PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PDDPQD
Sbjct: 72  FNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQD 131

Query: 124 AVVAQQYLKDHQTFLSTARYWTESFAK 150
           AVVA QY ++ + F  TAR W   +A 
Sbjct: 132 AVVANQYKQNPEMFKQTARLWAHVYAG 158

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score =  232 bits (595), Expect = 2e-79
 Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 2/147 (1%)

Query: 5   SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           + + ++  + +K I  +G  +   + +      +  GP GT YEGG +++ +TLPD YPF
Sbjct: 2   TSLTRKQCDFTKLIM-AGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPF 60

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTAL-LSVQALLSAPAPDDPQD 123
             P + F+ K+ HPN+   SG++CLD++   W+P  +L     + +  LL+ P P DP +
Sbjct: 61  ASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLN 120

Query: 124 AVVAQQYLKDHQTFLSTARYWTESFAK 150
           +  A   +KD   +    + + + +A 
Sbjct: 121 SDAASLLMKDKNIYEEKVKEYVKLYAS 147

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score =  230 bits (590), Expect = 8e-79
 Identities = 73/147 (49%), Positives = 99/147 (67%), Gaps = 2/147 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KE Q  + +    GI   PV +N  H   +I GP GTPYEGGT++L++ LP+ YP E
Sbjct: 5   RITKETQNLANE-PPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F+TK++HPNI    G ICLDILKD+WSPAL ++T LLS+QALLS+P PDDP D+ 
Sbjct: 64  PPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSK 122

Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTS 152
           VA+ + +D       AR W + +A  +
Sbjct: 123 VAEHFKQDKNDAEHVARQWNKIYANNN 149

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score =  230 bits (589), Expect = 4e-78
 Identities = 83/157 (52%), Positives = 107/157 (68%), Gaps = 12/157 (7%)

Query: 6   RVQKELQECSKDIEA------------SGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFR 53
           R+ KEL +  +   A             G+    V  ++    G I GP+GTPYEGG F 
Sbjct: 36  RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFT 95

Query: 54  LDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALL 113
           LDI +P  YP+ PPKM FVTK+WHPNISSQ+GAICLDILK +WSPALT++TALLS+QA+L
Sbjct: 96  LDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAML 155

Query: 114 SAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK 150
           + P P DPQDA VA+  +++H  F+ TA+ WTE+FAK
Sbjct: 156 ADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAK 192

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score =  229 bits (585), Expect = 4e-78
 Identities = 83/145 (57%), Positives = 106/145 (73%), Gaps = 2/145 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           R+ KE+Q    D  A+ I +  VS+ ++ HL G   GP GTPYEGG F +DI +P  YPF
Sbjct: 5   RIMKEIQAVKDD-PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
           +PPKM F TKV+HPNISS +GAICLDILK+ WSP +TLK+AL+S+QALL +P P+DPQDA
Sbjct: 64  KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA 123

Query: 125 VVAQQYLKDHQTFLSTARYWTESFA 149
            VAQ YL+D ++F  TA  WT  +A
Sbjct: 124 EVAQHYLRDRESFNKTAALWTRLYA 148

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score =  227 bits (581), Expect = 2e-77
 Identities = 68/145 (46%), Positives = 93/145 (64%), Gaps = 2/145 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KE ++   D    GI   P  DNL +    I GP  +PYE G F L++ LPD YP E
Sbjct: 9   RIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            PK+ F+TK++HPNI    G ICLD+LK  WSPAL ++T LLS+QALL++P P+DP    
Sbjct: 68  APKVRFLTKIYHPNIDR-LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 126

Query: 126 VAQQYLKDHQTFLSTARYWTESFAK 150
           VA+ ++K+ Q   + AR WT+ +AK
Sbjct: 127 VAEDWIKNEQGAKAKAREWTKLYAK 151

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  227 bits (581), Expect = 2e-77
 Identities = 69/147 (46%), Positives = 94/147 (63%), Gaps = 2/147 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KE Q    +    GIK  P   N  +   +I GP  +P+EGGTF+L++ LP+ YP  
Sbjct: 9   RIIKETQRLLAE-PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            PK+ F+TK++HPN+    G ICLDILKD+WSPAL ++T LLS+QALLSAP PDDP    
Sbjct: 68  APKVRFMTKIYHPNVDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 126

Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTS 152
           VA+Q+  +    + TAR WT  +A  +
Sbjct: 127 VAEQWKTNEAQAIETARAWTRLYAMNN 153

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  225 bits (576), Expect = 1e-76
 Identities = 68/144 (47%), Positives = 92/144 (63%), Gaps = 2/144 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+QKELQ+  +D   +     PV D+L H    I GP  +PY+GG F L I  P  YPF+
Sbjct: 8   RIQKELQDLGRD-PPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 66

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F T+++HPNI+S  G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP    
Sbjct: 67  PPKVAFTTRIYHPNINSN-GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 125

Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A+ Y  D + +   AR WT+ +A
Sbjct: 126 IARIYKTDRERYNQLAREWTQKYA 149

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  225 bits (575), Expect = 2e-76
 Identities = 64/164 (39%), Positives = 94/164 (57%), Gaps = 6/164 (3%)

Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           M   SR+++EL   + +    GI      D +  L   I G   TPYE G F+L++ +P+
Sbjct: 3   MQRASRLKRELHMLATE-PPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE 61

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDIL----KDQWSPALTLKTALLSVQALLSAP 116
            YPFEPP++ F+T ++HPNI S +G ICLD+L    K  W P+L + T L S+Q L+S P
Sbjct: 62  RYPFEPPQIRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEP 120

Query: 117 APDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKV 160
            PDDP  A ++ ++  +   FL  AR WTE  A+      EE++
Sbjct: 121 NPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEM 164

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  224 bits (574), Expect = 4e-76
 Identities = 72/144 (50%), Positives = 94/144 (65%), Gaps = 2/144 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KEL + SKD   +     PV D++ H    I GP  +PY GG F L+I  P  YPF+
Sbjct: 25  RINKELNDLSKD-PPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFK 83

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK++F TK++HPNI+SQ GAICLDILKDQWSPALT+   LLS+ +LL+ P PDDP    
Sbjct: 84  PPKVNFTTKIYHPNINSQ-GAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPE 142

Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A  Y  D   +  TAR W++ +A
Sbjct: 143 IAHLYKSDRMRYDQTAREWSQKYA 166

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  224 bits (574), Expect = 4e-76
 Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KEL + ++D   +     PV D++ H    I GP  +PY+GG F L I  P  YPF+
Sbjct: 23  RIHKELNDLARD-PPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F T+++HPNI+S  G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP    
Sbjct: 82  PPKVAFTTRIYHPNINSN-GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 140

Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A+ Y  D + +   AR WT+ +A
Sbjct: 141 IARIYKTDREKYNRIAREWTQKYA 164

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  224 bits (573), Expect = 4e-76
 Identities = 51/144 (35%), Positives = 83/144 (57%), Gaps = 2/144 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
            V KE+   + D    GIKV P  ++L  L   I GP GTPY GG FR+ + L   +P  
Sbjct: 17  LVYKEVTTLTAD-PPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK +F+TK++HPN+ + +G IC+++LK  W+  L ++  LL+++ LL  P P+   +  
Sbjct: 76  PPKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEE 134

Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
             +  L++++ + + AR  TE   
Sbjct: 135 AGRLLLENYEEYAARARLLTEIHG 158

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score =  223 bits (569), Expect = 5e-75
 Identities = 66/144 (45%), Positives = 86/144 (59%), Gaps = 2/144 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+QKEL + + D         P  DN+      I GP G+ YEGG F LDIT    YPF+
Sbjct: 52  RIQKELADITLD-PPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFK 110

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F T+++H NI+SQ G ICLDILKD WSPALT+   LLS+ +LL+   P DP    
Sbjct: 111 PPKVTFRTRIYHCNINSQ-GVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGS 169

Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A QY+ +       AR WT+ +A
Sbjct: 170 IATQYMTNRAEHDRMARQWTKRYA 193

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score =  215 bits (549), Expect = 3e-72
 Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 6/155 (3%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+  ++ +  +           +   L        GP GTPYEGG +++ + LPD YPF+
Sbjct: 29  RMDTDVIKLIESKHEV-----TILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFK 83

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLS-VQALLSAPAPDDPQDA 124
            P + F+ K++HPNI   SG +CLD++   W+    L     S +  LL+ P P DP + 
Sbjct: 84  SPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNG 143

Query: 125 VVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEK 159
             A  YL   + +    + + + +A   +L  +E+
Sbjct: 144 DAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEE 178

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score =  214 bits (547), Expect = 5e-72
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 3/147 (2%)

Query: 5   SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
              ++   +  +    S  KV P SD +        GP GTPYE GT+ L + LP  YPF
Sbjct: 12  RSNRRREMDYMRLCN-STRKVYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPF 69

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTAL-LSVQALLSAPAPDDPQD 123
           + P + F  ++ HPN+  +SG++CLD++   W+P   L+    + +  LL  P P DP +
Sbjct: 70  KSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLN 129

Query: 124 AVVAQQYLKDHQTFLSTARYWTESFAK 150
              A     D   F +  R    + A 
Sbjct: 130 VQAAHLLHADRVGFDALLREHVSTHAT 156

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  208 bits (532), Expect = 6e-70
 Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+Q+EL+         GI   P  DNL      + GP  T YE   ++L +  P  YP++
Sbjct: 13  RLQQELRTLLMS-GDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYK 71

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PP + F T  WHPN+    G ICLDILK+ W+ +  ++T LLS+Q+LL  P    P +A 
Sbjct: 72  PPVVKFTTPCWHPNVDQS-GNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQ 130

Query: 126 VAQQYLKDHQTFLSTARYWTESFAK 150
            A  +  +   +        ++   
Sbjct: 131 AADMW-SNQTEYKKVLHEKYKTAQS 154

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score =  207 bits (529), Expect = 2e-69
 Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 5/152 (3%)

Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLP 59
           M    R+ KEL+E  K       +   V + NL+   G+I  P   PY+ G FR++I  P
Sbjct: 1   MAASRRLMKELEEIRKC-GMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFP 58

Query: 60  DGYPFEPPKMHFVTKVWHPNISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAP 118
             YPF+PPK+ F TK++HPNI    G +CL ++  + W PA      + S+ AL++ P P
Sbjct: 59  AEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQP 117

Query: 119 DDPQDAVVAQQYLKDHQTFLSTARYWTESFAK 150
           + P  A +A++Y KD + F   A  +T+ + +
Sbjct: 118 EHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  206 bits (526), Expect = 8e-69
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 9/152 (5%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
            + KE+ E   +      KV     N +H   +   P    Y+GG F+ +  +PD Y   
Sbjct: 18  LLVKEVAELEAN-LPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMV 76

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQ------WSPALTLKTALLSVQALLS-APAP 118
           PPK+  +TK+WHPNI+   G ICL +L++       W+P  TLK  +  + +L +     
Sbjct: 77  PPKVKCLTKIWHPNITET-GEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNF 135

Query: 119 DDPQDAVVAQQYLKDHQTFLSTARYWTESFAK 150
           DDP +   A+ +L+D + F +    + + +A+
Sbjct: 136 DDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score =  204 bits (522), Expect = 3e-68
 Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 14/159 (8%)

Query: 6   RVQKELQECSKDIEASGIKVTPVS-----------DNLVHLTGIIPGPVGTPYEGGTFRL 54
           R+ KE +   K + +      P              +L     II GP  TPYE   FR+
Sbjct: 10  RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69

Query: 55  DITLPDGYPFEPPKMHFV-TKVWHPNISSQSGAICLDILK-DQWSPALTLKTALLSVQAL 112
            I +P  YP  PPK+ F+   + H N+ S +G ICL+ILK ++W+P   L   + +V  L
Sbjct: 70  LIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRL 129

Query: 113 LSAPAPDDPQDAVVAQQY-LKDHQTFLSTARYWTESFAK 150
           L  P  D P D  +       D   +    +Y+     +
Sbjct: 130 LREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAERER 168

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  203 bits (518), Expect = 1e-67
 Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 3/142 (2%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
            + ++  +  ++    GI   PVS++++     I G   + ++G  F+L I     Y + 
Sbjct: 27  LLHRDFCDLKEN-NYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYA 85

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILK--DQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           PP + F+T  +HPN+   +G  C+D L   ++W+   TL + LL++Q +LS P  ++P +
Sbjct: 86  PPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVN 145

Query: 124 AVVAQQYLKDHQTFLSTARYWT 145
              A+  +KD   + +  R + 
Sbjct: 146 LEAARILVKDESLYRTILRLFN 167

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  203 bits (518), Expect = 2e-67
 Identities = 52/146 (35%), Positives = 75/146 (51%), Gaps = 3/146 (2%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+Q+EL          GI   P SDNL    G I G  GT YE   ++L +  P GYP+ 
Sbjct: 34  RLQQELMTLMMS-GDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            P + F+T  +HPN+ +Q G I LDILK++WS    ++T LLS+Q+LL  P  D P +  
Sbjct: 93  APTVKFLTPCYHPNVDTQ-GNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTH 151

Query: 126 VAQQYLKDHQTFLSTARYWTESFAKT 151
            A+ + K+   F    +        +
Sbjct: 152 AAELW-KNPTAFKKYLQETYSKQVTS 176

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  200 bits (512), Expect = 6e-67
 Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 5/147 (3%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           RV KEL++  K      ++     D N++    ++  P   PY    F L I+ P  YPF
Sbjct: 8   RVVKELEDLQKK-PPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPF 65

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDIL-KDQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           +PP + F TK++HPN+   +G ICL I+  + W P       L ++  L++ P   +P  
Sbjct: 66  KPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLR 124

Query: 124 AVVAQQYLKDHQTFLSTARYWTESFAK 150
             +A    ++ + F   A  +T  F  
Sbjct: 125 MDLADLLTQNPELFRKNAEEFTLRFGV 151

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score =  198 bits (505), Expect = 1e-65
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 6   RVQKELQECSKDIEASGIKVT-PVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           R+QK++ E +         ++    D+L++   +I  P    Y+ G F     +  GYP 
Sbjct: 10  RIQKDINELNLP---KTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPH 65

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
           +PPK+   T V+HPNI  + G +CL+IL++ W P LT+ + +  +Q L   P P+DP + 
Sbjct: 66  DPPKVKCETMVYHPNIDLE-GNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNK 124

Query: 125 VVAQQYLKDHQTFLSTARYWTE 146
             A+    + + F    +    
Sbjct: 125 EAAEVLQNNRRLFEQNVQRSMR 146

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  205 bits (523), Expect = 2e-65
 Identities = 66/173 (38%), Positives = 97/173 (56%), Gaps = 2/173 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KEL + ++D   +     PV D++ H    I GP  +PY+GG F L I  P  YPF+
Sbjct: 7   RIHKELNDLARD-PPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F T+++HPNI+S  G+I LDIL+ QWSPALT+   LLS+ +LL  P PDDP    
Sbjct: 66  PPKVAFTTRIYHPNINSN-GSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124

Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLE 178
           +A+ Y  D + +   AR WT+ +A   S   E  + +   +    +     + 
Sbjct: 125 IARIYKTDREKYNRIAREWTQKYAMGGSAYDEAIMAQQDRIQQEIAVQNPLVS 177

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  196 bits (500), Expect = 4e-65
 Identities = 49/144 (34%), Positives = 84/144 (58%), Gaps = 2/144 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ ++ +   +D   +GI   P  +N++    +I GP  TP++GGTF+L +   + YP +
Sbjct: 8   RLMRDFKRLQQD-PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PP + FV++++HPNI +  G+ICLDIL++QWSP   +   L S+Q+LL  P P+ P ++ 
Sbjct: 67  PPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSE 125

Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
            A+ Y +  + +    R   E   
Sbjct: 126 AARMYSESKREYNRRVRDVVEQSW 149

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  195 bits (498), Expect = 1e-64
 Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 9/152 (5%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           R+Q+E ++  KD    G    PV       +L      IPG  GT + GG + + +  P+
Sbjct: 8   RLQEERKKWRKD-HPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLSAPAP 118
            YP +PPK+ F    +HPN+   SG ICL IL +   W PA+TLK  +L VQ LL +P P
Sbjct: 67  EYPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNP 125

Query: 119 DDPQDAVVAQQYLKDHQTFLSTARYWTESFAK 150
           + P      + + ++   +        + ++K
Sbjct: 126 NSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score =  196 bits (500), Expect = 1e-64
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 6/148 (4%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNL----VHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
           R++++L           + V    D+          +I  P    Y  G+   ++   + 
Sbjct: 33  RLKRDLDSLDLP-PTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEV 91

Query: 62  YPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDP 121
           YP EPPK+  + K++HPNI  + G +CL+IL++ WSPAL L++ +  +  L   P P+DP
Sbjct: 92  YPIEPPKVVCLKKIFHPNIDLK-GNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDP 150

Query: 122 QDAVVAQQYLKDHQTFLSTARYWTESFA 149
            +   A+   +  + F    R      +
Sbjct: 151 LNKDAAKLLCEGEKEFAEAVRLTMSGGS 178

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score =  195 bits (498), Expect = 2e-64
 Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 4/141 (2%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+QK++ E +   +   I      D+L++   +I  P    Y+ G F     +  GYP +
Sbjct: 30  RIQKDINELNLP-KTCDISF-SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHD 86

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+   T V+HPNI  + G + L+IL++ W P LT+ + +  +Q L   P P+DP +  
Sbjct: 87  PPKVKCETMVYHPNIDLE-GNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKE 145

Query: 126 VAQQYLKDHQTFLSTARYWTE 146
            A+    + + F    +    
Sbjct: 146 AAEVLQNNRRLFEQNVQRSMR 166

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  191 bits (488), Expect = 4e-63
 Identities = 44/157 (28%), Positives = 84/157 (53%), Gaps = 2/157 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ ++ +   +D    G+  +P+ DN++    +I GP  TPYE GTFRL +   + YP +
Sbjct: 8   RLMRDFKRMKED-APPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PP + F+++++HPN+ + +G ICLDIL+++W+P   + + L S+Q+L + P P  P +  
Sbjct: 67  PPHVKFLSEMFHPNVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVE 125

Query: 126 VAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQK 162
            A  +      ++   +   E   +      ++    
Sbjct: 126 AATLFKDHKSQYVKRVKETVEKSWEDDMDDDDDDDDD 162

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  189 bits (481), Expect = 2e-62
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 4/129 (3%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD---NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
           R+ +EL++  K                  +    G I GP  + +E   + L I     Y
Sbjct: 10  RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 69

Query: 63  PFEPPKMHFVTKVWHPNISSQSGAICLDILKD-QWSPALTLKTALLSVQALLSAPAPDDP 121
           P  PPK+ F++K+  P ++  +G +  D      W  A T++T LL ++  ++ PA    
Sbjct: 70  PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKL 129

Query: 122 QDAVVAQQY 130
           +     + +
Sbjct: 130 RQPKEGETF 138

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  186 bits (474), Expect = 4e-61
 Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 9/153 (5%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           R+ +E +   KD    G    P  +     NL++    IPG  GTP+EGG F+L +   D
Sbjct: 11  RLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKD 69

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLSAPAP 118
            YP  PPK  F   ++HPN+   SG +CL IL++   W PA+T+K  LL +Q LL+ P  
Sbjct: 70  DYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNI 128

Query: 119 DDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT 151
             P  A     Y ++   +    R   + FA +
Sbjct: 129 QSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 161

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  181 bits (461), Expect = 5e-59
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 7/151 (4%)

Query: 5   SRVQKELQECSKD----IEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           +R+Q+E ++  +D      A   K +    +L++    IPG   T +EGG ++L +  P+
Sbjct: 13  TRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPE 72

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQ--WSPALTLKTALLSVQALLSAPAP 118
            YP  PPK  F   ++HPN+   SG +CL IL ++  W PA+T+K  LL +Q LL  P  
Sbjct: 73  EYPTRPPKCRFTPPLFHPNVYP-SGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNI 131

Query: 119 DDPQDAVVAQQYLKDHQTFLSTARYWTESFA 149
             P        + KD   +    R      A
Sbjct: 132 ASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score =  178 bits (452), Expect = 1e-57
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 17/153 (11%)

Query: 6   RVQKELQECSKDIEAS-----------GIKVTPVSDNLVHLTGIIPGPVGTPY--EGGTF 52
           R+ K+L+   ++++A+               +  +D + +    +  P  + Y   G T+
Sbjct: 12  RIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTY 71

Query: 53  RLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQAL 112
           +L +   D YP EPP + FVT V+ P ++ + G IC  ++ D W+P       +  V   
Sbjct: 72  QLSVLFSDDYPHEPPTVRFVTPVYSPLVTGE-GGICDRMVNDFWTPDQHASDVIKLVLDR 130

Query: 113 LSA---PAPDDPQDAVVAQQYLKDHQTFLSTAR 142
           + +      DD  +        K  Q F +  R
Sbjct: 131 VFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  172 bits (439), Expect = 8e-56
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 9/132 (6%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD----NLVHLTGIIPGPVGTPYEGGTFRLDITLPDG 61
           R+ +EL+E  K +   G     + D     L   TG+I GP  T YE   + L I     
Sbjct: 29  RLLEELEEGQKGVG-DGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPK 87

Query: 62  YPFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALLSAPAP 118
           YP  PP + FVTK+    ++S +G +    + +L  +W  + ++K  L  ++ L+ +   
Sbjct: 88  YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKEN 146

Query: 119 DDPQDAVVAQQY 130
                    Q Y
Sbjct: 147 MKLPQPPEGQCY 158

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  170 bits (433), Expect = 2e-55
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 3/116 (2%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+QKEL     +       +    +N+        G   T Y    ++L I  PD YP +
Sbjct: 10  RIQKELHNFLNN-PPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLK 68

Query: 66  PPKMHFVTK-VWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD 120
           PP ++F+ K   H ++ S +G ICL +L D ++P+L++   +LS+ ++LS+     
Sbjct: 69  PPIVYFLQKPPKHTHVYS-NGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  171 bits (436), Expect = 3e-55
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 16/155 (10%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           R+  E ++ + +    GI   P+++ N      +I GP  T +E G F   ++ P  YP 
Sbjct: 7   RLMAEYKQLTLN-PPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILK-------------DQWSPALTLKTALLSVQA 111
            PPKM F  +++HPNI    G +C+ IL              ++WSP  +++  LLSV +
Sbjct: 66  SPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVS 124

Query: 112 LLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTE 146
           +L+ P  +   +   ++ +  D + F   A+   +
Sbjct: 125 MLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQ 159

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score =  169 bits (431), Expect = 2e-54
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 7/131 (5%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD---NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
           R+ +EL+E  K +    +      D    L   TG+I GP  T YE   + L I     Y
Sbjct: 39  RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 98

Query: 63  PFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
           P  PP + FVTK+    ++S +G +    + +L  +W  + ++K  L  ++ L+ +    
Sbjct: 99  PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENM 157

Query: 120 DPQDAVVAQQY 130
                   Q Y
Sbjct: 158 KLPQPPEGQCY 168

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  168 bits (427), Expect = 3e-54
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+QKEL    K+       +     N+        G   T Y    +++ I  PD YP +
Sbjct: 24  RIQKELNNFLKN-PPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLK 82

Query: 66  PPKMHFVTK-VWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAP 118
           PP ++F+ K   H ++ S +G ICL +L D ++P+L++   +LS+ ++LS+   
Sbjct: 83  PPIVYFLQKPPKHTHVYS-NGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  168 bits (428), Expect = 8e-54
 Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 21/178 (11%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
            +  EL+   ++    G +VT V + +L +    I GP  T YEGG F+  +  P  YP+
Sbjct: 11  ALLLELKGLQEE-PVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDIL-------------KDQWSPALTLKTALLSVQA 111
            PP   F+TK+WHPNI   +G +C+ IL              ++W+P   ++T LLSV +
Sbjct: 70  SPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVIS 128

Query: 112 LLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFP 169
           LL+ P    P +   +  Y K  ++     R +T+   K     V          G  
Sbjct: 129 LLNEPNTFSPANVDASVMYRKWKESK-GKDREYTDIIRKQ----VLGTKVDAERDGVK 181

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  166 bits (423), Expect = 3e-53
 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 16/155 (10%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           R+ KELQ+  KD    GI   P S+ N+     +I GP  TPY  G F   +  P  YP 
Sbjct: 8   RLLKELQQLIKD-SPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDIL-------------KDQWSPALTLKTALLSVQA 111
            PPK+ F   + HPNI   +G +C+ IL             +++WSP  +++  LLSV +
Sbjct: 67  SPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMS 125

Query: 112 LLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTE 146
           +LS P  +   +      +  +   F    +    
Sbjct: 126 MLSEPNIESGANIDACILWRDNRPEFERQVKLSIL 160

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  163 bits (414), Expect = 9e-52
 Identities = 45/144 (31%), Positives = 78/144 (54%), Gaps = 16/144 (11%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
            ++++L E +K+    G     + D +L     +I GP  T YEGG F+  +T P  YP 
Sbjct: 21  LLRRQLAELNKN-PVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPL 79

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDIL-------------KDQWSPALTLKTALLSVQA 111
            PPKM F+T++WHPN+   +G +C+ IL             +++W P  T++T ++SV +
Sbjct: 80  RPPKMKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVIS 138

Query: 112 LLSAPAPDDPQDAVVAQQYLKDHQ 135
           +L+ P  D P +   A+++ +D  
Sbjct: 139 MLADPNGDSPANVDAAKEWREDRN 162

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score =  160 bits (408), Expect = 2e-51
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 6/113 (5%)

Query: 6   RVQKELQECSKDIEASGIKVTPVS--DNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYP 63
           R+QKEL     D    G+ +   S  +++      + G  GT YEG  F+L       YP
Sbjct: 26  RLQKELLALQND-PPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84

Query: 64  FEPPKMHFVTK--VWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLS 114
           F+ P++ F  +    HP++ S +G ICL IL + WSPAL++++  LS+ ++LS
Sbjct: 85  FDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS 136

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  159 bits (403), Expect = 2e-50
 Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 10/135 (7%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD---NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
           R+  EL+   K   + G+     S     L + +  I G  GT +E   + L I   D Y
Sbjct: 25  RLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 84

Query: 63  PFEPPKMHFVTKVWHPNISSQSGAIC---LDILKDQWSPALTLKTALLSV-QALLSAPAP 118
           P  PP + F TK+    + +  G +    L ILK+ W+   T++T L+S+ Q +LS+   
Sbjct: 85  PDSPPTVKFDTKIEMSCVDN-CGRVIKNNLHILKN-WNRNYTIETILISLRQEMLSSANK 142

Query: 119 DDPQDAVVAQQYLKD 133
             PQ     + Y  +
Sbjct: 143 RLPQPN-EGEVYSNN 156

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score =  156 bits (397), Expect = 5e-49
 Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 8/170 (4%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R++++     KD     I   P+  N++    ++ GP  TPYEGG +   +  P  +PF+
Sbjct: 18  RLKQDYLRIKKD-PVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFK 76

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDP---Q 122
           PP ++ +T       +++      D   D W+PA ++ T L  + + +    P       
Sbjct: 77  PPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIET 136

Query: 123 DAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQ 172
                +Q       F    + + E F +     VEE  QK        S+
Sbjct: 137 SDFTKRQLAVQSLAFNLKDKVFCELFPEV----VEEIKQKQKAQDELSSR 182

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score =  139 bits (352), Expect = 3e-42
 Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 16/154 (10%)

Query: 6   RVQKELQECSKD--IEASGIKVTPVSDNLVHLTGIIPG-PVGTPYEGG-----------T 51
           R+ KEL++  +    +     V  ++D+L      +      +P                
Sbjct: 31  RLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEY 90

Query: 52  FRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQ-WSPALTLKTALLSVQ 110
             L+ +  D +PF+PP +  V  V         GA+C+++L  Q WS A ++++ ++ + 
Sbjct: 91  ILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQIN 150

Query: 111 ALLSAPAPDDPQDAVVAQ-QYLKDHQTFLSTARY 143
           A L          A   Q    +  Q++ S  + 
Sbjct: 151 ATLVKGKARVQFGANKNQYNLARAQQSYNSIVQI 184

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score =  133 bits (335), Expect = 3e-38
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 21/164 (12%)

Query: 6   RVQKELQECSKDI---EASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
           R+ +E    S  +    +S + V    + L  +  +I GP  TPY  G F  D+  P  Y
Sbjct: 80  RLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDY 139

Query: 63  PFEPPKMHFVTKVWH-----PNISSQSGAICLDILK-------DQWSPAL-TLKTALLSV 109
           P  PP ++  T   H     PN+ +  G +CL IL        ++W+P   +    L+SV
Sbjct: 140 PSSPPLVNLETTGGHSVRFNPNLYN-DGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSV 198

Query: 110 QALLSAPAP--DDP--QDAVVAQQYLKDHQTFLSTARYWTESFA 149
           Q+L+    P  ++P  + +       +  + +    R  T  +A
Sbjct: 199 QSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWA 242

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146

 Score = 51.5 bits (123), Expect = 6e-09
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 14/98 (14%)

Query: 29  SDNLVHLTGIIPGPVGTPYEGGTFR--LDITLPDGYPFEPPKMHFVT------KVWHPNI 80
           S  L++LTG IP     PY G T+   + + L D YP+ PP            K    ++
Sbjct: 50  SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKT-GKHV 104

Query: 81  SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAP 118
            + +G I L  L +   P   L   +  +  +     P
Sbjct: 105 DA-NGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPP 141

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Length = 73

 Score = 46.4 bits (109), Expect = 1e-07
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS 194
           EE++QKLV MGF  +QV   L     D  +A+E L+S 
Sbjct: 30  EEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQ 67

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193
           E+ V  +V MGF   Q    L         A++ + S
Sbjct: 10  EDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS 46

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A Length = 108

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 113 LSAPAPDDPQDAVVAQQYLKDHQTFLSTARYW-----TESFAKTSSLGVEEKVQKLVEMG 167
           L      +  DA  A++  K +         W     T++F  T     + ++Q+L +MG
Sbjct: 18  LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSQWQPQLQQLRDMG 77

Query: 168 FPESQV-RSTLEIVGGDENMALEKLLSS 194
             + ++    L+  GGD   ALE + + 
Sbjct: 78  IQDDELSLRALQATGGDIQAALELIFAG 105

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Length = 73

 Score = 41.4 bits (97), Expect = 7e-06
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193
           +  V  L+  GF E   R  L+  GGD   A + + +
Sbjct: 30  QSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN 66

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Length = 118

 Score = 42.3 bits (99), Expect = 8e-06
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 146 ESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS 194
              ++   +   + + K  EMGF    ++  L +   D++ ALE L++ 
Sbjct: 66  HQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A* Length = 162

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 21/103 (20%)

Query: 29  SDNLVHLTGIIPGPVGTPYEGGT---FRLDITLPDGYPFEPPKMHFVTKVW--------- 76
              L+ + G I     T  +G +     + + +P  YP +PP +    + +         
Sbjct: 61  PQLLLSIYGTIS----TGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSL 116

Query: 77  --HPNISSQSGAICLDILKDQWS-PALTLKTALLSVQALLSAP 116
                I S +G I L IL   W   A+ L   +  + +LL  P
Sbjct: 117 PIQEYIDS-NGWIALPIL-HAWDPAAMNLIMVVQELMSLLHEP 157

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	100.0
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.93
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.8
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.7
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.48
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	99.36
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	98.69
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	98.67
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	98.58
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	98.54
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	98.54
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	98.52
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	98.49
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	98.42
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	98.4
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	98.39
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	98.34
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	98.33
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	98.32
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	98.32
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	98.28
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	98.26
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	98.2
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	98.16
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	98.14
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	98.08
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	98.08
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	98.05
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	98.02
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	97.92
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	97.89
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	97.89
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	97.79
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	97.78
2dna_A	67	Unnamed protein product; ubiquitin associated doma	97.67
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	97.66
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	97.63
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	97.54
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	97.42
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	97.33
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	97.31
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	97.26
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	96.54
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	96.39
2cos_A	54	Serine/threonine protein kinase LATS2; UBA domain,	94.77
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	94.72
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	94.67
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	94.59
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	93.83
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	93.5
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	93.48
3e21_A	45	HFAF1, FAS-associated factor 1; UBA, alternative s	92.75
1v92_A	46	NSFL1 cofactor P47; 3-helix bundle, recombination;	92.06
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	91.74
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	90.07
2dal_A	62	Protein KIAA0794; FAS associted factor 1, UBA-like	89.91
2dam_A	67	ETEA protein; KIAA0887, UBA-like domain, structura	89.09
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	88.45
2dzl_A	66	Protein FAM100B; UBA-like domain, structural genom	86.56
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	85.11
2qho_B	53	E3 ubiquitin-protein ligase EDD1; protein-protein	83.26
2dhy_A	67	CUE domain-containing protein 1; structural genomi	83.06
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	82.14
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	81.5

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=2.1e-61  Score=384.25  Aligned_cols=191  Identities=49%  Similarity=0.839  Sum_probs=183.3

Q ss_pred             hHHHHHHHHHHHHhcC--CCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            3 DFSRVQKELQECSKDI--EASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~--~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      +.+||++|+++|+++.  ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus         6 a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   85 (201)
T 3k9o_A            6 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI   85 (201)
T ss_dssp             THHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCC
Confidence            7899999999999863  25799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCCch--HH
Q 029412           81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGV--EE  158 (194)
Q Consensus        81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~~~--~~  158 (194)
                      +..+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||+.....+  ++
T Consensus        86 ~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~~~~~~~ee  165 (201)
T 3k9o_A           86 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTK  165 (201)
T ss_dssp             CTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_pred             cCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccccccchhHH
Confidence            9669999999999999999999999999999999999999999999999999999999999999999999976543  89


Q ss_pred             HHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          159 KVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       159 ~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      +|++|++|||++++|+.||+..+||++.|+|+|++
T Consensus       166 kV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~  200 (201)
T 3k9o_A          166 KIENLCAMGFDRNAVIVALSSKSWDVETATELLLS  200 (201)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            99999999999999999999999999999999986

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=1.5e-60  Score=381.86  Aligned_cols=192  Identities=51%  Similarity=0.889  Sum_probs=145.6

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      .+.+||++|+++|+++ ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus        23 ~a~~RL~kEl~~l~~~-~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~  101 (216)
T 2pwq_A           23 KELLRLQKELKDIENE-NVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNIS  101 (216)
T ss_dssp             HHHHHHHHHHHHHHHS-CTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHHhC-CCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCc
Confidence            3789999999999999 569999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCC-chHHHH
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSL-GVEEKV  160 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~-~~~~~~  160 (194)
                      ..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|++.|.++||+|+++||+.... +.++++
T Consensus       102 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~~~~~~~~~~v  181 (216)
T 2pwq_A          102 SQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPKEEPREVII  181 (216)
T ss_dssp             TTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC---------
T ss_pred             CCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCCcccchhhHH
Confidence            6689999999999999999999999999999999999999999999999999999999999999999998765 358999


Q ss_pred             HHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          161 QKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       161 ~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      +++++|||++++++.||++.+|+++.|+|.|++|
T Consensus       182 ~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~~  215 (216)
T 2pwq_A          182 KKITEMGFSEDQAKNALIKANWNETLALNTLLEN  215 (216)
T ss_dssp             ----------------------------------
T ss_pred             HHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence            9999999999999999999999999999999986

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=1.8e-59  Score=383.21  Aligned_cols=192  Identities=48%  Similarity=0.827  Sum_probs=183.7

Q ss_pred             hHHHHHHHHHHHHhcC--CCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            3 DFSRVQKELQECSKDI--EASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~--~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      +.+||++|+++|+++.  ++.||++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus        58 a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV  137 (253)
T 3e46_A           58 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI  137 (253)
T ss_dssp             HHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCc
Confidence            6899999999999862  25799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCCch--HH
Q 029412           81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGV--EE  158 (194)
Q Consensus        81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~~~--~~  158 (194)
                      +..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|++.|.++|++||++||+.+...+  ++
T Consensus       138 ~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~~~~~~~~~~  217 (253)
T 3e46_A          138 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTK  217 (253)
T ss_dssp             CTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCSCCCHHHHH
T ss_pred             cCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcccccCcchHHH
Confidence            9668999999999999999999999999999999999999999999999999999999999999999999977654  79


Q ss_pred             HHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          159 KVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       159 ~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      +|++|++|||++++|+.||+..+||++.|+|+|++.
T Consensus       218 ~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~~  253 (253)
T 3e46_A          218 KIENLCAAGFDRNAVIVALSSKSWDVETATELLLSN  253 (253)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            999999999999999999999999999999999863

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=2.4e-56  Score=357.30  Aligned_cols=182  Identities=48%  Similarity=0.848  Sum_probs=172.0

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      ++.+||++|+++|+++ ++.|+++.+.++ ++++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus         2 ~a~~RL~kEl~~l~~~-~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI   80 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDD-PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI   80 (215)
T ss_dssp             TTHHHHHHHHHHHHTT-TCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSS
T ss_pred             hHHHHHHHHHHHHHhC-CCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcC
Confidence            5789999999999999 569999998876 46699999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCCc-----
Q 029412           81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLG-----  155 (194)
Q Consensus        81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~~-----  155 (194)
                      +..+|.||+++|.++|+|++||.+||.+|++||.+|++++|+|.+||++|++|++.|.++||+||++||+.....     
T Consensus        81 ~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~~~~~~~~  160 (215)
T 1tte_A           81 SSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNV  160 (215)
T ss_dssp             CSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCCCSCCSSCCC
T ss_pred             cCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccCCCcccccch
Confidence            955899999999999999999999999999999999999999999999999999999999999999999986431     


Q ss_pred             --------hHHHHHHHHhcCCChhHHHHHHHHhCCCH
Q 029412          156 --------VEEKVQKLVEMGFPESQVRSTLEIVGGDE  184 (194)
Q Consensus       156 --------~~~~~~~~~~~g~~~~~~~~al~~~~~~~  184 (194)
                              ++++|+.+++|||++++|+.||+.++||+
T Consensus       161 ~~~~~~g~~~~~v~~~~~mg~~~~~~~~al~~~~~~~  197 (215)
T 1tte_A          161 EESDLYGIDHDLIDEFESQGFEKDKIVEVLRRLGVKS  197 (215)
T ss_dssp             SCSSCCCCSHHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred             hhhhhccccHHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence                    26799999999999999999999999998

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=2.9e-51  Score=312.39  Aligned_cols=148  Identities=48%  Similarity=0.892  Sum_probs=143.8

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      .+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         4 ~a~~RL~kEl~~l~~~-~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~   82 (151)
T 4gpr_A            4 MAMRRIQKELREIQQD-PPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNIN   82 (151)
T ss_dssp             HHHHHHHHHHHHHHHS-CCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHHhC-CCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceEC
Confidence            5789999999999999 568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT  151 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~  151 (194)
                       .+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||++
T Consensus        83 -~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p  151 (151)
T 4gpr_A           83 -KNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP  151 (151)
T ss_dssp             -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred             -CCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence             599999999999999999999999999999999999999999999999999999999999999999974

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=5.9e-51  Score=315.95  Aligned_cols=161  Identities=40%  Similarity=0.760  Sum_probs=145.4

Q ss_pred             CchHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            1 MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         1 m~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      |++.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus         3 ~~~~~RL~kEl~~l~~~-~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv   81 (169)
T 1yh2_A            3 MQRASRLKRELHMLATE-PPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI   81 (169)
T ss_dssp             HHHHHHHHHHHHHHHHS-CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             hHHHHHHHHHHHHHHhC-CCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence            46889999999999999 56899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccccccc----CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCCc-
Q 029412           81 SSQSGAICLDILK----DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLG-  155 (194)
Q Consensus        81 ~~~~G~icl~~l~----~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~~-  155 (194)
                      + .+|.||+++|.    ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+....+ 
T Consensus        82 ~-~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~~~~~  160 (169)
T 1yh2_A           82 D-SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKAD  160 (169)
T ss_dssp             C-TTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC----
T ss_pred             C-cCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccccccCC
Confidence            9 68999999998    89999999999999999999999999999999999999999999999999999999976532 


Q ss_pred             hHHHHHHH
Q 029412          156 VEEKVQKL  163 (194)
Q Consensus       156 ~~~~~~~~  163 (194)
                      .++.+++|
T Consensus       161 ~~~~~~~~  168 (169)
T 1yh2_A          161 EEEMLDNL  168 (169)
T ss_dssp             --------
T ss_pred             HHHHhhcC
Confidence            35666554

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=2.2e-51  Score=312.38  Aligned_cols=148  Identities=56%  Similarity=0.965  Sum_probs=142.8

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      ++.+||++|+++|+++ ++.|+++.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus         1 ~~~~RL~~El~~l~~~-~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni   79 (149)
T 1fxt_A            1 SRAKRIMKEIQAVKDD-PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI   79 (149)
T ss_dssp             CCHHHHHHHHHHHHHC-GGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             ChHHHHHHHHHHHHhC-CCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCC
Confidence            3679999999999999 568999999877 99999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                      +..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||++||+
T Consensus        80 ~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~  149 (149)
T 1fxt_A           80 SSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             CSSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred             cCCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            9658999999999999999999999999999999999999999999999999999999999999999985

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=4.8e-51  Score=316.18  Aligned_cols=153  Identities=29%  Similarity=0.654  Sum_probs=145.9

Q ss_pred             Cc--hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecc
Q 029412            1 MI--DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHP   78 (194)
Q Consensus         1 m~--~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   78 (194)
                      |+  +.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus         1 Ms~~a~~RL~kEl~~l~~~-~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HP   79 (169)
T 1ayz_A            1 MSTPARRRLMRDFKRMKED-APPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHP   79 (169)
T ss_dssp             -CCHHHHHHHHHHHHHHHS-CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             CChHHHHHHHHHHHHHHhC-CCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccC
Confidence            65  789999999999999 569999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCCc
Q 029412           79 NISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLG  155 (194)
Q Consensus        79 nv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~~  155 (194)
                      ||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+.....
T Consensus        80 NI~~-~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~~~~~  155 (169)
T 1ayz_A           80 NVYA-NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDMDD  155 (169)
T ss_dssp             TBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCCC-CCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCCCccC
Confidence            9995 999999999999999999999999999999999999999999999999999999999999999999976543

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.2e-51  Score=312.41  Aligned_cols=148  Identities=47%  Similarity=0.826  Sum_probs=141.6

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS   82 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   82 (194)
                      +.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+ 
T Consensus         6 ~~~RL~kEl~~l~~~-~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-   83 (154)
T 2c2v_B            6 LPRRIIKETQRLLAE-PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD-   83 (154)
T ss_dssp             CCHHHHHHHHHHHHS-CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC-
T ss_pred             HHHHHHHHHHHHHhC-CCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCc-
Confidence            579999999999999 569999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412           83 QSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS  152 (194)
Q Consensus        83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~  152 (194)
                      .+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||++||+..
T Consensus        84 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~~  153 (154)
T 2c2v_B           84 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNN  153 (154)
T ss_dssp             TTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999864

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=1.2e-50  Score=311.44  Aligned_cols=149  Identities=54%  Similarity=0.982  Sum_probs=143.0

Q ss_pred             hHHHHHHHHHHHHhcC--CCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            3 DFSRVQKELQECSKDI--EASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~--~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      +.+||++|+++|+++.  ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus         9 a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni   88 (159)
T 2bep_A            9 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI   88 (159)
T ss_dssp             HHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCC
Confidence            7899999999999852  35899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412           81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT  151 (194)
Q Consensus        81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~  151 (194)
                      +..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||++
T Consensus        89 ~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~  159 (159)
T 2bep_A           89 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA  159 (159)
T ss_dssp             CTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence            96689999999999999999999999999999999999999999999999999999999999999999974

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=2.6e-50  Score=311.25  Aligned_cols=146  Identities=48%  Similarity=0.903  Sum_probs=142.2

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      ++.+||++|+++|+++ ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus        21 ~~~~RL~kEl~~l~~~-~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~   99 (166)
T 2ayv_A           21 GALKRINKELNDLSKD-PPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN   99 (166)
T ss_dssp             THHHHHHHHHHHHHHS-CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHHhC-CCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC
Confidence            5789999999999999 569999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA  149 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a  149 (194)
                       .+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus       100 -~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A  166 (166)
T 2ayv_A          100 -SQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA  166 (166)
T ss_dssp             -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             -CCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence             5899999999999999999999999999999999999999999999999999999999999999997

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=2.8e-50  Score=307.30  Aligned_cols=149  Identities=34%  Similarity=0.700  Sum_probs=143.7

Q ss_pred             Cc--hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecc
Q 029412            1 MI--DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHP   78 (194)
Q Consensus         1 m~--~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   78 (194)
                      |+  +.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         1 Ms~~a~~RL~~E~~~l~~~-~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   79 (152)
T 2aak_A            1 MSTPARKRLMRDFKRLQQD-PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHP   79 (152)
T ss_dssp             CCCHHHHHHHHHHHHHHHS-CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             CChHHHHHHHHHHHHHHhC-CCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccC
Confidence            65  789999999999999 568999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412           79 NISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT  151 (194)
Q Consensus        79 nv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~  151 (194)
                      ||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus        80 nv~~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~  151 (152)
T 2aak_A           80 NIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA  151 (152)
T ss_dssp             TBCT-TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred             CCCC-CCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence            9995 99999999999999999999999999999999999999999999999999999999999999999974

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=2.2e-50  Score=307.22  Aligned_cols=147  Identities=46%  Similarity=0.888  Sum_probs=142.7

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      ++.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus         4 ~~~~RL~kEl~~l~~~-~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   82 (150)
T 1z2u_A            4 MALKRIQKELQDLGRD-PPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   82 (150)
T ss_dssp             HHHHHHHHHHHHHHHS-CCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHHhC-CCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCC
Confidence            4789999999999998 568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                      . +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus        83 ~-~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~  150 (150)
T 1z2u_A           83 S-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM  150 (150)
T ss_dssp             T-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             C-CCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4 9999999999999999999999999999999999999999999999999999999999999999985

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=1.6e-50  Score=307.68  Aligned_cols=147  Identities=50%  Similarity=0.921  Sum_probs=142.5

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS   82 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   82 (194)
                      +.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus         2 ~~~RL~kEl~~l~~~-~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   80 (149)
T 2r0j_A            2 IPRRITKETQNLANE-PPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK   80 (149)
T ss_dssp             CCHHHHHHHHHHHHS-CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHhC-CCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCC
Confidence            469999999999999 5699999999999999999999999999999999999999999999999999999999999995


Q ss_pred             CCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412           83 QSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT  151 (194)
Q Consensus        83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~  151 (194)
                       +|+||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus        81 -~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~  148 (149)
T 2r0j_A           81 -LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN  148 (149)
T ss_dssp             -TCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             -CCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence             89999999999999999999999999999999999999999999999999999999999999999985

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.2e-50  Score=309.60  Aligned_cols=145  Identities=35%  Similarity=0.690  Sum_probs=141.2

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS   82 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   82 (194)
                      +.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.
T Consensus        14 ~~~RL~kEl~~l~~~-~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   92 (158)
T 1zdn_A           14 IIRLVYKEVTTLTAD-PPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGA   92 (158)
T ss_dssp             HHHHHHHHHHHHHHS-CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred             HHHHHHHHHHHHHhC-CCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCC
Confidence            679999999999999 5699999999999999999999999999999999999999999999999999999999999995


Q ss_pred             CCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 029412           83 QSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA  149 (194)
Q Consensus        83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a  149 (194)
                       +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||
T Consensus        93 -~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A  158 (158)
T 1zdn_A           93 -NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  158 (158)
T ss_dssp             -TSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             -CCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence             799999999999999999999999999999999999999999999999999999999999999997

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=5.2e-50  Score=309.38  Aligned_cols=147  Identities=44%  Similarity=0.881  Sum_probs=142.7

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      ++.+||++|+++|+++ ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus        19 ~~~~RL~kEl~~l~~~-~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~   97 (165)
T 2c4o_A           19 MALKRIHKELNDLARD-PPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   97 (165)
T ss_dssp             HHHHHHHHHHHHHHSS-CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHHhC-CCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC
Confidence            3789999999999998 569999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                      . +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus        98 ~-~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~  165 (165)
T 2c4o_A           98 S-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM  165 (165)
T ss_dssp             T-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred             C-CCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4 9999999999999999999999999999999999999999999999999999999999999999985

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=2.4e-50  Score=308.54  Aligned_cols=149  Identities=46%  Similarity=0.812  Sum_probs=144.2

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      ++.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus         5 ~~~~RL~kE~~~l~~~-~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   83 (155)
T 1jat_A            5 SLPKRIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID   83 (155)
T ss_dssp             SCCHHHHHHHHHHHHS-CCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHHhC-CCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC
Confidence            4679999999999998 569999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS  152 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~  152 (194)
                       .+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+..
T Consensus        84 -~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~~  153 (155)
T 1jat_A           84 -RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKK  153 (155)
T ss_dssp             -TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEEC
T ss_pred             -CCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccC
Confidence             6999999999999999999999999999999999999999999999999999999999999999999864

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=7.3e-50  Score=315.14  Aligned_cols=150  Identities=55%  Similarity=1.004  Sum_probs=141.3

Q ss_pred             chHHHHHHHHHHHHhcCC------------CCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCc
Q 029412            2 IDFSRVQKELQECSKDIE------------ASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKM   69 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~------------~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v   69 (194)
                      .+.+||++|+++|+++.+            ..|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|
T Consensus        32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V  111 (193)
T 2f4z_A           32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM  111 (193)
T ss_dssp             CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred             HHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeE
Confidence            467999999999999843            27999999999999999999999999999999999999999999999999


Q ss_pred             ccccceecccccCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 029412           70 HFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA  149 (194)
Q Consensus        70 ~f~t~i~Hpnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a  149 (194)
                      +|.|+||||||+..+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||++||
T Consensus       112 ~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya  191 (193)
T 2f4z_A          112 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA  191 (193)
T ss_dssp             EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             EEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence            99999999999966899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 029412          150 KT  151 (194)
Q Consensus       150 ~~  151 (194)
                      +.
T Consensus       192 ~~  193 (193)
T 2f4z_A          192 KE  193 (193)
T ss_dssp             C-
T ss_pred             cC
Confidence            63

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=3.5e-49  Score=304.73  Aligned_cols=147  Identities=28%  Similarity=0.586  Sum_probs=141.3

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      ++.+||++|+++|+++ ++.|+++.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus         3 ~a~~RL~kEl~~l~~~-~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV   81 (164)
T 3h8k_A            3 TALKRLMAEYKQLTLN-PPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI   81 (164)
T ss_dssp             HHHHHHHHHHHHHHHS-CCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred             HHHHHHHHHHHHHHhC-CCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence            4789999999999999 569999998765 99999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccccccc-------------CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Q 029412           81 SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTES  147 (194)
Q Consensus        81 ~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~  147 (194)
                      + .+|+||+++|.             ++|+|++||++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++
T Consensus        82 ~-~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~  160 (164)
T 3h8k_A           82 Y-PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK  160 (164)
T ss_dssp             C-TTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             C-CCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            9 59999999996             789999999999999999999999999999999999999999999999999999


Q ss_pred             HcC
Q 029412          148 FAK  150 (194)
Q Consensus       148 ~a~  150 (194)
                      ++.
T Consensus       161 s~~  163 (164)
T 3h8k_A          161 SLG  163 (164)
T ss_dssp             HHT
T ss_pred             hhc
Confidence            875

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=3.2e-49  Score=302.63  Aligned_cols=147  Identities=33%  Similarity=0.630  Sum_probs=141.7

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      ++.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         9 ~~~~RL~kEl~~l~~~-~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   87 (156)
T 2e2c_A            9 SVSKRLQQELRTLLMS-GDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD   87 (156)
T ss_dssp             CHHHHHHHHHHHHHHH-CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHHhC-CCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCc
Confidence            4789999999999998 568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT  151 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~  151 (194)
                      . +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +|+++|.++||+|+++||..
T Consensus        88 ~-~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~~  155 (156)
T 2e2c_A           88 Q-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQSD  155 (156)
T ss_dssp             T-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHHC
T ss_pred             c-CceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhccC
Confidence            5 99999999999999999999999999999999999999999999999 89999999999999999853

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=2.8e-49  Score=304.66  Aligned_cols=147  Identities=32%  Similarity=0.621  Sum_probs=140.9

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCC-----CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCccccccee
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVW   76 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~-----~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   76 (194)
                      +|.+||++|+++|+++ ++.|+++.|.++     |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus        10 ~~~~RL~kEl~~l~~~-~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~   88 (163)
T 3rcz_B           10 LCKTRLQEERKQWRRD-HPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLF   88 (163)
T ss_dssp             HHHHHHHHHHHHHHHS-CCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             HHHHHHHHHHHHHHhC-CCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCc
Confidence            5889999999999999 569999998765     9999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcccccccccC--CCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           77 HPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        77 Hpnv~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                      ||||+ .+|.||+++|..  +|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus        89 HPnV~-~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~  163 (163)
T 3rcz_B           89 HPNVY-PSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP  163 (163)
T ss_dssp             STTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             cCCCC-CCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence            99999 599999999975  49999999999999999999999999999999999999999999999999999984

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=4.3e-49  Score=302.15  Aligned_cols=146  Identities=33%  Similarity=0.666  Sum_probs=140.1

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecC-----CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceec
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVS-----DNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWH   77 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   77 (194)
                      +.+||++|+++|+++ ++.|+++.|.+     +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus         5 a~~RL~kE~~~l~~~-~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   83 (157)
T 2gjd_A            5 CLQRLQEERKKWRKD-HPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYH   83 (157)
T ss_dssp             HHHHHHHHHHHHHHC-CCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCC
T ss_pred             HHHHHHHHHHHHHhC-CCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCcc
Confidence            789999999999999 56999998864     489999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcccccccccC--CCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           78 PNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        78 pnv~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                      |||+ .+|.||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus        84 Pnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~  157 (157)
T 2gjd_A           84 PNVY-PSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK  157 (157)
T ss_dssp             TTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred             CCCC-CCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            9999 589999999987  79999999999999999999999999999999999999999999999999999995

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=4e-49  Score=304.68  Aligned_cols=146  Identities=32%  Similarity=0.602  Sum_probs=140.5

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecC-CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVS-DNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      +.+||++|+++|+++ ++.|+++.+.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         5 a~~RL~kEl~~l~~~-~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~   83 (165)
T 2ucz_A            5 AQKRLLKELQQLIKD-SPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY   83 (165)
T ss_dssp             HHHHHHHHHHHHHHS-CCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBC
T ss_pred             HHHHHHHHHHHHHhC-CCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCC
Confidence            789999999999998 56999999875 6999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccc-------------cCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHH
Q 029412           82 SQSGAICLDIL-------------KDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESF  148 (194)
Q Consensus        82 ~~~G~icl~~l-------------~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~  148 (194)
                      . +|+||+++|             .++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|++++
T Consensus        84 ~-~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~~  162 (165)
T 2ucz_A           84 P-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKS  162 (165)
T ss_dssp             T-TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             C-CCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence            5 899999999             68999999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 029412          149 AK  150 (194)
Q Consensus       149 a~  150 (194)
                      +.
T Consensus       163 ~~  164 (165)
T 2ucz_A          163 LG  164 (165)
T ss_dssp             TT
T ss_pred             hh
Confidence            75

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=3.2e-49  Score=302.29  Aligned_cols=149  Identities=28%  Similarity=0.542  Sum_probs=142.2

Q ss_pred             CchHHHHHHHHHHHHhcCCCCCeEE-EecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccc
Q 029412            1 MIDFSRVQKELQECSKDIEASGIKV-TPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPN   79 (194)
Q Consensus         1 m~~~~RL~~E~~~l~~~~~~~~i~v-~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   79 (194)
                      |++.+||++|+++|+++ ++.|+++ .+.++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus         3 m~~~~RL~kEl~~l~~~-~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   80 (155)
T 1wzv_A            3 HMASMRVVKELEDLQKK-PPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPN   80 (155)
T ss_dssp             --CHHHHHHHHHHHHHS-CCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             chHHHHHHHHHHHHHhC-CCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCc
Confidence            77999999999999999 4589999 788899999999999 99999999999999999999999999999999999999


Q ss_pred             ccCCCcccccccc-cCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412           80 ISSQSGAICLDIL-KDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS  152 (194)
Q Consensus        80 v~~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~  152 (194)
                      |+. +|.||+++| .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+..
T Consensus        81 V~~-~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~  153 (155)
T 1wzv_A           81 VDE-NGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDR  153 (155)
T ss_dssp             BCT-TCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEEC
T ss_pred             CCC-CCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            995 999999999 899999999999999999999999999999999999999999999999999999999864

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=5.9e-49  Score=310.30  Aligned_cols=146  Identities=45%  Similarity=0.780  Sum_probs=142.2

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS   82 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   82 (194)
                      +.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+.
T Consensus        49 a~~RL~kEl~~l~~~-~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~  127 (194)
T 3bzh_A           49 SAKRIQKELADITLD-PPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINS  127 (194)
T ss_dssp             HHHHHHHHHHHHHHS-CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHhC-CCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECC
Confidence            689999999999998 5689999999999999999999999999999999999999999999999999999999999994


Q ss_pred             CCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           83 QSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        83 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                       +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus       128 -~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~  194 (194)
T 3bzh_A          128 -QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  194 (194)
T ss_dssp             -TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             -CCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence             8999999999999999999999999999999999999999999999999999999999999999985

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=1.5e-48  Score=300.30  Aligned_cols=147  Identities=36%  Similarity=0.686  Sum_probs=139.8

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecC-----CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceec
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVS-----DNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWH   77 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   77 (194)
                      +.+||++|+++|+++ ++.|+.+.+..     +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus         8 a~~RL~kE~~~l~~~-~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   86 (161)
T 2grr_A            8 ALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH   86 (161)
T ss_dssp             HHHHHHHHHHHHHHS-CCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCS
T ss_pred             HHHHHHHHHHHHHhC-CCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCccc
Confidence            679999999999999 56899998753     689999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcccccccccC--CCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412           78 PNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT  151 (194)
Q Consensus        78 pnv~~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~  151 (194)
                      |||+ .+|.||+++|..  +|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||++||+.
T Consensus        87 Pnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~  161 (161)
T 2grr_A           87 PNVY-PSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS  161 (161)
T ss_dssp             TTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC-
T ss_pred             CCCC-CCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence            9999 589999999976  899999999999999999999999999999999999999999999999999999963

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=7.3e-49  Score=299.26  Aligned_cols=147  Identities=29%  Similarity=0.637  Sum_probs=139.8

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      ++.+||++|+++|++.    |+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 sa~~Rl~kEl~~l~~~----~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~   77 (152)
T 2onu_A            2 TSLTRKQCDFTKLIMA----GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVD   77 (152)
T ss_dssp             -CCCHHHHTHHHHHHH----TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             hHHHHHHHHHHhcCcC----CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCc
Confidence            5679999999999875    688888899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHH-HHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLS-VQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS  152 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~  152 (194)
                      ..+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||+..
T Consensus        78 ~~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~~  149 (152)
T 2onu_A           78 EASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASKD  149 (152)
T ss_dssp             TTTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCGG
T ss_pred             CcCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccCc
Confidence            668999999999999999999999999 68999999999999999999999999999999999999999864

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.4e-48  Score=302.42  Aligned_cols=147  Identities=35%  Similarity=0.605  Sum_probs=141.5

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      ++.+||++|+++|+++ ++.||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus        30 ~~~~RL~kEl~~l~~~-~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~  108 (179)
T 1i7k_A           30 PVGKRLQQELMTLMMS-GDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD  108 (179)
T ss_dssp             CHHHHHHHHHHHHHHH-CCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC
T ss_pred             HHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccc
Confidence            4789999999999998 568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT  151 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~  151 (194)
                      . +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +|+++|.++|++++++++..
T Consensus       109 ~-~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~  176 (179)
T 1i7k_A          109 T-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS  176 (179)
T ss_dssp             T-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC-
T ss_pred             c-CCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhcc
Confidence            5 89999999999999999999999999999999999999999999999 99999999999999998875

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=1.6e-47  Score=296.25  Aligned_cols=145  Identities=30%  Similarity=0.589  Sum_probs=138.2

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEec-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPV-SDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      +.+||++|+++|+++ ++.|+++.+. ++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus        15 ~~~RL~kEl~~l~~~-~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~   92 (167)
T 3fn1_B           15 RDKLLVKEVAELEAN-LPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNIT   92 (167)
T ss_dssp             HHHHHHHHHHHHGGG-SCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBC
T ss_pred             HHHHHHHHHHHHHhC-CCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCC
Confidence            689999999999999 5689999864 67899999999 89999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccC------CCCcccCHHHHHHHHHHhhCC-CCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           82 SQSGAICLDILKD------QWSPALTLKTALLSVQALLSA-PAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        82 ~~~G~icl~~l~~------~W~p~~~i~~il~~i~~ll~~-p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                       .+|.||+++|..      +|+|+++|.+||.+|++||.+ |++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus        93 -~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~  167 (167)
T 3fn1_B           93 -ETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR  167 (167)
T ss_dssp             -TTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             -CCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence             699999999975      799999999999999999999 69999999999999999999999999999999995

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=3.1e-47  Score=295.75  Aligned_cols=148  Identities=32%  Similarity=0.579  Sum_probs=138.4

Q ss_pred             hHHHHHHHHHHHHh-c-CC-----CC---CeEEEe-cCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCccc
Q 029412            3 DFSRVQKELQECSK-D-IE-----AS---GIKVTP-VSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHF   71 (194)
Q Consensus         3 ~~~RL~~E~~~l~~-~-~~-----~~---~i~v~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f   71 (194)
                      +.+||++|+++|++ . .+     +.   ++.+.+ .++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|
T Consensus         7 ~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f   86 (172)
T 2y9m_A            7 CMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISF   86 (172)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred             HHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEE
Confidence            68999999999998 4 22     23   466778 78899999999999999999999999999999999999999999


Q ss_pred             cc-ceecccccCCCccccccccc-CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHH-CHHHHHHHHHHHHHHH
Q 029412           72 VT-KVWHPNISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLK-DHQTFLSTARYWTESF  148 (194)
Q Consensus        72 ~t-~i~Hpnv~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~-~~~~f~~~a~~~~~~~  148 (194)
                      .| +||||||+..+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++ |+++|.++||+|++++
T Consensus        87 ~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~~~~  166 (172)
T 2y9m_A           87 MQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAER  166 (172)
T ss_dssp             CTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             eeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            99 99999997569999999998 899999999999999999999999999999999999999 9999999999999998


Q ss_pred             cC
Q 029412          149 AK  150 (194)
Q Consensus       149 a~  150 (194)
                      +.
T Consensus       167 ~~  168 (172)
T 2y9m_A          167 ER  168 (172)
T ss_dssp             HC
T ss_pred             Hh
Confidence            75

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.8e-47  Score=296.09  Aligned_cols=143  Identities=25%  Similarity=0.553  Sum_probs=136.2

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS   82 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   82 (194)
                      +.+||++|+++|+++ ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus        24 a~~RL~kEl~~l~~~-~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~  102 (169)
T 1yrv_A           24 AYLLLHRDFCDLKEN-NYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDP  102 (169)
T ss_dssp             HHHHHHHHHHHHHHH-CCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCT
T ss_pred             HHHHHHHHHHHHHhC-CCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccC
Confidence            689999999999998 5689999999999999999999999999999999999999999999999999999999999954


Q ss_pred             CCccccccccc--CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Q 029412           83 QSGAICLDILK--DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTES  147 (194)
Q Consensus        83 ~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~  147 (194)
                      .+|.||+++|.  ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++ ++++++
T Consensus       103 ~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~  168 (169)
T 1yrv_A          103 HTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR  168 (169)
T ss_dssp             TTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred             CCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence            79999999998  89999999999999999999999999999999999999999999998 877653

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=2.5e-48  Score=297.03  Aligned_cols=149  Identities=35%  Similarity=0.709  Sum_probs=136.0

Q ss_pred             CchHHHHHHHHHHHHhcCCCCCeEEEe-cCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccc
Q 029412            1 MIDFSRVQKELQECSKDIEASGIKVTP-VSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPN   79 (194)
Q Consensus         1 m~~~~RL~~E~~~l~~~~~~~~i~v~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   79 (194)
                      |++.+||++|+++|+++ ++.|+.+.+ .++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus         1 m~a~~RL~kEl~~l~~~-~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   78 (154)
T 1c4z_D            1 MAASRRLMKELEEIRKC-GMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN   78 (154)
T ss_dssp             ---CTTHHHHHTTCSSS-CCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CcHHHHHHHHHHHHHhC-CCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCcccc
Confidence            78999999999999998 458888654 6789999999998 99999999999999999999999999999999999999


Q ss_pred             ccCCCccccccccc-CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412           80 ISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS  152 (194)
Q Consensus        80 v~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~  152 (194)
                      |+. +|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+..
T Consensus        79 v~~-~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~  151 (154)
T 1c4z_D           79 IDE-KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKR  151 (154)
T ss_dssp             BCT-TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC----
T ss_pred             CCC-CCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcccC
Confidence            994 8999999996 89999999999999999999999999999999999999999999999999999999864

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=1.1e-46  Score=295.36  Aligned_cols=147  Identities=31%  Similarity=0.595  Sum_probs=139.4

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEE-ecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVT-PVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      ++.+||++|+++|+++ ++.|+++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         7 ~a~kRL~kEl~~l~~~-~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV   85 (183)
T 3rz3_A            7 SSQKALLLELKGLQEE-PVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI   85 (183)
T ss_dssp             HHHHHHHHHHHHHHHS-CCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTB
T ss_pred             HHHHHHHHHHHHHHhC-CCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCC
Confidence            4789999999999999 56899999 667899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccccccc-------------CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHH------CHHHHHHHH
Q 029412           81 SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLK------DHQTFLSTA  141 (194)
Q Consensus        81 ~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~------~~~~f~~~a  141 (194)
                      +. +|.||+++|.             ++|+|+++|++||.+|++||.+|++++|+|.+||++|++      |+++|.++|
T Consensus        86 ~~-~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v  164 (183)
T 3rz3_A           86 YE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDII  164 (183)
T ss_dssp             CT-TSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred             CC-CCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHHH
Confidence            95 9999999996             889999999999999999999999999999999999998      889999999


Q ss_pred             HHHHHHHcC
Q 029412          142 RYWTESFAK  150 (194)
Q Consensus       142 ~~~~~~~a~  150 (194)
                      +++++++..
T Consensus       165 ~~~v~~s~~  173 (183)
T 3rz3_A          165 RKQVLGTKV  173 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998765

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.8e-47  Score=298.13  Aligned_cols=145  Identities=31%  Similarity=0.647  Sum_probs=137.8

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS   82 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   82 (194)
                      +.+||++|+++|+.    .|+++.+. +|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus        26 a~~RL~kEl~~l~~----~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~  100 (179)
T 2z5d_A           26 GKRRMDTDVIKLIE----SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDE  100 (179)
T ss_dssp             HHHHHHHHHHHHHH----SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHhcCc----CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCC
Confidence            57999999999985    37888886 67899999999999999999999999999999999999999999999999995


Q ss_pred             CCcccccccccCCCCcccCHHHHHHH-HHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412           83 QSGAICLDILKDQWSPALTLKTALLS-VQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS  152 (194)
Q Consensus        83 ~~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~  152 (194)
                      .+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||+..
T Consensus       101 ~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~~  171 (179)
T 2z5d_A          101 ASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEE  171 (179)
T ss_dssp             TTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSHH
T ss_pred             CCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcccc
Confidence            58999999999999999999999999 99999999999999999999999999999999999999999853

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=7.5e-47  Score=293.52  Aligned_cols=141  Identities=32%  Similarity=0.698  Sum_probs=107.7

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecC-CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVS-DNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      ++.+||++|+++|+++ ++.|+++.+.+ +|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus        17 ~~~~rL~kEl~~l~~~-~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV   95 (172)
T 2awf_A           17 RGSLLLRRQLAELNKN-PVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV   95 (172)
T ss_dssp             TTHHHHHHHHHHHHHS-CCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred             HHHHHHHHHHHHHHhC-CCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCC
Confidence            4789999999999998 56999999875 799999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccccccc-------------CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHH-HHHHHHHHH
Q 029412           81 SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQ-TFLSTARYW  144 (194)
Q Consensus        81 ~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~-~f~~~a~~~  144 (194)
                      +. +|.||+++|.             ++|+|+++|++||.+|++||.+|++++|+|.+||++|++|++ +|.++||+|
T Consensus        96 ~~-~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~  172 (172)
T 2awf_A           96 DK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC  172 (172)
T ss_dssp             CT-TCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred             CC-CCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence            95 8999999996             689999999999999999999999999999999999999999 999999975

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=5.9e-47  Score=293.68  Aligned_cols=146  Identities=29%  Similarity=0.566  Sum_probs=136.5

Q ss_pred             CchHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            1 MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         1 m~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      |++.+||++|+++|+++.  .++   +.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus        11 ~~~~~RL~~El~~l~~~~--~~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi   85 (171)
T 1yf9_A           11 LRSNRRREMDYMRLCNST--RKV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNV   85 (171)
T ss_dssp             --CCHHHHHHHHHHHSSS--SCE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred             ccHHHHHHHHHHHHHhCC--CCC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccC
Confidence            467899999999999983  344   357899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccCCCCcccCHHHHHHHH-HHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412           81 SSQSGAICLDILKDQWSPALTLKTALLSV-QALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT  151 (194)
Q Consensus        81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i-~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~  151 (194)
                      +..+|.||+++|.++|+|+++|.+||.+| ++||.+|++++|+|.+||++|++|++.|.++||+|+++||+.
T Consensus        86 ~~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~  157 (171)
T 1yf9_A           86 DERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATP  157 (171)
T ss_dssp             CTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred             cccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCh
Confidence            95589999999999999999999999997 799999999999999999999999999999999999999985

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=5.4e-46  Score=322.46  Aligned_cols=157  Identities=42%  Similarity=0.794  Sum_probs=149.7

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      ++.+||++|+++|+++ ++.|+++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         3 ~a~~RL~kEl~~l~~~-~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~   81 (399)
T 4ddg_A            3 MALKRIHKELNDLARD-PPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   81 (399)
T ss_dssp             HHHHHHHHHHHHHHHS-CCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHhC-CCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence            4789999999999999 568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCCchHHHH
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKV  160 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~~~~~~~  160 (194)
                      . +|.||+++|+++|+|++||.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||++||+.....+++..
T Consensus        82 ~-~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~~v~~De~i~  159 (399)
T 4ddg_A           82 S-NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGGSAYDEAIM  159 (399)
T ss_dssp             T-TCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred             C-CCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhccccchhHHHH
Confidence            4 99999999999999999999999999999999999999999999999999999999999999999999877665433

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=6e-46  Score=285.40  Aligned_cols=142  Identities=28%  Similarity=0.570  Sum_probs=134.8

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEE-ecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVT-PVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      ++.+||++|+++|  + ++.|+++. +.++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus         6 ~~~~RL~kEl~~l--~-~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   81 (160)
T 1y8x_A            6 AAQLRIQKDINEL--N-LPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI   81 (160)
T ss_dssp             HHHHHHHHHHHTC--C-CCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             HHHHHHHHHHHhc--C-CCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence            3789999999999  3 45899998 7889999999998 9999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHH
Q 029412           81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESF  148 (194)
Q Consensus        81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~  148 (194)
                      +. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|++..
T Consensus        82 ~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~  148 (160)
T 1y8x_A           82 DL-EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG  148 (160)
T ss_dssp             CT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSE
T ss_pred             CC-CCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhC
Confidence            95 89999999999999999999999999999999999999999999999999999999999998754

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.9e-45  Score=287.31  Aligned_cols=143  Identities=27%  Similarity=0.535  Sum_probs=135.4

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEE-ecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVT-PVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      ++.+||++|+++|  + ++.|+++. +.++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus        26 ~~~~RL~kEl~~l--~-~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV  101 (180)
T 2nvu_C           26 AAQLRIQKDINEL--N-LPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI  101 (180)
T ss_dssp             HHHHHHHHHHHTC--C-CCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             HHHHHHHHHHHhc--C-CCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCC
Confidence            4789999999999  3 45899998 7889999999998 9999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 029412           81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA  149 (194)
Q Consensus        81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a  149 (194)
                      +. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|++...
T Consensus       102 ~~-~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~~  169 (180)
T 2nvu_C          102 DL-EGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY  169 (180)
T ss_dssp             CT-TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSEE
T ss_pred             CC-CCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCC
Confidence            95 899999999999999999999999999999999999999999999999999999999999987543

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=6.5e-45  Score=286.56  Aligned_cols=144  Identities=27%  Similarity=0.535  Sum_probs=135.9

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEE----ecCCCce---EEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVT----PVSDNLV---HLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTK   74 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~----~~~~~~~---~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   74 (194)
                      ++.+||++|+++|+   +++|+++.    +.++|++   +|+++|. |++|||+||+|+++|.||++||++||+|+|.|+
T Consensus        29 ~a~~RL~kEl~~l~---~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~  104 (190)
T 3o2u_A           29 AARIRLKRDLDSLD---LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKK  104 (190)
T ss_dssp             HHHHHHHHHHHTCC---CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHHHHHHhcc---CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence            47899999999998   34799998    7889999   9999997 888999999999999999999999999999999


Q ss_pred             eecccccCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           75 VWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        75 i~Hpnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                      ||||||+. +|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|++.+..
T Consensus       105 i~HPnV~~-~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~~~  179 (190)
T 3o2u_A          105 IFHPNIDL-KGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSI  179 (190)
T ss_dssp             CCCTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTCEE
T ss_pred             cccCCCCC-CCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhcCC
Confidence            99999994 9999999999999999999999999999999999999999999999999999999999999965543

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=6.4e-43  Score=270.35  Aligned_cols=140  Identities=25%  Similarity=0.464  Sum_probs=130.3

Q ss_pred             chHHHHHHHHHHHHhcC-----------CCCCeEEEecCCCceEEEEEEeCCCCCCCC--CCeEEEEeeCCCCCCCCCCC
Q 029412            2 IDFSRVQKELQECSKDI-----------EASGIKVTPVSDNLVHLTGIIPGPVGTPYE--GGTFRLDITLPDGYPFEPPK   68 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~-----------~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~--gg~f~~~i~fp~~YP~~pP~   68 (194)
                      ++.+||++|+++|+++.           ++.++.+.+.++|+++|+++|.||++|||+  ||.|+++|.||++||++||+
T Consensus         8 ~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~   87 (167)
T 4ds2_A            8 ISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPT   87 (167)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCE
T ss_pred             HHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCE
Confidence            37899999999999974           157899999999999999999999999999  99999999999999999999


Q ss_pred             cccccceecccccCCCcccccccccCCCCcccCHHHHHH-HHHHhhCC--CCCCCchhHHHHHHHHHCHHHHHHHHH
Q 029412           69 MHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALL-SVQALLSA--PAPDDPQDAVVAQQYLKDHQTFLSTAR  142 (194)
Q Consensus        69 v~f~t~i~Hpnv~~~~G~icl~~l~~~W~p~~~i~~il~-~i~~ll~~--p~~~~p~n~~a~~~~~~~~~~f~~~a~  142 (194)
                      |+|.|++|||||+ .+|.||+++|.++|+|+++++++|+ .|++|+.+  |++++|+|.+||++|++|+++|.++||
T Consensus        88 v~f~t~i~HPnv~-~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vr  163 (167)
T 4ds2_A           88 VRFVTPVYSPLVT-GEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR  163 (167)
T ss_dssp             EEESSCCCCSSCC-TTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHT
T ss_pred             EEEeCCcccccCC-CCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHh
Confidence            9999999999999 6999999999999999999999754 56777775  899999999999999999999999998

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=2.5e-42  Score=289.45  Aligned_cols=149  Identities=27%  Similarity=0.491  Sum_probs=137.1

Q ss_pred             chHHHHHHHHHHHHhcCCC---CCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccc----
Q 029412            2 IDFSRVQKELQECSKDIEA---SGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTK----   74 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~---~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~----   74 (194)
                      .+.+||++|+++|+++.++   .++.+.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+    
T Consensus        76 ~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~  155 (323)
T 3ceg_A           76 ARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHS  155 (323)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCc
Confidence            3789999999999998442   256677889999999999999999999999999999999999999999999998    


Q ss_pred             -eecccccCCCccccccccc-------CCCCccc-CHHHHHHHHHHhhC--CCCCCCchhHHH--HHHHHHCHHHHHHHH
Q 029412           75 -VWHPNISSQSGAICLDILK-------DQWSPAL-TLKTALLSVQALLS--APAPDDPQDAVV--AQQYLKDHQTFLSTA  141 (194)
Q Consensus        75 -i~Hpnv~~~~G~icl~~l~-------~~W~p~~-~i~~il~~i~~ll~--~p~~~~p~n~~a--~~~~~~~~~~f~~~a  141 (194)
                       ||||||+ .+|.||+++|.       ++|+|++ +|.+||.+|++||.  +|++++|+|.++  +.+|.+|++.|.++|
T Consensus       156 ~ifHPNV~-~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~v  234 (323)
T 3ceg_A          156 VRFNPNLY-NDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNI  234 (323)
T ss_dssp             CCCBTTBC-TTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHH
T ss_pred             ccccCCCC-cCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHH
Confidence             9999999 59999999997       6999999 89999999999996  677799999987  689999999999999


Q ss_pred             HHHHHHHcCC
Q 029412          142 RYWTESFAKT  151 (194)
Q Consensus       142 ~~~~~~~a~~  151 (194)
                      +.||.+||+.
T Consensus       235 r~~t~k~A~~  244 (323)
T 3ceg_A          235 RQATVKWAML  244 (323)
T ss_dssp             HHHHHHHTTH
T ss_pred             HHHHHHHhhH
Confidence            9999999985

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=4.2e-42  Score=262.66  Aligned_cols=131  Identities=27%  Similarity=0.398  Sum_probs=119.2

Q ss_pred             CchHHHHHHHHHHHHhcCCCCCeEEEecC-C--CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceec
Q 029412            1 MIDFSRVQKELQECSKDIEASGIKVTPVS-D--NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWH   77 (194)
Q Consensus         1 m~~~~RL~~E~~~l~~~~~~~~i~v~~~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   77 (194)
                      +++.+||++|+++|+++.++.|+++.+.+ +  |++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus        20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H   99 (156)
T 2q0v_A           20 VPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEM   99 (156)
T ss_dssp             CCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccccc
Confidence            46889999999999998456899998853 3  59999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCccc---ccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHC
Q 029412           78 PNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKD  133 (194)
Q Consensus        78 pnv~~~~G~i---cl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~  133 (194)
                      |||+. +|+|   |+++|. +|+|+++|++||.+|++||.+|++++|+|.+||++|++|
T Consensus       100 PNV~~-~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n  156 (156)
T 2q0v_A          100 SCVDN-CGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN  156 (156)
T ss_dssp             TTBCT-TSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred             CCCcc-CCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence            99995 7999   899997 599999999999999999999999999999999998875

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=7e-42  Score=256.84  Aligned_cols=128  Identities=23%  Similarity=0.431  Sum_probs=115.4

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecC-C--CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVS-D--NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHP   78 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   78 (194)
                      ++.+||++|+++|+++.++.|+++.+.+ +  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus         6 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   85 (138)
T 1jat_B            6 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLP   85 (138)
T ss_dssp             CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccC
Confidence            4779999999999997446899998853 3  599999999999999999999999999999999999999999999999


Q ss_pred             cccCCCccc--ccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHH
Q 029412           79 NISSQSGAI--CLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQY  130 (194)
Q Consensus        79 nv~~~~G~i--cl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~  130 (194)
                      ||+..+|.|  |+++|. +|+|+++|++||.+|++||.+|++++|+|.+||.+|
T Consensus        86 nv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y  138 (138)
T 1jat_B           86 CVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF  138 (138)
T ss_dssp             TBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred             CEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence            999756999  999886 899999999999999999999999999999988654

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-40  Score=245.98  Aligned_cols=116  Identities=28%  Similarity=0.504  Sum_probs=104.8

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccce-eccccc
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKV-WHPNIS   81 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~   81 (194)
                      +.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+
T Consensus         7 a~~RL~kEl~~l~~~-~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~   85 (125)
T 2fo3_A            7 ANYRIQKELHNFLNN-PPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY   85 (125)
T ss_dssp             --CHHHHHHHHHHHS-CCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBC
T ss_pred             HHHHHHHHHHHHHhC-CCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCC
Confidence            679999999999999 568999999999999999999999999999999999999999999999999999996 999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCC
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDD  120 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~  120 (194)
                       .+|+||+++|.++|+|+++|++||.+|++||.+|+.+.
T Consensus        86 -~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~  123 (125)
T 2fo3_A           86 -SNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK  123 (125)
T ss_dssp             -TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC------
T ss_pred             -CCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence             59999999999999999999999999999999998753

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=5.4e-41  Score=257.19  Aligned_cols=125  Identities=26%  Similarity=0.410  Sum_probs=115.6

Q ss_pred             chHHHHHHHHHHHHhcCCCCC-eEEEe-cCCC--ceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceec
Q 029412            2 IDFSRVQKELQECSKDIEASG-IKVTP-VSDN--LVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWH   77 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~-i~v~~-~~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   77 (194)
                      ++.+||++|+++|+++. +.| +.+.+ .++|  +++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus        25 p~~~RL~kEl~~l~~~~-~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H  103 (160)
T 2a4d_A           25 PRNFRLLEELEEGQKGV-GDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM  103 (160)
T ss_dssp             HHHHHHHHHHHHHHSCC-TTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             hHHHHHHHHHHHHHhCC-CCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCcee
Confidence            57899999999999984 466 78877 4454  8999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCccccccccc--CCCCcccCHHHHHHHHHHhhC-CCCCCCchhHHHH
Q 029412           78 PNISSQSGAICLDILK--DQWSPALTLKTALLSVQALLS-APAPDDPQDAVVA  127 (194)
Q Consensus        78 pnv~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~-~p~~~~p~n~~a~  127 (194)
                      |||+..+|+||+++|.  ++|+|+++|++||.+|++||. +||+++|+|.|||
T Consensus       104 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  156 (160)
T 2a4d_A          104 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  156 (160)
T ss_dssp             TTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred             CCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence            9998668999999998  899999999999999999995 6999999999987

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=9.5e-40  Score=244.58  Aligned_cols=115  Identities=29%  Similarity=0.509  Sum_probs=109.8

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccce-ecccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKV-WHPNI   80 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv   80 (194)
                      ++.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||
T Consensus        20 ~~~~RL~kEl~~l~~~-~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv   98 (136)
T 2h2y_A           20 NANYRIQKELNNFLKN-PPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHV   98 (136)
T ss_dssp             SHHHHHHHHHHHHHHS-CCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTB
T ss_pred             HHHHHHHHHHHHHHhC-CCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcC
Confidence            4679999999999999 568999999999999999999999999999999999999999999999999999996 99999


Q ss_pred             cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCC
Q 029412           81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAP  118 (194)
Q Consensus        81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~  118 (194)
                      +. +|+||+++|.++|+|+++|++||.+|++||.+|+.
T Consensus        99 ~~-~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A           99 YS-NGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             CT-TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             CC-CCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence            94 99999999999999999999999999999999974

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=3.6e-40  Score=255.13  Aligned_cols=125  Identities=26%  Similarity=0.410  Sum_probs=115.1

Q ss_pred             chHHHHHHHHHHHHhcCCCCC-eEEEe-cCCC--ceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceec
Q 029412            2 IDFSRVQKELQECSKDIEASG-IKVTP-VSDN--LVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWH   77 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~-i~v~~-~~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   77 (194)
                      ++.+||++|+++|+++. +.| +.+.+ .++|  +++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus        35 p~~~RL~kEl~~l~~~~-~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H  113 (170)
T 2hlw_A           35 PRNFRLLEELEEGQKGV-GDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM  113 (170)
T ss_dssp             CHHHHHHHHHHHHHHCC-GGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred             HHHHHHHHHHHHHHhCC-CCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence            47899999999999984 466 67776 4454  9999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCccccccccc--CCCCcccCHHHHHHHHHHhhC-CCCCCCchhHHHH
Q 029412           78 PNISSQSGAICLDILK--DQWSPALTLKTALLSVQALLS-APAPDDPQDAVVA  127 (194)
Q Consensus        78 pnv~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~-~p~~~~p~n~~a~  127 (194)
                      |||+..+|.||+++|.  ++|+|+++|++||.+|++||. .||+++|+|.|||
T Consensus       114 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  166 (170)
T 2hlw_A          114 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  166 (170)
T ss_dssp             SSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred             CCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence            9998669999999997  899999999999999999997 4999999999886

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-38  Score=238.59  Aligned_cols=109  Identities=35%  Similarity=0.681  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEE--ecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCccccccee--ccc
Q 029412            4 FSRVQKELQECSKDIEASGIKVT--PVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVW--HPN   79 (194)
Q Consensus         4 ~~RL~~E~~~l~~~~~~~~i~v~--~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--Hpn   79 (194)
                      .+||++|+++|+++ ++.|+++.  +.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|  |||
T Consensus        24 ~~RL~kEl~~l~~~-~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPN  102 (136)
T 2a7l_A           24 QKRLQKELLALQND-PPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPH  102 (136)
T ss_dssp             CHHHHHHHHHHHHS-CCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTT
T ss_pred             HHHHHHHHHHHHhC-CCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCcc
Confidence            49999999999999 56899865  78899999999999999999999999999999999999999999999999  999


Q ss_pred             ccCCCcccccccccCCCCcccCHHHHHHHHHHhhC
Q 029412           80 ISSQSGAICLDILKDQWSPALTLKTALLSVQALLS  114 (194)
Q Consensus        80 v~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~  114 (194)
                      |+ .+|+||+++|.++|+|+++|++||.+|++||.
T Consensus       103 V~-~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A          103 VY-SNGHICLSILTEDWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             BC-TTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             CC-CCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence            99 49999999999999999999999999999984

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=9.7e-37  Score=239.40  Aligned_cols=116  Identities=26%  Similarity=0.559  Sum_probs=103.2

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      ++.+||++|+++|+++ ++.||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+  |||++
T Consensus        14 ~a~~RL~kEl~~l~~~-~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~   90 (187)
T 2f4w_A           14 TATQRLKQDYLRIKKD-PVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFK   90 (187)
T ss_dssp             CHHHHHHHHHHHHHHS-CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBC
T ss_pred             HHHHHHHHHHHHHHhC-CCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceec
Confidence            3789999999999999 56899999999999999999999999999999999999999999999999999999  99998


Q ss_pred             CCCcccccccc---cCCCCcccCHHHHHHHHHHhhCCCCCCCc
Q 029412           82 SQSGAICLDIL---KDQWSPALTLKTALLSVQALLSAPAPDDP  121 (194)
Q Consensus        82 ~~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~p~~~~p  121 (194)
                      . +|+||+++|   .++|+|+++|.+||.+|++||.+|+++..
T Consensus        91 ~-~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g  132 (187)
T 2f4w_A           91 C-NTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLG  132 (187)
T ss_dssp             T-TSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred             c-CCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence            4 899999999   68999999999999999999999998753

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=100.00  E-value=1.1e-37  Score=244.48  Aligned_cols=138  Identities=19%  Similarity=0.349  Sum_probs=120.6

Q ss_pred             chHHHHHHHHHHHHhcCC--CCCeEEEecCCCceEEEEEEeCC-CCCCCCC-----------CeEEEEeeCCCCCCCCCC
Q 029412            2 IDFSRVQKELQECSKDIE--ASGIKVTPVSDNLVHLTGIIPGP-VGTPYEG-----------GTFRLDITLPDGYPFEPP   67 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~--~~~i~v~~~~~~~~~w~~~i~Gp-~~tpy~g-----------g~f~~~i~fp~~YP~~pP   67 (194)
                      ++.+||++|+++|+++.+  +.++++.+.++|++.|+++|.|| ++|||+|           |.|+++|.||++||++||
T Consensus        27 ~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP  106 (186)
T 1zuo_A           27 QASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPP  106 (186)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCC
Confidence            478999999999999842  57899999999999999999998 9999998           899999999999999999


Q ss_pred             Ccccccceecc-cccCCCccccccccc-CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHH
Q 029412           68 KMHFVTKVWHP-NISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWT  145 (194)
Q Consensus        68 ~v~f~t~i~Hp-nv~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~  145 (194)
                      +|+|.|++||| ||+ .+|.||+++|. ++|+|+++|++||.+|++||.+|+...        .|..++.+|.+.++..+
T Consensus       107 ~V~f~tpi~hPnnV~-~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~~~~~~~  177 (186)
T 1zuo_A          107 FVRVVLPVLSGGYVL-GGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNLARAQQS  177 (186)
T ss_dssp             EEEEEESCEESTTBC-GGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCHHHHHHH
T ss_pred             eEEEeCCccCCCccC-CCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhHHHHHHH
Confidence            99999999999 699 59999999996 799999999999999999999987643        23345666666666655


Q ss_pred             HHH
Q 029412          146 ESF  148 (194)
Q Consensus       146 ~~~  148 (194)
                      .+.
T Consensus       178 ~~~  180 (186)
T 1zuo_A          178 YNS  180 (186)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.93  E-value=3.6e-27  Score=178.64  Aligned_cols=113  Identities=18%  Similarity=0.215  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCC----------eEEEEeeCCCCCCCCCCCccccc
Q 029412            4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGG----------TFRLDITLPDGYPFEPPKMHFVT   73 (194)
Q Consensus         4 ~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~t   73 (194)
                      .+||++|++.|.+.       +.+..+|++.|.+++.||++|+|+||          .|.++|.||.+||++||+|+|.+
T Consensus        34 ~~RL~eE~k~L~k~-------v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~  106 (172)
T 2z6o_A           34 VQRLKEEYQSLIRY-------VENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPE  106 (172)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGG
T ss_pred             HHHHHHHHHHHHHH-------hccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCC
Confidence            78999999999984       45667899999999999999999999          99999999999999999999999


Q ss_pred             c-eecccccCCCcccccccc-cC---CCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHH
Q 029412           74 K-VWHPNISSQSGAICLDIL-KD---QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLK  132 (194)
Q Consensus        74 ~-i~Hpnv~~~~G~icl~~l-~~---~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~  132 (194)
                      . +||||||. +|+|||+++ +.   .|+|.++|.++|.-        ....++..|+..+...
T Consensus       107 ~~~~hpnmY~-~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~~  161 (172)
T 2z6o_A          107 LDGKTAKMYR-GGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQK  161 (172)
T ss_dssp             GTTTCSSBCT-TSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCC-CCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhhhHHHHHc
Confidence            8 99999995 899999999 43   56699999999843        2334566666666543

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.80  E-value=2.2e-19  Score=137.02  Aligned_cols=113  Identities=23%  Similarity=0.356  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEE----EecCCCceEEEEEEeCCCCCCCCCCe---EEEEeeCCCCCCCCCCCcccccc--
Q 029412            4 FSRVQKELQECSKDIEASGIKV----TPVSDNLVHLTGIIPGPVGTPYEGGT---FRLDITLPDGYPFEPPKMHFVTK--   74 (194)
Q Consensus         4 ~~RL~~E~~~l~~~~~~~~i~v----~~~~~~~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~--   74 (194)
                      -+|..+|..++.+.-  +.+..    ...++....+-+.+.|.-.++|+|+.   |.+.|.||.+||++||.|.|.++  
T Consensus        30 ~~~~~~dv~~~l~~y--p~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~  107 (162)
T 3r3q_A           30 GRTTFHDSLALLDNF--HSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENF  107 (162)
T ss_dssp             HHHHHHHHHHHHHHC--TTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGC
T ss_pred             hhHHHHHHHHHHHhC--CCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCc
Confidence            367788888887752  34433    23456666677777776668999999   88999999999999999988651  


Q ss_pred             --------ee-cccccCCCcccccccccCCCCc-ccCHHHHHHHHHHhhCCCCCCC
Q 029412           75 --------VW-HPNISSQSGAICLDILKDQWSP-ALTLKTALLSVQALLSAPAPDD  120 (194)
Q Consensus        75 --------i~-Hpnv~~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~p~~~~  120 (194)
                              |+ ||||| .+|+||+++| ++|+| +.++.++|.+|+++|.+|+++.
T Consensus       108 ~m~~~~~~I~~hpnVD-~~G~I~lpyL-~~W~p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          108 DMNTISSSLPIQEYID-SNGWIALPIL-HAWDPAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             CTTTSCTTSTHHHHBC-TTSBBCCGGG-GSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             cccccccccCCCCCCC-CCCcEeCccc-ccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence                    77 99999 4999999999 56999 6799999999999999999975

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.70  E-value=1.4e-18  Score=128.75  Aligned_cols=86  Identities=20%  Similarity=0.375  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCC----------eEEEEeeCCCCCCCCCCCccccc
Q 029412            4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGG----------TFRLDITLPDGYPFEPPKMHFVT   73 (194)
Q Consensus         4 ~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f~t   73 (194)
                      ..||..||..|-+..       ..+.++-..|...+.|++||+|.|+          .|.+++.||.+||..||.|+|.+
T Consensus        36 ~~RlkeEy~alI~yv-------~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~  108 (168)
T 3kpa_A           36 TARLKEEYASLITYV-------EHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPE  108 (168)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGG
T ss_pred             HHHHHHHHHHHHHHH-------HhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeeccc
Confidence            479999999988651       1222333469999999999999999          99999999999999999999999


Q ss_pred             c-eecccccCCCcccccccccCCCCccc
Q 029412           74 K-VWHPNISSQSGAICLDILKDQWSPAL  100 (194)
Q Consensus        74 ~-i~Hpnv~~~~G~icl~~l~~~W~p~~  100 (194)
                      . .+|||++ .+|+|||+++   |+|.+
T Consensus       109 ldgkt~kmY-r~GkICLdIh---wkPlW  132 (168)
T 3kpa_A          109 LEGKTVKMY-RGGKICMTTH---FFPLW  132 (168)
T ss_dssp             GTTTCSSEE-TTTEECCCTT---HHHHH
T ss_pred             ccCcCcccc-CCCcEEeccc---cchhh
Confidence            5 8999999 5999999987   76654

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.48  E-value=3.8e-14  Score=106.26  Aligned_cols=101  Identities=27%  Similarity=0.459  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEe-----cCCCceEEEEEEeCCCCCCCCCCeEEE--EeeCCCCCCCCCCCcccccc----
Q 029412            6 RVQKELQECSKDIEASGIKVTP-----VSDNLVHLTGIIPGPVGTPYEGGTFRL--DITLPDGYPFEPPKMHFVTK----   74 (194)
Q Consensus         6 RL~~E~~~l~~~~~~~~i~v~~-----~~~~~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~----   74 (194)
                      +..+|..++.+.-  +.+....     ...+++.|.++|.    .+|+|+.|.+  .|.||.+||++||.| |.++    
T Consensus        24 ~t~~dv~~vl~~y--p~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m   96 (146)
T 3obq_A           24 LTVRETVNVITLY--KDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSM   96 (146)
T ss_dssp             HHHHHHHHHHHHC--TTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTE
T ss_pred             hhHHHHHHHHHhC--CCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCC
Confidence            4456777766652  2333221     2468999999998    6799999985  899999999999999 6655    


Q ss_pred             --eecccccCCCcccccccccCCCCc-ccCHHHHHHHHHHhhCC
Q 029412           75 --VWHPNISSQSGAICLDILKDQWSP-ALTLKTALLSVQALLSA  115 (194)
Q Consensus        75 --i~Hpnv~~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~  115 (194)
                        .+|||||. +|+||++.|.+ |++ ..++.+++..+++.|.+
T Consensus        97 ~I~~~~~Vd~-~G~i~lpyL~~-W~~~~snL~~ll~~l~~~F~~  138 (146)
T 3obq_A           97 TIKTGKHVDA-NGKIYLPYLHE-WKHPQSDLLGLIQVMIVVFGD  138 (146)
T ss_dssp             EECCBTTBCT-TCBBCCHHHHT-CCTTTCCHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCC-CCCEecccccc-cCCCCCCHHHHHHHHHHHHhh
Confidence              48999995 99999999955 987 78999999999998874

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=99.36  E-value=6e-13  Score=94.40  Aligned_cols=79  Identities=23%  Similarity=0.298  Sum_probs=36.3

Q ss_pred             CCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCCCC-----chHHHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHH
Q 029412          116 PAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSL-----GVEEKVQKLVEMGF-PESQVRSTLEIVGGDENMALE  189 (194)
Q Consensus       116 p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~~~-----~~~~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e  189 (194)
                      .....|.+.++|++|+++++.|..+|+.|+.-||.....     ..++.+++|.+||| ++..++.||+..+||.+.|+|
T Consensus        21 ~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~~~~~~~~e~~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe  100 (108)
T 2cwb_A           21 ETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALE  100 (108)
T ss_dssp             ------------------------------------------CCTTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred             cccCCchhHHHHHHHHhchhccccccccccccCcCCCCCCCcccchHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence            344578999999999999999999999999777765432     34789999999999 568999999999999999999


Q ss_pred             HhhcC
Q 029412          190 KLLSS  194 (194)
Q Consensus       190 ~l~~~  194 (194)
                      .|++|
T Consensus       101 ~L~~~  105 (108)
T 2cwb_A          101 LIFAG  105 (108)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            99975

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.69  E-value=2e-08  Score=61.41  Aligned_cols=39  Identities=23%  Similarity=0.387  Sum_probs=37.1

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .++.+++|++|||++..|+.||+..+|+.+.|+|.|++|
T Consensus         8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~g   46 (49)
T 1ify_A            8 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG   46 (49)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            378999999999999999999999999999999999986

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=98.67  E-value=2.9e-08  Score=58.93  Aligned_cols=39  Identities=33%  Similarity=0.368  Sum_probs=37.1

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      +++.+++|++|||++..|+.||...+|+.+.|++.|++|
T Consensus         4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~   42 (43)
T 2g3q_A            4 KSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS   42 (43)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence            578999999999999999999999999999999999976

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=98.58  E-value=9.4e-08  Score=57.52  Aligned_cols=38  Identities=32%  Similarity=0.493  Sum_probs=35.0

Q ss_pred             HHHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          157 EEKVQKLVEMGF-PESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       157 ~~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      ++.+++|.+||| ++..++.||+..+|+.+.|+|.|++|
T Consensus         8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~   46 (46)
T 2bwb_A            8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG   46 (46)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence            678999999999 56778999999999999999999987

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=98.54  E-value=1e-07  Score=62.91  Aligned_cols=39  Identities=44%  Similarity=0.613  Sum_probs=37.1

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .++.|++|++|||++..|+.||+..+|+.+.|+|.|++|
T Consensus        29 ~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~   67 (73)
T 1vg5_A           29 SEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQ   67 (73)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             cHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            378999999999999999999999999999999999975

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=98.54  E-value=2e-07  Score=57.58  Aligned_cols=39  Identities=36%  Similarity=0.579  Sum_probs=36.8

Q ss_pred             hHHHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          156 VEEKVQKLVEMGF-PESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       156 ~~~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .++.+++|++||| ++..++.||+..+|+.+.|+|.|+++
T Consensus        12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~   51 (52)
T 2jy5_A           12 FQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS   51 (52)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            3689999999999 99999999999999999999999975

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.52  E-value=1.7e-08  Score=65.17  Aligned_cols=50  Identities=24%  Similarity=0.370  Sum_probs=43.3

Q ss_pred             HHHHHHHcCCCCCchHHHHHHHHhcCCChhHHHHHHHHhCC-CHHHHHHHhhcC
Q 029412          142 RYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGG-DENMALEKLLSS  194 (194)
Q Consensus       142 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~al~~~~~-~~~~~~e~l~~~  194 (194)
                      |.|+..|+..   .+++.+++|++|||++..|++||...+| +++.|++.|+++
T Consensus         8 r~~t~~ya~~---~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~   58 (64)
T 2cpw_A            8 RNRQQRPGTI---KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH   58 (64)
T ss_dssp             CCSCCSSCSS---SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred             chhhhccccc---CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence            4566677765   3478999999999999999999999999 999999999874

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=98.49  E-value=1.7e-07  Score=58.10  Aligned_cols=38  Identities=37%  Similarity=0.585  Sum_probs=35.7

Q ss_pred             HHHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          157 EEKVQKLVEMGF-PESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       157 ~~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      ++.+++|++||| ++..++.||+..+|+.+.|+|.|+++
T Consensus        12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~   50 (53)
T 2knz_A           12 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGS   50 (53)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence            578999999999 99999999999999999999999874

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=98.42  E-value=3.2e-07  Score=57.86  Aligned_cols=38  Identities=32%  Similarity=0.493  Sum_probs=34.8

Q ss_pred             HHHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          157 EEKVQKLVEMGF-PESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       157 ~~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      ++.+++|.+||| ++..++.||+..+||.+.|+|.|++|
T Consensus        18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~   56 (58)
T 1wr1_B           18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG   56 (58)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            578999999999 57788999999999999999999976

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.40  E-value=3e-07  Score=61.98  Aligned_cols=38  Identities=29%  Similarity=0.539  Sum_probs=36.5

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      +++.|++|++|||++..|+.||+..+|+.++|+|.|++
T Consensus        29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~s   66 (83)
T 1veg_A           29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAH   66 (83)
T ss_dssp             CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            48999999999999999999999999999999999986

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.39  E-value=2.8e-07  Score=59.12  Aligned_cols=40  Identities=33%  Similarity=0.438  Sum_probs=37.1

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .+++.+++|++|||++..|+.||...+|+.+.|++.|+++
T Consensus         8 ~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~   47 (63)
T 1wji_A            8 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTS   47 (63)
T ss_dssp             SCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            3588999999999999999999999999999999999863

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.34  E-value=6.7e-07  Score=59.05  Aligned_cols=38  Identities=26%  Similarity=0.454  Sum_probs=35.5

Q ss_pred             HHHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          157 EEKVQKLVEMGF-PESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       157 ~~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      ++.+++|.+||| ++..++.||+..+|+.+.|+|.|++|
T Consensus        30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~   68 (74)
T 1vej_A           30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGA   68 (74)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            689999999999 67888999999999999999999975

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=98.33  E-value=5.7e-07  Score=59.39  Aligned_cols=40  Identities=28%  Similarity=0.439  Sum_probs=37.5

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .+++.+++|++|||++..|++||+..+|+.+.|++.|+++
T Consensus        28 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~   67 (73)
T 1wiv_A           28 IDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNN   67 (73)
T ss_dssp             SCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            3589999999999999999999999999999999999874

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.32  E-value=5.6e-07  Score=57.75  Aligned_cols=39  Identities=26%  Similarity=0.362  Sum_probs=36.8

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      .+++.+++|++|||++..|++||+..+|+.+.|++.|++
T Consensus         8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~   46 (63)
T 2dak_A            8 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS   46 (63)
T ss_dssp             CCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            458999999999999999999999999999999999986

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=98.32  E-value=9.5e-07  Score=51.24  Aligned_cols=36  Identities=33%  Similarity=0.535  Sum_probs=34.2

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412          157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLL  192 (194)
Q Consensus       157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~  192 (194)
                      ++.+++|++|||++..|+.||...+|+.+.|++.|+
T Consensus         5 ~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~   40 (40)
T 1z96_A            5 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL   40 (40)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence            678999999999999999999999999999999885

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.28  E-value=1.1e-06  Score=54.66  Aligned_cols=39  Identities=31%  Similarity=0.438  Sum_probs=34.4

Q ss_pred             chHHHHHHHHhcCCCh-hHHHHHHHHhCCCHHHHHHHhhc
Q 029412          155 GVEEKVQKLVEMGFPE-SQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~-~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      ..++.+++|.+|||.. ..++.||+..+|+.+.|++.|++
T Consensus         8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~   47 (54)
T 2dah_A            8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ   47 (54)
T ss_dssp             SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            3478999999999955 55799999999999999999985

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=98.26  E-value=4.1e-07  Score=54.94  Aligned_cols=39  Identities=36%  Similarity=0.491  Sum_probs=36.5

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      +++.|+.|++|||++..|++||.+.+|+++.|++.|+++
T Consensus         4 e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~   42 (47)
T 1dv0_A            4 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ   42 (47)
T ss_dssp             CHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            367899999999999999999999999999999999875

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.20  E-value=1.8e-06  Score=60.28  Aligned_cols=39  Identities=33%  Similarity=0.495  Sum_probs=37.0

Q ss_pred             hHHHHHHHHhc-CCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          156 VEEKVQKLVEM-GFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       156 ~~~~~~~~~~~-g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .+++|++|++| ||++..|+.||.+.+||.+.|++.|++|
T Consensus        39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg   78 (104)
T 1wj7_A           39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG   78 (104)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            37899999999 9999999999999999999999999976

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.16  E-value=3.1e-06  Score=50.98  Aligned_cols=38  Identities=26%  Similarity=0.365  Sum_probs=35.5

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      .+++.+++|++|||++..|++||...+ +.+.|++.|++
T Consensus         8 ~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~   45 (47)
T 2ekk_A            8 VNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLT   45 (47)
T ss_dssp             SCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence            458999999999999999999999998 99999999986

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.14  E-value=2e-06  Score=55.35  Aligned_cols=39  Identities=23%  Similarity=0.461  Sum_probs=36.2

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHh-CCCHHHHHHHhhc
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIV-GGDENMALEKLLS  193 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~-~~~~~~~~e~l~~  193 (194)
                      .+++.+++|++|||++..|++||... +|+++.|++.|++
T Consensus         8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~   47 (64)
T 1whc_A            8 AELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLME   47 (64)
T ss_dssp             CCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            35789999999999999999999999 7999999999986

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.08  E-value=3.5e-06  Score=56.92  Aligned_cols=39  Identities=31%  Similarity=0.471  Sum_probs=36.6

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      +++.+++|++|||++..|++||...+|+++.|++.|+++
T Consensus        29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~   67 (83)
T 2dai_A           29 DEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEH   67 (83)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            578999999999999999999999999999999999863

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.08  E-value=4.9e-06  Score=56.43  Aligned_cols=37  Identities=24%  Similarity=0.455  Sum_probs=35.4

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      ++.+++|++|||++..|++||...+|+.+.|++.|++
T Consensus        22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~   58 (85)
T 2dkl_A           22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLE   58 (85)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            6889999999999999999999999999999999986

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.05  E-value=3.7e-06  Score=55.62  Aligned_cols=39  Identities=31%  Similarity=0.452  Sum_probs=36.1

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHhC-CCHHHHHHHhhc
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIVG-GDENMALEKLLS  193 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~~-~~~~~~~e~l~~  193 (194)
                      .+++.+++|++|||++..|++||...+ |+++.|++.|++
T Consensus         8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~   47 (74)
T 2dag_A            8 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMS   47 (74)
T ss_dssp             SCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence            458999999999999999999999998 589999999986

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.02  E-value=3.6e-06  Score=54.11  Aligned_cols=39  Identities=26%  Similarity=0.351  Sum_probs=35.6

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHhCC-CHHHHHHHhhc
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIVGG-DENMALEKLLS  193 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~-~~~~~~e~l~~  193 (194)
                      .+++.+++|++|||+++.|++||...++ +++.|++.|++
T Consensus         8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~   47 (64)
T 2crn_A            8 SSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHD   47 (64)
T ss_dssp             CSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence            4578899999999999999999999976 99999999985

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.92  E-value=1e-05  Score=50.77  Aligned_cols=37  Identities=22%  Similarity=0.362  Sum_probs=35.4

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      ++.|+.|++|||.++.|++||++.+.+.++|++-|++
T Consensus        20 ~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFS   56 (63)
T 1wgn_A           20 RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA   56 (63)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            6789999999999999999999999999999999986

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=97.89  E-value=2e-05  Score=47.78  Aligned_cols=38  Identities=29%  Similarity=0.432  Sum_probs=34.7

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLL  192 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~  192 (194)
                      ..++.|++|++|||++.+|+.||...+++.+.|+-.|+
T Consensus        10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLl   47 (52)
T 2ooa_A           10 NVDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILR   47 (52)
T ss_dssp             -CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence            34799999999999999999999999999999997775

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=97.89  E-value=1.1e-05  Score=54.60  Aligned_cols=38  Identities=32%  Similarity=0.358  Sum_probs=35.6

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhC-CCHHHHHHHhhc
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVG-GDENMALEKLLS  193 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~-~~~~~~~e~l~~  193 (194)
                      +++.+++|++|||++..|++||...+ |+++.|++.|++
T Consensus        29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~   67 (84)
T 1vek_A           29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLS   67 (84)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            58999999999999999999999995 999999999986

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.78  E-value=5.5e-05  Score=46.09  Aligned_cols=38  Identities=18%  Similarity=0.364  Sum_probs=35.1

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLL  192 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~  192 (194)
                      ..++.|.+|+++||++++|+.||...+++.+.|...|+
T Consensus         8 ~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~   45 (53)
T 2d9s_A            8 QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILR   45 (53)
T ss_dssp             CSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHH
Confidence            34788999999999999999999999999999998776

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.67  E-value=5.9e-05  Score=48.61  Aligned_cols=38  Identities=34%  Similarity=0.385  Sum_probs=33.1

Q ss_pred             HHHHHHHHhcCCChh-HHHHHHHHhCCCHHHHHHHhhcC
Q 029412          157 EEKVQKLVEMGFPES-QVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       157 ~~~~~~~~~~g~~~~-~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .+.+++|.+|||..+ .++.||.+.+.+.+.|+|.|+++
T Consensus        20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~   58 (67)
T 2dna_A           20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS   58 (67)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            358999999998555 55999999999999999999874

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=97.66  E-value=5.2e-05  Score=55.04  Aligned_cols=40  Identities=28%  Similarity=0.346  Sum_probs=37.5

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      ..++.+++|++|||++..|++||...+|+++.|++.|+++
T Consensus        77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~  116 (126)
T 2lbc_A           77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSH  116 (126)
T ss_dssp             CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            4588999999999999999999999999999999999875

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=97.63  E-value=0.00013  Score=52.36  Aligned_cols=38  Identities=29%  Similarity=0.481  Sum_probs=35.4

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .+.+.+|.+|||+...|++||...+.|.++|+|.|+++
T Consensus        77 ~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~  114 (118)
T 4ae4_A           77 LQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR  114 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence            46899999999999999999999999999999999863

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=97.54  E-value=0.0001  Score=45.00  Aligned_cols=38  Identities=18%  Similarity=0.351  Sum_probs=35.2

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLL  192 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~  192 (194)
                      +.++.|..|++|||++.+++.||...+.|.+.|..-|+
T Consensus         6 p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLl   43 (56)
T 2juj_A            6 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR   43 (56)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred             CChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHH
Confidence            45899999999999999999999999999999997775

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=97.42  E-value=9.1e-05  Score=63.14  Aligned_cols=40  Identities=23%  Similarity=0.370  Sum_probs=37.8

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      ..++.|++|++|||++..|++||++.+|+.++|+|+|++|
T Consensus       167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~g  206 (368)
T 1oqy_A          167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG  206 (368)
T ss_dssp             THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTS
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            3588999999999999999999999999999999999986

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=97.33  E-value=0.00027  Score=43.44  Aligned_cols=37  Identities=22%  Similarity=0.201  Sum_probs=33.6

Q ss_pred             HHHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          157 EEKVQKLVEMGF-PESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       157 ~~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      ...+++|.+||| ++..-+.+|+..+|+.+.|++.|++
T Consensus        10 a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~   47 (54)
T 2cp8_A           10 AALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQ   47 (54)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            458889999999 8999999999999999999988874

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=97.31  E-value=8.2e-05  Score=63.43  Aligned_cols=72  Identities=25%  Similarity=0.323  Sum_probs=57.8

Q ss_pred             hhHHHHHHHHHCHHHHHHHHHHHHHHHc-C-------------CC-----C--CchHHHHHHHHhcCCChhHHHHHHHHh
Q 029412          122 QDAVVAQQYLKDHQTFLSTARYWTESFA-K-------------TS-----S--LGVEEKVQKLVEMGFPESQVRSTLEIV  180 (194)
Q Consensus       122 ~n~~a~~~~~~~~~~f~~~a~~~~~~~a-~-------------~~-----~--~~~~~~~~~~~~~g~~~~~~~~al~~~  180 (194)
                      .|++.++++++|.+.|.+...+.+..-+ .             ..     .  ..+.+.|+.|++|||++..|+.||.++
T Consensus       270 ~nP~l~~~I~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~ee~eaI~rL~~mGF~~~~a~~al~a~  349 (368)
T 1oqy_A          270 ENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFAC  349 (368)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTTCSSCCCCTTTHHHHHHHHHHTCCSHHHHHHTSSS
T ss_pred             hCHHHHHHHHHCHHHHHHHHcCcccccccccccccccccccccCCccccccCCCcCHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            4899999999999999999865421100 0             00     1  124689999999999999999999999


Q ss_pred             CCCHHHHHHHhhc
Q 029412          181 GGDENMALEKLLS  193 (194)
Q Consensus       181 ~~~~~~~~e~l~~  193 (194)
                      +|+++.|++.|++
T Consensus       350 ~~n~e~A~~~L~~  362 (368)
T 1oqy_A          350 EKNENLAANFLLS  362 (368)
T ss_dssp             SSCSSHHHHHHHH
T ss_pred             CCCHHHHHHHHhh
Confidence            9999999999986

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=97.26  E-value=0.00052  Score=40.32  Aligned_cols=36  Identities=19%  Similarity=0.362  Sum_probs=33.9

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412          157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLL  192 (194)
Q Consensus       157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~  192 (194)
                      ++.|..|+.|||++++|+.||...+.+.+.|..-|+
T Consensus         5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~   40 (46)
T 2oo9_A            5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR   40 (46)
T ss_dssp             HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence            788999999999999999999999999999998775

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=96.54  E-value=0.003  Score=45.18  Aligned_cols=37  Identities=22%  Similarity=0.401  Sum_probs=34.3

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      .+.+++|++|||++..|++||...+.+.+.|++.|++
T Consensus         9 ~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~   45 (118)
T 4ae4_A            9 RQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFA   45 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            5789999999999999999999999999999999874

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.39  E-value=0.012  Score=42.05  Aligned_cols=68  Identities=21%  Similarity=0.215  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCccccc
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVT   73 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   73 (194)
                      ...+...|+..|..--+ ..+.+  .++....+.+.|....+..-..-.+.+.+.||++||..||.|.+.+
T Consensus        11 ~~e~q~~EleaL~sIy~-d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           11 YGEEQRNELEALESIYP-DSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             HHHHHHHHHHHHHHHCS-SSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             hHHHHHHHHHHHHHHcc-CceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            34677889988887532 33443  2333456666665322222234478899999999999999987644

>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=94.77  E-value=0.035  Score=33.75  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=28.6

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHhCC-CHHHHHHHhh
Q 029412          158 EKVQKLVEMGFPESQVRSTLEIVGG-DENMALEKLL  192 (194)
Q Consensus       158 ~~~~~~~~~g~~~~~~~~al~~~~~-~~~~~~e~l~  192 (194)
                      +-++.|++|||+++-|.+||+.-|. ....|.|-|.
T Consensus        11 qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~   46 (54)
T 2cos_A           11 QMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYIS   46 (54)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4489999999999999999999877 4556667663

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=94.72  E-value=0.18  Score=35.79  Aligned_cols=68  Identities=13%  Similarity=0.154  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEecC--CCceEEEEEEeCCCCCCC--CCCeEEEEeeCCCCCCCCCCCcccccc
Q 029412            6 RVQKELQECSKDIEASGIKVTPVS--DNLVHLTGIIPGPVGTPY--EGGTFRLDITLPDGYPFEPPKMHFVTK   74 (194)
Q Consensus         6 RL~~E~~~l~~~~~~~~i~v~~~~--~~~~~w~~~i~Gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t~   74 (194)
                      +...|+..|+.--+ ..+.+....  .....+.+.|..+.+..-  ..-.+.+.+.||++||..+|.|...+.
T Consensus        12 ~~~~EleaL~SIY~-de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~   83 (128)
T 2day_A           12 VLPSEVEVLESIYL-DELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   83 (128)
T ss_dssp             HHHHHHHHHHHHST-TTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHHHHCC-CceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence            56788888887532 345443221  234556666653322111  124788999999999999999987763

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.67  E-value=0.39  Score=34.08  Aligned_cols=67  Identities=16%  Similarity=0.042  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHhcCC-CCCeEEE-ecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCccccc
Q 029412            6 RVQKELQECSKDIE-ASGIKVT-PVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVT   73 (194)
Q Consensus         6 RL~~E~~~l~~~~~-~~~i~v~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   73 (194)
                      ....|+..|+.--+ +..+.+. ....+...+.+.|...... -..-.+.+.+.+|++||..||.|...+
T Consensus        11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~~   79 (128)
T 2ebk_A           11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISINS   79 (128)
T ss_dssp             HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred             HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence            45678888776422 1134322 1122345777777633211 012478899999999999999987653

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=94.59  E-value=0.12  Score=37.19  Aligned_cols=66  Identities=11%  Similarity=0.132  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEecC-------CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCccccc
Q 029412            5 SRVQKELQECSKDIEASGIKVTPVS-------DNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVT   73 (194)
Q Consensus         5 ~RL~~E~~~l~~~~~~~~i~v~~~~-------~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   73 (194)
                      .+...|+..|+.--+ ..+.+. ..       .....+.+.|.+..+ .-..-.+.+.+.+|++||..||.|.+.+
T Consensus        13 e~q~~EleaL~SIY~-d~~~~~-~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~   85 (138)
T 2yz0_A           13 EIQCNELEAIRSIYM-DDFTDL-TKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN   85 (138)
T ss_dssp             HHHHHHHHHHHTTSS-SSEECC-STTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred             HHHHHHHHHHHHHCh-hhheec-ccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence            345677777776422 223221 11       124567777764322 1123478899999999999999988754

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=93.83  E-value=0.52  Score=36.08  Aligned_cols=84  Identities=20%  Similarity=0.318  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccCCC
Q 029412            5 SRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQS   84 (194)
Q Consensus         5 ~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~   84 (194)
                      .+|.+|+.++-=+      .+...+.++....+.+....     |....++|.++.+||.+||.+...-|.  |.     
T Consensus         4 ~~li~Ei~~iGW~------~l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~-----   65 (186)
T 3zqs_A            4 SSLIEEIGTLGWD------KLVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--PF-----   65 (186)
T ss_dssp             CSHHHHHHHHCGG------GEEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--CC-----
T ss_pred             HHHHHHHHHhCCc------eeeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--Cc-----
Confidence            3577777776433      12223567888999998543     578999999999999999987655433  10     


Q ss_pred             cccccccccCCCCcccCHHHHHHHHHHhhC
Q 029412           85 GAICLDILKDQWSPALTLKTALLSVQALLS  114 (194)
Q Consensus        85 G~icl~~l~~~W~p~~~i~~il~~i~~ll~  114 (194)
                         .     -.|+|..++.+++...+..+.
T Consensus        66 ---~-----~~w~~~ssL~~v~~qF~~~Le   87 (186)
T 3zqs_A           66 ---C-----ASWTPQSSLISIYSQFLAAIE   87 (186)
T ss_dssp             ---C-----CCCCTTCCHHHHHHHHHHHHH
T ss_pred             ---c-----cccCCCccHHHHHHHHHHHHH
Confidence               1     258888888888877766543

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=93.50  E-value=0.16  Score=32.10  Aligned_cols=37  Identities=30%  Similarity=0.328  Sum_probs=32.8

Q ss_pred             hHHHHHHHHh-cCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412          156 VEEKVQKLVE-MGFPESQVRSTLEIVGGDENMALEKLL  192 (194)
Q Consensus       156 ~~~~~~~~~~-~g~~~~~~~~al~~~~~~~~~~~e~l~  192 (194)
                      ..+.|..|.+ -|....+|.+||.+.++|.++|.+.|.
T Consensus         9 t~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr   46 (64)
T 2cp9_A            9 SKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH   46 (64)
T ss_dssp             CCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3577888877 499999999999999999999999986

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=93.48  E-value=0.46  Score=33.95  Aligned_cols=70  Identities=14%  Similarity=0.049  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCC-----CceEEEEEEeCCCCC-CCCCCeEEEEeeCCCCCCCCCCCccccc
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGT-PYEGGTFRLDITLPDGYPFEPPKMHFVT   73 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~-----~~~~w~~~i~Gp~~t-py~gg~f~~~i~fp~~YP~~pP~v~f~t   73 (194)
                      ...+...|+..|+.--+ ..+.+.....     ......+.|.....+ .-..-.+.+.|.||++||..||.|.+..
T Consensus        11 ~~e~q~~EleaL~SIY~-d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   86 (137)
T 1ukx_A           11 YSQRQDHELQALEAIYG-SDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN   86 (137)
T ss_dssp             HHHHHHHHHHHHHHHTS-SSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred             hHHHHHHHHHHHHHHCc-ccceeccCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence            34567788888887532 3343321111     134566666521111 0012468899999999999999997743

>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}

Probab=92.75  E-value=0.15  Score=29.97  Aligned_cols=36  Identities=17%  Similarity=0.122  Sum_probs=30.7

Q ss_pred             hHHHHHHHHhc-CCCh-hHHHHHHHHhCCCHHHHHHHh
Q 029412          156 VEEKVQKLVEM-GFPE-SQVRSTLEIVGGDENMALEKL  191 (194)
Q Consensus       156 ~~~~~~~~~~~-g~~~-~~~~~al~~~~~~~~~~~e~l  191 (194)
                      .++.+.+++++ |.+. ..|+.-|+.+|||.+.|+-..
T Consensus         5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f   42 (45)
T 3e21_A            5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGV   42 (45)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence            37888888886 8786 999999999999999998543

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3

Probab=92.06  E-value=0.28  Score=28.39  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=30.8

Q ss_pred             HHHHHHHHhc-CCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          157 EEKVQKLVEM-GFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       157 ~~~~~~~~~~-g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      ++.+++++.. |.+...|+..|+..+|+.+.|+...+.
T Consensus         6 ~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~   43 (46)
T 1v92_A            6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE   43 (46)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            5677777764 889999999999999999999966543

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=91.74  E-value=0.73  Score=33.93  Aligned_cols=23  Identities=22%  Similarity=0.532  Sum_probs=20.5

Q ss_pred             eEEEEeeCCCCCCCCCCCccccc
Q 029412           51 TFRLDITLPDGYPFEPPKMHFVT   73 (194)
Q Consensus        51 ~f~~~i~fp~~YP~~pP~v~f~t   73 (194)
                      .+.++|.+|.+||..+|.|...+
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~   98 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRS   98 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEEC
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEe
Confidence            79999999999999999987554

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=90.07  E-value=0.59  Score=28.92  Aligned_cols=39  Identities=28%  Similarity=0.495  Sum_probs=35.1

Q ss_pred             chHHHHHHHHhc--CCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          155 GVEEKVQKLVEM--GFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       155 ~~~~~~~~~~~~--g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      ..++.++.|.+|  .++...+..+|++++++.+.|.+.|+.
T Consensus         8 ~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~   48 (59)
T 1wgl_A            8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ   48 (59)
T ss_dssp             SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            348899999997  889999999999999999999999874

>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.91  E-value=0.59  Score=29.13  Aligned_cols=37  Identities=24%  Similarity=0.337  Sum_probs=31.7

Q ss_pred             hHHHHHHHHh-cCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412          156 VEEKVQKLVE-MGFPESQVRSTLEIVGGDENMALEKLL  192 (194)
Q Consensus       156 ~~~~~~~~~~-~g~~~~~~~~al~~~~~~~~~~~e~l~  192 (194)
                      .++.+++++. -|-+...|+..|+..+|+.+.|+...+
T Consensus        15 ~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff   52 (62)
T 2dal_A           15 LKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFL   52 (62)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3678888887 489999999999999999999996554

>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.09  E-value=0.74  Score=29.19  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=30.7

Q ss_pred             HHHHHHHHhc-C-CChhHHHHHHHHhCCCHHHHHHHhh
Q 029412          157 EEKVQKLVEM-G-FPESQVRSTLEIVGGDENMALEKLL  192 (194)
Q Consensus       157 ~~~~~~~~~~-g-~~~~~~~~al~~~~~~~~~~~e~l~  192 (194)
                      ++++++++.. | -+...|+..|+..+|+.+.|+...+
T Consensus        19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff   56 (67)
T 2dam_A           19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRL   56 (67)
T ss_dssp             HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            5778888775 6 7899999999999999999996654

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=88.45  E-value=0.23  Score=36.47  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=20.1

Q ss_pred             eEEEEeeCCCCCCCCCCCccccc
Q 029412           51 TFRLDITLPDGYPFEPPKMHFVT   73 (194)
Q Consensus        51 ~f~~~i~fp~~YP~~pP~v~f~t   73 (194)
                      .+.+.+.+|.+||..||.|....
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~   96 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRS   96 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEEC
T ss_pred             eEEEEEECCCCCCCCCCeEEEEc
Confidence            58899999999999999997654

>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.56  E-value=1.4  Score=27.75  Aligned_cols=36  Identities=17%  Similarity=0.212  Sum_probs=30.4

Q ss_pred             HHHHHHHhc-CCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          158 EKVQKLVEM-GFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       158 ~~~~~~~~~-g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      +.+++++.. |-+...|+..|+..+|+.+.|+...+.
T Consensus        19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~   55 (66)
T 2dzl_A           19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ   55 (66)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            567777764 889999999999999999999976553

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=85.11  E-value=1.9  Score=40.36  Aligned_cols=39  Identities=26%  Similarity=0.362  Sum_probs=36.1

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      .+++.++.+.+|||+...|++||++.+.+.++|++.|++
T Consensus       719 ~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs  757 (854)
T 3ihp_A          719 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS  757 (854)
T ss_dssp             CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhc
Confidence            357899999999999999999999999999999998875

>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}

Probab=83.26  E-value=3.5  Score=24.34  Aligned_cols=38  Identities=29%  Similarity=0.287  Sum_probs=33.3

Q ss_pred             hHHHHHHHHh--cCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          156 VEEKVQKLVE--MGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       156 ~~~~~~~~~~--~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      +++.+.+...  .|..+.-.+..|..-|.|.+.|+-.|+|
T Consensus         9 Pe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLs   48 (53)
T 2qho_B            9 PEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLS   48 (53)
T ss_dssp             CHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC
T ss_pred             cHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhc
Confidence            4777777754  6999999999999999999999998886

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.06  E-value=3.1  Score=26.33  Aligned_cols=38  Identities=13%  Similarity=0.301  Sum_probs=33.8

Q ss_pred             hHHHHHHHHhc--CCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          156 VEEKVQKLVEM--GFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       156 ~~~~~~~~~~~--g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      .++.++.|.+|  ..+...+...|.+++++.+.|++.|+.
T Consensus        18 ~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~   57 (67)
T 2dhy_A           18 FNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ   57 (67)
T ss_dssp             SHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            46888999987  788999999999999999999999874

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}

Probab=82.14  E-value=2  Score=29.55  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=32.0

Q ss_pred             chHHHHHHHHh-cCCChhHHHHHHHHhCCCHHHHHHHh
Q 029412          155 GVEEKVQKLVE-MGFPESQVRSTLEIVGGDENMALEKL  191 (194)
Q Consensus       155 ~~~~~~~~~~~-~g~~~~~~~~al~~~~~~~~~~~e~l  191 (194)
                      ..++.++.+++ .|-++..|+.||+++++|.-.|.-+|
T Consensus        64 i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L  101 (102)
T 1tr8_A           64 IPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL  101 (102)
T ss_dssp             CCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred             CCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence            34777888876 69999999999999999999998665

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=81.50  E-value=2.7  Score=24.89  Aligned_cols=37  Identities=24%  Similarity=0.370  Sum_probs=33.0

Q ss_pred             HHHHHHHHhc--CCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          157 EEKVQKLVEM--GFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       157 ~~~~~~~~~~--g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      ++.++.|.+|  ..+...+.-.|+..++|.++|+..|+.
T Consensus         5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~   43 (49)
T 1otr_A            5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLK   43 (49)
T ss_dssp             HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            6788889897  889999999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	194
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	1e-45
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	1e-45
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	9e-44
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-43
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	4e-43
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-42
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	8e-41
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-39
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	4e-39
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	1e-38
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	2e-38
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	3e-38
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	4e-38
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	2e-37
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	3e-37
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	9e-37
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	3e-36
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	3e-36
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	4e-36
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	9e-36
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-35
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	4e-35
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	8e-35
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	2e-34
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	2e-34
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	2e-34
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	6e-33
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	1e-32
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	9e-27
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	2e-24
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	5e-24
d1oqya1	41	a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Hum	4e-09
d1wgna_	63	a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1	8e-08
d1vg5a_	73	a.5.2.1 (A:) Rhomboid family protein At3g58460 {Th	2e-07
d1wjia_	63	a.5.2.1 (A:) Tudor domain containing protein 3, TD	6e-07
d1wiva_	73	a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress	9e-07
d2daha1	41	a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens)	8e-05
d1veja1	61	a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculu	3e-04
d2cpwa1	51	a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1	3e-04
d2g3qa1	43	a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL0	5e-04
d2dnaa1	50	a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {M	7e-04
d1veka_	84	a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress	0.001
d1whca_	64	a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus	0.001
d2bwba1	44	a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharom	0.001
d2crna1	51	a.5.2.1 (A:8-58) Suppressor of T-cell receptor sig	0.002

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score =  145 bits (367), Expect = 1e-45
 Identities = 68/144 (47%), Positives = 93/144 (64%), Gaps = 2/144 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+QKELQ+  +D   +     PV D+L H    I GP  +PY+GG F L I  P  YPF+
Sbjct: 5   RIQKELQDLGRDPP-AQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F T+++HPNI+S +G+ICLDIL+ QWSPALT+   LLS+ +LL  P PDDP    
Sbjct: 64  PPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122

Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A+ Y  D + +   AR WT+ +A
Sbjct: 123 IARIYKTDRERYNQLAREWTQKYA 146

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score =  146 bits (368), Expect = 1e-45
 Identities = 83/158 (52%), Positives = 108/158 (68%), Gaps = 12/158 (7%)

Query: 5   SRVQKELQECSKDIEA------------SGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTF 52
           +R+ KEL +  +   A             G+    V  ++    G I GP+GTPYEGG F
Sbjct: 4   ARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHF 63

Query: 53  RLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQAL 112
            LDI +P  YP+ PPKM FVTK+WHPNISSQ+GAICLDILK +WSPALT++TALLS+QA+
Sbjct: 64  TLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAM 123

Query: 113 LSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK 150
           L+ P P DPQDA VA+  +++H  F+ TA+ WTE+FAK
Sbjct: 124 LADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAK 161

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score =  141 bits (355), Expect = 9e-44
 Identities = 69/144 (47%), Positives = 93/144 (64%), Gaps = 2/144 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KE Q    +    GIK  P   N  +   +I GP  +P+EGGTF+L++ LP+ YP  
Sbjct: 6   RIIKETQRLLAE-PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 64

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            PK+ F+TK++HPN+    G ICLDILKD+WSPAL ++T LLS+QALLSAP PDDP    
Sbjct: 65  APKVRFMTKIYHPNVDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAND 123

Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           VA+Q+  +    + TAR WT  +A
Sbjct: 124 VAEQWKTNEAQAIETARAWTRLYA 147

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score =  139 bits (352), Expect = 2e-43
 Identities = 66/144 (45%), Positives = 85/144 (59%), Gaps = 2/144 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+QKEL E + D         P  DN+      I GP G+ YEGG F LDIT    YPF+
Sbjct: 6   RIQKELAEITLD-PPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 64

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK+ F T+++H NI+S  G ICLDILKD WSPALT+   LLS+ +LL+   P DP    
Sbjct: 65  PPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGS 123

Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
           +A QY+ +       AR WT+ +A
Sbjct: 124 IATQYMTNRAEHDRMARQWTKRYA 147

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  139 bits (351), Expect = 4e-43
 Identities = 82/147 (55%), Positives = 106/147 (72%), Gaps = 2/147 (1%)

Query: 5   SRVQKELQECSKDIE--ASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
            R+++E +E  K  E   + IKV  V +N   L G I GP  TPYEGG ++L+I +P+ Y
Sbjct: 7   QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 66

Query: 63  PFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQ 122
           PF PPK+ F+TK+WHPNISS +GAICLDILKDQW+ A+TL+T LLS+QALL+A  PDDPQ
Sbjct: 67  PFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQ 126

Query: 123 DAVVAQQYLKDHQTFLSTARYWTESFA 149
           DAVVA QY ++ + F  TAR W   +A
Sbjct: 127 DAVVANQYKQNPEMFKQTARLWAHVYA 153

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score =  137 bits (347), Expect = 2e-42
 Identities = 68/145 (46%), Positives = 93/145 (64%), Gaps = 2/145 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ KE ++   D    GI   P  DNL +    I GP  +PYE G F L++ LPD YP E
Sbjct: 7   RIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            PK+ F+TK++HPNI    G ICLD+LK  WSPAL ++T LLS+QALL++P P+DP    
Sbjct: 66  APKVRFLTKIYHPNIDR-LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAND 124

Query: 126 VAQQYLKDHQTFLSTARYWTESFAK 150
           VA+ ++K+ Q   + AR WT+ +AK
Sbjct: 125 VAEDWIKNEQGAKAKAREWTKLYAK 149

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score =  133 bits (335), Expect = 8e-41
 Identities = 83/145 (57%), Positives = 106/145 (73%), Gaps = 2/145 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           R+ KE+Q    D  A+ I +  VS+ ++ HL G   GP GTPYEGG F +DI +P  YPF
Sbjct: 5   RIMKEIQAVKDD-PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
           +PPKM F TKV+HPNISS +GAICLDILK+ WSP +TLK+AL+S+QALL +P P+DPQDA
Sbjct: 64  KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA 123

Query: 125 VVAQQYLKDHQTFLSTARYWTESFA 149
            VAQ YL+D ++F  TA  WT  +A
Sbjct: 124 EVAQHYLRDRESFNKTAALWTRLYA 148

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score =  131 bits (329), Expect = 1e-39
 Identities = 44/141 (31%), Positives = 80/141 (56%), Gaps = 2/141 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ ++ +   +D    G+  +P+ DN++    +I GP  TPYE GTFRL +   + YP +
Sbjct: 7   RLMRDFKRMKEDAP-PGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 65

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PP + F+++++HPN+ +  G ICLDIL+++W+P   + + L S+Q+L + P P  P +  
Sbjct: 66  PPHVKFLSEMFHPNVYAN-GEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVE 124

Query: 126 VAQQYLKDHQTFLSTARYWTE 146
            A  +      ++   +   E
Sbjct: 125 AATLFKDHKSQYVKRVKETVE 145

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score =  129 bits (325), Expect = 4e-39
 Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 16/155 (10%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
            ++K+L +  +     G     V D ++     ++ GP  T YEGG F+  +  P  YP 
Sbjct: 4   LLKKQLADMRRV-PVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQ 62

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILKD-------------QWSPALTLKTALLSVQA 111
           +PPKM F++++WHPNI  + G +C+ IL D             +W P  T++T LLSV +
Sbjct: 63  KPPKMKFISEIWHPNIDKE-GNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVIS 121

Query: 112 LLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTE 146
           +L+ P  + P +   A+   +++  F         
Sbjct: 122 MLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVR 156

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score =  128 bits (321), Expect = 1e-38
 Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 6/154 (3%)

Query: 1   MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           M   SR+++EL   + +    GI      D +  L   I G   TPYE G F+L++ +P+
Sbjct: 1   MQRASRLKRELHMLATEPP-PGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE 59

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD----QWSPALTLKTALLSVQALLSAP 116
            YPFEPP++ F+T ++HPNI S +G ICLD+LK      W P+L + T L S+Q L+S P
Sbjct: 60  RYPFEPPQIRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEP 118

Query: 117 APDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK 150
            PDDP  A ++ ++  +   FL  AR WTE  A+
Sbjct: 119 NPDDPLMADISSEFKYNKPAFLKNARQWTEKHAR 152

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score =  127 bits (320), Expect = 2e-38
 Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 3/141 (2%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
            + ++  +  ++    GI   PVS++++     I G   + ++G  F+L I     Y + 
Sbjct: 8   LLHRDFCDLKEN-NYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYA 66

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILK--DQWSPALTLKTALLSVQALLSAPAPDDPQD 123
           PP + F+T  +HPN+   +G  C+D L   ++W+   TL + LL++Q +LS P  ++P +
Sbjct: 67  PPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVN 126

Query: 124 AVVAQQYLKDHQTFLSTARYW 144
              A+  +KD   + +  R +
Sbjct: 127 LEAARILVKDESLYRTILRLF 147

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score =  127 bits (319), Expect = 3e-38
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 12/164 (7%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R + +          S  KV P SD +        GP GTPYE GT+ L + LP  YPF+
Sbjct: 4   RREMDYMRLCN----STRKVYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFK 58

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALL-SVQALLSAPAPDDPQDA 124
            P + F  ++ HPN+  +SG++CLD++   W+P   L+      +  LL  P P DP + 
Sbjct: 59  SPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNV 118

Query: 125 VVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGF 168
             A     D   F +  R    + A        +K  + +   +
Sbjct: 119 QAAHLLHADRVGFDALLREHVSTHAT------PQKALESIPEAY 156

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score =  126 bits (318), Expect = 4e-38
 Identities = 48/141 (34%), Positives = 86/141 (60%), Gaps = 2/141 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+ ++ ++  +D   +G+   P  DN++    II GP  TP+E GTF+L +   + YP +
Sbjct: 7   RLMRDFKKLQEDPP-AGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 65

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PP + F++K++HPN+ +  G+ICLDIL+++WSP   +   L S+Q+LL  P P+ P +++
Sbjct: 66  PPTVKFISKMFHPNVYA-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSL 124

Query: 126 VAQQYLKDHQTFLSTARYWTE 146
            AQ Y ++ + +    +   E
Sbjct: 125 AAQLYQENRREYEKRVQQIVE 145

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score =  124 bits (313), Expect = 2e-37
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 1/145 (0%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           RV KEL++  K      ++     D  V +   +  P   PY    F L I+ P  YPF+
Sbjct: 4   RVVKELEDLQKKPP-PYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFK 62

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PP + F TK++HPN+          I  + W P       L ++  L++ P   +P    
Sbjct: 63  PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMD 122

Query: 126 VAQQYLKDHQTFLSTARYWTESFAK 150
           +A    ++ + F   A  +T  F  
Sbjct: 123 LADLLTQNPELFRKNAEEFTLRFGV 147

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score =  124 bits (312), Expect = 3e-37
 Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 7/153 (4%)

Query: 5   SRVQKELQECSKD----IEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPD 60
           SR+ +E +   KD      A   K    + NL++    IPG  GTP+EGG F+L +   D
Sbjct: 5   SRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKD 64

Query: 61  GYPFEPPKMHFVTKVWHPNISSQSGAICLDILKD--QWSPALTLKTALLSVQALLSAPAP 118
            YP  PPK  F   ++HPN+      + L IL++   W PA+T+K  LL +Q LL+ P  
Sbjct: 65  DYPSSPPKCKFEPPLFHPNVYPSGT-VSLSILEEDKDWRPAITIKQILLGIQELLNEPNI 123

Query: 119 DDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT 151
            DP  A     Y ++   +    R   + FA +
Sbjct: 124 QDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 156

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score =  122 bits (308), Expect = 9e-37
 Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 3/144 (2%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           R+ KEL+E  K       +   V + NL+   G+I  P   PY+ G FR++I  P  YPF
Sbjct: 3   RLMKELEEIRKC-GMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPF 60

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
           +PPK+ F TK++HPNI  +       I  + W PA      + S+ AL++ P P+ P  A
Sbjct: 61  KPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRA 120

Query: 125 VVAQQYLKDHQTFLSTARYWTESF 148
            +A++Y KD + F   A  +T+ +
Sbjct: 121 DLAEEYSKDRKKFCKNAEEFTKKY 144

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score =  122 bits (306), Expect = 3e-36
 Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 2/141 (1%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
            V KE+   + D    GIKV P  ++L  L   I GP GTPY GG FR+ + L   +P  
Sbjct: 10  LVYKEVTTLTADPP-DGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 68

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PPK +F+TK++HPN+ + +G IC+++LK  W+  L ++  LL+++ LL  P P+   +  
Sbjct: 69  PPKGYFLTKIFHPNVGA-NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEE 127

Query: 126 VAQQYLKDHQTFLSTARYWTE 146
             +  L++++ + + AR  TE
Sbjct: 128 AGRLLLENYEEYAARARLLTE 148

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score =  122 bits (306), Expect = 3e-36
 Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 6/141 (4%)

Query: 6   RVQKELQECSKDIEASGIKVT-PVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           R+QK++ E +         ++    D+L++   +I  P    Y+ G F     +  GYP 
Sbjct: 7   RIQKDINELNLP---KTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPH 62

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDA 124
           +PPK+   T V+HPNI    G +CL+IL++ W P LT+ + +  +Q L   P P+DP + 
Sbjct: 63  DPPKVKCETMVYHPNID-LEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNK 121

Query: 125 VVAQQYLKDHQTFLSTARYWT 145
             A+    + + F    +   
Sbjct: 122 EAAEVLQNNRRLFEQNVQRSM 142

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score =  120 bits (302), Expect = 9e-36
 Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 3/144 (2%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+Q+EL          GI   P SDNL    G I G  GT YE   ++L +  P GYP+ 
Sbjct: 5   RLQQELMTLMMS-GDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 63

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
            P + F+T  +HPN+ +  G I LDILK++WS    ++T LLS+Q+LL  P  D P +  
Sbjct: 64  APTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTH 122

Query: 126 VAQQYLKDHQTFLSTARYWTESFA 149
            A+ + K+   F    +       
Sbjct: 123 AAELW-KNPTAFKKYLQETYSKQV 145

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score =  119 bits (299), Expect = 3e-35
 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 16/155 (10%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           R+ KELQ+  KD    GI   P S+ N+     +I GP  TPY  G F   +  P  YP 
Sbjct: 7   RLLKELQQLIKD-SPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 65

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDIL-------------KDQWSPALTLKTALLSVQA 111
            PPK+ F   + HPNI   +G +C+ IL             +++WSP  +++  LLSV +
Sbjct: 66  SPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMS 124

Query: 112 LLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTE 146
           +LS P  +   +      +  +   F    +    
Sbjct: 125 MLSEPNIESGANIDACILWRDNRPEFERQVKLSIL 159

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score =  119 bits (298), Expect = 4e-35
 Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 8/156 (5%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R++++     KD     I   P+  N++    ++ GP  TPYEGG +   +  P  +PF+
Sbjct: 5   RLKQDYLRIKKD-PVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFK 63

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDP---Q 122
           PP ++ +T       +++      D   D W+PA ++ T L  + + +    P       
Sbjct: 64  PPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIET 123

Query: 123 DAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEE 158
                +Q       F    + + E F +     VEE
Sbjct: 124 SDFTKRQLAVQSLAFNLKDKVFCELFPEV----VEE 155

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score =  116 bits (292), Expect = 8e-35
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+QKEL     +       +    +N+        G   T Y    ++L I  PD YP +
Sbjct: 2   RIQKELHNFLNN-PPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLK 60

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLS 114
           PP ++F+ K         +G ICL +L D ++P+L++   +LS+ ++LS
Sbjct: 61  PPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS 109

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score =  117 bits (294), Expect = 2e-34
 Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFE 65
           R+Q+EL+         GI   P  DNL      + GP  T YE   ++L +  P  YP++
Sbjct: 13  RLQQELRTLLMS-GDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYK 71

Query: 66  PPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAV 125
           PP + F T  WHPN+   SG ICLDILK+ W+ +  ++T LLS+Q+LL  P    P +A 
Sbjct: 72  PPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQ 130

Query: 126 VAQQYLKDHQTFLSTAR 142
            A  +  +   +     
Sbjct: 131 AADMW-SNQTEYKKVLH 146

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score =  116 bits (292), Expect = 2e-34
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 8/126 (6%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD---NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
           R+ +EL+E  K +    +      D    L   TG+I GP  T YE   + L I     Y
Sbjct: 9   RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 68

Query: 63  PFEPPKMHFVTKVWHPNISSQSGAI---CLDILKDQWSPALTLKTALLSVQALLSAPA-P 118
           P  PP + FVTK+    ++S +G +    + +L  +W  + ++K  L  ++ L+ +    
Sbjct: 69  PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENM 127

Query: 119 DDPQDA 124
             PQ  
Sbjct: 128 KLPQPP 133

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (290), Expect = 2e-34
 Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 4/112 (3%)

Query: 6   RVQKELQECSKD-IEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
           R+QKEL     D      +    V +++      + G  GT YEG  F+L       YPF
Sbjct: 7   RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 66

Query: 65  EPPKMHFVTKVW--HPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLS 114
           + P++ F  +    HP++ S +G ICL IL + WSPAL++++  LS+ ++LS
Sbjct: 67  DSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISMLS 117

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score =  112 bits (281), Expect = 6e-33
 Identities = 41/125 (32%), Positives = 70/125 (56%), Gaps = 16/125 (12%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSD-NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPF 64
            ++++L E +K+    G     + D +L     +I GP  T YEGG F+  +T P  YP 
Sbjct: 3   LLRRQLAELNKN-PVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPL 61

Query: 65  EPPKMHFVTKVWHPNISSQSGAICLDIL-------------KDQWSPALTLKTALLSVQA 111
            PPKM F+T++WHPN+  ++G +C+ IL             +++W P  T++T ++SV +
Sbjct: 62  RPPKMKFITEIWHPNV-DKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVIS 120

Query: 112 LLSAP 116
           +L+ P
Sbjct: 121 MLADP 125

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score =  112 bits (280), Expect = 1e-32
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 6   RVQKELQECSKDIEASGIKVTPVSDN---LVHLTGIIPGPVGTPYEGGTFRLDITLPDGY 62
           R+ +EL++  K              +   +    G I GP  + +E   + L I     Y
Sbjct: 8   RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 67

Query: 63  PFEPPKMHFVTKVWHPNISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDP 121
           P  PPK+ F++K+  P ++  +G +  D      W  A T++T LL ++  ++ PA    
Sbjct: 68  PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKL 127

Query: 122 Q 122
           +
Sbjct: 128 R 128

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.3 bits (242), Expect = 9e-27
 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 10/125 (8%)

Query: 3   DFSRVQKELQECSKDIEA--SGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRL--DITL 58
                 +E        +     +     +D        + G +  PY G T+ +   + L
Sbjct: 15  YRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWL 74

Query: 59  PDGYPFEPPKMHFVTK-----VWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALL 113
            D YP+ PP                ++ + +G I L  L +   P   L   +  +  + 
Sbjct: 75  LDTYPYNPPICFVKPTSSMTIKTGKHVDA-NGKIYLPYLHEWKHPQSDLLGLIQVMIVVF 133

Query: 114 SAPAP 118
               P
Sbjct: 134 GDEPP 138

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.2 bits (228), Expect = 2e-24
 Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 16/154 (10%)

Query: 6   RVQKELQECSKD--IEASGIKVTPVSDNLVHLTGIIPG-PVGTPYEGG-----------T 51
           R+ KEL++  +    +     V  ++D+L      +      +P                
Sbjct: 8   RLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEY 67

Query: 52  FRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDIL-KDQWSPALTLKTALLSVQ 110
             L+ +  D +PF+PP +  V  V         GA+C+++L K  WS A ++++ ++ + 
Sbjct: 68  ILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQIN 127

Query: 111 ALLSAPAPDDPQDAVVAQ-QYLKDHQTFLSTARY 143
           A L          A   Q    +  Q++ S  + 
Sbjct: 128 ATLVKGKARVQFGANKNQYNLARAQQSYNSIVQI 161

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.4 bits (224), Expect = 5e-24
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 19/105 (18%)

Query: 29  SDNLVHLTGIIPGPVGTPYEGGT---FRLDITLPDGYPFEPPKMHFVTKVW--------- 76
              L+ + G I     T  +G +     + + +P  YP +PP +    + +         
Sbjct: 52  PQLLLSIYGTIS----TGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSL 107

Query: 77  --HPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD 119
                I S +G I L IL      A+ L   +  + +LL  P  D
Sbjct: 108 PIQEYIDS-NGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQD 151

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (115), Expect = 4e-09
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193
           E  + +++ MG+   +V + L     + + A+E LL+
Sbjct: 5   ETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 41

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 8e-08
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193
            + V+ +V MG+    V   ++  G +    L+ L +
Sbjct: 20  RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA 56

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.5 bits (105), Expect = 2e-07
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS 194
           EE++QKLV MGF  +QV   L     D  +A+E L+S 
Sbjct: 30  EEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQ 67

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (101), Expect = 6e-07
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193
           E+ ++ + EMGF +   R  L   G +   AL  LL+
Sbjct: 10  EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLT 46

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.9 bits (101), Expect = 9e-07
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS 193
           +  V  L+  GF E   R  L+  GGD   A + + +
Sbjct: 30  QSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFN 66

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (85), Expect = 8e-05
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 157 EEKVQKLVEMGFP-ESQVRSTLEIVGGDENMALEKLLSS 194
           + ++++L  MGF         L   GGD + A+EKL  S
Sbjct: 3   QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQS 41

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 61

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (82), Expect = 3e-04
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 157 EEKVQKLVEMGFPESQV-RSTLEIVGGDENMALEKLLSS 194
           ++++++L  +GF         L    GD + A+E LL +
Sbjct: 23  QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGA 61

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 3e-04
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 157 EEKVQKLVEMGFPESQVRSTLEIVGG-DENMALEKLLS 193
              +  L+ MGFP ++ +  L   GG     A + L S
Sbjct: 13  GSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFS 50

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Length = 43

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 34.5 bits (79), Expect = 5e-04
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLL 192
              V++L  MGF E +  + LE    D   A   LL
Sbjct: 5   SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLL 40

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (79), Expect = 7e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 157 EEKVQKLVEMGFPESQV-RSTLEIVGGDENMALEKLLSS 194
            ++++ L  MGF         L    GD N A+ KL SS
Sbjct: 9   SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS 47

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 84

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 157 EEKVQKLVEMGFPESQVRSTLEIVG-GDENMALEKLLS 193
           EE V +LV MGF +   +             A+  LLS
Sbjct: 30  EEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLS 67

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 64

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 152 SSLGVEEKVQKLVEMGFPESQVRSTLEIVGG-DENMALEKLLS 193
           SS      ++ L+EMGFP  +    L + G      A++ L+ 
Sbjct: 5   SSGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLME 47

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 44

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.4 bits (77), Expect = 0.001
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 157 EEKVQKLVEMGFPESQV-RSTLEIVGGDENMALEKLLS 193
           E ++++L +MGF +     + L   GG    AL+ LL+
Sbjct: 6   EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 43

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.002
 Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 1/38 (2%)

Query: 157 EEKVQKLVEMGFPESQVRSTLEIVG-GDENMALEKLLS 193
              ++ L+ MGFP       L   G      AL  L  
Sbjct: 3   PSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHD 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	100.0
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.81
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.75
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	98.76
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	98.74
d3e46a1	42	Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal	98.38
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	98.34
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	98.31
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	98.27
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	98.23
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	97.93
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	97.76
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.66
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	97.38
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	97.24
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	97.19
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	97.01
d1veja1	61	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	96.72
d1z96a1	38	UBA-domain protein mud1 {Schizosaccharomyces pombe	96.48
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	95.74
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	95.68
d1ttea1	55	Ubiquitin-protein ligase ubc1 {Baker's yeast (Sacc	94.64
d1oqya2	44	DNA repair protein Hhr23a {Human (Homo sapiens) [T	94.54
d1vega_	83	NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculu	94.35
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	94.09
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	93.79
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	93.71
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	93.27
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	92.6
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	92.22
d2dkla1	72	Trinucleotide repeat containing 6c protein, TNRC6C	91.14
d1v92a_	46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	90.83
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	87.8
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	83.15

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=1.4e-49  Score=302.18  Aligned_cols=149  Identities=41%  Similarity=0.798  Sum_probs=144.6

Q ss_pred             CchHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            1 MIDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         1 m~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      |++.+||++|+++|.++ ++.|+++.+.++|++.|+++|.||+||||+||+|++.|.||++||++||+|+|.|++|||||
T Consensus         1 m~~~~Rl~kE~~~l~~~-~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV   79 (154)
T d1yh2a1           1 MQRASRLKRELHMLATE-PPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI   79 (154)
T ss_dssp             HHHHHHHHHHHHHHHHS-CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             CcHHHHHHHHHHHHHHC-cCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCc
Confidence            89999999999999999 56999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccccccc----CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412           81 SSQSGAICLDILK----DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT  151 (194)
Q Consensus        81 ~~~~G~icl~~l~----~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~  151 (194)
                      + .+|.||++++.    ++|+|++++.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+||++||+.
T Consensus        80 ~-~~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~k~a~~  153 (154)
T d1yh2a1          80 D-SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ  153 (154)
T ss_dssp             C-TTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             C-CCCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence            9 58999999995    6899999999999999999999999999999999999999999999999999999985

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=2.6e-49  Score=298.92  Aligned_cols=147  Identities=45%  Similarity=0.779  Sum_probs=143.1

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      ++.|||++|+++|+++ ++.|+++.+.++|++.|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||||+
T Consensus         2 ~~~kRi~~E~~~l~~~-~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~   80 (148)
T d1y6la_           2 TSAKRIQKELAEITLD-PPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNIN   80 (148)
T ss_dssp             HHHHHHHHHHHHHHHS-CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHhhC-CCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceEC
Confidence            4789999999999999 579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                      . +|.||++++.++|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus        81 ~-~G~iCl~~l~~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~k~A~  148 (148)
T d1y6la_          81 S-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  148 (148)
T ss_dssp             T-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             C-CCeEEEEecCCcCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHHHHCHHHHHHHHHHHHHHhCC
Confidence            5 8999999999999999999999999999999999999999999999999999999999999999984

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=5.3e-49  Score=296.79  Aligned_cols=147  Identities=46%  Similarity=0.883  Sum_probs=143.1

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      .|+|||++|+++|+++ ++.|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         1 ~a~kRL~~E~~~l~~~-~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   79 (147)
T d1z2ua1           1 MALKRIQKELQDLGRD-PPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   79 (147)
T ss_dssp             HHHHHHHHHHHHHHHS-CCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             CHHHHHHHHHHHHHhC-CCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeEC
Confidence            3789999999999999 579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                       .+|.||++++.+.|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++|++|+++||+
T Consensus        80 -~~G~iCl~~l~~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~k~A~  147 (147)
T d1z2ua1          80 -SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM  147 (147)
T ss_dssp             -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             -CCCCEeeehhcccCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhCC
Confidence             59999999999999999999999999999999999999999999999999999999999999999995

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=8.9e-49  Score=296.25  Aligned_cols=148  Identities=55%  Similarity=0.945  Sum_probs=142.4

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEe-cCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTP-VSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      |+.|||++|+++|+++ ++.|+++.+ .++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||||
T Consensus         1 s~~kRL~~El~~l~~~-~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI   79 (149)
T d1fzya_           1 SRAKRIMKEIQAVKDD-PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI   79 (149)
T ss_dssp             CHHHHHHHHHHHHHTC-GGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             CHHHHHHHHHHHHHHC-CCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCcc
Confidence            6899999999999999 569999986 46789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                      +..+|.+|++++.++|+|++||.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||.
T Consensus        80 ~~~~~~~~~~~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~k~A~  149 (149)
T d1fzya_          80 SSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             CTTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             cCCcceeechhhcccCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            9778999999999999999999999999999999999999999999999999999999999999999994

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=6.6e-49  Score=296.94  Aligned_cols=145  Identities=48%  Similarity=0.849  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccCC
Q 029412            4 FSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQ   83 (194)
Q Consensus         4 ~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~   83 (194)
                      .|||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||+ .
T Consensus         4 ~kRl~kEl~~l~~~-~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~-~   81 (149)
T d1j7db_           4 PRRIIKETQRLLAE-PVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD-K   81 (149)
T ss_dssp             CHHHHHHHHHHTTS-CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBC-T
T ss_pred             cHHHHHHHHHHHhC-CCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceEC-C
Confidence            48999999999999 569999999999999999999999999999999999999999999999999999999999999 5


Q ss_pred             CcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           84 SGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        84 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                      +|.||++++.+.|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||+
T Consensus        82 ~G~icl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~ar~~~~kyA~  148 (149)
T d1j7db_          82 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM  148 (149)
T ss_dssp             TCBBCCGGGTTSCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             CCcEehHHhcCCCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999997

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=6.3e-49  Score=297.92  Aligned_cols=148  Identities=46%  Similarity=0.818  Sum_probs=143.8

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      |+.|||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         3 ~~~rRl~~E~~~l~~~-~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~   81 (152)
T d1jata_           3 SLPKRIIKETEKLVSD-PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID   81 (152)
T ss_dssp             SCCHHHHHHHHHHHHS-CCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHhC-CCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcCC
Confidence            4679999999999999 579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT  151 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~  151 (194)
                       .+|.+|++++..+|+|+++|.+||.+|++||.+|++++|+|.+||++|.+|+++|.++||+||++||+.
T Consensus        82 -~~G~icl~~~~~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~~~d~~~f~~~~r~~~~~~a~~  150 (152)
T d1jata_          82 -RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK  150 (152)
T ss_dssp             -TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred             -CCCCeeeccccccCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence             489999999999999999999999999999999999999999999999999999999999999999985

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-48  Score=295.75  Aligned_cols=148  Identities=55%  Similarity=0.987  Sum_probs=142.2

Q ss_pred             hHHHHHHHHHHHHhcC--CCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            3 DFSRVQKELQECSKDI--EASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~--~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      +.+||++|++++.++.  ...++++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus         5 a~~Rl~kE~~~l~~~~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni   84 (154)
T d2bepa1           5 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI   84 (154)
T ss_dssp             HHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             HHHHHHHHHHHHHHCCCCCCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCCCCCe
Confidence            6899999999998753  24689999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                      ++.+|.+|++++.+.|+|++||.+||.+|+++|.+|++++|+|.+||++|++|++.|.++||+||++||+
T Consensus        85 ~~~~g~ic~~~~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~t~k~A~  154 (154)
T d2bepa1          85 SSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG  154 (154)
T ss_dssp             CTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             eCCCCccccccccccCCCcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            9779999999999999999999999999999999999999999999999999999999999999999995

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=2.3e-48  Score=294.47  Aligned_cols=146  Identities=35%  Similarity=0.678  Sum_probs=141.5

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      +++|||++|+++|+++ ++.|+++.|.++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|++|||||+
T Consensus         6 ~~~kRl~kEl~~l~~~-~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~   84 (151)
T d1zdna1           6 HIIRLVYKEVTTLTAD-PPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG   84 (151)
T ss_dssp             HHHHHHHHHHHHHHHS-CCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHHhC-CCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCCceec
Confidence            3689999999999999 568999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFA  149 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a  149 (194)
                       .+|.||++++.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++|.
T Consensus        85 -~~G~ic~~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~ar~~~~~~g  151 (151)
T d1zdna1          85 -ANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  151 (151)
T ss_dssp             -TTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             -CCCCcccccccccCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence             5899999999999999999999999999999999999999999999999999999999999999984

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=6e-48  Score=293.60  Aligned_cols=148  Identities=36%  Similarity=0.681  Sum_probs=141.0

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCC-----CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCccccccee
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVW   76 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~-----~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   76 (194)
                      .|++||++|+++|+++ ++.|+++.|.++     |+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|
T Consensus         2 ~a~~Rl~~E~~~~~~~-~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (156)
T d2uyza1           2 IALSRLAQERKAWRKD-HPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF   80 (156)
T ss_dssp             HHHHHHHHHHHHHHHS-CCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             hHHHHHHHHHHHHHHC-CCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeeccccc
Confidence            4789999999999999 568999998754     8999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCccccccccc--CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Q 029412           77 HPNISSQSGAICLDILK--DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKT  151 (194)
Q Consensus        77 Hpnv~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~  151 (194)
                      ||||+ .+|.+|+++|.  ++|+|++||.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus        81 HPnV~-~~G~icl~~l~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~k~A~~  156 (156)
T d2uyza1          81 HPNVY-PSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS  156 (156)
T ss_dssp             STTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCCC
T ss_pred             ccccc-ccceeeecccCcccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHCCC
Confidence            99998 58999999995  4899999999999999999999999999999999999999999999999999999974

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=1.1e-47  Score=290.12  Aligned_cols=145  Identities=33%  Similarity=0.729  Sum_probs=140.4

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      .|.|||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||+
T Consensus         3 pa~rRl~~E~~~l~~~-~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~   81 (149)
T d1z3da1           3 PSRRRLMRDFKKLQED-PPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVY   81 (149)
T ss_dssp             HHHHHHHHHHHHHHHS-CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHhhC-CCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccceeEc
Confidence            3689999999999998 569999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHH
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESF  148 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~  148 (194)
                      . +|.||++++.+.|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++.
T Consensus        82 ~-~G~iCl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~ks  147 (149)
T d1z3da1          82 A-DGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS  147 (149)
T ss_dssp             T-TCBBCCGGGTTSCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             C-CCCEEeccccccCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 89999999999999999999999999999999999999999999999999999999999999874

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=8.7e-48  Score=294.00  Aligned_cols=148  Identities=55%  Similarity=1.022  Sum_probs=139.5

Q ss_pred             hHHHHHHHHHHHHhc------------CCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcc
Q 029412            3 DFSRVQKELQECSKD------------IEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMH   70 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~------------~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   70 (194)
                      +.+||++|+++|++.            ....|+++.+.++|+++|+++|.||+||||+||+|+|+|.||++||++||+|+
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~   81 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK   81 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEE
Confidence            579999999999772            12468999999999999999999999999999999999999999999999999


Q ss_pred             cccceecccccCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           71 FVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        71 f~t~i~Hpnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                      |.|++|||||+..+|.||++++.+.|+|++||.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||+
T Consensus        82 F~t~i~HPni~~~~G~icl~~l~~~W~p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~~~d~~~y~~~v~~~t~~~a~  161 (161)
T d2f4za1          82 FVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAK  161 (161)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ecCCCCCCceECCCCCeecCcccccCCCcccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhC
Confidence            99999999998789999999999999999999999999999999999999999999999999999999999999999995

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=7.4e-48  Score=290.13  Aligned_cols=146  Identities=34%  Similarity=0.590  Sum_probs=140.6

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      .+.|||++|+++|+++ ++.|+++.+.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         1 p~~kRl~~El~~l~~~-~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   79 (146)
T d1i7ka_           1 PVGKRLQQELMTLMMS-GDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD   79 (146)
T ss_dssp             CHHHHHHHHHHHHHHH-CCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC
T ss_pred             CHHHHHHHHHHHHhhC-CCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCC
Confidence            3679999999999999 568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                       .+|.||++++.++|+|++|+.+||.+|+++|.+|++++|+|.+||++|+ |+++|.++|+++++|||.
T Consensus        80 -~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~~-n~~~f~k~~~~~~~K~~~  146 (146)
T d1i7ka_          80 -TQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQVT  146 (146)
T ss_dssp             -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHTT-SHHHHHHHHHHHHHTTCC
T ss_pred             -CCCccccccccccCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHhh-CHHHHHHHHHHHHHccCC
Confidence             4899999999999999999999999999999999999999999999995 999999999999999984

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=2.3e-47  Score=289.52  Aligned_cols=147  Identities=30%  Similarity=0.677  Sum_probs=142.4

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      .|.|||++|+++|+++ ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         3 ~A~kRl~~El~~l~~~-~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~   81 (153)
T d1ayza_           3 PARRRLMRDFKRMKED-APPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY   81 (153)
T ss_dssp             HHHHHHHHHHHHHHHS-CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHHHhHC-CCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCccCCC
Confidence            3789999999999999 569999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAK  150 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~  150 (194)
                       .+|.||++++.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|++++++
T Consensus        82 -~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~~~~~~~f~~~~~~~~~ks~~  149 (153)
T d1ayza_          82 -ANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE  149 (153)
T ss_dssp             -TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCccccccccccCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             58999999999999999999999999999999999999999999999999999999999999999874

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=4.3e-47  Score=291.17  Aligned_cols=147  Identities=31%  Similarity=0.589  Sum_probs=139.6

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEec-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPV-SDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      +|.|||++|+++|+++ ++.|+++.|. ++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|++|||||
T Consensus         3 ~a~kRL~~E~~~l~~~-~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   81 (164)
T d2ucza_           3 TAQKRLLKELQQLIKD-SPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI   81 (164)
T ss_dssp             HHHHHHHHHHHHHHHS-CCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTB
T ss_pred             HHHHHHHHHHHHHhhC-CCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceeceE
Confidence            4789999999999999 5689999985 5799999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccccccc-------------CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Q 029412           81 SSQSGAICLDILK-------------DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTES  147 (194)
Q Consensus        81 ~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~  147 (194)
                      + .+|.||+++|.             +.|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.+
T Consensus        82 ~-~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~~r~~~~k  160 (164)
T d2ucza_          82 Y-PNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILK  160 (164)
T ss_dssp             C-TTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             c-CCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            8 48999999984             469999999999999999999999999999999999999999999999999999


Q ss_pred             HcC
Q 029412          148 FAK  150 (194)
Q Consensus       148 ~a~  150 (194)
                      +++
T Consensus       161 ~~~  163 (164)
T d2ucza_         161 SLG  163 (164)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            875

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=6.6e-47  Score=286.24  Aligned_cols=147  Identities=28%  Similarity=0.543  Sum_probs=138.5

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEec-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPV-SDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      |.+||++|+++|+++ ++.|+++.+. ++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus         1 a~~Rl~kE~~~l~~~-~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~   78 (150)
T d1wzva1           1 ASMRVVKELEDLQKK-PPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD   78 (150)
T ss_dssp             CHHHHHHHHHHHHHS-CCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             CHHHHHHHHHHHHHC-CCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceEC
Confidence            579999999999999 5689998876 56899999876 89999999999999999999999999999999999999999


Q ss_pred             CCCccccccccc-CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412           82 SQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS  152 (194)
Q Consensus        82 ~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~  152 (194)
                       .+|.||+++|. ++|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||...
T Consensus        79 -~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~a~~~~~kya~~~  149 (150)
T d1wzva1          79 -ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDR  149 (150)
T ss_dssp             -TTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEEC
T ss_pred             -CCCCcccccccccCCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhcccC
Confidence             59999999995 68999999999999999999999999999999999999999999999999999999753

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=1.5e-46  Score=283.46  Aligned_cols=141  Identities=26%  Similarity=0.592  Sum_probs=136.3

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS   82 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   82 (194)
                      |.+||++|+++++++ ++.|+++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||++
T Consensus         5 a~~~L~kE~~~l~~~-~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~   83 (148)
T d1yrva1           5 AYLLLHRDFCDLKEN-NYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDP   83 (148)
T ss_dssp             HHHHHHHHHHHHHHH-CCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCT
T ss_pred             HHHHHHHHHHHHHHC-CCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccCceec
Confidence            789999999999999 5689999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCccccccccc--CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHH
Q 029412           83 QSGAICLDILK--DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYW  144 (194)
Q Consensus        83 ~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~  144 (194)
                      .+|.||+++|.  ++|+|++||.+||.+|+++|.+|+.++|+|.+||++|++|+++|.++||.+
T Consensus        84 ~~G~iC~~~l~~~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~ly~~~~~~f~~~~r~~  147 (148)
T d1yrva1          84 HTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF  147 (148)
T ss_dssp             TTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CcccccccccCchhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHhh
Confidence            88999999985  689999999999999999999999999999999999999999999999974

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=9.9e-46  Score=281.25  Aligned_cols=144  Identities=34%  Similarity=0.644  Sum_probs=137.3

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      +..|||++|+++|+++ ++.|+++.|.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         9 ~~~kRl~kEl~~l~~~-~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   87 (156)
T d2e2ca_           9 SVSKRLQQELRTLLMS-GDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD   87 (156)
T ss_dssp             CHHHHHHHHHHHHHHH-CCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHhHC-CCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcCCCCC
Confidence            5689999999999999 569999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHH
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESF  148 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~  148 (194)
                       .+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|+ |..+|.++|++.+++.
T Consensus        88 -~~G~icl~~l~~~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~~aa~l~~-n~~~y~k~~~e~~~~~  152 (156)
T d2e2ca_          88 -QSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHEKYKTA  152 (156)
T ss_dssp             -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred             -CCCCccccccCCCCCCcccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-CHHHHHHHHHHHHHHH
Confidence             5999999999999999999999999999999999999999999999996 6678999999887764

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=1e-45  Score=282.66  Aligned_cols=146  Identities=29%  Similarity=0.600  Sum_probs=137.6

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEec-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPV-SDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      +..||++|+++|+++ ++.|+++.+. ++|++.|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||||+
T Consensus         1 ~~~~L~kE~~~l~~~-~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~   79 (161)
T d1pzva_           1 SSLLLKKQLADMRRV-PVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNID   79 (161)
T ss_dssp             CHHHHHHHHHHHHHS-CCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBC
T ss_pred             CChHHHHHHHHHHhC-CCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccC
Confidence            357999999999999 5699999986 46799999999999999999999999999999999999999999999999998


Q ss_pred             CCCcccccccccC-------------CCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHH
Q 029412           82 SQSGAICLDILKD-------------QWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESF  148 (194)
Q Consensus        82 ~~~G~icl~~l~~-------------~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~  148 (194)
                       .+|.||+++|.+             +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|++++
T Consensus        80 -~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~v~k~  158 (161)
T d1pzva_          80 -KEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRS  158 (161)
T ss_dssp             -TTSBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             -CCCccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence             589999999943             599999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 029412          149 AK  150 (194)
Q Consensus       149 a~  150 (194)
                      ..
T Consensus       159 ~e  160 (161)
T d1pzva_         159 QE  160 (161)
T ss_dssp             TT
T ss_pred             hc
Confidence            64

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=6.6e-46  Score=278.91  Aligned_cols=142  Identities=37%  Similarity=0.747  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEec-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412            4 FSRVQKELQECSKDIEASGIKVTPV-SDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS   82 (194)
Q Consensus         4 ~~RL~~E~~~l~~~~~~~~i~v~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   82 (194)
                      .|||++|+++|.++ ++.|+.+.+. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+ 
T Consensus         1 ~rRl~kEl~~l~~~-~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~-   77 (144)
T d1c4zd_           1 SRRLMKELEEIRKC-GMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID-   77 (144)
T ss_dssp             CTTHHHHHTTCSSS-CCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC-
T ss_pred             CHHHHHHHHHHHhC-CCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCc-
Confidence            38999999999998 5689887764 67999999998 99999999999999999999999999999999999999999 


Q ss_pred             CCccccccccc-CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHH
Q 029412           83 QSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESF  148 (194)
Q Consensus        83 ~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~  148 (194)
                      .+|.||+++|. ++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++|
T Consensus        78 ~~G~icl~~l~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~ky  144 (144)
T d1c4zd_          78 EKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY  144 (144)
T ss_dssp             TTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC
T ss_pred             cCCccccccccCCCCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            59999999997 5799999999999999999999999999999999999999999999999999986

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=4.3e-44  Score=272.58  Aligned_cols=145  Identities=31%  Similarity=0.609  Sum_probs=134.5

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccC
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISS   82 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   82 (194)
                      +.|||++|+++|.++.  .  .+.+ ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.
T Consensus         1 ~~rr~~~e~~~l~~~~--~--~~~~-~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~   75 (158)
T d1yf9a1           1 SNRRREMDYMRLCNST--R--KVYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE   75 (158)
T ss_dssp             CCHHHHHHHHHHHSSS--S--CEEE-CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred             CchHHHHHHHHHhcCC--C--cCCC-CCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCcc
Confidence            4699999999999883  2  2555 479999999999999999999999999999999999999999999999999997


Q ss_pred             CCcccccccccCCCCcccCHHHHHHH-HHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412           83 QSGAICLDILKDQWSPALTLKTALLS-VQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS  152 (194)
Q Consensus        83 ~~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~  152 (194)
                      .+|.||++++.++|+|++++.++|.. |+.|+.+|++++|+|.+||++|++|+++|.++||+|+++||+..
T Consensus        76 ~~G~vcl~il~~~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l~~~n~~~f~~~~k~~~~k~a~~~  146 (158)
T d1yf9a1          76 RSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATPQ  146 (158)
T ss_dssp             TTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCHH
T ss_pred             CcccccccccccccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHHCChh
Confidence            78999999999999999999999965 67789999999999999999999999999999999999999763

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=1.7e-43  Score=269.16  Aligned_cols=146  Identities=28%  Similarity=0.534  Sum_probs=134.3

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEe-cCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTP-VSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNI   80 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   80 (194)
                      +|.+||++|+++|++.   +++.+.. .++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus         3 ~a~~Rl~kEl~~l~~~---~~~~i~~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnv   78 (157)
T d1y8xa1           3 AAQLRIQKDINELNLP---KTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI   78 (157)
T ss_dssp             HHHHHHHHHHHTCCCC---TTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             HHHHHHHHHHHHhCCC---CCCcEEEcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCccc
Confidence            4789999999999755   3555554 568999999999 8999999999999999999999999999999999999999


Q ss_pred             cCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Q 029412           81 SSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTS  152 (194)
Q Consensus        81 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~a~~~~~~~a~~~  152 (194)
                      +. +|.||++++.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|++.++.++
T Consensus        79 ~~-~G~ic~~~~~~~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~~~~~~~f~~~v~~~~~~~~~~~  149 (157)
T d1y8xa1          79 DL-EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGS  149 (157)
T ss_dssp             CT-TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSEEETT
T ss_pred             cc-cceeeeeecccCCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHHHHHCHHHHHHHHHHHHcCCCcCC
Confidence            95 899999999999999999999999999999999999999999999999999999999999998665443

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=247.81  Aligned_cols=147  Identities=22%  Similarity=0.407  Sum_probs=123.4

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceeccccc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNIS   81 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   81 (194)
                      +|.|||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|||++
T Consensus         1 tA~kRl~kE~~~l~~~-p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~   79 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKD-PVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN   79 (157)
T ss_dssp             CHHHHHHHHHHHHHHS-CCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTT
T ss_pred             CHHHHHHHHHHHHHhC-CCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCC
Confidence            5899999999999999 579999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCc--h-hHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 029412           82 SQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDP--Q-DAVVAQQYLKDHQTFLSTARYWTESFA  149 (194)
Q Consensus        82 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p--~-n~~a~~~~~~~~~~f~~~a~~~~~~~a  149 (194)
                      ...+..|+++..++|+|++||.+||.+|++||.+|+++..  . +..+.+.|..+...|..+++.|+++|.
T Consensus        80 g~~~~~~l~~~~~~Wsp~~ti~~il~~i~~ll~~p~p~~~~~~~~~~~~~~~~~~~~~f~~k~~~~~~~~~  150 (157)
T d2f4wa1          80 TRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFP  150 (157)
T ss_dssp             SCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHTCHHHHHHCH
T ss_pred             CCeeeeeccccCCCCCccCcHHHHHHHHHHHccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3222233445568999999999999999999999988653  3 344456788899999999999999874

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-39  Score=232.85  Aligned_cols=110  Identities=35%  Similarity=0.661  Sum_probs=102.6

Q ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEe--cCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccce--ecc
Q 029412            3 DFSRVQKELQECSKDIEASGIKVTP--VSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKV--WHP   78 (194)
Q Consensus         3 ~~~RL~~E~~~l~~~~~~~~i~v~~--~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i--~Hp   78 (194)
                      +.|||++|+++|+++ ++.|+++.+  .++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++  |||
T Consensus         4 ~~kRL~kEl~~l~~~-~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hp   82 (117)
T d2a7la1           4 MQKRLQKELLALQND-PPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHP   82 (117)
T ss_dssp             SCHHHHHHHHHHHHS-CCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBT
T ss_pred             HHHHHHHHHHHHhhC-CCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCccccc
Confidence            479999999999999 568888774  467999999999999999999999999999999999999999999976  999


Q ss_pred             cccCCCcccccccccCCCCcccCHHHHHHHHHHhhC
Q 029412           79 NISSQSGAICLDILKDQWSPALTLKTALLSVQALLS  114 (194)
Q Consensus        79 nv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~  114 (194)
                      ||+ .+|+||+++|.++|+|++||++||.+|++||+
T Consensus        83 nv~-~~G~iCl~~l~~~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          83 HVY-SNGHICLSILTEDWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             TBC-TTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             cCc-CCCeEEeecCcCCCCCcCcHHHHHHHHHHHhC
Confidence            998 49999999999999999999999999999984

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=4.4e-38  Score=225.42  Aligned_cols=107  Identities=30%  Similarity=0.558  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHhcCCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccce-ecccccCCC
Q 029412            6 RVQKELQECSKDIEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKV-WHPNISSQS   84 (194)
Q Consensus         6 RL~~E~~~l~~~~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~~~~   84 (194)
                      ||++|+++++++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ +||||+ .+
T Consensus         2 Rl~kEl~~l~~~-~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~-~~   79 (109)
T d2fo3a1           2 RIQKELHNFLNN-PPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY-SN   79 (109)
T ss_dssp             HHHHHHHHHHHS-CCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBC-TT
T ss_pred             HHHHHHHHHHhC-CCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceEC-CC
Confidence            999999999999 568999999999999999999999999999999999999999999999999999985 899998 59


Q ss_pred             cccccccccCCCCcccCHHHHHHHHHHhhC
Q 029412           85 GAICLDILKDQWSPALTLKTALLSVQALLS  114 (194)
Q Consensus        85 G~icl~~l~~~W~p~~~i~~il~~i~~ll~  114 (194)
                      |+||+++|.++|+|++|+++||.+|++||+
T Consensus        80 G~iCl~il~~~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          80 GDICLSLLGDDYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             SBBCCGGGTTTCCTTCCHHHHHHHHHHHHC
T ss_pred             CeEEeecccCCCCccCCHHHHHHHHHHHhC
Confidence            999999999999999999999999999985

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=6e-38  Score=229.97  Aligned_cols=110  Identities=36%  Similarity=0.835  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEec-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecccccCC
Q 029412            5 SRVQKELQECSKDIEASGIKVTPV-SDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQ   83 (194)
Q Consensus         5 ~RL~~E~~~l~~~~~~~~i~v~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~   83 (194)
                      -||+||+++|+++ ++.|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus         2 ~~L~kEl~~l~~~-~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~-~   79 (125)
T d2awfa1           2 LLLRRQLAELNKN-PVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD-K   79 (125)
T ss_dssp             HHHHHHHHHHHHS-CCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC-T
T ss_pred             chHHHHHHHHHhC-CCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccC-C
Confidence            4899999999999 5699999874 56899999999999999999999999999999999999999999999999999 5


Q ss_pred             Cccccccccc-------------CCCCcccCHHHHHHHHHHhhCCC
Q 029412           84 SGAICLDILK-------------DQWSPALTLKTALLSVQALLSAP  116 (194)
Q Consensus        84 ~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p  116 (194)
                      +|.||+++|.             ++|+|++|+++||.+|++||.+|
T Consensus        80 ~G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          80 NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             TCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             CCEEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHhhCc
Confidence            9999999984             57999999999999999999987

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=100.00  E-value=9e-39  Score=237.07  Aligned_cols=126  Identities=23%  Similarity=0.395  Sum_probs=109.6

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEecCC---CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceecc
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPVSD---NLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWHP   78 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~~~---~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   78 (194)
                      .+.+||.+|+++++++.++.++++.+.++   |+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||
T Consensus         4 p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~Hp   83 (136)
T d1jatb_           4 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLP   83 (136)
T ss_dssp             CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred             chHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEecccccc
Confidence            47899999999999986667787776543   499999999999999999999999999999999999999999999999


Q ss_pred             cccCCCccccccccc-CCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHH
Q 029412           79 NISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAPDDPQDAVVA  127 (194)
Q Consensus        79 nv~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~  127 (194)
                      ||+..+|.||++++. ++|+|++||.+||.+|+++|.+|+.....+++++
T Consensus        84 nV~~~~G~icl~~l~~~~Wsp~~ti~~IL~~i~~lL~~P~n~~~~q~~~g  133 (136)
T d1jatb_          84 CVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEG  133 (136)
T ss_dssp             TBCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTT
T ss_pred             ccccCCCeEECCCCcccCcCccCcHHHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            999878999999885 7899999999999999999999876665555443

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=100.00  E-value=4e-37  Score=229.15  Aligned_cols=124  Identities=27%  Similarity=0.395  Sum_probs=110.0

Q ss_pred             chHHHHHHHHHHHHhcCCCCCeEEEec----CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCCcccccceec
Q 029412            2 IDFSRVQKELQECSKDIEASGIKVTPV----SDNLVHLTGIIPGPVGTPYEGGTFRLDITLPDGYPFEPPKMHFVTKVWH   77 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~~~~i~v~~~----~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   77 (194)
                      .|.+||++|+++++++. +.++.+.+.    ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         5 ~r~~RL~kEl~~l~k~~-~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~H   83 (139)
T d2a4da1           5 PRNFRLLEELEEGQKGV-GDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM   83 (139)
T ss_dssp             HHHHHHHHHHHHHHSCC-TTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             chhHHHHHHHHHHhhCC-CCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence            47899999999999995 455544432    3479999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCccccccccc--CCCCcccCHHHHHHHHHHhhCCC-CCCCchhHHH
Q 029412           78 PNISSQSGAICLDILK--DQWSPALTLKTALLSVQALLSAP-APDDPQDAVV  126 (194)
Q Consensus        78 pnv~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~p-~~~~p~n~~a  126 (194)
                      |||+..+|.+|++.+.  ++|+|++||++||.+|+++|.+| |.++|.|+|.
T Consensus        84 pnV~~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL~~peN~~~p~~~e~  135 (139)
T d2a4da1          84 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG  135 (139)
T ss_dssp             TTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTT
T ss_pred             ccCcCCCCEEcceecCcccCCCccCcHHHHHHHHHHHHCCCCCCCCCCCCCc
Confidence            9999888998877663  68999999999999999999987 8888988873

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-37  Score=236.16  Aligned_cols=141  Identities=20%  Similarity=0.380  Sum_probs=121.4

Q ss_pred             chHHHHHHHHHHHHhcCC-CCC-eEEEecCCCceEEEEEEeC-CCCCCCCCCe-----------EEEEeeCCCCCCCCCC
Q 029412            2 IDFSRVQKELQECSKDIE-ASG-IKVTPVSDNLVHLTGIIPG-PVGTPYEGGT-----------FRLDITLPDGYPFEPP   67 (194)
Q Consensus         2 ~~~~RL~~E~~~l~~~~~-~~~-i~v~~~~~~~~~w~~~i~G-p~~tpy~gg~-----------f~~~i~fp~~YP~~pP   67 (194)
                      +|.+||++||++|+++.. ..| +.+.+.++|+++|++.|.| |++|||+||.           |+++|.||++||++||
T Consensus         4 ~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~PP   83 (162)
T d1zuoa1           4 QASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPP   83 (162)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhhcc
Confidence            578999999999998732 134 5677888999999999999 8999999986           9999999999999999


Q ss_pred             CcccccceecccccCCCccccccccc-CCCCcccCHHHHHHHHHHhhCCCCC--CCchhHHHHHHHHHCHHHHHHHHHH
Q 029412           68 KMHFVTKVWHPNISSQSGAICLDILK-DQWSPALTLKTALLSVQALLSAPAP--DDPQDAVVAQQYLKDHQTFLSTARY  143 (194)
Q Consensus        68 ~v~f~t~i~Hpnv~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~--~~p~n~~a~~~~~~~~~~f~~~a~~  143 (194)
                      +|+|.|++||||+...+|.||+++|. ++|+|++||++||.+|+++|.+|++  +.+.|.+++++ .++++.|++.||.
T Consensus        84 ~v~f~t~i~hpn~~~~~G~iCl~iL~~~~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y~~-~~~~~~y~~~~~~  161 (162)
T d1zuoa1          84 FVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNL-ARAQQSYNSIVQI  161 (162)
T ss_dssp             EEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCCCH-HHHHHHHHHHHHH
T ss_pred             eEEEEEEeeccccccCCceeecccccCCCCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHHHH-HHhHHHHHHHHhh
Confidence            99999999999965568999999995 6799999999999999999988765  45566666554 4567889999985

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-20  Score=139.93  Aligned_cols=111  Identities=17%  Similarity=0.253  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHhcCC--CCCeEEEecCCCceEEEEEEeCCCCCCCCCCeEEE--EeeCCCCCCCCCCCcccccc-----e
Q 029412            5 SRVQKELQECSKDIE--ASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGTFRL--DITLPDGYPFEPPKMHFVTK-----V   75 (194)
Q Consensus         5 ~RL~~E~~~l~~~~~--~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~-----i   75 (194)
                      .+..+|+.++.+.-+  .++..+...+++...|.+.|.|+.+++|+||.|.+  .|.||.+||++||.|.|.+.     +
T Consensus        17 ~~~~~d~~~~l~~~~~l~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~   96 (141)
T d1s1qa_          17 DLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIK   96 (141)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEEC
T ss_pred             hhHHHHHHHHHHhCCCCCCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCcccc
Confidence            466778888877632  13455566788899999999999999999999998  56689999999999988753     6


Q ss_pred             ecccccCCCcccccccccCCCCcccCHHHHHHHHHHhhCCC
Q 029412           76 WHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAP  116 (194)
Q Consensus        76 ~Hpnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p  116 (194)
                      +||||+. +|+||+++|.+.|.+..++.+++..|+.+|.+.
T Consensus        97 ~h~~V~~-~G~V~lp~L~~W~~~~s~L~~ll~~L~~~f~~e  136 (141)
T d1s1qa_          97 TGKHVDA-NGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDE  136 (141)
T ss_dssp             CSSSBCT-TCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHHS
T ss_pred             CCCeECC-CCCCcchhhcCCCcccccHHHHHHHHHHHhCCC
Confidence            8999994 999999999766667789999999999999864

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.6e-18  Score=129.74  Aligned_cols=115  Identities=23%  Similarity=0.266  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHhcCCC--CCeEEEecCCCceEEEEEEeCCCCCCCCCCe---EEEEeeCCCCCCCCCCCcccccc----
Q 029412            4 FSRVQKELQECSKDIEA--SGIKVTPVSDNLVHLTGIIPGPVGTPYEGGT---FRLDITLPDGYPFEPPKMHFVTK----   74 (194)
Q Consensus         4 ~~RL~~E~~~l~~~~~~--~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~----   74 (194)
                      -+|+.+|..++.++-+.  +...+...++....+.+.+.|.-..+|+|+.   |.+.|.||.+||+.||.++|.++    
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~  100 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM  100 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCS
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccc
Confidence            46888899888887321  1222334466677788888998889999996   78889999999999999999765    


Q ss_pred             -------eecccccCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCC
Q 029412           75 -------VWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPD  119 (194)
Q Consensus        75 -------i~Hpnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~  119 (194)
                             ++|||||. +|+||+++|.+.|.|+.++.++|..|+.+|.++..|
T Consensus       101 ~~~~~~i~~hp~Vd~-~G~V~lp~L~~W~~~~s~L~~ll~~l~~~f~~~P~d  151 (152)
T d1uzxa_         101 NTISSSLPIQEYIDS-NGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQD  151 (152)
T ss_dssp             CC----CGGGGGBCT-TSCBCCHHHHSCCTTTCCHHHHHHHHHTGGGSCCCC
T ss_pred             cCCCcccccCCCCCC-CCcEehHHhcCCCCccCcHHHHHHHHHHHhcCCCCC
Confidence                   57999994 899999999888889999999999999999987543

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3e-09  Score=61.06  Aligned_cols=38  Identities=24%  Similarity=0.393  Sum_probs=36.3

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      .++.|++|++|||++..|+.||+..+|+.+.|++.|+|
T Consensus         4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~N~e~A~~~LlS   41 (41)
T d1oqya1           4 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT   41 (41)
T ss_dssp             HHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            47899999999999999999999999999999999986

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=98.74  E-value=7.9e-09  Score=58.41  Aligned_cols=39  Identities=33%  Similarity=0.368  Sum_probs=36.2

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .+.-|++|+.|||++++|++||+..+|+++.|+-+|+.|
T Consensus         4 k~~ai~eL~~MGF~e~~A~~AL~k~~wnleaAtN~LLd~   42 (43)
T d2g3qa1           4 KSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS   42 (43)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            356799999999999999999999999999999999875

>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.3e-07  Score=49.93  Aligned_cols=36  Identities=31%  Similarity=0.359  Sum_probs=34.3

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412          157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLL  192 (194)
Q Consensus       157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~  192 (194)
                      ..++++|..|||++++++.||+-..||++-|+|+|+
T Consensus         7 t~kidklca~gf~knavi~alsskswdvetatelll   42 (42)
T d3e46a1           7 TKKIENLCAAGFDRNAVIVALSSKSWDVETATELLL   42 (42)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHccccccceeeeeccCccchhhHHHhhC
Confidence            578999999999999999999999999999999985

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.34  E-value=4e-07  Score=58.54  Aligned_cols=39  Identities=44%  Similarity=0.613  Sum_probs=37.0

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .++.+++|++|||++..|+.||+..+++.+.|++.|++.
T Consensus        29 ~ee~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~Ll~~   67 (73)
T d1vg5a_          29 SEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQ   67 (73)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            489999999999999999999999999999999999873

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.7e-07  Score=57.64  Aligned_cols=38  Identities=21%  Similarity=0.336  Sum_probs=36.2

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      +++.|++|++|||+++.|+.||...+++.+.|++.|++
T Consensus        19 de~~v~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~Lls   56 (63)
T d1wgna_          19 ERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA   56 (63)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            47899999999999999999999999999999999986

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.27  E-value=6.8e-07  Score=57.40  Aligned_cols=40  Identities=28%  Similarity=0.439  Sum_probs=37.4

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .+++.++.|++|||++..|++||...+++.+.|++.|++.
T Consensus        28 ~d~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~Av~~Lls~   67 (73)
T d1wiva_          28 IDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNN   67 (73)
T ss_dssp             SCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             CCHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            4588999999999999999999999999999999999874

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=7.3e-07  Score=55.63  Aligned_cols=41  Identities=32%  Similarity=0.392  Sum_probs=37.7

Q ss_pred             CchHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          154 LGVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       154 ~~~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      ..+++.+++|++|||++..|+.||...+.+.++|++.|+++
T Consensus         7 ~~d~~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~~wL~~~   47 (63)
T d1wjia_           7 GVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTS   47 (63)
T ss_dssp             SSCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            34589999999999999999999999999999999999863

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=6.6e-06  Score=48.85  Aligned_cols=39  Identities=28%  Similarity=0.480  Sum_probs=35.4

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHhCC-CHHHHHHHhhc
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIVGG-DENMALEKLLS  193 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~~~-~~~~~~e~l~~  193 (194)
                      ..++-++.|++|||++..|++||...+. +.+.|++-|++
T Consensus        11 ~~~~~l~~L~~MGF~~~~a~~AL~~t~n~~ve~A~~WLl~   50 (51)
T d2cpwa1          11 KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFS   50 (51)
T ss_dssp             SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence            3478899999999999999999999877 89999999985

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=1.5e-05  Score=49.64  Aligned_cols=40  Identities=25%  Similarity=0.476  Sum_probs=36.1

Q ss_pred             CchHHHHHHHHhcCCChhHHHHHHHHhCC-CHHHHHHHhhc
Q 029412          154 LGVEEKVQKLVEMGFPESQVRSTLEIVGG-DENMALEKLLS  193 (194)
Q Consensus       154 ~~~~~~~~~~~~~g~~~~~~~~al~~~~~-~~~~~~e~l~~  193 (194)
                      ..+++.+++|++|||++..|++||...+. +.++|++.|++
T Consensus         7 ~~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~   47 (64)
T d1whca_           7 GAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLME   47 (64)
T ss_dssp             CCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34578999999999999999999999976 89999999985

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.66  E-value=3.9e-05  Score=43.82  Aligned_cols=37  Identities=30%  Similarity=0.474  Sum_probs=33.0

Q ss_pred             HHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          158 EKVQKLVEMGF-PESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       158 ~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .-.++|.+||| ++...+.||.+.++|.+.|+|.|++|
T Consensus         7 ~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~g   44 (44)
T d2bwba1           7 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG   44 (44)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHhCc
Confidence            45678999999 67777899999999999999999987

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00011  Score=43.37  Aligned_cols=36  Identities=28%  Similarity=0.389  Sum_probs=31.9

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHhC-CCHHHHHHHhhc
Q 029412          158 EKVQKLVEMGFPESQVRSTLEIVG-GDENMALEKLLS  193 (194)
Q Consensus       158 ~~~~~~~~~g~~~~~~~~al~~~~-~~~~~~~e~l~~  193 (194)
                      +.+++|++|||++..|++||...+ -+.+.|++-|++
T Consensus         4 ~~v~~L~~MGF~~~~a~~Al~~t~n~~ve~A~~Wl~~   40 (51)
T d2crna1           4 SLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHD   40 (51)
T ss_dssp             SSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            458899999999999999999985 599999998874

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0012  Score=46.56  Aligned_cols=97  Identities=16%  Similarity=0.247  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhc------CCCCCeEEEecCCCceEEEEEEeCCCCCCCCCCe--EEEEeeCCCCCCCCCCCcccccce
Q 029412            4 FSRVQKELQECSKD------IEASGIKVTPVSDNLVHLTGIIPGPVGTPYEGGT--FRLDITLPDGYPFEPPKMHFVTKV   75 (194)
Q Consensus         4 ~~RL~~E~~~l~~~------~~~~~i~v~~~~~~~~~w~~~i~Gp~~tpy~gg~--f~~~i~fp~~YP~~pP~v~f~t~i   75 (194)
                      ..||..||..|-+.      .....+.+.. +.+=+.|.+.---    .+.--.  |.+++.+|..||..||.|..-.--
T Consensus        27 ~~RLKEEy~aLI~Yv~nNK~~dndWF~les-n~~GT~W~GkCWy----ihnl~kYeFd~eFdIP~tYP~t~pEi~lPeLd  101 (162)
T d2in1a1          27 VQRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGKCWY----IHDLLKYEFDIEFDIPITYPTTAPEIAVPELD  101 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-CTTSSEEEEEEEE----EETTEEEEEEEEEECCTTTTTSCCCCBCGGGS
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCeeeceeeE----EEeeeEEEEEEEeccCCCCCCCCcceeccccC
Confidence            47999999888652      2345677764 3344567654431    122233  555566799999999998763110


Q ss_pred             e-cccccCCCccccccccc-CCC---CcccCHHHHH
Q 029412           76 W-HPNISSQSGAICLDILK-DQW---SPALTLKTAL  106 (194)
Q Consensus        76 ~-Hpnv~~~~G~icl~~l~-~~W---~p~~~i~~il  106 (194)
                      - ..-.| .+|+||++.-. .-|   .|.++|...|
T Consensus       102 GKTaKMY-RGGkIClt~HFkPLWarN~PkfGIaHal  136 (162)
T d2in1a1         102 GKTAKMY-RGGKICLTDHFKPLWARNVPKFGLAHLM  136 (162)
T ss_dssp             SSCSSSC-GGGBCCCCTTSHHHHHTTTTSCCHHHHH
T ss_pred             Cchhhhh-cCceeeccccchhhhhhcCCchhHHHHH
Confidence            0 01122 47999998753 334   4667777665

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.19  E-value=0.00033  Score=45.63  Aligned_cols=39  Identities=31%  Similarity=0.353  Sum_probs=35.0

Q ss_pred             chHHHHHHHHhcCCChhHHHHHHHHh-CCCHHHHHHHhhc
Q 029412          155 GVEEKVQKLVEMGFPESQVRSTLEIV-GGDENMALEKLLS  193 (194)
Q Consensus       155 ~~~~~~~~~~~~g~~~~~~~~al~~~-~~~~~~~~e~l~~  193 (194)
                      .+++.+++|++|||++..|++||... |.+.+.|++.|++
T Consensus        28 ~d~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~   67 (84)
T d1veka_          28 ANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLS   67 (84)
T ss_dssp             CCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            35789999999999999999999996 5699999999875

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00048  Score=40.17  Aligned_cols=37  Identities=35%  Similarity=0.395  Sum_probs=32.5

Q ss_pred             HHHHHHHhcCC-ChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          158 EKVQKLVEMGF-PESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       158 ~~~~~~~~~g~-~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .-.+.|.+||| +++..+.||.+.+.|++.|+|.|+++
T Consensus        10 ~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~~   47 (50)
T d2dnaa1          10 KEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS   47 (50)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            46788999999 67777899999999999999999864

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.0012  Score=40.10  Aligned_cols=37  Identities=27%  Similarity=0.467  Sum_probs=32.3

Q ss_pred             HHHHHHHHhcCCC-hhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          157 EEKVQKLVEMGFP-ESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       157 ~~~~~~~~~~g~~-~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      ..-++.|.+|||. ++..+.||...+.|++.|+|.|+.
T Consensus        23 ~~QL~qL~eMGF~d~~~Nl~AL~~t~Gdv~~Aie~Ll~   60 (61)
T d1veja1          23 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLG   60 (61)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            4678899999995 555599999999999999999985

>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA-domain protein mud1
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.48  E-value=0.0035  Score=32.69  Aligned_cols=35  Identities=31%  Similarity=0.512  Sum_probs=31.3

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHh
Q 029412          157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKL  191 (194)
Q Consensus       157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l  191 (194)
                      ..++.+++.|||+.-.|-.||.+.|.|.+-|+.-|
T Consensus         3 nskiaqlvsmgfdpleaaqaldaangdldvaasfl   37 (38)
T d1z96a1           3 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL   37 (38)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             chHHHHHHHcCCCHHHHHHHHhhhcCcHHHHHHhh
Confidence            46789999999999999999999999999887655

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.018  Score=38.72  Aligned_cols=68  Identities=13%  Similarity=0.155  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhcCCCCCeEEEecCCCceE--EEEEEeCCC--CCCCCCCeEEEEeeCCCCCCCCCCCcccccce
Q 029412            7 VQKELQECSKDIEASGIKVTPVSDNLVH--LTGIIPGPV--GTPYEGGTFRLDITLPDGYPFEPPKMHFVTKV   75 (194)
Q Consensus         7 L~~E~~~l~~~~~~~~i~v~~~~~~~~~--w~~~i~Gp~--~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   75 (194)
                      +..|+..|+.--+ ..+.+....++...  ..+.+....  +..-......+.+.||++||..+|.+.+....
T Consensus         6 ~~~EleaL~SIY~-d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~~~   77 (115)
T d2daya1           6 LPSEVEVLESIYL-DELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPR   77 (115)
T ss_dssp             HHHHHHHHHHHST-TTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEE
T ss_pred             HHHHHHHHHhHCC-CceEEeccCCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeeccC
Confidence            5788888888532 45655444433333  344444211  11222346788899999999999999876543

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0098  Score=32.96  Aligned_cols=37  Identities=32%  Similarity=0.469  Sum_probs=31.0

Q ss_pred             HHHHHHHHhcCCChh-HHHHHHHHhCCCHHHHHHHhhc
Q 029412          157 EEKVQKLVEMGFPES-QVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       157 ~~~~~~~~~~g~~~~-~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      ....+.|.+|||..+ ..+.||...+.|.+.|+|.|+.
T Consensus         3 ~~QL~~L~~MGF~d~~~Ni~AL~~t~Gdv~~Aie~Ll~   40 (41)
T d2daha1           3 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ   40 (41)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            356788999999655 5568999999999999999874

>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-protein ligase ubc1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.64  E-value=0.033  Score=32.47  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=31.3

Q ss_pred             CchHHHHHHHHhcCCChhHHHHHHHHhCCC---------HHHHHHHhh
Q 029412          154 LGVEEKVQKLVEMGFPESQVRSTLEIVGGD---------ENMALEKLL  192 (194)
Q Consensus       154 ~~~~~~~~~~~~~g~~~~~~~~al~~~~~~---------~~~~~e~l~  192 (194)
                      .-+.+.++++++|||++..++.+|+..|..         ++..+|.|+
T Consensus         7 Gid~~~V~~f~~mGF~rdKvI~VLrrlgik~~~~~~~~~~n~ilEELL   54 (55)
T d1ttea1           7 GIDHDLIDEFESQGFEKDKIVEVLRRLGVKSLDPNDNNTANRIIEELL   54 (55)
T ss_dssp             CCSHHHHHHHHHHTCCHHHHHHHHHHSCCSSCCSSCCHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHcCCCchhHHHHHHHhCcCCCCcccchHHHHHHHHHh
Confidence            346789999999999999999999998664         355556654

>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.0077  Score=33.68  Aligned_cols=37  Identities=38%  Similarity=0.532  Sum_probs=34.3

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          157 EEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       157 ~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      .+-|+.|..+||+++.|+.|.-+++=+++.|+..|++
T Consensus         5 ~~aIeRL~~LGF~r~~viqay~ACdKNEelAaN~L~~   41 (44)
T d1oqya2           5 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS   41 (44)
T ss_dssp             HHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            4678999999999999999999999999999999886

>d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: NEDD8 ultimate buster-1 (Nub1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.35  E-value=0.052  Score=33.80  Aligned_cols=37  Identities=30%  Similarity=0.556  Sum_probs=33.6

Q ss_pred             hHHHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412          156 VEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLL  192 (194)
Q Consensus       156 ~~~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~  192 (194)
                      ..+.|++|+=|||++..|..||+-.+.++..|+.-|.
T Consensus        29 sQesidqLvYMGF~~~~Ae~ALRvfrGnVQlAaQtLa   65 (83)
T d1vega_          29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLA   65 (83)
T ss_dssp             CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHhcccHHHHHHHHHHhcccHHHHHHHHH
Confidence            3699999999999999999999999999999986653

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.09  E-value=0.049  Score=32.06  Aligned_cols=36  Identities=31%  Similarity=0.365  Sum_probs=31.2

Q ss_pred             HHHHHHHHh-cCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412          157 EEKVQKLVE-MGFPESQVRSTLEIVGGDENMALEKLL  192 (194)
Q Consensus       157 ~~~~~~~~~-~g~~~~~~~~al~~~~~~~~~~~e~l~  192 (194)
                      -+.|.+|.+ -|..--+|.+||++.|||.+.|.|.|.
T Consensus         5 ~~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~Lr   41 (56)
T d1xb2b1           5 KELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLH   41 (56)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            356677766 499999999999999999999999886

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.79  E-value=0.057  Score=34.78  Aligned_cols=38  Identities=34%  Similarity=0.507  Sum_probs=34.6

Q ss_pred             HHHHHHHHhc-CCChhHHHHHHHHhCCCHHHHHHHhhcC
Q 029412          157 EEKVQKLVEM-GFPESQVRSTLEIVGGDENMALEKLLSS  194 (194)
Q Consensus       157 ~~~~~~~~~~-g~~~~~~~~al~~~~~~~~~~~e~l~~~  194 (194)
                      .++|.+++++ |-....|+.||-+++.|.+.|+..|+.|
T Consensus        33 ~~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~lLEg   71 (91)
T d1wj7a1          33 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG   71 (91)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHhcCCccHHHHHHHHHhc
Confidence            5778888886 9999999999999999999999999876

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.71  E-value=0.066  Score=31.00  Aligned_cols=35  Identities=37%  Similarity=0.391  Sum_probs=30.7

Q ss_pred             HHHHHHHh-cCCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412          158 EKVQKLVE-MGFPESQVRSTLEIVGGDENMALEKLL  192 (194)
Q Consensus       158 ~~~~~~~~-~g~~~~~~~~al~~~~~~~~~~~e~l~  192 (194)
                      +.|.+|.+ -|.+--+|.+||.+.++|.+.|.|.|.
T Consensus         4 elvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~Lr   39 (52)
T d1aipc1           4 ELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLR   39 (52)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            56677765 499999999999999999999999885

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.27  E-value=0.084  Score=30.76  Aligned_cols=36  Identities=25%  Similarity=0.334  Sum_probs=31.3

Q ss_pred             HHHHHHHHhc-CCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412          157 EEKVQKLVEM-GFPESQVRSTLEIVGGDENMALEKLL  192 (194)
Q Consensus       157 ~~~~~~~~~~-g~~~~~~~~al~~~~~~~~~~~e~l~  192 (194)
                      -+.|.+|.+. |..--+|.+||.+.+||.+.|.|.|.
T Consensus         5 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~Lr   41 (54)
T d1efub3           5 ASLVKELRERTGAGMMDCKKALTEANGDIELAIENMR   41 (54)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3567777664 99999999999999999999999885

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.14  Score=35.17  Aligned_cols=68  Identities=10%  Similarity=0.138  Sum_probs=43.8

Q ss_pred             CeEEEEeeCCCCCCCCCCCcccccceecccccCCCcccccccccCCCCcccCHHHHHHHHHHhhCCCCCCCchhHHHHHH
Q 029412           50 GTFRLDITLPDGYPFEPPKMHFVTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQ  129 (194)
Q Consensus        50 g~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~  129 (194)
                      -.+.+.+.+|++||..+|.|...+                     .|-+......+...+...+.+-....+.--++...
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~~---------------------~~l~~~~~~~l~~~l~~~~~e~~~Ge~mif~lv~~  126 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGRS---------------------SELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQW  126 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEEC---------------------SSSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHH
T ss_pred             ceEEEEEEeCCCCCCCCCCceeec---------------------cccCHHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            357788999999999999876432                     13334456667777777776543455655566665


Q ss_pred             HHHCHHHHH
Q 029412          130 YLKDHQTFL  138 (194)
Q Consensus       130 ~~~~~~~f~  138 (194)
                      .+++-..|.
T Consensus       127 lqe~~~~~l  135 (141)
T d2dawa1         127 LQDNSASYF  135 (141)
T ss_dssp             HHHTTHHHH
T ss_pred             HHHHHHHHH
Confidence            555555443

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.1  Score=35.71  Aligned_cols=24  Identities=29%  Similarity=0.407  Sum_probs=20.1

Q ss_pred             CCeEEEEeeCCCCCCCCCCCcccc
Q 029412           49 GGTFRLDITLPDGYPFEPPKMHFV   72 (194)
Q Consensus        49 gg~f~~~i~fp~~YP~~pP~v~f~   72 (194)
                      .....+.+.+|.+||..+|.|...
T Consensus        65 ~~~l~L~~~lP~~YP~~~P~i~l~   88 (140)
T d2daxa1          65 MAMFSLACILPFKYPAVLPEITVR   88 (140)
T ss_dssp             EEEEEEEEEECSSTTSSCCCCEEE
T ss_pred             CceEEEEEEecCcCCCcCCceecc
Confidence            446889999999999999998653

>d2dkla1 a.5.2.1 (A:8-79) Trinucleotide repeat containing 6c protein, TNRC6C {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Trinucleotide repeat containing 6c protein, TNRC6C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.14  E-value=0.19  Score=30.55  Aligned_cols=36  Identities=25%  Similarity=0.466  Sum_probs=31.8

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          158 EKVQKLVEMGFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       158 ~~~~~~~~~g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      -.+.++.+|||.++++..+|..++-+.+.|...|+.
T Consensus        16 p~~KQfsnMGf~re~~e~~l~sN~m~L~~a~~~l~d   51 (72)
T d2dkla1          16 RLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLE   51 (72)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHhhcCCcCCChHHhhhccCcchhhcccchhh
Confidence            346889999999999999999999999999877753

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.83  E-value=0.22  Score=27.86  Aligned_cols=36  Identities=28%  Similarity=0.434  Sum_probs=31.2

Q ss_pred             HHHHHHHHhc-CCChhHHHHHHHHhCCCHHHHHHHhh
Q 029412          157 EEKVQKLVEM-GFPESQVRSTLEIVGGDENMALEKLL  192 (194)
Q Consensus       157 ~~~~~~~~~~-g~~~~~~~~al~~~~~~~~~~~e~l~  192 (194)
                      ++.|+++++. |-++..|+.-|+..+|+.+.|+..-+
T Consensus         6 ~~lI~qF~~iTg~~~~~A~~~Le~~~w~Le~Ai~~yf   42 (46)
T d1v92a_           6 QDALREFVAVTGAEEDRARFFLESAGWDLQIALASFY   42 (46)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHH
Confidence            6788888874 99999999999999999999995543

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.80  E-value=0.27  Score=33.52  Aligned_cols=69  Identities=14%  Similarity=0.114  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEecCC-----CceEEEEEEeCC-CCCCCCCCeEEEEeeCCCCCCCCCCCcccccc
Q 029412            5 SRVQKELQECSKDIEASGIKVTPVSD-----NLVHLTGIIPGP-VGTPYEGGTFRLDITLPDGYPFEPPKMHFVTK   74 (194)
Q Consensus         5 ~RL~~E~~~l~~~~~~~~i~v~~~~~-----~~~~w~~~i~Gp-~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   74 (194)
                      .+-..|+..|..--+ ..+.+.....     ......+.|... .+.......+.+.+.||.+||..+|.+.+...
T Consensus        13 E~Q~~EleaL~SIY~-dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~~~   87 (137)
T d1ukxa_          13 QRQDHELQALEAIYG-SDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNA   87 (137)
T ss_dssp             HHHHHHHHHHHHHTS-SSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEE
T ss_pred             HHHHHHHHHHHHHcC-CceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEecC
Confidence            455678888876422 3343322111     112344455432 23334446799999999999999999887653

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.15  E-value=0.88  Score=26.67  Aligned_cols=38  Identities=29%  Similarity=0.525  Sum_probs=34.3

Q ss_pred             hHHHHHHHHhc--CCChhHHHHHHHHhCCCHHHHHHHhhc
Q 029412          156 VEEKVQKLVEM--GFPESQVRSTLEIVGGDENMALEKLLS  193 (194)
Q Consensus       156 ~~~~~~~~~~~--g~~~~~~~~al~~~~~~~~~~~e~l~~  193 (194)
                      .++.++.|.+|  .+++.-..-.|++++++.+.|+++|+.
T Consensus         9 ~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~   48 (59)
T d1wgla_           9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ   48 (59)
T ss_dssp             CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            47889999997  899999999999999999999999974