Citrus Sinensis ID: 029414

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MLILRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHccccccEEEEEcccccccEEcccccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccHccccHHHHHHHHHHHHHHccHHHEEEcHccHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHcccccccEEEEEEEcccHcHHHHHHHHHHHHccccEEEEEcccccccEcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHcc
Coil and Loop (DISEMBL)
MLILRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTaltipedgqitaidvnretyeiGLPIIKKAGVDHKINFIESEALSVLDQLLKYsenegsfdyafvdadkdnyCNYHERLMKLLKVGGiavydntlwggtvavpeeqvpdhfrgsSRQAILDLNrsladdprvqlSHVALGDGITICRRIF
Flexible Loop (DISEMBL)
MLILRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSladdprvqlshvalgdgiticrrif
Low Complexity Region (SEG)
MLILRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered region (IsUnstruct)
************DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQV**********AILDLNRSLADDPRVQLSHVALGDGITICRR**
Disordered Region (DISOPRED)
**ILRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered Region (DISEMBL)
MLILRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered Region (DISPRO)
****RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLILRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q9C5D7	232	Probable caffeoyl-CoA O-m	yes	no	0.974	0.814	0.689	4e-74
Q43161	241	Caffeoyl-CoA O-methyltran	N/A	no	0.969	0.780	0.587	9e-64
Q40313	247	Caffeoyl-CoA O-methyltran	N/A	no	0.963	0.757	0.588	6e-63
Q43095	247	Caffeoyl-CoA O-methyltran	N/A	no	0.963	0.757	0.582	3e-61
O65162	254	Caffeoyl-CoA O-methyltran	N/A	no	0.963	0.736	0.566	4e-61
O65862	247	Caffeoyl-CoA O-methyltran	yes	no	0.963	0.757	0.582	4e-61
Q9C9W3	232	Putative caffeoyl-CoA O-m	no	no	0.938	0.784	0.586	6e-61
O04899	240	Caffeoyl-CoA O-methyltran	N/A	no	0.963	0.779	0.577	7e-61
O65922	247	Caffeoyl-CoA O-methyltran	no	no	0.963	0.757	0.566	1e-60
O49499	259	Caffeoyl-CoA O-methyltran	no	no	0.963	0.722	0.572	2e-60

>sp|Q9C5D7|CAMT3_ARATH Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1

 Score =  276 bits (707), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 131/190 (68%), Positives = 160/190 (84%), Gaps = 1/190 (0%)

Query: 5   RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
           +A M TAPDAGQLM MLL LVNA+KTIE+GVFTGYSLLLTALT+PEDG++ AID+NR++Y
Sbjct: 44  QAGMATAPDAGQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSY 103

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
           EIGLP+IKKAGV+HKI+F ESEAL  LD+LL    NEG FD+AFVDADK NY NYHERL+
Sbjct: 104 EIGLPVIKKAGVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLI 163

Query: 125 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184
           +L+KVGGI VYDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALG
Sbjct: 164 RLIKVGGIIVYDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALG 222

Query: 185 DGITICRRIF 194
           DGITICRR++
Sbjct: 223 DGITICRRLY 232

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0EC: 4

>sp|Q43161|CAMT_STELP Caffeoyl-CoA O-methyltransferase OS=Stellaria longipes PE=2 SV=1

 Score =  242 bits (618), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 111/189 (58%), Positives = 150/189 (79%), Gaps = 1/189 (0%)

Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
           + MGT+P AGQL++ +L+ V  KKTIE+GVFTGYSLL TAL+IP+DG+ITA+D++RE Y 
Sbjct: 54  SFMGTSPLAGQLLSFMLKTVKPKKTIEVGVFTGYSLLATALSIPDDGKITAVDIDREAYN 113

Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
           +GL +IKKAGV+ KI+FI S+A+++LD LL     +GS+D+AFVDADK NY NYHERL++
Sbjct: 114 VGLALIKKAGVESKISFIVSDAMTLLDDLLADGRYQGSYDFAFVDADKTNYVNYHERLIE 173

Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 185
           L+KVGGI  YDNTLWGGTVA+PE +VPD F  ++   +  LN  L  D R+ ++H+ +GD
Sbjct: 174 LVKVGGIIAYDNTLWGGTVALPESEVPD-FMKNNWVCVTKLNEILGSDARIDIAHLPVGD 232

Query: 186 GITICRRIF 194
           GIT CRR++
Sbjct: 233 GITFCRRVY 241

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Stellaria longipes (taxid: 19744)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q40313|CAMT_MEDSA Caffeoyl-CoA O-methyltransferase OS=Medicago sativa GN=CCOMT PE=1 SV=1

 Score =  239 bits (611), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 110/187 (58%), Positives = 147/187 (78%)

Query: 7   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 66
           +M T+ D GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+
Sbjct: 60  IMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL 119

Query: 67  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 126
           GLP+IKKAGVDHKI+F E  AL VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+ L
Sbjct: 120 GLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDL 179

Query: 127 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 186
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 180 VKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDG 239

Query: 187 ITICRRI 193
           ITICRRI
Sbjct: 240 ITICRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43095|CAMT_POPTM Caffeoyl-CoA O-methyltransferase OS=Populus tremuloides PE=2 SV=1

 Score =  234 bits (596), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 109/187 (58%), Positives = 145/187 (77%)

Query: 7   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 66
           +M T+ D GQ + MLL+LVNAK T+EIGV+TGYSLL TAL IPEDG+I A+D+NRE YE+
Sbjct: 60  IMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYEL 119

Query: 67  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 126
           GLP+I+KAGV HKI+F E  AL VLDQ+++  +  GSFD+ FVDADKDNY NYH+RL++L
Sbjct: 120 GLPVIQKAGVAHKIDFKEGPALPVLDQMIEDGKYHGSFDFIFVDADKDNYINYHKRLIEL 179

Query: 127 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 186
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 180 VKVGGLIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG 239

Query: 187 ITICRRI 193
           IT+CRRI
Sbjct: 240 ITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65162|CAMT_MESCR Caffeoyl-CoA O-methyltransferase OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  234 bits (596), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 106/187 (56%), Positives = 146/187 (78%)

Query: 7   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 66
           +M T+ D GQ + MLL+L+NAK TIEIGV+TGYSLL +AL +P+DG+I A+D+NRE YE+
Sbjct: 67  LMTTSADEGQFLNMLLKLINAKNTIEIGVYTGYSLLASALALPDDGKILAMDINRENYEL 126

Query: 67  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 126
           GLP+I+KAGV HKI+F E  AL VLD L++ ++N GSFD+AFVDADKDNY NYH+RL+ L
Sbjct: 127 GLPVIQKAGVAHKIDFREGPALPVLDLLIEDAKNHGSFDFAFVDADKDNYGNYHKRLIDL 186

Query: 127 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 186
           +K+GG+  YDNTLW G+VA P +     +    R  +++ N+++A DPRV++  + +GDG
Sbjct: 187 VKIGGVIGYDNTLWNGSVAAPADAPMRKYVRYYRDFVMEFNKAIAADPRVEICQLPVGDG 246

Query: 187 ITICRRI 193
           IT+CRRI
Sbjct: 247 ITLCRRI 253

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65862|CAMT1_POPTR Caffeoyl-CoA O-methyltransferase 1 OS=Populus trichocarpa GN=CCOAOMT1 PE=2 SV=1

 Score =  233 bits (595), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 109/187 (58%), Positives = 145/187 (77%)

Query: 7   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 66
           +M T+ D GQ + MLL+LVNAK T+EIGV+TGYSLL TAL IPEDG+I A+D+NRE YE+
Sbjct: 60  IMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYEL 119

Query: 67  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 126
           GLP+I+KAGV HKI+F E  AL VLDQ+++  +  GSFD+ FVDADKDNY NYH+RL++L
Sbjct: 120 GLPVIQKAGVAHKIDFKEGPALPVLDQMIEDGKCHGSFDFIFVDADKDNYINYHKRLIEL 179

Query: 127 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 186
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 180 VKVGGLIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG 239

Query: 187 ITICRRI 193
           IT+CRRI
Sbjct: 240 ITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9C9W3|CAMT1_ARATH Putative caffeoyl-CoA O-methyltransferase At1g67980 OS=Arabidopsis thaliana GN=At1g67980 PE=2 SV=1

 Score =  233 bits (594), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 109/186 (58%), Positives = 144/186 (77%), Gaps = 4/186 (2%)

Query: 8   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 67
           M    D G  ++ML++++NAK TIEIGVFTGYSLL TAL +PEDG+ITAID+++E YE+G
Sbjct: 50  MEVPVDEGHFLSMLVKIMNAKNTIEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVG 109

Query: 68  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 127
           L  IKKAGVDHKINFI S+ L  LDQL+    ++  FD+AF DADK +Y N+HERL+KL+
Sbjct: 110 LEFIKKAGVDHKINFIHSDGLKALDQLVN---DKCEFDFAFADADKSSYVNFHERLLKLV 166

Query: 128 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 187
           KVGGI  +DNTLW G VA  E+ VP+H R   R A+++ N+ LA DPRV++S +++GDGI
Sbjct: 167 KVGGIIAFDNTLWFGFVAEDEDGVPEHMR-EYRAALIEFNKKLALDPRVEVSQISIGDGI 225

Query: 188 TICRRI 193
           T+CRR+
Sbjct: 226 TLCRRL 231

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O04899|CAMT5_TOBAC Caffeoyl-CoA O-methyltransferase 5 OS=Nicotiana tabacum GN=CCOAOMT5 PE=2 SV=1

 Score =  233 bits (593), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 108/187 (57%), Positives = 144/187 (77%)

Query: 7   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 66
           +M T+ D GQ + MLL+L+NAK T+EIGV+TGYSLL TAL IP+DG+I A+D+NRE YEI
Sbjct: 53  LMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAIPDDGKILAMDINRENYEI 112

Query: 67  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 126
           GLPII+KAGV HKI F E  AL VLDQL++  +N G++D+ FVDADKDNY NYH+R++ L
Sbjct: 113 GLPIIEKAGVAHKIEFREGPALPVLDQLVEDKKNHGTYDFIFVDADKDNYINYHKRIIDL 172

Query: 127 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 186
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 173 VKVGGLIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG 232

Query: 187 ITICRRI 193
           IT+CRRI
Sbjct: 233 ITLCRRI 239

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. Methylates 5-hydroxyferulolyl-CoA more efficiently than caffeoyl-CoA.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65922|CAMT2_POPTR Caffeoyl-CoA O-methyltransferase 2 OS=Populus trichocarpa GN=CCOAOMT2 PE=2 SV=1

 Score =  232 bits (591), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 106/187 (56%), Positives = 145/187 (77%)

Query: 7   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 66
           +M T+ D GQ + MLL+L+NAK T+EIGVFTGYSLL TAL IPEDG+I A+D+NRE YE+
Sbjct: 60  IMTTSADEGQFLNMLLKLINAKNTMEIGVFTGYSLLATALAIPEDGKILAMDINRENYEL 119

Query: 67  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 126
           GLP+I+KAG++HKI F E  AL VLDQ+++  +  G++D+ FVDADKDNY NYH+RL++L
Sbjct: 120 GLPVIQKAGLEHKIEFKEGPALPVLDQMIEDGKYHGTYDFIFVDADKDNYINYHKRLIEL 179

Query: 127 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 186
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 180 VKVGGLIGYDNTLWNGSVVAPADAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG 239

Query: 187 ITICRRI 193
           IT+CRRI
Sbjct: 240 ITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O49499|CAMT4_ARATH Caffeoyl-CoA O-methyltransferase 1 OS=Arabidopsis thaliana GN=CCOAOMT1 PE=1 SV=1

 Score =  231 bits (589), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/187 (57%), Positives = 144/187 (77%)

Query: 7   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 66
           +M T+ D GQ + ML++LVNAK T+EIGV+TGYSLL TAL +PEDG+I A+DVNRE YE+
Sbjct: 72  IMTTSADEGQFLNMLIKLVNAKNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENYEL 131

Query: 67  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 126
           GLPII+KAGV HKI+F E  AL VLD+++   +N G++D+ FVDADKDNY NYH+RL+ L
Sbjct: 132 GLPIIEKAGVAHKIDFREGPALPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDL 191

Query: 127 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 186
           +K+GG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 192 VKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG 251

Query: 187 ITICRRI 193
           ITICRRI
Sbjct: 252 ITICRRI 258

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
255546215	228	o-methyltransferase, putative [Ricinus c	0.974	0.828	0.752	2e-79
224122628	236	predicted protein [Populus trichocarpa]	0.974	0.800	0.747	2e-78
255546213	228	o-methyltransferase, putative [Ricinus c	0.963	0.820	0.734	3e-76
297738705	236	unnamed protein product [Vitis vinifera]	0.969	0.796	0.735	1e-74
147799759	1625	hypothetical protein VITISV_020117 [Viti	0.969	0.115	0.735	2e-74
225444995	282	PREDICTED: probable caffeoyl-CoA O-methy	0.969	0.666	0.735	2e-74
297803474	238	hypothetical protein ARALYDRAFT_913940 [	0.974	0.794	0.689	9e-73
225444997	242	PREDICTED: probable caffeoyl-CoA O-methy	0.979	0.785	0.695	2e-72
171849075	237	Chain A, Crystal Structure Of Pfomt, Phe	0.969	0.793	0.677	2e-72
18416703	232	putative caffeoyl-CoA O-methyltransferas	0.974	0.814	0.689	2e-72

>gi|255546215|ref|XP_002514167.1| o-methyltransferase, putative [Ricinus communis] gi|223546623|gb|EEF48121.1| o-methyltransferase, putative [Ricinus communis]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 143/190 (75%), Positives = 169/190 (88%), Gaps = 1/190 (0%)

Query: 5   RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
           RA M T+PDAGQL+A+LL+LVNAKKTIE+GVFTGYSLLLTAL+IPEDG+ITAIDVNRETY
Sbjct: 40  RAGMATSPDAGQLIALLLQLVNAKKTIEVGVFTGYSLLLTALSIPEDGKITAIDVNRETY 99

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
           +IGLPII+KAGV+HKI+F+ESEAL VLD+LLK   NEGSFD+AFVDADK NY NYHERL+
Sbjct: 100 DIGLPIIRKAGVEHKIDFMESEALPVLDKLLKDHGNEGSFDFAFVDADKINYWNYHERLL 159

Query: 125 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184
           KLLKVGGI VYDNTLWGGTVA+PEE+ P+  R   RQ  ++LN+ LA D R+Q+SH +LG
Sbjct: 160 KLLKVGGIVVYDNTLWGGTVAIPEEEAPEAMR-MGRQLTIELNKLLAADSRIQISHASLG 218

Query: 185 DGITICRRIF 194
           DGITICRR++
Sbjct: 219 DGITICRRLY 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122628|ref|XP_002330529.1| predicted protein [Populus trichocarpa] gi|222872463|gb|EEF09594.1| predicted protein [Populus trichocarpa]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/190 (74%), Positives = 164/190 (86%), Gaps = 1/190 (0%)

Query: 5   RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
           RAMM TAPDAGQLMAMLL+LVNA+KTIE+GVFTGYSLLLTAL+IP+DG+ITAIDVNRE Y
Sbjct: 48  RAMMATAPDAGQLMAMLLKLVNAQKTIEVGVFTGYSLLLTALSIPKDGKITAIDVNREAY 107

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
           EIGLPII+ AGV+HKINFIESEA  +LD+LL+   NEGSFD+AFVDADK NY NYHERLM
Sbjct: 108 EIGLPIIRNAGVEHKINFIESEAQPILDKLLEDHGNEGSFDFAFVDADKVNYWNYHERLM 167

Query: 125 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184
           KLLKVGGI VYDNTLWGGTVA+ EE  P++ + + RQ  ++ N+ LA D RVQ+SH   G
Sbjct: 168 KLLKVGGIVVYDNTLWGGTVALSEESTPENMK-AGRQLTIEFNKLLAADSRVQISHAPSG 226

Query: 185 DGITICRRIF 194
           DGITICRRI+
Sbjct: 227 DGITICRRIY 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546213|ref|XP_002514166.1| o-methyltransferase, putative [Ricinus communis] gi|223546622|gb|EEF48120.1| o-methyltransferase, putative [Ricinus communis]

 Score =  289 bits (740), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 138/188 (73%), Positives = 162/188 (86%), Gaps = 1/188 (0%)

Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
           A M T+PDAGQ MAMLL+LVNAKKTIE+GVFTGYSLLLTAL+IPEDG+I AIDV+RE YE
Sbjct: 41  AKMATSPDAGQFMAMLLQLVNAKKTIEVGVFTGYSLLLTALSIPEDGKIVAIDVDREAYE 100

Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
           IGLPII+KAGV+HKI+F+ESEAL VLD+LLK   NE SFD+AFVDADK NY NYHERL+K
Sbjct: 101 IGLPIIRKAGVEHKIDFMESEALPVLDKLLKEHGNESSFDFAFVDADKINYWNYHERLLK 160

Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 185
           L+KVGGI +YDN+LW G+VAVPEE+ P+H R   RQ  ++ N+ LA D RVQ+SH +LGD
Sbjct: 161 LVKVGGIVIYDNSLWRGSVAVPEEEAPEHLR-FCRQLTIEHNKFLAADSRVQISHASLGD 219

Query: 186 GITICRRI 193
           GITICRRI
Sbjct: 220 GITICRRI 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738705|emb|CBI27950.3| unnamed protein product [Vitis vinifera]

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/189 (73%), Positives = 164/189 (86%), Gaps = 1/189 (0%)

Query: 5   RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
           +A+M TAPDAGQLM MLLRLVNAKKTIEIGVFTGYSLLLTAL+IP+DG+ITAIDV+R+ Y
Sbjct: 48  KAVMATAPDAGQLMDMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAY 107

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
           E+GLP+I+KAGV+HKINFIES+AL VLD+LL+  ENEG FD+AFVDADK NY NYHERLM
Sbjct: 108 EMGLPVIRKAGVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDADKVNYKNYHERLM 167

Query: 125 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184
           KLLK+GGI VYDNTL GGTVA+PEE V ++ R  +R+  ++LN  LA DPRVQ+    LG
Sbjct: 168 KLLKMGGIVVYDNTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAADPRVQICLAPLG 226

Query: 185 DGITICRRI 193
           DGITICRR+
Sbjct: 227 DGITICRRV 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799759|emb|CAN75051.1| hypothetical protein VITISV_020117 [Vitis vinifera]

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 139/189 (73%), Positives = 164/189 (86%), Gaps = 1/189 (0%)

Query: 5    RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
            +A+M TAPDAGQLM MLLRLVNAKKTIEIGVFTGYSLLLTAL+IP+DG+ITAIDV+R+ Y
Sbjct: 1437 KAVMATAPDAGQLMDMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAY 1496

Query: 65   EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
            E+GLP+I+KAGV+HKINFIES+AL VLD+LL+  ENEG FD+AFVDADK NY NYHERLM
Sbjct: 1497 EMGLPVIRKAGVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDADKXNYKNYHERLM 1556

Query: 125  KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184
            KLLK+GGI VYDNTL GGTVA+PEE V ++ R  +R+  ++LN  LA DPRVQ+    LG
Sbjct: 1557 KLLKMGGIVVYDNTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAADPRVQICLAPLG 1615

Query: 185  DGITICRRI 193
            DGITICRR+
Sbjct: 1616 DGITICRRV 1624

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444995|ref|XP_002279921.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220-like [Vitis vinifera]

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 139/189 (73%), Positives = 164/189 (86%), Gaps = 1/189 (0%)

Query: 5   RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
           +A+M TAPDAGQLM MLLRLVNAKKTIEIGVFTGYSLLLTAL+IP+DG+ITAIDV+R+ Y
Sbjct: 94  KAVMATAPDAGQLMDMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAY 153

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
           E+GLP+I+KAGV+HKINFIES+AL VLD+LL+  ENEG FD+AFVDADK NY NYHERLM
Sbjct: 154 EMGLPVIRKAGVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDADKVNYKNYHERLM 213

Query: 125 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184
           KLLK+GGI VYDNTL GGTVA+PEE V ++ R  +R+  ++LN  LA DPRVQ+    LG
Sbjct: 214 KLLKMGGIVVYDNTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAADPRVQICLAPLG 272

Query: 185 DGITICRRI 193
           DGITICRR+
Sbjct: 273 DGITICRRV 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803474|ref|XP_002869621.1| hypothetical protein ARALYDRAFT_913940 [Arabidopsis lyrata subsp. lyrata] gi|297315457|gb|EFH45880.1| hypothetical protein ARALYDRAFT_913940 [Arabidopsis lyrata subsp. lyrata]

 Score =  278 bits (711), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 131/190 (68%), Positives = 160/190 (84%), Gaps = 1/190 (0%)

Query: 5   RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
           +A M TAPDAGQLM MLL+LVNA+KTIE+GVFTGYSLLLTALT+PEDG++ AIDVNR++Y
Sbjct: 50  QAGMATAPDAGQLMGMLLKLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDVNRDSY 109

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
           EIGLP+IKK GV+HKI+F ESEAL  LD+LL    NEG FD+AFVDADK NY NYHERL+
Sbjct: 110 EIGLPVIKKVGVEHKIDFRESEALPALDELLNDKANEGGFDFAFVDADKVNYWNYHERLI 169

Query: 125 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184
           +L+KVGGI VYDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALG
Sbjct: 170 RLIKVGGIIVYDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALG 228

Query: 185 DGITICRRIF 194
           DGITICRR++
Sbjct: 229 DGITICRRLY 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444997|ref|XP_002279936.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Vitis vinifera]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/194 (69%), Positives = 163/194 (84%), Gaps = 4/194 (2%)

Query: 5   RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
           RA++ TAPDAGQ + MLL+LVNAKKTIEIGVFTGYSLLLTAL+IP+DG+I AIDV+R+ Y
Sbjct: 49  RAIIATAPDAGQSIDMLLKLVNAKKTIEIGVFTGYSLLLTALSIPDDGKIIAIDVDRKNY 108

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
           EIGLPII++AGV+HKINFIES+AL VLD+LL+  ENEGS D+AFVDADK NY NYHERLM
Sbjct: 109 EIGLPIIRRAGVEHKINFIESQALPVLDKLLEDHENEGSLDFAFVDADKGNYKNYHERLM 168

Query: 125 KLLKVGGIAVYDNTLWGGTVAVPEEQVPD----HFRGSSRQAILDLNRSLADDPRVQLSH 180
           KLLKVGG+ VYDNTLW GTVA+PE+ V +     ++   R+ I++LN+ LA D RVQ+  
Sbjct: 169 KLLKVGGVVVYDNTLWHGTVALPEDLVEELVDGEYKKEMRKHIMELNKYLATDSRVQICV 228

Query: 181 VALGDGITICRRIF 194
             LGDGITICRRI+
Sbjct: 229 APLGDGITICRRIY 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171849075|pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum gi|171849076|pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum gi|37720881|gb|AAN61072.1| O-methyltransferase [Mesembryanthemum crystallinum]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 128/189 (67%), Positives = 160/189 (84%), Gaps = 1/189 (0%)

Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
           + M T+P AGQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+ITAID +RE YE
Sbjct: 50  SYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYE 109

Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
           IGLP I+KAGV+HKINFIES+A+  LD LL+  E+EGS+D+ FVDADK NY  YHERLMK
Sbjct: 110 IGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMK 169

Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 185
           L+KVGGI  YDNTLWGGTVA PE +VPD F   +R+A+++LN+ LA DPR+++ H+ LGD
Sbjct: 170 LVKVGGIVAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGD 228

Query: 186 GITICRRIF 194
           GIT CRR++
Sbjct: 229 GITFCRRLY 237

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416703|ref|NP_567739.1| putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] gi|30580368|sp|Q9C5D7.1|CAMT3_ARATH RecName: Full=Probable caffeoyl-CoA O-methyltransferase At4g26220; AltName: Full=Trans-caffeoyl-CoA 3-O-methyltransferase; Short=CCoAMT; Short=CCoAOMT gi|13430810|gb|AAK26027.1|AF360317_1 putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] gi|15810549|gb|AAL07162.1| putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] gi|332659772|gb|AEE85172.1| putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana]

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/190 (68%), Positives = 160/190 (84%), Gaps = 1/190 (0%)

Query: 5   RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
           +A M TAPDAGQLM MLL LVNA+KTIE+GVFTGYSLLLTALT+PEDG++ AID+NR++Y
Sbjct: 44  QAGMATAPDAGQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSY 103

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
           EIGLP+IKKAGV+HKI+F ESEAL  LD+LL    NEG FD+AFVDADK NY NYHERL+
Sbjct: 104 EIGLPVIKKAGVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLI 163

Query: 125 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184
           +L+KVGGI VYDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALG
Sbjct: 164 RLIKVGGIIVYDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALG 222

Query: 185 DGITICRRIF 194
           DGITICRR++
Sbjct: 223 DGITICRRLY 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.974	0.814	0.689	1.5e-67
TAIR|locus:2200271	232	CCOAMT "caffeoyl-CoA 3-O-methy	0.912	0.762	0.596	2.5e-56
TAIR|locus:2124286	259	CCoAOMT1 "caffeoyl coenzyme A	0.963	0.722	0.572	5.3e-56
UNIPROTKB|Q7F8T6	292	ROMT-17 "Tricin synthase 2" [O	0.958	0.636	0.543	2.6e-54
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.943	0.785	0.548	1e-52
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.953	0.734	0.552	2.2e-50
ZFIN|ZDB-GENE-030131-1072	286	comtd1 "catechol-O-methyltrans	0.917	0.622	0.437	7.2e-36
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.876	0.636	0.446	1.1e-34
TAIR|locus:2079557	290	OMTF3 "O-MTase family 3 protei	0.902	0.603	0.428	1.2e-33
DICTYBASE|DDB_G0271590	251	omt1 "O-methyltransferase fami	0.917	0.709	0.414	1e-29

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 131/190 (68%), Positives = 160/190 (84%)

Query:     5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
             +A M TAPDAGQLM MLL LVNA+KTIE+GVFTGYSLLLTALT+PEDG++ AID+NR++Y
Sbjct:    44 QAGMATAPDAGQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSY 103

Query:    65 EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
             EIGLP+IKKAGV+HKI+F ESEAL  LD+LL    NEG FD+AFVDADK NY NYHERL+
Sbjct:   104 EIGLPVIKKAGVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLI 163

Query:   125 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184
             +L+KVGGI VYDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALG
Sbjct:   164 RLIKVGGIIVYDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALG 222

Query:   185 DGITICRRIF 194
             DGITICRR++
Sbjct:   223 DGITICRRLY 232

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

TAIR|locus:2200271 CCOAMT "caffeoyl-CoA 3-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 108/181 (59%), Positives = 143/181 (79%)

Query:    13 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 72
             D G  ++ML++++NAK TIEIGVFTGYSLL TAL +PEDG+ITAID+++E YE+GL  IK
Sbjct:    55 DEGHFLSMLVKIMNAKNTIEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIK 114

Query:    73 KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 132
             KAGVDHKINFI S+ L  LDQL+    ++  FD+AF DADK +Y N+HERL+KL+KVGGI
Sbjct:   115 KAGVDHKINFIHSDGLKALDQLVN---DKCEFDFAFADADKSSYVNFHERLLKLVKVGGI 171

Query:   133 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 192
               +DNTLW G VA  E+ VP+H R   R A+++ N+ LA DPRV++S +++GDGIT+CRR
Sbjct:   172 IAFDNTLWFGFVAEDEDGVPEHMR-EYRAALIEFNKKLALDPRVEVSQISIGDGITLCRR 230

Query:   193 I 193
             +
Sbjct:   231 L 231

GO:0005737 "cytoplasm" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

TAIR|locus:2124286 CCoAOMT1 "caffeoyl coenzyme A O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 107/187 (57%), Positives = 144/187 (77%)

Query:     7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 66
             +M T+ D GQ + ML++LVNAK T+EIGV+TGYSLL TAL +PEDG+I A+DVNRE YE+
Sbjct:    72 IMTTSADEGQFLNMLIKLVNAKNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENYEL 131

Query:    67 GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 126
             GLPII+KAGV HKI+F E  AL VLD+++   +N G++D+ FVDADKDNY NYH+RL+ L
Sbjct:   132 GLPIIEKAGVAHKIDFREGPALPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDL 191

Query:   127 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 186
             +K+GG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct:   192 VKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG 251

Query:   187 ITICRRI 193
             ITICRRI
Sbjct:   252 ITICRRI 258

GO:0005634 "nucleus" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009805 "coumarin biosynthetic process" evidence=RCA;IMP

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q7F8T6 ROMT-17 "Tricin synthase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 101/186 (54%), Positives = 140/186 (75%)

Query:     8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 67
             M + P+ GQL+++LL L  AK TIE+GVFTG S+L TAL IP+DG++ AIDV+RE +++G
Sbjct:   106 MSSPPEEGQLLSLLLNLTGAKNTIEVGVFTGCSVLATALAIPDDGKVVAIDVSREYFDLG 165

Query:    68 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 127
             LP+IKKAGV HK++F E  A+ +LD LL   ENEG FD+AFVDADK NY  YHERL++L+
Sbjct:   166 LPVIKKAGVAHKVDFREGAAMPILDNLLANEENEGKFDFAFVDADKGNYGEYHERLLRLV 225

Query:   128 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 187
             + GG+  YDNTLWGG+VA+ ++ V + F    R++I+  N  +A DPRV+   + + DGI
Sbjct:   226 RAGGVLAYDNTLWGGSVALEDDSVLEEFDQDIRRSIVAFNAKIAGDPRVEAVQLPVSDGI 285

Query:   188 TICRRI 193
             T+CRR+
Sbjct:   286 TLCRRL 291

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 102/186 (54%), Positives = 142/186 (76%)

Query:     8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 67
             MG   D    ++ML++++NAK TIEIGVFTGYSL   AL +PEDG+ITAID+++  Y +G
Sbjct:    50 MGVPVDESLFLSMLVKIINAKNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYNLG 109

Query:    68 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 127
             L  +KKAGVDHKINFI+S+A+  LDQLL   + E  +D+AFVDADK NY  + E+L+KL+
Sbjct:   110 LEFMKKAGVDHKINFIQSDAVRGLDQLLNGEKQE--YDFAFVDADKTNYVYFLEKLLKLV 167

Query:   128 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 187
             KVGGI  +DNTLW GT+   E +VP H R + R+A+L+ N+ LA DPRV+++ +++GDG+
Sbjct:   168 KVGGIIAFDNTLWFGTLIQKENEVPGHMR-AYREALLEFNKILARDPRVEIAQISIGDGL 226

Query:   188 TICRRI 193
             T+CRR+
Sbjct:   227 TLCRRL 232

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 105/190 (55%), Positives = 138/190 (72%)

Query:     8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 67
             M ++ D  QL+ MLL++  AK+TIE+GVFTGYSLL TAL +PEDG++ AID +RE+YEIG
Sbjct:    63 MQSSADEAQLLGMLLKMAGAKRTIEVGVFTGYSLLATALALPEDGKVVAIDPDRESYEIG 122

Query:    68 LPIIKKAGVDHKINFIESEALSVLDQLLKYSE---NEGSFDYAFVDADKDNYCNYHERLM 124
              P ++KAGV HK++F E + L  LD+LL        E +FD+AFVDADK NY  YHE+L+
Sbjct:   123 RPFLEKAGVAHKVDFREGKGLEKLDELLAEEAAAGREAAFDFAFVDADKPNYVKYHEQLL 182

Query:   125 KLLKVGGIAVYDNTLWGGTVAVPEEQ-VPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL 183
             +L++VGG  VYDNTLW GTVA+P +  + D  R  S  AI DLN  LA DPR+ +  +A+
Sbjct:   183 QLVRVGGHIVYDNTLWAGTVALPPDTPLSDLDRRFS-VAIRDLNSRLAADPRIDVCQLAI 241

Query:   184 GDGITICRRI 193
              DGITICRR+
Sbjct:   242 ADGITICRRL 251

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

ZFIN|ZDB-GENE-030131-1072 comtd1 "catechol-O-methyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 81/185 (43%), Positives = 117/185 (63%)

Query:     5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
             R +M  A +  QLMA L +L+ A KTIEIG++TGY+ L  AL +PE+G++ A ++N +  
Sbjct:   105 RNVMMVASEQAQLMANLAKLIEANKTIEIGLYTGYNALSLALVVPENGRVVACEINEDYV 164

Query:    65 EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
             +IG P   +AGV++KI+     A+  LD+LL   E  G +D+ F+DADK NY  Y+E+ +
Sbjct:   165 KIGKPFFAEAGVENKIDIRLKPAVETLDELLSAGE-AGMYDFVFIDADKKNYETYYEKSL 223

Query:   125 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184
             +L++ GGI   DN LWGG V  P E   D     S QAI  LN+ L  D R+ LS + +G
Sbjct:   224 QLVRKGGIVAIDNVLWGGRVINPAE---DDL---SSQAIDKLNKKLHKDERIDLSMLTVG 277

Query:   185 DGITI 189
             DG+T+
Sbjct:   278 DGLTL 282

GO:0008171 "O-methyltransferase activity" evidence=IEA

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 79/177 (44%), Positives = 114/177 (64%)

Query:    13 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 72
             D  QLMA L++L+ AKK IE+GV TGY+ L  AL +P++G++ A D+N +  +IG P+ K
Sbjct:    94 DQAQLMANLIKLIKAKKVIEVGVLTGYNALSMALALPDNGRVIACDINEDYAKIGKPLWK 153

Query:    73 KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 132
             +AGVDHKI+     A   LD+LL   E E +FD+AF+DADK++Y  Y+E+ ++L+K GGI
Sbjct:   154 EAGVDHKIDLRIKPATQTLDELLAGGEAE-TFDFAFIDADKESYNEYYEKCLRLIKKGGI 212

Query:   133 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITI 189
                DN L  G V  P +   D     + Q+I  LN  L  D RV +S + +GDG+T+
Sbjct:   213 IAIDNVLRCGMVLKPRK---DDL---ATQSIHHLNEKLVRDARVNISMIPMGDGVTL 263

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

TAIR|locus:2079557 OMTF3 "O-MTase family 3 protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 78/182 (42%), Positives = 112/182 (61%)

Query:    11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI 70
             +PD  QL+AML+ ++ AK+ IE+GV+TGYS L  AL +PE G++ A D +    E+    
Sbjct:   115 SPDQAQLLAMLVEILGAKRCIEVGVYTGYSSLAVALVLPESGRLVACDKDANALEVAKRY 174

Query:    71 IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 130
              + AGV HK+      A   L  +++  E E S+D+AF+DADK  Y  Y E L++L++VG
Sbjct:   175 YELAGVSHKVTVKHGLAAESLMSMIQNGE-ESSYDFAFLDADKAMYQEYFESLLRLVRVG 233

Query:   131 GIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 190
             G+ V DN LW G VA  +  V D    S R    + N+ L DD RV +S V++GDG+TIC
Sbjct:   234 GVIVIDNVLWHGWVA--DSTVNDERTISLR----NFNKKLMDDQRVSISMVSIGDGMTIC 287

Query:   191 RR 192
             R+
Sbjct:   288 RK 289

GO:0005576 "extracellular region" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

DICTYBASE|DDB_G0271590 omt1 "O-methyltransferase family 3 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 80/193 (41%), Positives = 119/193 (61%)

Query:     8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 67
             M T  +  Q   +LL+++NAKK I++GV+TG S L  AL++P+DG++T+ID  R+  E  
Sbjct:    59 MLTDGNQNQFFTLLLKVLNAKKAIDVGVYTGLSSLSFALSMPDDGKVTSIDCVRDYEECC 118

Query:    68 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 127
                 KKA VDHKIN +   A + L +L+   E+ G+FD+ F+DADKD+Y  Y+E  +KL+
Sbjct:   119 HLHWKKANVDHKINLVIDNAKNHLQKLIDNGES-GTFDFIFIDADKDSYDAYYELSLKLI 177

Query:   128 KVGGIAVYDNTLWGGTVAV------PEEQVPDHFRGS-SRQAILD----LNRSLADDPRV 176
             + GGI  +DN L+ G   V      PE+Q+   F G  S Q ++D    LN  +A+D RV
Sbjct:   178 RKGGIIAFDNILFFGATLVDHDSKKPEDQI---FLGCPSFQRMVDALKLLNEKIANDERV 234

Query:   177 QLSHVALGDGITI 189
               + + L DGIT+
Sbjct:   235 IKTMLPLSDGITL 247

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SLP8	CAMT_CITNA	2, ., 1, ., 1, ., 1, 0, 4	0.5454	0.9639	0.8060	N/A	no
Q9C5D7	CAMT3_ARATH	2, ., 1, ., 1, ., 1, 0, 4	0.6894	0.9742	0.8146	yes	no
O65862	CAMT1_POPTR	2, ., 1, ., 1, ., 1, 0, 4	0.5828	0.9639	0.7570	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.104	0.914
3rd Layer	2.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	1e-93
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	1e-93
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	2e-80
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	1e-45
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	2e-44
pfam13578	105	pfam13578, Methyltransf_24, Methyltransferase doma	1e-09
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-04
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	0.001
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	0.001
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	0.002

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score =  271 bits (694), Expect = 1e-93
 Identities = 102/186 (54%), Positives = 138/186 (74%), Gaps = 7/186 (3%)

Query: 8   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 67
           M  +P+ GQ ++MLL+L+ AK+T+EIGVFTGYSLL TAL +PEDG+ITA D++ E YEIG
Sbjct: 26  MQISPEEGQFLSMLLKLIGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDPEAYEIG 85

Query: 68  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 127
           LP I+KAGV  KI+F   +AL  L++L+K  +  G FD+ FVDADK NY NY+ERL++L+
Sbjct: 86  LPFIQKAGVADKISFRLGDALPTLEELVK-DKPLGEFDFIFVDADKSNYPNYYERLLELV 144

Query: 128 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 187
           KVGG+   DNTLW G VA P+++VP          + +LN+ LA D RV++S + +GDGI
Sbjct: 145 KVGGLIAIDNTLWFGKVAEPDDEVPKT------VRVRELNKLLASDERVEISMLPVGDGI 198

Query: 188 TICRRI 193
           T+CRRI
Sbjct: 199 TLCRRI 204

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score =  272 bits (696), Expect = 1e-93
 Identities = 111/190 (58%), Positives = 153/190 (80%), Gaps = 2/190 (1%)

Query: 5   RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
            + M    D G  ++ML++++NAK T+EIGVFTGYSLL TAL +PEDG+ITAID+++E Y
Sbjct: 47  LSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY 106

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
           E+GL  IKKAGVDHKINFI+S+ALS LDQLL  ++ +  FD+AFVDADK NY ++HE+L+
Sbjct: 107 EVGLEFIKKAGVDHKINFIQSDALSALDQLLN-NDPKPEFDFAFVDADKPNYVHFHEQLL 165

Query: 125 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184
           KL+KVGGI  +DNTLW G VA  E++VP+H R + R+A+L+ N+ LA DPRV++S +++G
Sbjct: 166 KLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMR-AYRKALLEFNKLLASDPRVEISQISIG 224

Query: 185 DGITICRRIF 194
           DG+T+CRR+ 
Sbjct: 225 DGVTLCRRLV 234

Length = 234

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score =  239 bits (611), Expect = 2e-80
 Identities = 106/187 (56%), Positives = 144/187 (77%)

Query: 7   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 66
           +M T+ D GQ + MLL+L+NAK T+EIGV+TGYSLL TAL +PEDG+I A+D+NRE YE+
Sbjct: 60  IMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYEL 119

Query: 67  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 126
           GLP+I+KAGV HKI+F E  AL VLDQ+++  +  G+FD+ FVDADKDNY NYH+RL+ L
Sbjct: 120 GLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDL 179

Query: 127 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 186
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 180 VKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG 239

Query: 187 ITICRRI 193
           IT+CRRI
Sbjct: 240 ITLCRRI 246

Length = 247

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score =  151 bits (383), Expect = 1e-45
 Identities = 78/187 (41%), Positives = 116/187 (62%), Gaps = 7/187 (3%)

Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
           + M  +PD  QL+AML++++ A++ IE+GV+TGYS L  AL +PE G + A + +  + E
Sbjct: 98  SQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLE 157

Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
           +     + AGV HK+N     A   L  +++  E   S+D+AFVDADK  Y +Y E L++
Sbjct: 158 VAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGE-GSSYDFAFVDADKRMYQDYFELLLQ 216

Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 185
           L++VGG+ V DN LW G VA P   V D    +   +I + N+ L DD RV +S V +GD
Sbjct: 217 LVRVGGVIVMDNVLWHGRVADP--LVND----AKTISIRNFNKKLMDDKRVSISMVPIGD 270

Query: 186 GITICRR 192
           G+TICR+
Sbjct: 271 GMTICRK 277

Length = 278

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score =  146 bits (371), Expect = 2e-44
 Identities = 72/182 (39%), Positives = 105/182 (57%), Gaps = 10/182 (5%)

Query: 12  PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 71
           P+ G L+ +L RL   K+ +EIG   GYS L  AL +P+DG++T I+ + E  EI    +
Sbjct: 45  PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENL 104

Query: 72  KKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 130
            +AGVD +I  +   +AL VL +LL     +GSFD  F+DADK +Y  Y ER + LL+ G
Sbjct: 105 AEAGVDDRIELLLGGDALDVLSRLL-----DGSFDLVFIDADKADYPEYLERALPLLRPG 159

Query: 131 GIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 190
           G+ V DN L+GG VA P  +       +  + + D N  L +DPR     + LGDG+ + 
Sbjct: 160 GLIVADNVLFGGRVADPSIRDAR----TQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLS 215

Query: 191 RR 192
           R+
Sbjct: 216 RK 217

Length = 219

>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 31  IEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 88
           +EIGV++G S L  A  + +   G++ +ID            ++KAG+  ++  +  ++L
Sbjct: 1   VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPGAEAG--ANLRKAGLADRVRLLRGDSL 58

Query: 89  SVLDQLLKYSENEGSFDYAFVDADKDNYCNYH--ERLMKLLKVGGIAVYDNT 138
             L +L      +GS D  F+D D          E  + LL  GGI V+ + 
Sbjct: 59  EALARL-----PDGSIDLLFIDGDHTYEAVLADLELWLPLLAPGGIIVFHDI 105

This family appears to be a methyltransferase domain. Length = 105

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 13/104 (12%)

Query: 31  IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVDHKINFIESEAL 88
           ++IG  TG   +  A   P   ++T +D++ E  E+     + A   +  +I F++ +A 
Sbjct: 6   LDIGCGTGSLAIELARLFP-GARVTGVDLSPEMLEL---ARENAKLALGPRITFVQGDAP 61

Query: 89  SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 132
             LD L         FD  F+     +     + L  LLK GG 
Sbjct: 62  DALDLL-------EGFDAVFIGGGGGDLLELLDALASLLKPGGR 98

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 27  AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 86
             K +++G  TGY   + A  +    ++  ID++ E  E      KK G +  + FI+ +
Sbjct: 4   GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYE-NVEFIQGD 62

Query: 87  ALSVLDQLLKYSENEGSFDYAFVDADKDNYCN---YHERLMKLLKVGGIAV 134
              +    L     + SFD    +   ++  +     E ++++LK GG+ +
Sbjct: 63  IEELPQLQL----EDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLI 109

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 12  PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 71
            DAG ++A L  +    + +E G  +G      A  +  +G +T  ++  +  +     +
Sbjct: 81  KDAGYIVARL-GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENL 139

Query: 72  KKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-ADKDNYCNYHERLMKLLKVG 130
            + G+  ++     +    +D        E   D  F+D  D  N     E +   LK G
Sbjct: 140 SEFGLGDRVTLKLGDVREGID--------EEDVDAVFLDLPDPWNVL---EHVSDALKPG 188

Query: 131 GIAV 134
           G+ V
Sbjct: 189 GVVV 192

Length = 256

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 22  LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN 81
           LRL      ++IG  TG   +  +L + E G++ A+D + +   +     +K GV + I 
Sbjct: 36  LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIV 95

Query: 82  FIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136
            I+ EA  +L  +         FD  F+    +          +++K GG  V D
Sbjct: 96  LIKGEAPEILFTI------NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVID 144

Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	100.0
PLN02589	247	caffeoyl-CoA O-methyltransferase	100.0
PLN02476	278	O-methyltransferase	100.0
COG4122	219	Predicted O-methyltransferase [General function pr	100.0
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	100.0
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	100.0
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.82
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.79
PRK04457	262	spermidine synthase; Provisional	99.78
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.74
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.74
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.74
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.73
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.72
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.72
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.72
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.72
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.71
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.7
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.7
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.7
PLN03075	296	nicotianamine synthase; Provisional	99.7
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.7
PRK07402	196	precorrin-6B methylase; Provisional	99.69
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.69
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.68
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.67
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.67
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.66
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.66
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.65
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.65
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.65
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.65
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.64
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.64
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.64
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.63
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.63
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.63
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.62
PRK00811	283	spermidine synthase; Provisional	99.62
PLN02366	308	spermidine synthase	99.62
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.62
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.62
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.61
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.61
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.61
COG4123	248	Predicted O-methyltransferase [General function pr	99.61
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	99.6
PRK01581	374	speE spermidine synthase; Validated	99.6
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.6
PLN02244	340	tocopherol O-methyltransferase	99.59
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.59
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.59
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.58
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.58
PRK11207	197	tellurite resistance protein TehB; Provisional	99.58
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.57
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.57
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.57
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.56
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.56
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.56
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	99.56
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.55
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.55
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.55
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.55
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.54
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.54
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.53
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.53
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.53
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.53
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.53
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.52
PLN02823	336	spermine synthase	99.52
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.51
PRK08317	241	hypothetical protein; Provisional	99.51
PRK04266	226	fibrillarin; Provisional	99.51
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.51
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.51
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.51
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.51
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.49
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.49
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.49
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.48
PRK12335	287	tellurite resistance protein TehB; Provisional	99.48
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.48
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.48
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.48
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.47
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.46
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.46
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.46
PRK14967	223	putative methyltransferase; Provisional	99.46
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.46
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.46
PRK14968	188	putative methyltransferase; Provisional	99.45
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.44
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.44
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.44
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.44
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.44
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.44
COG2890	280	HemK Methylase of polypeptide chain release factor	99.44
PRK06922	677	hypothetical protein; Provisional	99.43
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.43
PLN02336	475	phosphoethanolamine N-methyltransferase	99.43
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.43
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.43
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.43
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.43
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.42
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.42
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.42
PLN02490	340	MPBQ/MSBQ methyltransferase	99.4
PRK03612	521	spermidine synthase; Provisional	99.4
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.4
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.38
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.38
PLN02336	475	phosphoethanolamine N-methyltransferase	99.38
PTZ00146	293	fibrillarin; Provisional	99.38
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.37
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.37
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.37
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.36
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.36
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.35
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.35
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.35
TIGR03438	301	probable methyltransferase. This model represents	99.33
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.33
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.33
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.32
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.32
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.31
KOG2904	328	consensus Predicted methyltransferase [General fun	99.31
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.31
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.31
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.31
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.3
KOG4300	252	consensus Predicted methyltransferase [General fun	99.3
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.29
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	99.27
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.27
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.27
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.27
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.27
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.26
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	99.26
KOG1271	227	consensus Methyltransferases [General function pre	99.25
PLN02672	1082	methionine S-methyltransferase	99.25
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.24
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.24
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.23
TIGR00438	188	rrmJ cell division protein FtsJ.	99.23
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	99.22
PHA03412	241	putative methyltransferase; Provisional	99.22
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.21
PRK05785	226	hypothetical protein; Provisional	99.21
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.19
PRK06202	232	hypothetical protein; Provisional	99.19
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	99.19
PHA03411	279	putative methyltransferase; Provisional	99.17
PRK00536	262	speE spermidine synthase; Provisional	99.16
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.15
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.13
COG2521	287	Predicted archaeal methyltransferase [General func	99.13
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.12
COG2520	341	Predicted methyltransferase [General function pred	99.11
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.11
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.1
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.1
KOG2899	288	consensus Predicted methyltransferase [General fun	99.1
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.08
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.07
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	99.07
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.07
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.06
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	99.06
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.04
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.03
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.03
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	99.02
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.02
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.99
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.99
KOG2730	263	consensus Methylase [General function prediction o	98.98
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.97
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.96
KOG3010	261	consensus Methyltransferase [General function pred	98.95
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.92
KOG2361	264	consensus Predicted methyltransferase [General fun	98.91
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.88
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	98.86
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.86
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.85
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.83
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.83
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.82
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.79
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.79
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.77
PRK04148	134	hypothetical protein; Provisional	98.76
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.7
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.64
PRK10742	250	putative methyltransferase; Provisional	98.61
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.61
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.61
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.59
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	98.58
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.56
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.56
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.53
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.53
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.53
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.5
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.48
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.48
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.47
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.46
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.45
COG4076	252	Predicted RNA methylase [General function predicti	98.44
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.4
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.4
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.37
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.36
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.36
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.33
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.31
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.31
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.28
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.25
PF13679	141	Methyltransf_32: Methyltransferase domain	98.23
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	98.23
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	98.23
KOG3115	249	consensus Methyltransferase-like protein [General	98.2
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.17
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.15
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.1
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.1
KOG3201	201	consensus Uncharacterized conserved protein [Funct	98.1
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.08
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.02
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.02
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.0
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	98.0
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.91
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.86
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.85
COG3897	218	Predicted methyltransferase [General function pred	97.81
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.81
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.76
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.74
PHA01634	156	hypothetical protein	97.7
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.69
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.65
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.56
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.56
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.51
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.49
COG4798	238	Predicted methyltransferase [General function pred	97.48
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	97.47
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.43
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.37
KOG2940	325	consensus Predicted methyltransferase [General fun	97.26
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.26
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.25
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.21
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.18
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.18
COG2961	279	ComJ Protein involved in catabolism of external DN	97.08
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.06
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.01
KOG1227	351	consensus Putative methyltransferase [General func	96.98
COG4301	321	Uncharacterized conserved protein [Function unknow	96.97
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.97
COG0286	489	HsdM Type I restriction-modification system methyl	96.93
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.87
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.85
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	96.82
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	96.76
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.7
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.63
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.57
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.56
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.41
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.33
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	96.27
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.2
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	96.01
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.94
PRK11524	284	putative methyltransferase; Provisional	95.86
PRK13699	227	putative methylase; Provisional	95.86
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.82
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.8
PRK11524	284	putative methyltransferase; Provisional	95.68
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.62
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.53
KOG1331	293	consensus Predicted methyltransferase [General fun	95.46
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	95.42
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.41
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.39
PRK13699	227	putative methylase; Provisional	95.38
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	95.38
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.34
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	95.31
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	95.24
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	95.15
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	95.08
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	95.06
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	95.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	94.96
COG1568	354	Predicted methyltransferases [General function pre	94.94
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.89
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	94.84
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	94.68
KOG2078	495	consensus tRNA modification enzyme [RNA processing	94.59
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.58
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.57
PLN02740	381	Alcohol dehydrogenase-like	94.56
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	94.48
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	94.36
PLN02827	378	Alcohol dehydrogenase-like	94.35
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.25
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.25
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.17
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	94.13
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	94.03
KOG2360	413	consensus Proliferation-associated nucleolar prote	93.9
KOG2912	419	consensus Predicted DNA methylase [Function unknow	93.9
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	93.76
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.72
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	93.65
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	93.59
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	93.55
KOG2352	482	consensus Predicted spermine/spermidine synthase [	93.51
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	93.49
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	93.46
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	93.38
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	93.15
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.14
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	92.88
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	92.78
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	92.76
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	92.71
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.54
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	92.53
COG1565	370	Uncharacterized conserved protein [Function unknow	92.42
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	92.41
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	92.38
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.36
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	92.14
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	92.07
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	91.74
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	91.67
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	91.67
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	91.61
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	91.6
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	91.55
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	91.51
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	91.48
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	91.47
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	91.35
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.33
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	91.28
PF03269	177	DUF268: Caenorhabditis protein of unknown function	91.23
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	91.21
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	91.13
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.06
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	91.03
COG1255	129	Uncharacterized protein conserved in archaea [Func	90.98
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	90.94
KOG3924	419	consensus Putative protein methyltransferase invol	90.84
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	90.82
PLN02586	360	probable cinnamyl alcohol dehydrogenase	90.7
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	90.6
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	90.55
KOG0780	483	consensus Signal recognition particle, subunit Srp	90.48
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	90.18
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	90.15
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	90.14
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	90.11
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	90.04
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	89.9
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	89.87
PRK08114	395	cystathionine beta-lyase; Provisional	89.72
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	89.59
PLN02353	473	probable UDP-glucose 6-dehydrogenase	89.59
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	89.58
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	89.46
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	89.42
PRK06940	275	short chain dehydrogenase; Provisional	89.39
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	89.32
COG3315	297	O-Methyltransferase involved in polyketide biosynt	89.25
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	89.08
PRK03659	601	glutathione-regulated potassium-efflux system prot	88.99
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	88.95
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	88.94
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	88.94
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.76
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	88.72
PRK10669	558	putative cation:proton antiport protein; Provision	88.66
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	88.63
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	88.6
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	88.56
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	88.54
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	88.42
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	88.32
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	88.31
PRK08574	385	cystathionine gamma-synthase; Provisional	88.22
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	88.17
PRK07417	279	arogenate dehydrogenase; Reviewed	88.13
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	88.09
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	88.06
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	88.04
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	88.0
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	87.93
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	87.89
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	87.86
PRK07671	377	cystathionine beta-lyase; Provisional	87.79
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	87.76
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	87.68
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	87.66
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	87.64
TIGR00497	501	hsdM type I restriction system adenine methylase (	87.56
PRK09496	453	trkA potassium transporter peripheral membrane com	87.55
PRK10083	339	putative oxidoreductase; Provisional	87.5
PRK03562	621	glutathione-regulated potassium-efflux system prot	87.5
PRK08064	390	cystathionine beta-lyase; Provisional	87.36
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	87.3
PRK05939	397	hypothetical protein; Provisional	87.27
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	87.17
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	87.15
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	87.08
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	87.08
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	87.08
PTZ00357	1072	methyltransferase; Provisional	87.06
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.03
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	87.02
PRK06234	400	methionine gamma-lyase; Provisional	86.92
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	86.77
PRK09496	453	trkA potassium transporter peripheral membrane com	86.76
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.72
KOG0781	587	consensus Signal recognition particle receptor, al	86.63
PRK08324	681	short chain dehydrogenase; Validated	86.42
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	86.4
PTZ00354	334	alcohol dehydrogenase; Provisional	86.32
PLN02514	357	cinnamyl-alcohol dehydrogenase	86.19
PRK05967	395	cystathionine beta-lyase; Provisional	86.05
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	85.98
PRK09028	394	cystathionine beta-lyase; Provisional	85.94
PRK07877	722	hypothetical protein; Provisional	85.83
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.75
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	85.66
PRK08328	231	hypothetical protein; Provisional	85.59
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	85.58
PRK08655	437	prephenate dehydrogenase; Provisional	85.57
TIGR00853	95	pts-lac PTS system, lactose/cellobiose family IIB	85.55
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	85.55
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	85.3
KOG2920	282	consensus Predicted methyltransferase [General fun	85.16
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	85.12
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	85.0
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	84.97
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	84.81
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	84.74
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	84.63
PRK07582	366	cystathionine gamma-lyase; Validated	84.5
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	84.25
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	84.16
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	84.05
COG4121	252	Uncharacterized conserved protein [Function unknow	83.99
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	83.3
PRK07811	388	cystathionine gamma-synthase; Provisional	83.16
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	83.08
PRK08223	287	hypothetical protein; Validated	82.98
PRK08045	386	cystathionine gamma-synthase; Provisional	82.81
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	82.75
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	82.5
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	82.46
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	82.45
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	82.44
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	82.3
PLN02702	364	L-idonate 5-dehydrogenase	82.18
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	82.12
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	82.1
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	81.98
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	81.98
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	81.96
COG4017	254	Uncharacterized protein conserved in archaea [Func	81.74
PRK07063	260	short chain dehydrogenase; Provisional	81.7
PRK08507	275	prephenate dehydrogenase; Validated	81.65
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	81.62
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	81.58
PRK06153	393	hypothetical protein; Provisional	81.58
PRK07411	390	hypothetical protein; Validated	81.48

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=100.00  E-value=1.4e-39  Score=242.68  Aligned_cols=182  Identities=44%  Similarity=0.791  Sum_probs=162.7

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      ++.|++++.++++|..+++..++++||||||++|++++++|+.++++++++++|.+++..+.|+++++.+++.++++++.
T Consensus        24 ~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~  103 (205)
T PF01596_consen   24 LPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE  103 (205)
T ss_dssp             TGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred             CCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            46788999999999999999999999999999999999999999888999999999999999999999999988999999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHH
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  164 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  164 (194)
                      +|+.+.++.+..+ ...++||+||+|+.+.+|..+++.+.++|+|||+|+++|++|+|.+..+....+      ....++
T Consensus       104 gda~~~l~~l~~~-~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~------~~~~ir  176 (205)
T PF01596_consen  104 GDALEVLPELAND-GEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDP------KTVAIR  176 (205)
T ss_dssp             S-HHHHHHHHHHT-TTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSH------HHHHHH
T ss_pred             eccHhhHHHHHhc-cCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchhh------hHHHHH
Confidence            9999999887543 112589999999999999999999999999999999999999999988743211      445599


Q ss_pred             HHHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414          165 DLNRSLADDPRVQLSHVALGDGITICRRI  193 (194)
Q Consensus       165 ~~~~~l~~~~~~~~~~~p~~~G~~i~~~~  193 (194)
                      +|++++.++|+|+++++|+|+|+.|+|||
T Consensus       177 ~f~~~i~~d~~~~~~llpigdGl~l~~K~  205 (205)
T PF01596_consen  177 EFNEYIANDPRFETVLLPIGDGLTLARKR  205 (205)
T ss_dssp             HHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred             HHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence            99999999999999999999999999996

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=2.2e-37  Score=236.45  Aligned_cols=187  Identities=57%  Similarity=1.011  Sum_probs=165.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +.+.+++.++++|..+++..++++|||||+++|++++++|..++++++++++|.+++..+.|+++++.+|+.++++++.|
T Consensus        59 ~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G  138 (247)
T PLN02589         59 NIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG  138 (247)
T ss_pred             CCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEec
Confidence            56788999999999999999999999999999999999999998789999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCC-cccchHHHHH
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDH-FRGSSRQAIL  164 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~  164 (194)
                      ++.+.++.+.......++||+||+|+++..|..+++.+.++|+|||+|+++|++|+|.+.++....++. .+. .+.+++
T Consensus       139 ~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~-~~~~ir  217 (247)
T PLN02589        139 PALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRY-YRDFVL  217 (247)
T ss_pred             cHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHH-HHHHHH
Confidence            999999887432111268999999999999999999999999999999999999999988774322111 122 344689


Q ss_pred             HHHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414          165 DLNRSLADDPRVQLSHVALGDGITICRRI  193 (194)
Q Consensus       165 ~~~~~l~~~~~~~~~~~p~~~G~~i~~~~  193 (194)
                      +|++.+.++|+|+++++|+|+|++|++|+
T Consensus       218 ~fn~~v~~d~~~~~~llPigDGl~l~~k~  246 (247)
T PLN02589        218 ELNKALAADPRIEICMLPVGDGITLCRRI  246 (247)
T ss_pred             HHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence            99999999999999999999999999997

>PLN02476 O-methyltransferase

Probab=100.00  E-value=2.3e-36  Score=233.42  Aligned_cols=181  Identities=41%  Similarity=0.714  Sum_probs=164.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +.+.+++.++++|..+++..++++||||||++|++++++|..++++++++++|.+++.++.|+++++.+|+.++++++.+
T Consensus        98 ~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~G  177 (278)
T PLN02476         98 SQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHG  177 (278)
T ss_pred             CccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence            46789999999999999999999999999999999999999998789999999999999999999999999989999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHH
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  165 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  165 (194)
                      |+.+.++.+..+ ...++||+||+|+++..+..+++.+.++|+|||+|+++|++|+|.+.++.... .     .+.++++
T Consensus       178 dA~e~L~~l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d-~-----~t~~ir~  250 (278)
T PLN02476        178 LAAESLKSMIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVND-A-----KTISIRN  250 (278)
T ss_pred             CHHHHHHHHHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCC-H-----HHHHHHH
Confidence            999998876322 11358999999999999999999999999999999999999999988774322 1     3457999


Q ss_pred             HHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414          166 LNRSLADDPRVQLSHVALGDGITICRRI  193 (194)
Q Consensus       166 ~~~~l~~~~~~~~~~~p~~~G~~i~~~~  193 (194)
                      |++++.++|+|+++++|+|||++|++|+
T Consensus       251 fn~~v~~d~~~~~~llPigDGl~i~~K~  278 (278)
T PLN02476        251 FNKKLMDDKRVSISMVPIGDGMTICRKR  278 (278)
T ss_pred             HHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence            9999999999999999999999999985

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=100.00  E-value=2e-36  Score=225.65  Aligned_cols=177  Identities=41%  Similarity=0.680  Sum_probs=160.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-cch
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEA   87 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~   87 (194)
                      ...++++++|..+++..++++|||||++.|+|++|||..++++++++++|.+++..+.|++++++.++.++++++. +|+
T Consensus        42 i~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda  121 (219)
T COG4122          42 IIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA  121 (219)
T ss_pred             CCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH
Confidence            3449999999999999999999999999999999999999888999999999999999999999999998899988 699


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHH
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  167 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  167 (194)
                      .+.+...     ..++||+||+|+++.+|..+++.+.++|+|||+|+++|++++|.+..+..   +..+. ....+++|+
T Consensus       122 l~~l~~~-----~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~---~~~~~-~~~~~~~~~  192 (219)
T COG4122         122 LDVLSRL-----LDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSI---RDART-QVRGVRDFN  192 (219)
T ss_pred             HHHHHhc-----cCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccc---hhHHH-HHHHHHHHH
Confidence            9988762     15899999999999999999999999999999999999999998877743   22333 566699999


Q ss_pred             HHhhcCCCeEEEeeecCCeeEEEEEcC
Q 029414          168 RSLADDPRVQLSHVALGDGITICRRIF  194 (194)
Q Consensus       168 ~~l~~~~~~~~~~~p~~~G~~i~~~~~  194 (194)
                      +++.++|+++++++|+|+|+++++|++
T Consensus       193 ~~~~~~~~~~t~~lP~gDGl~v~~k~~  219 (219)
T COG4122         193 DYLLEDPRYDTVLLPLGDGLLLSRKRG  219 (219)
T ss_pred             HHHhhCcCceeEEEecCCceEEEeecC
Confidence            999999999999999999999999975

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=5.6e-36  Score=228.75  Aligned_cols=186  Identities=60%  Similarity=1.040  Sum_probs=167.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +.+++.+..+++|..+++..++++|||+|||+|+++++++..++++++++++|.+++.++.|+++++.+++.++++++.+
T Consensus        48 ~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~g  127 (234)
T PLN02781         48 SEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQS  127 (234)
T ss_pred             cccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence            45688999999999999999999999999999999999999987789999999999999999999999999889999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHH
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  165 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  165 (194)
                      |+.+.++.+..+ ...++||+||+|+.++.+..+++.+.++|+|||+|+++|++|+|.+.++....+++.+. ....+++
T Consensus       128 da~~~L~~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~-~~~~ir~  205 (234)
T PLN02781        128 DALSALDQLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRA-YRKALLE  205 (234)
T ss_pred             cHHHHHHHHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhH-HHHHHHH
Confidence            999988775321 11358999999999999999999999999999999999999999998876544444444 6678999


Q ss_pred             HHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414          166 LNRSLADDPRVQLSHVALGDGITICRRI  193 (194)
Q Consensus       166 ~~~~l~~~~~~~~~~~p~~~G~~i~~~~  193 (194)
                      |++++.++|+++++++|+|+|++|++|+
T Consensus       206 ~~~~i~~~~~~~~~~lp~gdG~~i~~k~  233 (234)
T PLN02781        206 FNKLLASDPRVEISQISIGDGVTLCRRL  233 (234)
T ss_pred             HHHHHhhCCCeEEEEEEeCCccEEEEEe
Confidence            9999999999999999999999999986

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.7e-34  Score=210.55  Aligned_cols=186  Identities=57%  Similarity=0.965  Sum_probs=168.4

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      +..|.++++.++++.++++..+++++||+|+.+|++++.+|..+|++++|+++|++++.++.+.+..+..++...+++++
T Consensus        52 ~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~  131 (237)
T KOG1663|consen   52 GSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIE  131 (237)
T ss_pred             ccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeee
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHH
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  164 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  164 (194)
                      +++.+.++++... .+.+.||++|+|+++.+|..+++++.+++|+||+|+++|++|+|.+.++....+.+.+. .+.. -
T Consensus       132 g~a~esLd~l~~~-~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~-~r~~-~  208 (237)
T KOG1663|consen  132 GPALESLDELLAD-GESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRS-IREA-L  208 (237)
T ss_pred             cchhhhHHHHHhc-CCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhh-hhhh-h
Confidence            9999999887554 24578999999999999999999999999999999999999999777776655555554 2222 3


Q ss_pred             HHHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414          165 DLNRSLADDPRVQLSHVALGDGITICRRI  193 (194)
Q Consensus       165 ~~~~~l~~~~~~~~~~~p~~~G~~i~~~~  193 (194)
                      +++++|..+|++..+.+|+|+|+++|+|+
T Consensus       209 ~~n~~l~~D~rV~~s~~~igdG~~i~~k~  237 (237)
T KOG1663|consen  209 NLNKKLARDPRVYISLLPIGDGITICRKR  237 (237)
T ss_pred             hhhhHhccCcceeeEeeeccCceeeeccC
Confidence            99999999999999999999999999985

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.82  E-value=1.1e-18  Score=126.16  Aligned_cols=121  Identities=27%  Similarity=0.282  Sum_probs=108.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .+.++...+.-..++..++.+++|||||+|..++.++...+ .++++++|.++++++..++|.++++++ |++++.+++.
T Consensus        17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap   94 (187)
T COG2242          17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAP   94 (187)
T ss_pred             CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccch
Confidence            56777777777777788899999999999999999996555 999999999999999999999999965 9999999999


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +.++.+       .+||.||+.+. ......++.++..|||||.||++.+.
T Consensus        95 ~~L~~~-------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242          95 EALPDL-------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             HhhcCC-------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            988764       48999999988 78889999999999999999998655

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.79  E-value=9.1e-19  Score=119.10  Aligned_cols=104  Identities=23%  Similarity=0.388  Sum_probs=87.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..+++..+ +.+++++|+++++++.+++++...+..++++++++|+ ......      .++||
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D   72 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFD   72 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCC
Confidence            467999999999999999999655 8899999999999999999997777778999999999 322222      46799


Q ss_pred             EEEEeC-Cc------cccHHHHHHHHhcccCCeEEEEec
Q 029414          106 YAFVDA-DK------DNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       106 ~i~id~-~~------~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +|++.. ..      .....+++.+.+.|+|||+++++.
T Consensus        73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999988 32      234567999999999999999964

...

>PRK04457 spermidine synthase; Provisional

Probab=99.78  E-value=3.1e-17  Score=127.45  Aligned_cols=124  Identities=17%  Similarity=0.184  Sum_probs=101.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      |....-++...++..+....++++|||||||+|.++.+++...+ +.+++++|++++.++.+++++...+..++++++.+
T Consensus        46 P~~l~~~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~  124 (262)
T PRK04457         46 PSELELAYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEA  124 (262)
T ss_pred             cccccCHHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEEC
Confidence            33334456666666666566789999999999999999999886 88999999999999999999876555568999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCcc-------ccHHHHHHHHhcccCCeEEEEe
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+.+++...      .++||+|++|....       ....+++.+.+.|+|||+++++
T Consensus       125 Da~~~l~~~------~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        125 DGAEYIAVH------RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             CHHHHHHhC------CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            999887653      46899999997421       2378999999999999999996

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.74  E-value=1.8e-16  Score=118.61  Aligned_cols=121  Identities=24%  Similarity=0.332  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414           12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   91 (194)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   91 (194)
                      .+...+........++.+|||+|||+|..++.++...++.++++++|+++++++.+++++..+++.+++.++.+|..+.+
T Consensus        26 ~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l  105 (198)
T PRK00377         26 EEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL  105 (198)
T ss_pred             HHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH
Confidence            44444433334455778999999999999999988765568999999999999999999999886668999999998766


Q ss_pred             HHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414           92 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +..      .+.||.||+++.......+++.+.+.|+|||.++++..
T Consensus       106 ~~~------~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        106 FTI------NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             hhc------CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence            553      36899999977666778899999999999999998543

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.74  E-value=4e-17  Score=120.22  Aligned_cols=102  Identities=23%  Similarity=0.332  Sum_probs=87.9

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+..++...+ .++|+++|.++++++.++++.+..+++ +++++++|+.+. ..       .++
T Consensus        40 ~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~-~~-------~~~  109 (181)
T TIGR00138        40 YLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDF-QH-------EEQ  109 (181)
T ss_pred             hcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhc-cc-------cCC
Confidence            34688999999999999999987665 789999999999999999999988876 699999998774 11       368


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ||+|++++ ..+...+++.+.+.|+|||.+++.
T Consensus       110 fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       110 FDVITSRA-LASLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             ccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence            99999987 556778889999999999999985

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.74  E-value=6.6e-17  Score=111.62  Aligned_cols=117  Identities=23%  Similarity=0.289  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414           12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   91 (194)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   91 (194)
                      ++....+.......+..+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...+.+ +++++.+|+....
T Consensus         5 ~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~   82 (124)
T TIGR02469         5 REVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEAL   82 (124)
T ss_pred             HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccC
Confidence            34444444444455567999999999999999999876 689999999999999999999988776 7899888876433


Q ss_pred             HHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           92 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +..      .++||.|+++.......++++.+.+.|+|||.+++.
T Consensus        83 ~~~------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        83 EDS------LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             hhh------cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence            322      368999999876666778999999999999999986

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.73  E-value=3.4e-16  Score=116.03  Aligned_cols=119  Identities=27%  Similarity=0.296  Sum_probs=97.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .+.+...+.+...+...++.+|||+|||+|..+..++...+ +.+++++|+++++++.+++++...+++ +++++.+|..
T Consensus        14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~   91 (187)
T PRK08287         14 MTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAP   91 (187)
T ss_pred             CchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCch
Confidence            34445555555555556788999999999999999998875 789999999999999999999988875 7999998874


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .   .+      .++||+|+++........+++.+.+.|+|||+++++..
T Consensus        92 ~---~~------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287         92 I---EL------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             h---hc------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence            2   11      35799999987666677889999999999999999653

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.72  E-value=5.8e-16  Score=114.40  Aligned_cols=101  Identities=18%  Similarity=0.259  Sum_probs=87.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..++.++...+ +++|+++|.++++++.++++.+..+++ +++++++|+.+...        .++||
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~--------~~~fD  114 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ--------EEKFD  114 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC--------CCCcc
Confidence            478999999999999999998765 789999999999999999999999986 59999999876421        36899


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +|+++. ..+...+++.+.+.|+|||.+++..
T Consensus       115 lV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        115 VVTSRA-VASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             EEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            999976 3566788999999999999999863

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.72  E-value=4.9e-17  Score=124.12  Aligned_cols=113  Identities=19%  Similarity=0.260  Sum_probs=84.1

Q ss_pred             HHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414           20 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        20 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      .+....++.+|||+|||+|..+..+++..++.++|+++|+++++++.+++++...+.. +++++++|+.+....      
T Consensus        41 ~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~------  113 (233)
T PF01209_consen   41 KLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFP------  113 (233)
T ss_dssp             HHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-------
T ss_pred             hccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCC------
Confidence            3344567789999999999999999998876899999999999999999999988876 999999999775221      


Q ss_pred             CCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          100 NEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       100 ~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                       +++||.|.+...   .++....++++.+.|||||.+++-+...
T Consensus       114 -d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~  156 (233)
T PF01209_consen  114 -DNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK  156 (233)
T ss_dssp             -TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             -CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence             589999998865   4677889999999999999999866543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.72  E-value=6.8e-17  Score=121.99  Aligned_cols=118  Identities=26%  Similarity=0.351  Sum_probs=98.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      ..+.|.....+...+...++.+|||+|||+|+.+..+++..+++++|+++|+++++++.++++++..+.. +++++.+|+
T Consensus        58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~  136 (212)
T PRK13942         58 TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDG  136 (212)
T ss_pred             EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCc
Confidence            4567777777777777778899999999999999999988765789999999999999999999988875 899999998


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+..+.       .++||+|++++..+...   +.+.+.|+|||.+++.
T Consensus       137 ~~~~~~-------~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        137 TLGYEE-------NAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP  175 (212)
T ss_pred             ccCCCc-------CCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence            654322       36899999987654443   4567889999999984

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=5.2e-17  Score=119.92  Aligned_cols=116  Identities=23%  Similarity=0.298  Sum_probs=100.4

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      ...+.|...+.|-.++...++.+|||||||+|+.+..+|+..   ++|+++|..++..+.|+++++..++. |+.+.++|
T Consensus        53 qtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gD  128 (209)
T COG2518          53 QTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYE-NVTVRHGD  128 (209)
T ss_pred             ceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECC
Confidence            556778888888888889999999999999999999999985   49999999999999999999999987 69999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ...-++.       ..+||.|++.+.......   .+.+.|++||.+++-
T Consensus       129 G~~G~~~-------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P  168 (209)
T COG2518         129 GSKGWPE-------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP  168 (209)
T ss_pred             cccCCCC-------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence            9776555       479999999987555433   356899999999994

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.71  E-value=1.2e-16  Score=120.10  Aligned_cols=117  Identities=22%  Similarity=0.321  Sum_probs=93.1

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      .+...+.+...+...++.+|||+|||+|+.+..++..+++.++|+++|+++++++.+++++...++.++++++.+|+.+.
T Consensus        57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~  136 (205)
T PRK13944         57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG  136 (205)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence            34444444444445566899999999999999999887656899999999999999999999988876799999998764


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           91 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ++.       ..+||+|+++.....   +.+.+.+.|+|||.|++..
T Consensus       137 ~~~-------~~~fD~Ii~~~~~~~---~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        137 LEK-------HAPFDAIIVTAAAST---IPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             Ccc-------CCCccEEEEccCcch---hhHHHHHhcCcCcEEEEEE
Confidence            332       368999999876443   3356789999999999853

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.70  E-value=1.4e-16  Score=120.96  Aligned_cols=107  Identities=21%  Similarity=0.323  Sum_probs=94.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||||..++.+++..+ .++|+++|+++.+++.++++....+..+ ++++++|+++..  +     .+++||
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LP--f-----~D~sFD  121 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLP--F-----PDNSFD  121 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCC--C-----CCCccC
Confidence            689999999999999999999998 8999999999999999999999888764 999999997753  2     268999


Q ss_pred             EEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414          106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus       106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      ++.+.-.   ..+...+++++.|.|||||.+++-+...+
T Consensus       122 ~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p  160 (238)
T COG2226         122 AVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP  160 (238)
T ss_pred             EEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence            9998854   67889999999999999999998776543

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.70  E-value=4.4e-16  Score=129.23  Aligned_cols=164  Identities=22%  Similarity=0.249  Sum_probs=120.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      ......+++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.+++++++.++. +++++.+|+.+
T Consensus       236 ~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~  314 (434)
T PRK14901        236 VQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRN  314 (434)
T ss_pred             EECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhh
Confidence            33445556666666667789999999999999999998765689999999999999999999999986 69999999876


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCcc---------c----------------cHHHHHHHHhcccCCeEEEEecccccccc
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADKD---------N----------------YCNYHERLMKLLKVGGIAVYDNTLWGGTV  144 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~  144 (194)
                      .......   ..++||.|++|++.+         +                ....++.+++.|||||.|+...+....  
T Consensus       315 ~~~~~~~---~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~--  389 (434)
T PRK14901        315 LLELKPQ---WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP--  389 (434)
T ss_pred             ccccccc---ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh--
Confidence            5321100   036799999996521         1                246788999999999999987655321  


Q ss_pred             cCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEE-----eeec---CCeeEEEEEcC
Q 029414          145 AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS-----HVAL---GDGITICRRIF  194 (194)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~p~---~~G~~i~~~~~  194 (194)
                         .++            .......+.++|+|+..     ++|-   .+|+-+|+.+|
T Consensus       390 ---~En------------e~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k  432 (434)
T PRK14901        390 ---AEN------------EAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRK  432 (434)
T ss_pred             ---hhH------------HHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence               111            33444455668888755     3453   49999998765

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.70  E-value=1.8e-16  Score=119.97  Aligned_cols=116  Identities=28%  Similarity=0.385  Sum_probs=94.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      +.+...+.+...+...++.+|||+|||+|+.+..++...+++++|+++|+++++++.|++++...++. +++++.+|+.+
T Consensus        61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~  139 (215)
T TIGR00080        61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQ  139 (215)
T ss_pred             chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCccc
Confidence            44555556666666778899999999999999999998765688999999999999999999999875 89999999876


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+.       .++||+|++++.....   .+.+.+.|+|||++++.
T Consensus       140 ~~~~-------~~~fD~Ii~~~~~~~~---~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       140 GWEP-------LAPYDRIYVTAAGPKI---PEALIDQLKEGGILVMP  176 (215)
T ss_pred             CCcc-------cCCCCEEEEcCCcccc---cHHHHHhcCcCcEEEEE
Confidence            4332       3689999998765443   35577899999999984

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.70  E-value=2e-16  Score=123.48  Aligned_cols=120  Identities=13%  Similarity=0.167  Sum_probs=98.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH-cCCCCcEEEEecch
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEA   87 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~   87 (194)
                      ..+..+.+|..+... ++++|+|||||.| .+++.++....++++++++|.++++++.|++.+.. .++.++++|..+|+
T Consensus       108 L~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da  186 (296)
T PLN03075        108 LSKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV  186 (296)
T ss_pred             HHHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch
Confidence            445566777666655 8899999999955 56666665554589999999999999999999965 78888899999999


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCC----ccccHHHHHHHHhcccCCeEEEEec
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDAD----KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~----~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+....       .++||+||+++.    +++...+++.+.+.|+|||++++..
T Consensus       187 ~~~~~~-------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        187 MDVTES-------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             hhcccc-------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            875322       368999999952    5788999999999999999999975

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.70  E-value=7.4e-17  Score=120.97  Aligned_cols=119  Identities=24%  Similarity=0.309  Sum_probs=94.6

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      ...+.|...+.+-..+...++.+|||||||+|+.+..++....+.++|+++|.+++..+.|+++++..+.. |+.++.+|
T Consensus        53 ~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gd  131 (209)
T PF01135_consen   53 QTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGD  131 (209)
T ss_dssp             EEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-
T ss_pred             eechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcc
Confidence            45567777777777787889999999999999999999998876789999999999999999999999876 89999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .....+.       ..+||.|++.+..+...   ..+.+.|++||++|+-
T Consensus       132 g~~g~~~-------~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  132 GSEGWPE-------EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVAP  171 (209)
T ss_dssp             GGGTTGG-------G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEE
T ss_pred             hhhcccc-------CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEEE
Confidence            8775544       37899999998755443   3466889999999994

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.69  E-value=9.5e-16  Score=114.49  Aligned_cols=122  Identities=24%  Similarity=0.254  Sum_probs=99.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      ..+.++..+++...+...++.+|||+|||+|..+..++...+ +++++++|.++++++.++++++..+.+ +++++.+|+
T Consensus        22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~   99 (196)
T PRK07402         22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSA   99 (196)
T ss_pred             CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECch
Confidence            456667777766666666778999999999999999987765 789999999999999999999988875 799999998


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .+.+..+      ...+|.++++.. .....+++.+.+.|+|||.+++...
T Consensus       100 ~~~~~~~------~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        100 PECLAQL------APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             HHHHhhC------CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence            7754443      245788888764 3456889999999999999999753

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.69  E-value=2.8e-16  Score=112.69  Aligned_cols=108  Identities=27%  Similarity=0.387  Sum_probs=90.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .+..+|||+|||+|..+..++....++.+++++|+++++++.|+++++..+.+ ++++.++|..+ ++...     .++|
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~~~   74 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EEKF   74 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----STTE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CCCe
Confidence            35689999999999999999955444899999999999999999999999988 99999999988 44310     1689


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      |+|++...   ..+....++.+.+.|+++|.+++.+..
T Consensus        75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            99999865   445667899999999999999997765

...

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.68  E-value=2.5e-15  Score=124.40  Aligned_cols=125  Identities=21%  Similarity=0.296  Sum_probs=100.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .......+++..++...++.+|||+|||+|..|..++..++.+++|+++|+++.+++.+++++++.++. ++++..+|+.
T Consensus       220 ~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~  298 (431)
T PRK14903        220 TVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAE  298 (431)
T ss_pred             EEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence            344455566666666777889999999999999999998865789999999999999999999999986 6999999987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCcc-------------------------ccHHHHHHHHhcccCCeEEEEecccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKD-------------------------NYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      +.....      .++||.|++|++..                         .....++.+++.|+|||.+++..+..
T Consensus       299 ~l~~~~------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        299 RLTEYV------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             hhhhhh------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            653222      36799999997521                         12456888999999999999987653

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.67  E-value=4.8e-15  Score=116.53  Aligned_cols=119  Identities=14%  Similarity=0.266  Sum_probs=94.8

Q ss_pred             CCCHHHHHHHHHHHH----HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            9 GTAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      .+.++++.++...+.    ..++.+|||+|||+|..++.++...+ +.+++++|+++.+++.|++++..+++.++++++.
T Consensus       100 ipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~  178 (284)
T TIGR03533       100 IPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQ  178 (284)
T ss_pred             cCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            355666666665543    12457999999999999999999876 7899999999999999999999998877899999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCc----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|..+.++        .++||+|+++++.                            ..+..+++.+.+.|+|||.+++.
T Consensus       179 ~D~~~~~~--------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e  250 (284)
T TIGR03533       179 SDLFAALP--------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE  250 (284)
T ss_pred             CchhhccC--------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            99865321        2579999998541                            01245678888999999999985

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.67  E-value=1.4e-15  Score=118.06  Aligned_cols=103  Identities=18%  Similarity=0.220  Sum_probs=88.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++..   +.+|+++|+++++++.|+++....++.++++++++|+.+..+..      .++|
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~f  113 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPV  113 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCC
Confidence            35679999999999999999985   56999999999999999999998888778999999998764332      4689


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+|++...   ..+...+++.+.+.|||||++++.
T Consensus       114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            99998764   346678899999999999999864

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.66  E-value=1.2e-14  Score=113.23  Aligned_cols=119  Identities=15%  Similarity=0.212  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH
Q 029414           13 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   92 (194)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~   92 (194)
                      ....+...++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.+++++++.++. ++++...|+.....
T Consensus        58 ~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~  136 (264)
T TIGR00446        58 ASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGA  136 (264)
T ss_pred             HHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhh
Confidence            33444444555556789999999999999999998865689999999999999999999999986 79999999866422


Q ss_pred             HHhhcCCCCCceeEEEEeCCcc-------------------------ccHHHHHHHHhcccCCeEEEEeccc
Q 029414           93 QLLKYSENEGSFDYAFVDADKD-------------------------NYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        93 ~~~~~~~~~~~fD~i~id~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      .       .+.||.|++|++..                         ....+++.++++|||||+|+.....
T Consensus       137 ~-------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       137 A-------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             h-------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            2       35699999996521                         1245788899999999999987654

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.66  E-value=7.5e-16  Score=112.51  Aligned_cols=110  Identities=23%  Similarity=0.393  Sum_probs=89.1

Q ss_pred             HHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHh
Q 029414           16 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   95 (194)
Q Consensus        16 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~   95 (194)
                      .+|...+...+.++|||+|||+|..++.++...+ ..+++++|+++.+++.++++++.+++++ ++++.+|..+..+   
T Consensus        21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~---   95 (170)
T PF05175_consen   21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP---   95 (170)
T ss_dssp             HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC---
T ss_pred             HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc---
Confidence            3555545455788999999999999999999876 7789999999999999999999999875 9999999866432   


Q ss_pred             hcCCCCCceeEEEEeCCc----c----ccHHHHHHHHhcccCCeEEEE
Q 029414           96 KYSENEGSFDYAFVDADK----D----NYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~~----~----~~~~~~~~~~~~L~~gG~lv~  135 (194)
                           .++||+|+++++.    .    ....+++.+.++|+|||.+++
T Consensus        96 -----~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen   96 -----DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             -----TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -----ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence                 3789999999762    1    246778899999999999965

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.65  E-value=6.1e-15  Score=122.84  Aligned_cols=125  Identities=21%  Similarity=0.272  Sum_probs=100.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      +........++...+...++.+|||+|||+|..+..++...++.++++++|+++.+++.++++++..++. +++++++|+
T Consensus       232 ~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~  310 (444)
T PRK14902        232 ITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDA  310 (444)
T ss_pred             EEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCc
Confidence            3445555666666666667789999999999999999998754789999999999999999999999986 599999998


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCCccc-------------------------cHHHHHHHHhcccCCeEEEEeccc
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      .+....+      .++||+|++|++...                         ...+++.+.+.|+|||.+++..+.
T Consensus       311 ~~~~~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs  381 (444)
T PRK14902        311 RKVHEKF------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT  381 (444)
T ss_pred             ccccchh------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            7654333      257999999975210                         135788899999999999986554

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.65  E-value=2.4e-15  Score=114.99  Aligned_cols=110  Identities=17%  Similarity=0.363  Sum_probs=90.6

Q ss_pred             HHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           21 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        21 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      .+...++.+|||+|||+|..+..+++..++.++++++|+++++++.+++++...+.+ +++++.+|+.+..  +     .
T Consensus        40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~--~-----~  111 (231)
T TIGR02752        40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAMELP--F-----D  111 (231)
T ss_pred             hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhcCC--C-----C
Confidence            334446789999999999999999998765789999999999999999999887764 8999999986531  1     1


Q ss_pred             CCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          101 EGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       101 ~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .++||+|++...   .+++..+++.+.+.|+|||.+++.+.
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            468999998743   45677889999999999999998654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=3e-15  Score=115.72  Aligned_cols=124  Identities=17%  Similarity=0.217  Sum_probs=104.8

Q ss_pred             cCCCCHHHHHHHHHHHH---HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414            7 MMGTAPDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   83 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~   83 (194)
                      -++++..+.+.+..++.   +.++++|||||||.|..++++|+.+  +.+|+++++|++..+.+++++...|++.++++.
T Consensus        50 ~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~  127 (283)
T COG2230          50 DMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR  127 (283)
T ss_pred             CCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE
Confidence            34566666666666665   5578999999999999999999986  689999999999999999999999999899999


Q ss_pred             ecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414           84 ESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        84 ~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      ..|..++          .++||-|+.-+.     .+++..+|+.+.+.|+|||.++++.+....
T Consensus       128 l~d~rd~----------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         128 LQDYRDF----------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             ecccccc----------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence            8887654          356999986654     567999999999999999999998876433

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.65  E-value=1.1e-14  Score=108.47  Aligned_cols=106  Identities=21%  Similarity=0.331  Sum_probs=88.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .+..++||||||+|.++..+|...+ +..++++|+++.+++.+++++...++. |++++++|+.+.......    .+.+
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~----~~~~   88 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFP----DGSL   88 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCC----CCce
Confidence            3567899999999999999999886 889999999999999999999988886 899999999886554321    3589


Q ss_pred             eEEEEeCCcc-----------ccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |.|+++.+.+           ....+++.+.+.|+|||.+++.
T Consensus        89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~  131 (194)
T TIGR00091        89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK  131 (194)
T ss_pred             eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence            9999875311           1257899999999999999884

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.64  E-value=6.2e-15  Score=122.74  Aligned_cols=123  Identities=24%  Similarity=0.235  Sum_probs=97.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .+......+...++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.+++++++.++. +++++.+|+.
T Consensus       233 ~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~  311 (445)
T PRK14904        233 SVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDAR  311 (445)
T ss_pred             EEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccc
Confidence            333344455555555566789999999999999999987765689999999999999999999999986 7999999986


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCcc-------------------------ccHHHHHHHHhcccCCeEEEEecccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKD-------------------------NYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      +..+        .++||.|++|++..                         ....+++.+.+.|+|||.+++..+..
T Consensus       312 ~~~~--------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        312 SFSP--------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             cccc--------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            6431        36799999986410                         12357889999999999999987653

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.64  E-value=1.8e-14  Score=114.40  Aligned_cols=119  Identities=15%  Similarity=0.268  Sum_probs=93.4

Q ss_pred             CCCHHHHHHHHHHHHH--c-C-CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            9 GTAPDAGQLMAMLLRL--V-N-AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~--~-~-~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      ...+++..++...+..  . . +.+|||+|||+|..++.++...+ +.+++++|+++.+++.|++++..+++.+++++++
T Consensus       112 ipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~  190 (307)
T PRK11805        112 VPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIE  190 (307)
T ss_pred             CCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            3455566665554431  1 2 36899999999999999999876 7899999999999999999999998877899999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCc----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|..+.++        .++||+|+++++.                            ..+..+++.+.+.|+|||.+++.
T Consensus       191 ~D~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E  262 (307)
T PRK11805        191 SDLFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE  262 (307)
T ss_pred             CchhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            99865432        2579999998541                            11246678888999999999985

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.64  E-value=3.2e-15  Score=116.30  Aligned_cols=112  Identities=13%  Similarity=0.172  Sum_probs=88.5

Q ss_pred             HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH--cCCCCcEEEEecchHHHHHHHhhcCC
Q 029414           22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGVDHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      ....++.+|||+|||+|..+..+++..++.++|+++|+++++++.|+++...  .....+++++++|+.+. + +     
T Consensus        69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-~-----  141 (261)
T PLN02233         69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-F-----  141 (261)
T ss_pred             hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-C-----
Confidence            3445678999999999999999998765568999999999999999887642  22234799999998654 1 1     


Q ss_pred             CCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          100 NEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       100 ~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      .+++||+|++...   ..+...+++++.+.|||||.+++.+...
T Consensus       142 ~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        142 DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence            1468999998653   4567889999999999999999876543

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.63  E-value=3.4e-15  Score=111.95  Aligned_cols=119  Identities=21%  Similarity=0.299  Sum_probs=92.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      +++....+...+..  +..+|||+|||+|..+..++...+ ..+++++|+++++++.+++++...+++ +++++++|+.+
T Consensus        26 ~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~  101 (202)
T PRK00121         26 LSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVE  101 (202)
T ss_pred             hcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHH
Confidence            33444455555554  567999999999999999998876 789999999999999999999888774 89999999844


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCcc-----------ccHHHHHHHHhcccCCeEEEEe
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .++...    ..+.||+|++....+           ....+++.+.+.|+|||.+++.
T Consensus       102 ~l~~~~----~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~  155 (202)
T PRK00121        102 VLLDMF----PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA  155 (202)
T ss_pred             HHHHHc----CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence            444321    136799999864211           2467899999999999999985

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.63  E-value=9e-15  Score=121.21  Aligned_cols=126  Identities=18%  Similarity=0.223  Sum_probs=96.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .......+++...+...++.+|||+|||+|..+..++..++ .++++++|+++++++.+++++++.++..++.+..+|..
T Consensus       221 ~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~  299 (426)
T TIGR00563       221 TVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGR  299 (426)
T ss_pred             EEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence            33445566666667666788999999999999999999886 78999999999999999999999987634444666654


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCcc---------c----------------cHHHHHHHHhcccCCeEEEEecccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKD---------N----------------YCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      .... +.    ..++||.|++|++..         +                ...+++.++++|||||.+++..+..
T Consensus       300 ~~~~-~~----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       300 GPSQ-WA----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             cccc-cc----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            3211 10    136799999996411         1                2567889999999999999987654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=3.4e-15  Score=112.71  Aligned_cols=114  Identities=17%  Similarity=0.269  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      -..++.+.+...++.+|+|.|+|+|..+.+||..+.+.++|+++|+.++.++.|++|++.+++.+++++..+|..+....
T Consensus        82 D~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~  161 (256)
T COG2519          82 DAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE  161 (256)
T ss_pred             CHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence            34455566667789999999999999999999988878999999999999999999999999987799999998775432


Q ss_pred             HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                              ..||.||+|-  +++..+++.+...|+|||.+++..
T Consensus       162 --------~~vDav~LDm--p~PW~~le~~~~~Lkpgg~~~~y~  195 (256)
T COG2519         162 --------EDVDAVFLDL--PDPWNVLEHVSDALKPGGVVVVYS  195 (256)
T ss_pred             --------cccCEEEEcC--CChHHHHHHHHHHhCCCcEEEEEc
Confidence                    4899999985  567789999999999999999964

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.62  E-value=5.3e-15  Score=111.77  Aligned_cols=115  Identities=21%  Similarity=0.255  Sum_probs=94.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      ..+++...+.+..++...++.+|||+|||+|+.+..++...   ++++++|+++++++.+++++...++. ++++..+|.
T Consensus        60 ~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~  135 (212)
T PRK00312         60 TISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDG  135 (212)
T ss_pred             eeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCc
Confidence            35677777787777777788999999999999999888764   48999999999999999999998876 699999997


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+..+.       .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       136 ~~~~~~-------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        136 WKGWPA-------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP  174 (212)
T ss_pred             ccCCCc-------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence            553222       3689999998754433   45678999999999985

>PRK00811 spermidine synthase; Provisional

Probab=99.62  E-value=3.5e-14  Score=111.62  Aligned_cols=105  Identities=21%  Similarity=0.279  Sum_probs=86.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--C--CCcEEEEecchHHHHHHHhhcCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V--DHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      .++++||++|||.|..+.++++..+ ..+|+++|++++.++.+++++...+  .  +++++++.+|+.+.+...      
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------  147 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------  147 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC------
Confidence            4688999999999999999987633 5799999999999999999987532  1  468999999999877652      


Q ss_pred             CCceeEEEEeCCcc-------ccHHHHHHHHhcccCCeEEEEe
Q 029414          101 EGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       101 ~~~fD~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .++||+|++|...+       ...++++.+.+.|+|||++++.
T Consensus       148 ~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        148 ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            47899999996421       1367789999999999999985

>PLN02366 spermidine synthase

Probab=99.62  E-value=4.3e-14  Score=111.89  Aligned_cols=108  Identities=19%  Similarity=0.298  Sum_probs=88.4

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--C-CCcEEEEecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ..++++||+||+|.|..+.++++. +...+++.+|++++.++.+++.+...+  + +++++++.+|+.+.+....     
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-----  162 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-----  162 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----
Confidence            357899999999999999999876 435799999999999999999987532  2 3689999999988876531     


Q ss_pred             CCceeEEEEeCCcc-------ccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .++||+|++|...+       ....+++.+.+.|+|||+++.+.
T Consensus       163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            35799999997532       24578999999999999998853

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.62  E-value=2.3e-14  Score=118.79  Aligned_cols=123  Identities=22%  Similarity=0.269  Sum_probs=96.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .+......+...++...++.+|||+|||+|..+..++...+ +++|+++|.++.+++.++++++..++.  ++++.+|+.
T Consensus       227 ~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~  303 (427)
T PRK10901        227 SVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDAR  303 (427)
T ss_pred             EEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcc
Confidence            34445555666666666788999999999999999999875 589999999999999999999998864  688899986


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCccc-------------------------cHHHHHHHHhcccCCeEEEEeccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +.....     ..++||.|++|++...                         ...+++.+.+.|+|||.+++..+.
T Consensus       304 ~~~~~~-----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs  374 (427)
T PRK10901        304 DPAQWW-----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS  374 (427)
T ss_pred             cchhhc-----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            542211     1357999999975211                         135788899999999999987654

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.62  E-value=8.9e-15  Score=100.12  Aligned_cols=102  Identities=24%  Similarity=0.446  Sum_probs=85.4

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      +.+|||+|||+|..++.+++..  ..+++++|+++..++.++.++...++.++++++++|..+..+.+     ..++||+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~   73 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDL   73 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEE
Confidence            3589999999999999999885  47999999999999999999999998778999999998876433     2578999


Q ss_pred             EEEeCCcc-----------ccHHHHHHHHhcccCCeEEEE
Q 029414          107 AFVDADKD-----------NYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       107 i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      |+.+.+..           .+..+++.+.++|+|||.+++
T Consensus        74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence            99997621           246789999999999999987

...

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.61  E-value=4e-15  Score=111.52  Aligned_cols=104  Identities=18%  Similarity=0.231  Sum_probs=88.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ..+.+|||+|||.|..+..+|+.   +..|+++|.+++.++.|+.+..+.++.  +.+.+..+++....       .++|
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-------~~~F  125 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-------GGQF  125 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc-------CCCc
Confidence            36789999999999999999996   679999999999999999999888863  67777777665443       4799


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      |+|.|--.   .++...++..|.+++||||.++++.+.+
T Consensus       126 DvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         126 DVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             cEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence            99998754   5678889999999999999999987643

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.61  E-value=6.1e-15  Score=112.84  Aligned_cols=115  Identities=17%  Similarity=0.213  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH-HHHH
Q 029414           15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQ   93 (194)
Q Consensus        15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~   93 (194)
                      ..++-..+...++.+|||.|+|+|..|.+|++.+.+.|+|+++|..++.++.|+++++.+++++++++.++|..+ .+..
T Consensus        29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~  108 (247)
T PF08704_consen   29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE  108 (247)
T ss_dssp             HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred             HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence            345555566778999999999999999999999988999999999999999999999999999899999999864 2211


Q ss_pred             HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcc-cCCeEEEEe
Q 029414           94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVYD  136 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L-~~gG~lv~~  136 (194)
                      -     ....+|.||+|-+  ++..++..+.+.| ++||.|++-
T Consensus       109 ~-----~~~~~DavfLDlp--~Pw~~i~~~~~~L~~~gG~i~~f  145 (247)
T PF08704_consen  109 E-----LESDFDAVFLDLP--DPWEAIPHAKRALKKPGGRICCF  145 (247)
T ss_dssp             T------TTSEEEEEEESS--SGGGGHHHHHHHE-EEEEEEEEE
T ss_pred             c-----ccCcccEEEEeCC--CHHHHHHHHHHHHhcCCceEEEE
Confidence            0     1368999999964  4446788899999 899999984

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.61  E-value=4.2e-15  Score=115.93  Aligned_cols=118  Identities=20%  Similarity=0.305  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHH---HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           12 PDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        12 ~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      ......+..++.   ..++.+|||||||.|..+.++|+..  +.+|+++.+|++..+.+++.+.+.++++++++...|..
T Consensus        45 ~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~  122 (273)
T PF02353_consen   45 EAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYR  122 (273)
T ss_dssp             HHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GG
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecc
Confidence            334444555444   5578899999999999999999985  67999999999999999999999999999999999986


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      +.          .++||.|+.-..     ..++..+++.+.+.|+|||.++++.+...
T Consensus       123 ~~----------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~  170 (273)
T PF02353_consen  123 DL----------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHR  170 (273)
T ss_dssp             G-------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred             cc----------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence            54          358999986643     35778999999999999999999876543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.61  E-value=9.4e-15  Score=111.07  Aligned_cols=115  Identities=21%  Similarity=0.303  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414           15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      +-+|..++.....++|||+|||+|..++.+|...+ ..+++++|+++++.+.|+++++.++++++++++++|..++.+..
T Consensus        33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~  111 (248)
T COG4123          33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL  111 (248)
T ss_pred             HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence            45677777777789999999999999999999876 59999999999999999999999999999999999998876664


Q ss_pred             hhcCCCCCceeEEEEeCCc---------------------cccHHHHHHHHhcccCCeEEEE
Q 029414           95 LKYSENEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~---------------------~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      .     ..+||+|+++++.                     ....++++.+.++|||||.+.+
T Consensus       112 ~-----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~  168 (248)
T COG4123         112 V-----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF  168 (248)
T ss_pred             c-----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence            2     3579999999751                     1235678888899999999998

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=99.60  E-value=1.2e-15  Score=102.92  Aligned_cols=102  Identities=31%  Similarity=0.562  Sum_probs=52.3

Q ss_pred             EEEcccccHHHHHHHhhCCCCC--EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414           31 IEIGVFTGYSLLLTALTIPEDG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  108 (194)
Q Consensus        31 LeiG~G~G~~~~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~  108 (194)
                      ||+|++.|.++.++++.+++..  +++++|..+. .+..++.+++.++.++++++.+++.+.++.+.     .++||+++
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~   74 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIF   74 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEE
Confidence            7999999999999999887554  7999999986 44555556556777789999999999888773     26899999


Q ss_pred             EeCC--ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          109 VDAD--KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       109 id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +|+.  .+.....++.+++.|+|||+|+++|+
T Consensus        75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~  106 (106)
T PF13578_consen   75 IDGDHSYEAVLRDLENALPRLAPGGVIVFDDY  106 (106)
T ss_dssp             EES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence            9997  36677889999999999999999984

>PRK01581 speE spermidine synthase; Validated

Probab=99.60  E-value=9.2e-14  Score=110.99  Aligned_cols=106  Identities=15%  Similarity=0.217  Sum_probs=85.4

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHH--H---HcCC-CCcEEEEecchHHHHHHHhhc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII--K---KAGV-DHKINFIESEALSVLDQLLKY   97 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~--~---~~~~-~~~v~~~~~d~~~~~~~~~~~   97 (194)
                      ..++++||++|+|.|..+..+++.. +..+|+++|+++++++.|++..  .   +..+ +++++++.+|+.+++...   
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~---  223 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP---  223 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc---
Confidence            4578999999999999888888753 3689999999999999999732  1   1222 469999999999987663   


Q ss_pred             CCCCCceeEEEEeCCcc--------ccHHHHHHHHhcccCCeEEEEe
Q 029414           98 SENEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                         .++||+|++|...+        ...++++.+.+.|+|||++++.
T Consensus       224 ---~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        224 ---SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             ---CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence               46899999996422        1256899999999999999886

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.60  E-value=9.7e-14  Score=113.51  Aligned_cols=109  Identities=20%  Similarity=0.321  Sum_probs=88.6

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++++|||+|||+|.+++..+..  ...+|+++|+++.+++.++++++.++++ .+++++.+|+.+.+..+...   .+
T Consensus       218 ~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~~  292 (396)
T PRK15128        218 YVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---GE  292 (396)
T ss_pred             hcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---CC
Confidence            346789999999999998876653  2459999999999999999999999986 58999999999987665321   35


Q ss_pred             ceeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEec
Q 029414          103 SFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       103 ~fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +||+|++|++.            ..+..+++.+.++|+|||++++..
T Consensus       293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            89999999772            134556667889999999999854

>PLN02244 tocopherol O-methyltransferase

Probab=99.59  E-value=1.1e-14  Score=117.42  Aligned_cols=105  Identities=16%  Similarity=0.255  Sum_probs=88.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...  +.+|+++|+++.+++.++++....++.++++++.+|+.+..  +     ..++|
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~--~-----~~~~F  187 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP--F-----EDGQF  187 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC--C-----CCCCc
Confidence            356799999999999999999865  57999999999999999999988888778999999986631  1     14789


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      |+|++...   ..+...+++++.+.|||||.+++.+.
T Consensus       188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            99998643   34667899999999999999998653

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.59  E-value=3e-14  Score=108.42  Aligned_cols=103  Identities=19%  Similarity=0.283  Sum_probs=87.4

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  107 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i  107 (194)
                      ++|||+|||+|..+..+++.++ +.+++++|++++.++.+++++...++.++++++.+|..+. + +      .++||+|
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~~fD~I   71 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PDTYDLV   71 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCCEe
Confidence            4799999999999999999875 6899999999999999999999988888899999887543 1 1      3579999


Q ss_pred             EEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          108 FVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       108 ~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ++...   ..+...+++.+.+.|+|||.+++.+..
T Consensus        72 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       72 FGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             ehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            86532   346778999999999999999998764

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.59  E-value=4.5e-15  Score=108.41  Aligned_cols=140  Identities=17%  Similarity=0.237  Sum_probs=91.7

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      -.++||+|||.|.+|..||..+.   +++++|+++.+++.|++++...   ++|++.+.+..+..+        .++||+
T Consensus        44 y~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P--------~~~FDL  109 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP--------EGRFDL  109 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT-----------SS-EEE
T ss_pred             cceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC--------CCCeeE
Confidence            36899999999999999999854   9999999999999999998643   389999999877644        379999


Q ss_pred             EEEeCC------ccccHHHHHHHHhcccCCeEEEEecc-----cccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCC
Q 029414          107 AFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNT-----LWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPR  175 (194)
Q Consensus       107 i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  175 (194)
                      |++...      ..+...+++.+...|+|||.+|+-..     ...|+...            .....+-|.+.+.+-..
T Consensus       110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~g------------a~tv~~~~~~~~~~~~~  177 (201)
T PF05401_consen  110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAG------------AETVLEMLQEHLTEVER  177 (201)
T ss_dssp             EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--------------HHHHHHHHHHHSEEEEE
T ss_pred             EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccc------------hHHHHHHHHHHhhheeE
Confidence            999854      12345677888899999999999432     22333222            22234555666654444


Q ss_pred             eEEEeeecCCeeEEEEE
Q 029414          176 VQLSHVALGDGITICRR  192 (194)
Q Consensus       176 ~~~~~~p~~~G~~i~~~  192 (194)
                      ++..--..+..-.+++-
T Consensus       178 ~~~~~~~~~~~~~~~~~  194 (201)
T PF05401_consen  178 VECRGGSPNEDCLLARF  194 (201)
T ss_dssp             EEEE-SSTTSEEEEEEE
T ss_pred             EEEcCCCCCCceEeeee
Confidence            44444344444455543

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.58  E-value=1.6e-14  Score=113.05  Aligned_cols=112  Identities=18%  Similarity=0.307  Sum_probs=91.1

Q ss_pred             HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           23 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ...++.+|||+|||+|..+..++....+.++|+++|+++.+++.++++....+.+ ++++..+|..+. + +     ..+
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~-~-----~~~  145 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-P-V-----ADN  145 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-C-C-----CCC
Confidence            3456789999999999998888887655679999999999999999999888875 899999987553 1 1     136


Q ss_pred             ceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          103 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       103 ~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      +||+|+....   ..+....++.+.+.|||||.+++.+....+
T Consensus       146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~  188 (272)
T PRK11873        146 SVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG  188 (272)
T ss_pred             ceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence            8999998754   345678899999999999999998765433

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.58  E-value=1.8e-14  Score=114.73  Aligned_cols=104  Identities=19%  Similarity=0.168  Sum_probs=85.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||||||+|..+..+++.   +.+|+++|.++++++.|+++....+...+++++++++.+....       .++||
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~-------~~~FD  200 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE-------GRKFD  200 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc-------cCCCC
Confidence            4568999999999999999873   6799999999999999998876655545899999998665221       47899


Q ss_pred             EEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +|++...   ..+...+++.+.+.|||||.+++....
T Consensus       201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        201 AVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             EEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            9998654   456788999999999999999997643

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.58  E-value=1.5e-14  Score=108.08  Aligned_cols=100  Identities=18%  Similarity=0.230  Sum_probs=81.6

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+.++|+.   +.+|+++|+++++++.++++....++. ++++...|..+.  .+      .++
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~--~~------~~~   95 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNL--TF------DGE   95 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhC--Cc------CCC
Confidence            446789999999999999999985   569999999999999999999888875 688888887543  11      357


Q ss_pred             eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEE
Q 029414          104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ||+|++...     ......+++.+.++|+|||.+++
T Consensus        96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            999997654     23456889999999999999554

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.57  E-value=1.8e-13  Score=101.94  Aligned_cols=122  Identities=14%  Similarity=0.099  Sum_probs=91.1

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      +++++...+.++..+....+..+|||+|||+|..++.++...  ..+|+++|.+++.++.++++++.++.. +++++.+|
T Consensus        34 Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D  110 (199)
T PRK10909         34 RPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTN  110 (199)
T ss_pred             CcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEch
Confidence            444455555566666555567899999999999998754432  369999999999999999999999875 79999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCC-ccc-cHHHHHHHHh--cccCCeEEEEec
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDAD-KDN-YCNYHERLMK--LLKVGGIAVYDN  137 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~-~~~-~~~~~~~~~~--~L~~gG~lv~~~  137 (194)
                      +.+.++..      .++||+|++|++ ... ....++.+.+  .|+|+++++++-
T Consensus       111 ~~~~l~~~------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~  159 (199)
T PRK10909        111 ALSFLAQP------GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES  159 (199)
T ss_pred             HHHHHhhc------CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence            98766432      357999999988 333 3344454443  378999999863

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.57  E-value=1.1e-13  Score=112.05  Aligned_cols=111  Identities=21%  Similarity=0.342  Sum_probs=95.6

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++++||++.|+||.+++..|...  ..+|+++|.|...++.|++|++-++++ .++.++++|+.+++.....+   ..
T Consensus       215 ~~~GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~---g~  289 (393)
T COG1092         215 LAAGKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR---GE  289 (393)
T ss_pred             hccCCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc---CC
Confidence            3458999999999999999999862  249999999999999999999999986 66899999999999887543   45


Q ss_pred             ceeEEEEeCC------------ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          103 SFDYAFVDAD------------KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       103 ~fD~i~id~~------------~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +||+|++|++            ..++...+..+.++|+|||++++....
T Consensus       290 ~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         290 KFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             cccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            8999999986            245677888899999999999997655

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.57  E-value=5.7e-14  Score=110.60  Aligned_cols=119  Identities=19%  Similarity=0.314  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHH---cCC-CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414           10 TAPDAGQLMAMLLRL---VNA-KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~---~~~-~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      ..++++.++......   .++ .+|||+|||+|..++.++...+ +.+++++|+++++++.+++++...++.++++++.+
T Consensus        94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~  172 (284)
T TIGR00536        94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS  172 (284)
T ss_pred             CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            344555555554422   223 6899999999999999999876 78999999999999999999999888767999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCc----------------------------cccHHHHHHHHhcccCCeEEEEec
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |..+.++        ..+||+|+++++.                            ..+..+++.+.+.|+|||++++.-
T Consensus       173 d~~~~~~--------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~  244 (284)
T TIGR00536       173 NLFEPLA--------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI  244 (284)
T ss_pred             chhccCc--------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            9865321        2379999987531                            024456788889999999999863

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.56  E-value=6.4e-14  Score=111.47  Aligned_cols=117  Identities=21%  Similarity=0.371  Sum_probs=91.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      ++.+.....+...+...++.+|||+|||+|+.+..+++..+..++|+++|.++++++.|++++...+.+ ++.++.+|+.
T Consensus        63 ~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~  141 (322)
T PRK13943         63 SSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGY  141 (322)
T ss_pred             CCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChh
Confidence            345555555544555567789999999999999999998764578999999999999999999998875 7999999986


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +..+.       .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       142 ~~~~~-------~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        142 YGVPE-------FAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP  179 (322)
T ss_pred             hcccc-------cCCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence            65433       3579999998654333   34567899999998884

>TIGR00417 speE spermidine synthase

Probab=99.56  E-value=3.5e-13  Score=105.41  Aligned_cols=106  Identities=22%  Similarity=0.262  Sum_probs=86.6

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--C-CCcEEEEecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ..++++||++|||+|..+..+++..+ ..+++++|++++.++.+++++...+  . .+++++..+|+.+.+...      
T Consensus        70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------  142 (270)
T TIGR00417        70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------  142 (270)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------
Confidence            34678999999999999998887643 5789999999999999999886542  1 257899999998877654      


Q ss_pred             CCceeEEEEeCCcc-----c--cHHHHHHHHhcccCCeEEEEe
Q 029414          101 EGSFDYAFVDADKD-----N--YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       101 ~~~fD~i~id~~~~-----~--~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .++||+|++|...+     .  ..++++.+.+.|+|||++++.
T Consensus       143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            47899999997511     1  467889999999999999996

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.56  E-value=5.6e-14  Score=108.54  Aligned_cols=106  Identities=15%  Similarity=0.177  Sum_probs=86.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .++.+|||+|||+|..+..+++.+ .++.+++++|+++++++.+++++...+...+++++.+|+.+..         .+.
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~  125 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN  125 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence            356799999999999999998853 2478999999999999999999998887778999999986531         245


Q ss_pred             eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +|+|++...     ......+++.+.+.|+|||.+++.+..
T Consensus       126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            898886532     223467899999999999999997643

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=99.56  E-value=3.3e-13  Score=99.59  Aligned_cols=157  Identities=20%  Similarity=0.278  Sum_probs=120.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccH--HHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGY--SLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~--~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      .+|..++++..++...+.+.++|+.++.|.  .++.||.+. ..+++++||.++++.+...++.+...++.+.++|+.++
T Consensus        25 ~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~  104 (218)
T PF07279_consen   25 KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE  104 (218)
T ss_pred             CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence            467899999999999999999999877553  344443332 24799999999999999999999988887678999998


Q ss_pred             h-HHHHHHHhhcCCCCCceeEEEEeCCccccH-HHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHH
Q 029414           87 A-LSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  164 (194)
Q Consensus        87 ~-~~~~~~~~~~~~~~~~fD~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  164 (194)
                      . .+.++.+       ...|++++|+...++. .+|+.+ ++-+.|.++|..|....+.      .            --
T Consensus       105 ~~e~~~~~~-------~~iDF~vVDc~~~d~~~~vl~~~-~~~~~GaVVV~~Na~~r~~------~------------~~  158 (218)
T PF07279_consen  105 APEEVMPGL-------KGIDFVVVDCKREDFAARVLRAA-KLSPRGAVVVCYNAFSRST------N------------GF  158 (218)
T ss_pred             CHHHHHhhc-------cCCCEEEEeCCchhHHHHHHHHh-ccCCCceEEEEeccccCCc------C------------Cc
Confidence            5 4567665       6899999999888877 777654 5445667777777653220      0            12


Q ss_pred             HHHHHhhcCCCeEEEeeecCCeeEEEEE
Q 029414          165 DLNRSLADDPRVQLSHVALGDGITICRR  192 (194)
Q Consensus       165 ~~~~~l~~~~~~~~~~~p~~~G~~i~~~  192 (194)
                      .|...++..+.+.+.+||+|.|+.|.+.
T Consensus       159 ~w~~~~~~~r~Vrsv~LPIG~GleVt~i  186 (218)
T PF07279_consen  159 SWRSVLRGRRVVRSVFLPIGKGLEVTRI  186 (218)
T ss_pred             cHHHhcCCCCceeEEEeccCCCeEEEEE
Confidence            4555667778899999999999999863

The function of this family is unknown.

>TIGR00740 methyltransferase, putative

Probab=99.55  E-value=1.5e-13  Score=105.67  Aligned_cols=106  Identities=12%  Similarity=0.132  Sum_probs=86.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      +..+|||+|||+|..+..++..++ ++.+++++|+++++++.|++++...+...+++++++|..+..         .+.+
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~  123 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKNA  123 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCCC
Confidence            567899999999999999998752 478999999999999999999987766568999999986541         2458


Q ss_pred             eEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          105 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       105 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      |+|++...     ..+...+++.+.+.|+|||.+++.+...
T Consensus       124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence            98877643     2245678999999999999999987543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.55  E-value=4.7e-14  Score=105.26  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=80.1

Q ss_pred             HHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           21 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        21 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      .+...++.+|||+|||+|.++.++|..   +.+|+++|+++.+++.++++....+++  ++....|....  .+      
T Consensus        25 ~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~--~~------   91 (195)
T TIGR00477        25 AVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA--AL------   91 (195)
T ss_pred             HhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc--cc------
Confidence            334456789999999999999999984   579999999999999999988877763  66666665432  11      


Q ss_pred             CCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414          101 EGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       101 ~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .++||+|++...     ......+++.+.+.|+|||++++-
T Consensus        92 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        92 NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            257999987643     234568899999999999985553

Part of a tellurite-reducing operon tehA and tehB

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.55  E-value=1.6e-14  Score=106.23  Aligned_cols=98  Identities=22%  Similarity=0.267  Sum_probs=86.3

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|.|+|||.|.+|..+++..| ...++++|.|+++++.|+++.      +++++..+|..++-+.        .+
T Consensus        28 ~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~--------~~   92 (257)
T COG4106          28 LERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPE--------QP   92 (257)
T ss_pred             ccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCC--------Cc
Confidence            44678999999999999999999998 999999999999999997764      3899999998776443        68


Q ss_pred             eeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .|++|.++.   .++....|..++..|.|||+|.++
T Consensus        93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ  128 (257)
T COG4106          93 TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ  128 (257)
T ss_pred             cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence            999998875   677888999999999999999996

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=2.9e-13  Score=105.52  Aligned_cols=114  Identities=18%  Similarity=0.266  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      .-++|..+..  ++++|||+|||+|..++..++..  ..+++++|++|.+++.+++|++.++++..++....+..+..  
T Consensus       152 cL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~--  225 (300)
T COG2264         152 CLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP--  225 (300)
T ss_pred             HHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc--
Confidence            3444444443  78999999999999999998863  46899999999999999999999998753333333333321  


Q ss_pred             HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                            ..++||+|+++--..-...+...+.++++|||.++++.++
T Consensus       226 ------~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl  265 (300)
T COG2264         226 ------ENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL  265 (300)
T ss_pred             ------ccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence                  1368999999876556667788899999999999998755

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.54  E-value=2.9e-14  Score=95.22  Aligned_cols=93  Identities=20%  Similarity=0.372  Sum_probs=74.0

Q ss_pred             EEEEcccccHHHHHHHhhCCC--CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414           30 TIEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  107 (194)
Q Consensus        30 vLeiG~G~G~~~~~la~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i  107 (194)
                      |||+|||+|..+..++..++.  ..+++++|+++++++.+++++...+.  +++++++|+.+.. ..      .++||+|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~-~~------~~~~D~v   71 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLP-FS------DGKFDLV   71 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHH-HH------SSSEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCc-cc------CCCeeEE
Confidence            799999999999999988732  37999999999999999999988664  7899999997753 32      5799999


Q ss_pred             EEeCC------ccccHHHHHHHHhcccCCe
Q 029414          108 FVDAD------KDNYCNYHERLMKLLKVGG  131 (194)
Q Consensus       108 ~id~~------~~~~~~~~~~~~~~L~~gG  131 (194)
                      ++...      ......+++.+.++|+|||
T Consensus        72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   72 VCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            99432      3456788999999999998

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.54  E-value=8.4e-14  Score=112.83  Aligned_cols=113  Identities=14%  Similarity=0.103  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC--CcEEEEecchHHHH
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVL   91 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~   91 (194)
                      ..-++..+. .....+|||+|||+|..++.++...| ..+|+++|.++.+++.++++++.++..  .+++++.+|..+..
T Consensus       217 trllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~  294 (378)
T PRK15001        217 ARFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV  294 (378)
T ss_pred             HHHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC
Confidence            344444433 22346899999999999999999876 889999999999999999999887643  37888988875432


Q ss_pred             HHHhhcCCCCCceeEEEEeCCcc--------ccHHHHHHHHhcccCCeEEEEe
Q 029414           92 DQLLKYSENEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +        .++||+|+++++..        ....+++.+.+.|+|||.+++.
T Consensus       295 ~--------~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        295 E--------PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             C--------CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            1        35799999986621        2356788899999999999885

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.53  E-value=4.2e-14  Score=109.74  Aligned_cols=95  Identities=15%  Similarity=0.123  Sum_probs=79.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++.        +++++.+|+.+.. .       .++|
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~-------~~~f   90 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-P-------KPDT   90 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-C-------CCCc
Confidence            4578999999999999999999875 78999999999999988752        5788889986542 1       3689


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+|++...   ..+...+++.+.+.|+|||.+++.
T Consensus        91 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         91 DVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             eEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            99999764   456678899999999999999985

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.53  E-value=6.4e-14  Score=108.86  Aligned_cols=98  Identities=23%  Similarity=0.324  Sum_probs=82.1

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+..++..++ +.+++++|+++.+++.+++++      ++++++.+|..+..+        .++
T Consensus        29 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~~   93 (258)
T PRK01683         29 LENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQA   93 (258)
T ss_pred             CcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CCC
Confidence            34578999999999999999998876 789999999999999998764      268888888865421        368


Q ss_pred             eeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ||+|++...   ..+...+++.+.+.|+|||.+++.
T Consensus        94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            999998865   346778999999999999999985

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.53  E-value=1.3e-14  Score=95.22  Aligned_cols=92  Identities=24%  Similarity=0.316  Sum_probs=74.2

Q ss_pred             EEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEe
Q 029414           31 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD  110 (194)
Q Consensus        31 LeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id  110 (194)
                      ||+|||+|..+..++..  +..+++++|+++++++.++++....    ++.+..+|..+. +-      .+++||+|++.
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~~------~~~sfD~v~~~   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-PF------PDNSFDVVFSN   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-SS-------TT-EEEEEEE
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-cc------ccccccccccc
Confidence            89999999999999998  3789999999999999999887533    456888888665 21      15899999987


Q ss_pred             CC---ccccHHHHHHHHhcccCCeEEEE
Q 029414          111 AD---KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       111 ~~---~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ..   .++...+++++.+.|||||.+++
T Consensus        68 ~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   68 SVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            64   35778899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.53  E-value=1.4e-12  Score=100.87  Aligned_cols=108  Identities=17%  Similarity=0.234  Sum_probs=82.9

Q ss_pred             HHHHHHHHH-HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           15 GQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        15 ~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      ..++..+.. ..++++|||+|||+|..++.++...  ..+++++|+++.+++.+++++..+++..++.+..++       
T Consensus       107 ~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g--~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-------  177 (250)
T PRK00517        107 RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG--AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-------  177 (250)
T ss_pred             HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-------
Confidence            334444443 2467899999999999998877643  347999999999999999999988875445443321       


Q ss_pred             HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                              .+||+|+++........+++.+.+.|+|||.+++....
T Consensus       178 --------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        178 --------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             --------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence                    26999998876556677889999999999999997543

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.53  E-value=2.9e-13  Score=99.74  Aligned_cols=126  Identities=21%  Similarity=0.253  Sum_probs=96.9

Q ss_pred             cCCCCHHHHHHHHHHHHH-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            7 MMGTAPDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +++++...+++...+... ..+.++||+.||+|..++..+...  ..+++.+|.++..+...++|++..+..++++++.+
T Consensus        22 RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~   99 (183)
T PF03602_consen   22 RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG   99 (183)
T ss_dssp             -SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES
T ss_pred             CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc
Confidence            567777777777777777 788999999999999999877653  36999999999999999999999998878999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCcc--c-cHHHHHHHH--hcccCCeEEEEec
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKD--N-YCNYHERLM--KLLKVGGIAVYDN  137 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~-~~~~~~~~~--~~L~~gG~lv~~~  137 (194)
                      |+...+......   ..+||+||+|++..  . +...++.+.  .+|+++|+|++.-
T Consensus       100 d~~~~l~~~~~~---~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~  153 (183)
T PF03602_consen  100 DAFKFLLKLAKK---GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH  153 (183)
T ss_dssp             SHHHHHHHHHHC---TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CHHHHHHhhccc---CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence            998888776332   57899999999833  2 256777776  7899999999964

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.52  E-value=5.7e-13  Score=105.13  Aligned_cols=103  Identities=16%  Similarity=0.185  Sum_probs=84.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++++|||+|||+|..+..+++. + ..+++++|+++.+++.+++++..+++..++.+..++...   ..      .++||
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~---~~------~~~fD  227 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ---PI------EGKAD  227 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---cc------CCCce
Confidence            5689999999999999888764 2 469999999999999999999998887677777765221   11      36899


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +|+++........++..+.+.|+|||.+++....
T Consensus       228 lVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       228 VIVANILAEVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             EEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            9999876666677889999999999999997653

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PLN02823 spermine synthase

Probab=99.52  E-value=7.2e-13  Score=106.02  Aligned_cols=106  Identities=18%  Similarity=0.190  Sum_probs=86.8

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC---CCCcEEEEecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---VDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ..++++||.+|+|.|..+.++++..+ ..+++.+|++++.++.+++.+....   -+++++++.+|+..++...      
T Consensus       101 ~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------  173 (336)
T PLN02823        101 HPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------  173 (336)
T ss_pred             CCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------
Confidence            34688999999999999999887643 5789999999999999999986432   1469999999999988653      


Q ss_pred             CCceeEEEEeCCcc---------ccHHHHH-HHHhcccCCeEEEEe
Q 029414          101 EGSFDYAFVDADKD---------NYCNYHE-RLMKLLKVGGIAVYD  136 (194)
Q Consensus       101 ~~~fD~i~id~~~~---------~~~~~~~-~~~~~L~~gG~lv~~  136 (194)
                      .++||+|++|...+         ...++++ .+.+.|+|||+++++
T Consensus       174 ~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        174 DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            46899999995321         1457787 899999999999885

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.51  E-value=3.5e-13  Score=104.08  Aligned_cols=118  Identities=24%  Similarity=0.385  Sum_probs=92.5

Q ss_pred             CCCHHHHHHHHHHHHHc--CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            9 GTAPDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~--~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      ...+....++..+....  ++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...+++ +++++.+|
T Consensus        68 ~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d  145 (251)
T TIGR03534        68 IPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSD  145 (251)
T ss_pred             cCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECc
Confidence            34455555555555433  346899999999999999999876 789999999999999999999988876 79999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCcc-----------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADKD-----------------------------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~~-----------------------------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +.+..+        .++||+|+++.+..                             .+..+++.+.+.|+|||.+++.
T Consensus       146 ~~~~~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~  216 (251)
T TIGR03534       146 WFEPLP--------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE  216 (251)
T ss_pred             hhccCc--------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            866321        36899999875411                             0235678889999999999985

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK08317 hypothetical protein; Provisional

Probab=99.51  E-value=5.2e-13  Score=102.09  Aligned_cols=115  Identities=19%  Similarity=0.318  Sum_probs=89.9

Q ss_pred             HHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcC
Q 029414           19 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   98 (194)
Q Consensus        19 ~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~   98 (194)
                      ...+...++.+|||+|||+|..+..++..+++.++++++|+++..++.++++..  ....++++..+|..+..  +    
T Consensus        12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~--~----   83 (241)
T PRK08317         12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP--F----   83 (241)
T ss_pred             HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC--C----
Confidence            344445667899999999999999999987447899999999999999998833  22357899988875431  1    


Q ss_pred             CCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414           99 ENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        99 ~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                       ..++||+|++...   ..+...+++.+.+.|+|||.+++.+..+..
T Consensus        84 -~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  129 (241)
T PRK08317         84 -PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDT  129 (241)
T ss_pred             -CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCc
Confidence             1368999998754   356788999999999999999997755433

>PRK04266 fibrillarin; Provisional

Probab=99.51  E-value=1.5e-13  Score=104.48  Aligned_cols=113  Identities=15%  Similarity=0.178  Sum_probs=85.7

Q ss_pred             HHHHHHHH--HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414           14 AGQLMAML--LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   91 (194)
Q Consensus        14 ~~~~l~~l--~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   91 (194)
                      ...++..+  +...++.+|||+|||+|..+..++..++ .++|+++|+++++++.+.++....   .|+.++.+|+....
T Consensus        58 ~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~  133 (226)
T PRK04266         58 AAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPE  133 (226)
T ss_pred             HHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcc
Confidence            34444434  4455778999999999999999999886 789999999999999887776543   37899999976421


Q ss_pred             --HHHhhcCCCCCceeEEEEeCCcc-ccHHHHHHHHhcccCCeEEEEe
Q 029414           92 --DQLLKYSENEGSFDYAFVDADKD-NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        92 --~~~~~~~~~~~~fD~i~id~~~~-~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                        ..+      .++||+|+++...+ ....+++.+.+.|||||.+++.
T Consensus       134 ~~~~l------~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        134 RYAHV------VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             hhhhc------cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence              111      25699999886532 2234578999999999999995

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.51  E-value=3.8e-13  Score=117.54  Aligned_cols=109  Identities=19%  Similarity=0.313  Sum_probs=90.9

Q ss_pred             HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecchHHHHHHHhhcCCC
Q 029414           22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ....++++|||+|||+|.+++.++...  ..+|+++|+++.+++.++++++.+++. ++++++++|+.+++..+      
T Consensus       534 ~~~~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~------  605 (702)
T PRK11783        534 GQMAKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA------  605 (702)
T ss_pred             HHhcCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc------
Confidence            334468899999999999999999852  347999999999999999999999986 68999999999877654      


Q ss_pred             CCceeEEEEeCCc--------------cccHHHHHHHHhcccCCeEEEEecc
Q 029414          101 EGSFDYAFVDADK--------------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       101 ~~~fD~i~id~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .++||+|++|++.              ..+...+..+.++|+|||++++...
T Consensus       606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            3689999999762              1245677888899999999998643

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.51  E-value=1.5e-12  Score=96.62  Aligned_cols=126  Identities=10%  Similarity=-0.035  Sum_probs=94.8

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      +.+.+...+.+...+.....+.++||++||+|..++.++....  .+++++|.++..++.++++++..+..++++++.+|
T Consensus        30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D  107 (189)
T TIGR00095        30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNS  107 (189)
T ss_pred             CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehh
Confidence            3344444455555555555788999999999999999998643  48999999999999999999999887789999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHH--hcccCCeEEEEec
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYDN  137 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~--~~L~~gG~lv~~~  137 (194)
                      +.+.+..+...   ...||+||.|++.  ..+...++.+.  ..|+++|++++..
T Consensus       108 ~~~~l~~~~~~---~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~  159 (189)
T TIGR00095       108 ALRALKFLAKK---PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEE  159 (189)
T ss_pred             HHHHHHHhhcc---CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            98876554211   2358999999873  23444555554  4789999999863

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.51  E-value=4.3e-13  Score=108.45  Aligned_cols=105  Identities=24%  Similarity=0.288  Sum_probs=88.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .....+||||||+|..+..+|...| +..++|+|+++.+++.+.+++...++. |+.++.+|+...+..+     ..+++
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~-----~~~s~  193 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL-----PSNSV  193 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC-----CCCce
Confidence            3456899999999999999999986 889999999999999999999998886 7999999998765443     24789


Q ss_pred             eEEEEeCCcc---------ccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKD---------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~---------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |.|++..+.+         ....+++.+.+.|+|||.+.+.
T Consensus       194 D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~  234 (390)
T PRK14121        194 EKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR  234 (390)
T ss_pred             eEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            9999875311         1257899999999999999883

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.51  E-value=1e-12  Score=96.76  Aligned_cols=108  Identities=19%  Similarity=0.185  Sum_probs=85.7

Q ss_pred             HHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHh
Q 029414           16 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   95 (194)
Q Consensus        16 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~   95 (194)
                      .+|.......++++|||+|||+|..+..++...   .+++++|+++++++.+++++...+.  +++++.+|..+..    
T Consensus         9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~----   79 (179)
T TIGR00537         9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV----   79 (179)
T ss_pred             HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence            455555556677899999999999999999864   3899999999999999999987765  5888888875531    


Q ss_pred             hcCCCCCceeEEEEeCCcc------------------------ccHHHHHHHHhcccCCeEEEEec
Q 029414           96 KYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                           .++||+|+++.+..                        ....+++.+.++|+|||.+++..
T Consensus        80 -----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        80 -----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ  140 (179)
T ss_pred             -----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence                 25899999885410                        03457888999999999998854

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.49  E-value=4.4e-13  Score=113.06  Aligned_cols=101  Identities=19%  Similarity=0.315  Sum_probs=83.0

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      +.+|||+|||+|..++.++...+ +.+++++|+|+.+++.|++++..+++.++++++.+|..+.++        .++||+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDl  209 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDF  209 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccE
Confidence            46899999999999999998876 789999999999999999999998887789999999765321        257999


Q ss_pred             EEEeCCc-----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029414          107 AFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       107 i~id~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+++++.                             ..+..+++.+.+.|+|||.+++.
T Consensus       210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            9987540                             01234566777899999999985

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.49  E-value=3.3e-13  Score=107.44  Aligned_cols=112  Identities=13%  Similarity=0.089  Sum_probs=90.7

Q ss_pred             HHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414           20 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        20 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      ......+..+|||+|||+|..+..+++.+| +.+++++|. ++.++.++++++..++.++++++.+|+.+.  .+     
T Consensus       143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~~-----  213 (306)
T TIGR02716       143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--SY-----  213 (306)
T ss_pred             HHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--CC-----
Confidence            333445668999999999999999999987 889999998 789999999999999888999999998652  11     


Q ss_pred             CCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          100 NEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       100 ~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                        +.+|+|++...     .......++.+.+.|+|||.+++.+..+..
T Consensus       214 --~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~  259 (306)
T TIGR02716       214 --PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD  259 (306)
T ss_pred             --CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence              34799887653     223356899999999999999998876543

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.49  E-value=1.5e-12  Score=104.06  Aligned_cols=122  Identities=12%  Similarity=0.086  Sum_probs=93.7

Q ss_pred             cccCCCCHHHHHHHHHHHH----HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcE
Q 029414            5 RAMMGTAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI   80 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v   80 (194)
                      ..++++++...+.|...+.    ..++.+|||+|||+|..++.+|..   +.+|+++|.++.+++.|+++++.++++ ++
T Consensus       148 ~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~-~v  223 (315)
T PRK03522        148 QSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLT-NV  223 (315)
T ss_pred             CeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ce
Confidence            3467777776666654322    235689999999999999999984   569999999999999999999999984 89


Q ss_pred             EEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           81 NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        81 ~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +++.+|+.+.....      .++||+|++|++.......+...+..++|++++++.
T Consensus       224 ~~~~~D~~~~~~~~------~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvs  273 (315)
T PRK03522        224 QFQALDSTQFATAQ------GEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSS  273 (315)
T ss_pred             EEEEcCHHHHHHhc------CCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEE
Confidence            99999998765432      357999999988554433443444557888877774

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.48  E-value=5.5e-13  Score=102.08  Aligned_cols=107  Identities=17%  Similarity=0.279  Sum_probs=88.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+...++.+..+|+.+...       ..+.|
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~  122 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-------PDNSF  122 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-------CCCCc
Confidence            35679999999999999999998754689999999999999999998876666678999988865321       13689


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      |+|++...   ..+....++.+.+.|+|||.+++.+.
T Consensus       123 D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        123 DAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             cEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence            99987643   45677889999999999999988654

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.48  E-value=3.7e-13  Score=106.20  Aligned_cols=99  Identities=19%  Similarity=0.264  Sum_probs=81.0

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+.+++..   +.+|+++|.++.+++.++++....++  ++++...|..+.  .+      .++
T Consensus       118 ~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~--~~------~~~  184 (287)
T PRK12335        118 TVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSA--SI------QEE  184 (287)
T ss_pred             ccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcc--cc------cCC
Confidence            346679999999999999999984   57999999999999999999988876  688887776542  11      368


Q ss_pred             eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEE
Q 029414          104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ||+|++...     ......+++.+.+.|+|||++++
T Consensus       185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            999987653     23567889999999999999665

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.48  E-value=5e-13  Score=106.86  Aligned_cols=108  Identities=16%  Similarity=0.177  Sum_probs=82.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++++|||+|||+|+.+..++...+  .+|+++|+++.++..++..-...+...++.+..++..+. +.       .++|
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~~F  190 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LKAF  190 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cCCc
Confidence            4578999999999999999998743  479999999988865544333333335799999888654 21       3689


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      |+|++.+.   ..+...+++.+.+.|+|||.+++++....+
T Consensus       191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~  231 (322)
T PRK15068        191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDG  231 (322)
T ss_pred             CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence            99998754   356788999999999999999998655443

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.48  E-value=1.4e-14  Score=96.31  Aligned_cols=96  Identities=24%  Similarity=0.334  Sum_probs=63.8

Q ss_pred             EEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEe
Q 029414           31 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD  110 (194)
Q Consensus        31 LeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id  110 (194)
                      ||+|||+|..+..++..++ ..+++++|+|+.+++.+++++...... +......+..+.....     ..++||+|++.
T Consensus         1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~fD~V~~~   73 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYD-----PPESFDLVVAS   73 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE
T ss_pred             CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcc-----cccccceehhh
Confidence            7999999999999999985 899999999999999999999887754 3344443333332221     12489999987


Q ss_pred             CC---ccccHHHHHHHHhcccCCeEE
Q 029414          111 AD---KDNYCNYHERLMKLLKVGGIA  133 (194)
Q Consensus       111 ~~---~~~~~~~~~~~~~~L~~gG~l  133 (194)
                      ..   .++...+++.+.++|+|||+|
T Consensus        74 ~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   74 NVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            54   456788999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.48  E-value=1.8e-12  Score=101.90  Aligned_cols=112  Identities=21%  Similarity=0.302  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           15 GQLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        15 ~~~l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      .-+|..+.+.. ++++|||+|||+|..++..++..  ..+|+++|++|.+++.|++|+..+++.+++.+..  ..+.   
T Consensus       149 ~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~---  221 (295)
T PF06325_consen  149 RLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDL---  221 (295)
T ss_dssp             HHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCT---
T ss_pred             HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--eccc---
Confidence            33444454443 56899999999999999988863  4689999999999999999999999987776531  1111   


Q ss_pred             HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                            ..++||+|+.+-...........+.++|+|||.++++..+
T Consensus       222 ------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl  261 (295)
T PF06325_consen  222 ------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGIL  261 (295)
T ss_dssp             ------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred             ------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEcccc
Confidence                  1378999999887666677778888999999999998766

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.47  E-value=3.2e-13  Score=105.22  Aligned_cols=106  Identities=20%  Similarity=0.250  Sum_probs=83.9

Q ss_pred             HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           23 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ...++.+|||+|||+|..+..++...  +.+|+++|+++.+++.+++++..   .+++.+..+|+.+. + +     ..+
T Consensus        49 ~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~-~-----~~~  116 (263)
T PTZ00098         49 ELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-D-F-----PEN  116 (263)
T ss_pred             CCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-C-C-----CCC
Confidence            34567899999999999999998753  57999999999999999988653   34799999887642 1 1     136


Q ss_pred             ceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          103 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       103 ~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      +||+|++...     ..+...+++.+.+.|||||.+++.+...
T Consensus       117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            8999998422     2366789999999999999999987643

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.46  E-value=1.4e-12  Score=101.85  Aligned_cols=118  Identities=22%  Similarity=0.360  Sum_probs=90.4

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecchHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS   89 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~   89 (194)
                      .++...++...   .++++||++.|++|.+++..+...  ..+|+++|.|..+++.+++|+..++++ .+++++.+|+.+
T Consensus       111 qR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~  185 (286)
T PF10672_consen  111 QRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK  185 (286)
T ss_dssp             GHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH
T ss_pred             HHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH
Confidence            34555555553   468999999999999999877642  358999999999999999999999986 689999999999


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCC---------ccccHHHHHHHHhcccCCeEEEEec
Q 029414           90 VLDQLLKYSENEGSFDYAFVDAD---------KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~---------~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+..+..    .++||+|++|++         ..++...+..+.++|+|||.|++..
T Consensus       186 ~l~~~~~----~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s  238 (286)
T PF10672_consen  186 FLKRLKK----GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS  238 (286)
T ss_dssp             HHHHHHH----TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHhc----CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            8876533    368999999987         2356778888999999999998754

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.46  E-value=6e-13  Score=98.08  Aligned_cols=114  Identities=17%  Similarity=0.234  Sum_probs=83.5

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      ++....++.. +...++.++||+|||.|..+++||+.   +-.|+++|.++..++.+++..+..+++  ++....|..+.
T Consensus        16 ~~~hs~v~~a-~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~   89 (192)
T PF03848_consen   16 TPTHSEVLEA-VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDF   89 (192)
T ss_dssp             ----HHHHHH-CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCB
T ss_pred             CCCcHHHHHH-HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhc
Confidence            3444444443 44557899999999999999999996   779999999999999999988888875  88888886553


Q ss_pred             HHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecc
Q 029414           91 LDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .  +      .+.||+|+....     .+.....++.+...++|||+.++...
T Consensus        90 ~--~------~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   90 D--F------PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             S---------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             c--c------cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            1  2      367999987533     45566788999999999999888543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.46  E-value=1.7e-12  Score=100.37  Aligned_cols=117  Identities=15%  Similarity=0.093  Sum_probs=87.5

Q ss_pred             CCHHHHHHHHHHHHHc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414           10 TAPDAGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      ..+.+..++.......    .+.+|||+|||+|..++.++...+ +.+++++|+++.+++.+++++..++    ++++++
T Consensus        66 pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~  140 (251)
T TIGR03704        66 PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEG  140 (251)
T ss_pred             CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEe
Confidence            4455555555544322    235899999999999999998776 6799999999999999999998765    378888


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCcc-----------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKD-----------------------------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~-----------------------------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |..+.++...     .++||+|++|++.-                             .+..+++.+.++|+|||.+++.
T Consensus       141 D~~~~l~~~~-----~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~  215 (251)
T TIGR03704       141 DLYDALPTAL-----RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE  215 (251)
T ss_pred             echhhcchhc-----CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            8876543311     25799999997511                             0236677778999999999985

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14967 putative methyltransferase; Provisional

Probab=99.46  E-value=1.8e-12  Score=98.70  Aligned_cols=100  Identities=16%  Similarity=0.176  Sum_probs=79.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .+..+|||+|||+|..+..++.. + ..+++++|+++.+++.+++++...+.  +++++.+|..+.++        .++|
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~f  102 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRPF  102 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCCe
Confidence            34579999999999999999875 2 35999999999999999999988775  58888888765422        3689


Q ss_pred             eEEEEeCCcc------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+|+++.+..                        ....+++.+.+.|+|||.+++.
T Consensus       103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967        103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            9999985411                        0245678889999999999973

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.46  E-value=1.4e-12  Score=106.24  Aligned_cols=121  Identities=17%  Similarity=0.247  Sum_probs=92.6

Q ss_pred             cCCCCHHHHHHHHHHHHH-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            7 MMGTAPDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      .+...+++..++..+... .+..+|||+|||+|..++.++...+ +.+++++|+|+++++.++++++..+.  +++++++
T Consensus       231 vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~g  307 (423)
T PRK14966        231 VLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHG  307 (423)
T ss_pred             ccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEc
Confidence            344667777777776653 3457999999999999999998765 78999999999999999999988764  7999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCc----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |..+....      ..++||+|+++++.                            ..+..+++.+.+.|+|||.+++.
T Consensus       308 Dl~e~~l~------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE  380 (423)
T PRK14966        308 SWFDTDMP------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE  380 (423)
T ss_pred             chhccccc------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            98653111      13579999998751                            01235566667899999999884

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.46  E-value=3.4e-12  Score=104.13  Aligned_cols=122  Identities=14%  Similarity=0.124  Sum_probs=96.8

Q ss_pred             ccccCCCCHHHHHHHHHHHHH----cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc
Q 029414            4 LRAMMGTAPDAGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK   79 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~   79 (194)
                      ...++++++...+.|...+..    ..+.+|||+|||+|..++.+|..   ..+++++|+++.+++.|+++++.++++ +
T Consensus       207 ~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~  282 (374)
T TIGR02085       207 PQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-N  282 (374)
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-c
Confidence            446788888888887654432    35689999999999999999964   568999999999999999999999886 8


Q ss_pred             EEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccc-cHHHHHHHHhcccCCeEEEEe
Q 029414           80 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        80 v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++++.+|+.+.....      .++||+|++|++... ...+++.+ ..++|+++++++
T Consensus       283 ~~~~~~d~~~~~~~~------~~~~D~vi~DPPr~G~~~~~l~~l-~~~~p~~ivyvs  333 (374)
T TIGR02085       283 LSFAALDSAKFATAQ------MSAPELVLVNPPRRGIGKELCDYL-SQMAPKFILYSS  333 (374)
T ss_pred             EEEEECCHHHHHHhc------CCCCCEEEECCCCCCCcHHHHHHH-HhcCCCeEEEEE
Confidence            999999998776442      246999999988543 34555555 457898888885

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK14968 putative methyltransferase; Provisional

Probab=99.45  E-value=1.9e-12  Score=95.71  Aligned_cols=110  Identities=16%  Similarity=0.215  Sum_probs=85.5

Q ss_pred             HHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc-EEEEecchHHHHHHH
Q 029414           16 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLDQL   94 (194)
Q Consensus        16 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~   94 (194)
                      .++.......++++|||+|||+|..+..++..   +.+++++|.++++++.+++++...++.++ +.++.+|..+.+.  
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--   87 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--   87 (188)
T ss_pred             HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence            44444444567789999999999999999986   57999999999999999999988877533 8888888755322  


Q ss_pred             hhcCCCCCceeEEEEeCCcc------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029414           95 LKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                            ..+||+|+.+.+..                        ....+++.+.+.|+|||.+++.
T Consensus        88 ------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~  147 (188)
T PRK14968         88 ------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL  147 (188)
T ss_pred             ------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                  24799999875411                        1345789999999999998874

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.44  E-value=3.2e-12  Score=106.57  Aligned_cols=123  Identities=14%  Similarity=0.145  Sum_probs=93.9

Q ss_pred             ccCCCCHHHHHHHHHHH-H---HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEE
Q 029414            6 AMMGTAPDAGQLMAMLL-R---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN   81 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~-~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~   81 (194)
                      .++++++...+.|...+ .   ..++.+|||+|||+|..++.+|...   .+++++|+++++++.|++++..+++. +++
T Consensus       273 ~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~-~v~  348 (443)
T PRK13168        273 DFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLD-NVT  348 (443)
T ss_pred             CeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-ceE
Confidence            45677777655544333 2   2345799999999999999999863   59999999999999999999988875 799


Q ss_pred             EEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           82 FIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        82 ~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++.+|+.+.+.....   ..++||+|++|++.......++.+.+ ++|+++++++
T Consensus       349 ~~~~d~~~~l~~~~~---~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        349 FYHANLEEDFTDQPW---ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             EEEeChHHhhhhhhh---hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence            999999876543211   13579999999886655666765544 6888988885

>TIGR00452 methyltransferase, putative

Probab=99.44  E-value=1.4e-12  Score=103.58  Aligned_cols=108  Identities=14%  Similarity=0.107  Sum_probs=80.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++++|||+|||+|+.+..++...+  .+|+++|+++.++..++..-...+...++.+...+..+. +.       ..+|
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-------~~~F  189 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-------LYAF  189 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-------CCCc
Confidence            4568999999999999999887632  479999999998876543222223234778888776553 21       2579


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      |+|++.+.   ..+...+++++.+.|+|||.+++......+
T Consensus       190 D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g  230 (314)
T TIGR00452       190 DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG  230 (314)
T ss_pred             CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence            99998764   456678999999999999999998665544

Known examples to date are restricted to the proteobacteria.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.44  E-value=1.3e-12  Score=102.39  Aligned_cols=117  Identities=24%  Similarity=0.408  Sum_probs=88.8

Q ss_pred             CCHHHHHHHHHHH---HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414           10 TAPDAGQLMAMLL---RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus        10 ~~~~~~~~l~~l~---~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      ..+++..++..+.   ...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++. .....+++++.+|
T Consensus        89 pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d  166 (275)
T PRK09328         89 PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGD  166 (275)
T ss_pred             CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEcc
Confidence            3444455555444   234567999999999999999999886 7899999999999999999988 3334589999998


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCc-----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+...        .++||+|+++.+.                             ..+..+++.+.++|+|||.+++.
T Consensus       167 ~~~~~~--------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e  237 (275)
T PRK09328        167 WFEPLP--------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE  237 (275)
T ss_pred             ccCcCC--------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            744221        2689999987541                             11345677788999999999994

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.44  E-value=1.4e-12  Score=104.99  Aligned_cols=109  Identities=19%  Similarity=0.220  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414           15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      ..++..+. .....+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++.+++.  .+++.+|..+.   .
T Consensus       186 ~lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~---~  258 (342)
T PRK09489        186 QLLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD---I  258 (342)
T ss_pred             HHHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc---c
Confidence            33444333 33456899999999999999999876 789999999999999999999988864  46677776432   1


Q ss_pred             hhcCCCCCceeEEEEeCCc--------cccHHHHHHHHhcccCCeEEEEe
Q 029414           95 LKYSENEGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~--------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                            .++||+|+++.+.        .....+++.+.+.|+|||.+++.
T Consensus       259 ------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV  302 (342)
T PRK09489        259 ------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (342)
T ss_pred             ------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence                  3689999998652        23467889999999999999773

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.44  E-value=7.5e-12  Score=93.21  Aligned_cols=126  Identities=21%  Similarity=0.309  Sum_probs=99.0

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  107 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i  107 (194)
                      ..+||||||.|.+.+.+|...| +..++|+|+....+..+.+.+...++. |+.++.+|+...+..+..    .+++|.|
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~----~~~v~~i   92 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFP----PGSVDRI   92 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHST----TTSEEEE
T ss_pred             CeEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhccc----CCchheE
Confidence            3899999999999999999997 999999999999999999999999886 999999999998887753    3789999


Q ss_pred             EEeCC----c-------cccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhc-CCC
Q 029414          108 FVDAD----K-------DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD-DPR  175 (194)
Q Consensus       108 ~id~~----~-------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~  175 (194)
                      ++..+    +       -....+++.+.+.|+|||.|.+..            +        .....+.+.+.+.. ++.
T Consensus        93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T------------D--------~~~y~~~~~~~~~~~~~~  152 (195)
T PF02390_consen   93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT------------D--------VEEYAEWMLEQFEESHPG  152 (195)
T ss_dssp             EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE------------S---------HHHHHHHHHHHHHHSTT
T ss_pred             EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe------------C--------CHHHHHHHHHHHHhcCcC
Confidence            87754    1       134788999999999999998841            1        22335566666666 577


Q ss_pred             eEEE
Q 029414          176 VQLS  179 (194)
Q Consensus       176 ~~~~  179 (194)
                      |...
T Consensus       153 f~~~  156 (195)
T PF02390_consen  153 FENI  156 (195)
T ss_dssp             EEEE
T ss_pred             eEEc
Confidence            7755

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.44  E-value=1.7e-12  Score=97.43  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=77.4

Q ss_pred             HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           23 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ...++.+|||+|||+|..+..++...+ +.+++++|+++++++.|++++     + ++++.++|+.+  +.      ..+
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~-----~-~~~~~~~d~~~--~~------~~~  104 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL-----P-NINIIQGSLFD--PF------KDN  104 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC-----C-CCcEEEeeccC--CC------CCC
Confidence            345677999999999999999998765 789999999999999998864     2 56777888765  11      147


Q ss_pred             ceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          103 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       103 ~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      +||+|++...     ......+++.+.+.+  ++++++.+...+.
T Consensus       105 sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~  147 (204)
T TIGR03587       105 FFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS  147 (204)
T ss_pred             CEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence            8999998764     223466777787776  4677776654433

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=1.1e-11  Score=97.16  Aligned_cols=119  Identities=20%  Similarity=0.375  Sum_probs=90.4

Q ss_pred             CCCCHHHHHHHHHHH-HHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            8 MGTAPDAGQLMAMLL-RLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~-~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      ....+++..++..+. ... .+.+|||+|||+|..++.++...+ ..+|+++|+|+++++.|++|...+++ .++.++.+
T Consensus        90 liPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~  167 (280)
T COG2890          90 LIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQS  167 (280)
T ss_pred             eecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEee
Confidence            345566666666643 122 222799999999999999999987 78999999999999999999999998 46777766


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCC---cc-------------------------ccHHHHHHHHhcccCCeEEEEec
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDAD---KD-------------------------NYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~---~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |..+   .+      .++||+|+++++   ..                         .+..+++.+.+.|+|||.+++.-
T Consensus       168 dlf~---~~------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~  238 (280)
T COG2890         168 DLFE---PL------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI  238 (280)
T ss_pred             eccc---cc------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence            5544   32      358999998865   11                         12455677788999999999963

>PRK06922 hypothetical protein; Provisional

Probab=99.43  E-value=2.2e-12  Score=109.66  Aligned_cols=112  Identities=16%  Similarity=0.254  Sum_probs=87.7

Q ss_pred             HHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414           20 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        20 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      .+....++.+|||+|||+|..+..++...+ +.+++++|+++.+++.++++....+  .++.++.+|..+. +...    
T Consensus       412 ~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dL-p~~f----  483 (677)
T PRK06922        412 IILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINL-SSSF----  483 (677)
T ss_pred             HHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhC-cccc----
Confidence            344555788999999999999999998876 8999999999999999998876554  3688899998763 2211    


Q ss_pred             CCCceeEEEEeCC----------------ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          100 NEGSFDYAFVDAD----------------KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       100 ~~~~fD~i~id~~----------------~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ..++||+|++...                ......+++.+.+.|||||.+++.+..
T Consensus       484 edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v  539 (677)
T PRK06922        484 EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI  539 (677)
T ss_pred             CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            1468999987532                124467889999999999999997653

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.43  E-value=1.1e-11  Score=96.79  Aligned_cols=107  Identities=22%  Similarity=0.299  Sum_probs=92.0

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--C-CCcEEEEecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ..++++||-||.|.|..+.++++..+ ..+++.+|+++..++.+++.+....  . +++++++.+|+.+++...      
T Consensus        74 h~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------  146 (282)
T COG0421          74 HPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------  146 (282)
T ss_pred             CCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------
Confidence            33568999999999999999999875 7899999999999999999997654  2 379999999999998875      


Q ss_pred             CCceeEEEEeCCcc-------ccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .++||+|++|...+       ....+++.|.+.|+++|+++++.
T Consensus       147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            35899999997522       35789999999999999999973

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.43  E-value=1.2e-12  Score=110.21  Aligned_cols=106  Identities=18%  Similarity=0.246  Sum_probs=85.4

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+..++...  +.+++++|+++++++.|+++..  +...++++..+|..+..  +     ..++
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~-----~~~~  332 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--Y-----PDNS  332 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--C-----CCCC
Confidence            4456799999999999999999864  5699999999999999998765  33457999999976531  1     1368


Q ss_pred             eeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          104 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       104 fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ||+|++...   ..+...+++.+.+.|+|||.+++.+...
T Consensus       333 fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        333 FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            999998644   4567789999999999999999986543

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.43  E-value=1.5e-12  Score=99.60  Aligned_cols=100  Identities=20%  Similarity=0.323  Sum_probs=81.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++.     +++.++.+|..+...       ..++||
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~-------~~~~fD  100 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL-------EDSSFD  100 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC-------CCCcee
Confidence            457999999999999999999876 7889999999999998887653     378888888865321       146899


Q ss_pred             EEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +|++...   ..+....++.+.+.|+|||.+++...
T Consensus       101 ~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072       101 LIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             EEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence            9998754   34677889999999999999998643

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.43  E-value=7.2e-12  Score=104.31  Aligned_cols=120  Identities=18%  Similarity=0.227  Sum_probs=96.1

Q ss_pred             HHHHHHHHH--HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414           14 AGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   91 (194)
Q Consensus        14 ~~~~l~~l~--~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   91 (194)
                      .+.+...++  ...++.+|||++++.|.-|..+|..+...+.+++.|+++..+...++++++.|+. ++.+...|+....
T Consensus        99 sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~  177 (470)
T PRK11933         99 SSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFG  177 (470)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhh
Confidence            333334444  4457789999999999999999999876789999999999999999999999986 7899988987653


Q ss_pred             HHHhhcCCCCCceeEEEEeCCcc-------c------------------cHHHHHHHHhcccCCeEEEEecccc
Q 029414           92 DQLLKYSENEGSFDYAFVDADKD-------N------------------YCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~~~-------~------------------~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ..+      .+.||.|++|++.+       +                  ....++.++++|||||+||.+.+..
T Consensus       178 ~~~------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        178 AAL------PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             hhc------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence            332      35799999997521       1                  1567888899999999999987653

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.43  E-value=7.6e-12  Score=104.04  Aligned_cols=124  Identities=15%  Similarity=0.111  Sum_probs=94.6

Q ss_pred             cccCCCCHHHHHHHHHHHH----HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcE
Q 029414            5 RAMMGTAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI   80 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v   80 (194)
                      ..+++.++...+.|...+.    ..+..+|||+|||+|..++.+|...   .+|+++|+++++++.|++++..+++. ++
T Consensus       267 ~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~-nv  342 (431)
T TIGR00479       267 RDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIA-NV  342 (431)
T ss_pred             CceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCC-ce
Confidence            3466677766654444332    2345799999999999999999863   48999999999999999999998875 89


Q ss_pred             EEEecchHHHHHHHhhcCCCCCceeEEEEeCCccc-cHHHHHHHHhcccCCeEEEEe
Q 029414           81 NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        81 ~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +++.+|+.+.++.+...   ..+||+|++|++... ...+++.+. .++|+++++++
T Consensus       343 ~~~~~d~~~~l~~~~~~---~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs  395 (431)
T TIGR00479       343 EFLAGTLETVLPKQPWA---GQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS  395 (431)
T ss_pred             EEEeCCHHHHHHHHHhc---CCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence            99999998876553211   357999999988544 566666654 58898887774

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.43  E-value=1.8e-12  Score=104.19  Aligned_cols=115  Identities=18%  Similarity=0.206  Sum_probs=91.8

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      .+..+..+..++...++.+|||+|||+|..++..+..   +.+++++|+++.++..++++++..++++ +.+..+|+.+.
T Consensus       167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l  242 (329)
T TIGR01177       167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKL  242 (329)
T ss_pred             CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcC
Confidence            4455666666666667789999999999998887663   5799999999999999999999999874 88999998763


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEe
Q 029414           91 LDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                       +..      .++||+|++|++.            ..+..+++.+.+.|+|||.+++-
T Consensus       243 -~~~------~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       243 -PLS------SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             -Ccc------cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence             211      3689999998651            11467889999999999999884

This family is found exclusively in the Archaea.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.42  E-value=9.5e-13  Score=101.92  Aligned_cols=96  Identities=16%  Similarity=0.261  Sum_probs=76.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..++..   +.+++++|+++.+++.++++..      ...++.+|..+. + +     ..++||
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~-~-----~~~~fD  105 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P-L-----ATATFD  105 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c-C-----CCCcEE
Confidence            4679999999999999988864   5799999999999999987642      245677887553 1 1     146899


Q ss_pred             EEEEeCC---ccccHHHHHHHHhcccCCeEEEEec
Q 029414          106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +|++...   ..+...++.++.+.|+|||.+++..
T Consensus       106 ~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        106 LAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             EEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence            9998754   4567788999999999999999864

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.8e-12  Score=100.76  Aligned_cols=113  Identities=21%  Similarity=0.236  Sum_probs=89.4

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      .....-+|..+.....+ +|||+|||.|..++.+|+..| ..+++.+|.+..+++.+|+++..++++ +..++.+|..+.
T Consensus       144 D~GS~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~  220 (300)
T COG2813         144 DKGSRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEP  220 (300)
T ss_pred             ChHHHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEeccccc
Confidence            34444455555544444 899999999999999999987 899999999999999999999999876 446777776553


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCc----ccc----HHHHHHHHhcccCCeEEEE
Q 029414           91 LDQLLKYSENEGSFDYAFVDADK----DNY----CNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~~----~~~----~~~~~~~~~~L~~gG~lv~  135 (194)
                      .         .++||+|+++++.    ...    .++++.+.+.|++||-|.+
T Consensus       221 v---------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i  264 (300)
T COG2813         221 V---------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI  264 (300)
T ss_pred             c---------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence            2         3589999999872    222    3788999999999999887

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.42  E-value=2.9e-12  Score=97.07  Aligned_cols=106  Identities=21%  Similarity=0.302  Sum_probs=85.5

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+..+++..+...+++++|+++..++.+++++.   ...++++..+|..+...       ..++
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~-------~~~~  106 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF-------EDNS  106 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC-------CCCc
Confidence            3467899999999999999999988633799999999999999998875   33478999988866421       1368


Q ss_pred             eeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          104 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       104 fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ||+|++...   ..+...+++.+.+.|+|||.+++.+..
T Consensus       107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            999987643   456778899999999999999986543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.40  E-value=2.5e-12  Score=102.90  Aligned_cols=100  Identities=16%  Similarity=0.129  Sum_probs=80.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..+++..+ ..+++++|.++++++.++++...    .+++++.+|..+.. .      ..++||
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp-~------~~~sFD  180 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLP-F------PTDYAD  180 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCC-C------CCCcee
Confidence            457999999999999999988775 67999999999999999987641    36888999986531 1      146899


Q ss_pred             EEEEeCC---ccccHHHHHHHHhcccCCeEEEEec
Q 029414          106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +|++...   ..+....++++.+.|+|||.+++.+
T Consensus       181 vVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             EEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            9998654   3455678999999999999998743

>PRK03612 spermidine synthase; Provisional

Probab=99.40  E-value=3e-12  Score=108.53  Aligned_cols=107  Identities=19%  Similarity=0.312  Sum_probs=85.4

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHH--HHHc---CC-CCcEEEEecchHHHHHHHhhc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI--IKKA---GV-DHKINFIESEALSVLDQLLKY   97 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~---~~-~~~v~~~~~d~~~~~~~~~~~   97 (194)
                      ..++++||++|+|+|..+..+++. +...+++.+|+|++.++.++++  +...   .. +++++++.+|+.+.+...   
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---  370 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---  370 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence            357899999999999999999875 3247999999999999999994  3321   12 258999999998877653   


Q ss_pred             CCCCCceeEEEEeCCcc--------ccHHHHHHHHhcccCCeEEEEec
Q 029414           98 SENEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                         .++||+|++|...+        ...++++.+.+.|+|||+++++.
T Consensus       371 ---~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        371 ---AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             ---CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence               46899999996522        12468899999999999999964

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.40  E-value=4.7e-13  Score=101.32  Aligned_cols=100  Identities=19%  Similarity=0.189  Sum_probs=78.1

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-Cc----EEEEecchHHHHHHHhhcCCCCC
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HK----INFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~----v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ++|||+|||+|-.+..||+.   +..|+++|.++++++.|+++....... .+    +++...+.++.          .+
T Consensus        91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~  157 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TG  157 (282)
T ss_pred             ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------cc
Confidence            67999999999999999997   569999999999999999994333222 22    44444444332          46


Q ss_pred             ceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          103 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       103 ~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      +||.|++.-.   ..+...+++.+.++|+|||.+++.+..+
T Consensus       158 ~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  158 KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             ccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence            7999998754   4567889999999999999999977543

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.38  E-value=4.6e-11  Score=92.11  Aligned_cols=107  Identities=19%  Similarity=0.211  Sum_probs=86.8

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC---CCcEEEEecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ..++++||-||.|.|..+..+++..+ ..+++.+|+++..++.+++.+.....   +++++++.+|+..++.+.      
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------  146 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------  146 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------
Confidence            34689999999999999999987643 67999999999999999999875322   369999999999988774      


Q ss_pred             CC-ceeEEEEeCCc-------cccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EG-SFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~-~fD~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+ +||+|++|...       ....++++.+.+.|+|||+++++.
T Consensus       147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  147 QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            34 89999999752       235789999999999999999974

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.38  E-value=2.1e-11  Score=88.90  Aligned_cols=125  Identities=18%  Similarity=0.194  Sum_probs=98.3

Q ss_pred             cCCCCHHHHHHHHHHHH-HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            7 MMGTAPDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      ++++++-.+.+...+.. ...+.++||+.+|+|..++..+...  ..+++.+|.+...+...++|++..++..+.+++..
T Consensus        23 RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~  100 (187)
T COG0742          23 RPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRN  100 (187)
T ss_pred             CCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence            56677766777777766 4788999999999999999987763  36999999999999999999999998889999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHH----HhcccCCeEEEEec
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERL----MKLLKVGGIAVYDN  137 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~----~~~L~~gG~lv~~~  137 (194)
                      |+...++....    .++||+||+|++..  .........    ...|+|+|.+++..
T Consensus       101 da~~~L~~~~~----~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~  154 (187)
T COG0742         101 DALRALKQLGT----REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH  154 (187)
T ss_pred             cHHHHHHhcCC----CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence            99977777632    23599999999843  221122222    26799999999964

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.38  E-value=3.8e-12  Score=107.07  Aligned_cols=106  Identities=25%  Similarity=0.301  Sum_probs=80.4

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..+.++|||+|||+|..+..++..   ..+++++|+++++++.+++..   +..++++++.+|+......+     ..++
T Consensus        35 ~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~-----~~~~  103 (475)
T PLN02336         35 PYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNI-----SDGS  103 (475)
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCC-----CCCC
Confidence            335679999999999999999986   359999999999998776532   22347899999885421111     1468


Q ss_pred             eeEEEEeCCc-----cccHHHHHHHHhcccCCeEEEEecccc
Q 029414          104 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       104 fD~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ||+|++....     .....+++.+.+.|+|||++++.+..+
T Consensus       104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~  145 (475)
T PLN02336        104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF  145 (475)
T ss_pred             EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            9999987641     224678899999999999999977554

>PTZ00146 fibrillarin; Provisional

Probab=99.38  E-value=6.7e-12  Score=97.89  Aligned_cols=106  Identities=16%  Similarity=0.129  Sum_probs=78.0

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..+..+|||+|||+|.++..+|..+.+.++|+++|+++++.+...+.....   .|+.++.+|+.........    .+.
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~----~~~  202 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRML----VPM  202 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcc----cCC
Confidence            346679999999999999999999876789999999987654444433322   3788899997542111100    257


Q ss_pred             eeEEEEeCCccccH-HHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~  136 (194)
                      ||+||+|...++.. .++.++.+.|||||.+++.
T Consensus       203 vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        203 VDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence            99999998754433 4456788999999999993

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.37  E-value=7.1e-12  Score=90.11  Aligned_cols=106  Identities=25%  Similarity=0.305  Sum_probs=78.2

Q ss_pred             HHHHHHHHHH-HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH
Q 029414           14 AGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   92 (194)
Q Consensus        14 ~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~   92 (194)
                      ...++..+.. ..+..+|||+|||.|..+..++..   +.+++++|+++..++.           .+......+..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~   74 (161)
T PF13489_consen    9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPF   74 (161)
T ss_dssp             HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHC
T ss_pred             HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhc
Confidence            3455565664 567889999999999999999775   4499999999988876           122222222222211


Q ss_pred             HHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414           93 QLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        93 ~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      .       .++||+|++...   .++...+++.+.++|||||++++.....
T Consensus        75 ~-------~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   75 P-------DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             H-------SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             c-------ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            1       479999999865   4577899999999999999999987653

...

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.37  E-value=1.5e-11  Score=94.13  Aligned_cols=112  Identities=19%  Similarity=0.245  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414           15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      .+++.......++.+|||+|||+|..+..+++.   +.+++++|+++..++.+++++...+.  ++++...+..+.....
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~  111 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEH  111 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhc
Confidence            345555544556789999999999999988875   46899999999999999999877664  5778888876654322


Q ss_pred             hhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEec
Q 029414           95 LKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                            .++||+|++...   ..+....++.+.+.|+|||.+++..
T Consensus       112 ------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~  151 (233)
T PRK05134        112 ------PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST  151 (233)
T ss_pred             ------CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence                  478999988643   3456778899999999999999864

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.37  E-value=7.5e-12  Score=102.29  Aligned_cols=100  Identities=17%  Similarity=0.215  Sum_probs=80.4

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||||||+|..+..+++..  +.+|+++|+++++++.++++..  ++  .+++..+|..+.          .++
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----------~~~  228 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----------NGQ  228 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----------CCC
Confidence            3466799999999999999999864  5699999999999999999874  32  477888876442          368


Q ss_pred             eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ||.|+....     ..++..+++.+.+.|+|||.+++....
T Consensus       229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~  269 (383)
T PRK11705        229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG  269 (383)
T ss_pred             CCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            999986543     234578899999999999999997654

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.36  E-value=2.1e-11  Score=92.42  Aligned_cols=104  Identities=24%  Similarity=0.350  Sum_probs=90.1

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      ...+||||||.|.+.+.+|...| +.-++|||+....+..+.+.+.+.+++ |++++.+|+.++++.+.+    .++.|-
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~----~~sl~~  122 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP----DGSLDK  122 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC----CCCeeE
Confidence            35899999999999999999988 889999999999999999999999987 999999999999888743    357888


Q ss_pred             EEEeC---Cc--------cccHHHHHHHHhcccCCeEEEEe
Q 029414          107 AFVDA---DK--------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       107 i~id~---~~--------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |++.-   +.        --...+++.+.+.|+|||.|.+.
T Consensus       123 I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         123 IYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             EEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence            87663   31        12578899999999999999984

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.36  E-value=6e-12  Score=94.98  Aligned_cols=101  Identities=13%  Similarity=0.120  Sum_probs=75.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC--------------CCcEEEEecchHHHH
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSVL   91 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~   91 (194)
                      ++.+|||+|||.|..+++||..   +..|+++|+++.+++.+.+.   .++              ..+++++++|..+..
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~  107 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT  107 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCC
Confidence            5579999999999999999985   67999999999999975332   121              236889999987753


Q ss_pred             HHHhhcCCCCCceeEEEEeC-----CccccHHHHHHHHhcccCCeEEEEecc
Q 029414           92 DQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ...      .+.||.|+-..     .......+++.+.++|+|||++++...
T Consensus       108 ~~~------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       108 AAD------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             ccc------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            221      25688876432     244556789999999999998666433

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.35  E-value=6.1e-12  Score=98.55  Aligned_cols=94  Identities=20%  Similarity=0.263  Sum_probs=72.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCC--CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPED--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      +..+|||+|||+|..+..++..++..  ..++++|+++.+++.|+++.      +++.+..+|+.+. + +     ..++
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p-~-----~~~s  151 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P-F-----ADQS  151 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C-C-----cCCc
Confidence            44689999999999999999876532  37999999999999987753      3688888887653 2 1     1468


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ||+|+.....    ..++++.+.|+|||.+++.
T Consensus       152 fD~I~~~~~~----~~~~e~~rvLkpgG~li~~  180 (272)
T PRK11088        152 LDAIIRIYAP----CKAEELARVVKPGGIVITV  180 (272)
T ss_pred             eeEEEEecCC----CCHHHHHhhccCCCEEEEE
Confidence            9999875432    2357788999999999984

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.1e-10  Score=84.69  Aligned_cols=112  Identities=18%  Similarity=0.266  Sum_probs=87.6

Q ss_pred             ccccccCCCCHHHHHHHHHHHH--HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc
Q 029414            2 LILRAMMGTAPDAGQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK   79 (194)
Q Consensus         2 ~~~~~~~~~~~~~~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~   79 (194)
                      +.|.++++..+..+.+|...-.  ...+++|+|+|||||..++..+...  ..+|+|+|+++++++.+++|..+  +..+
T Consensus        19 ~~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~--l~g~   94 (198)
T COG2263          19 LGLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEE--LLGD   94 (198)
T ss_pred             ccceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHh--hCCc
Confidence            3567788888877777765532  2256789999999999999887763  37999999999999999999998  3458


Q ss_pred             EEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcc
Q 029414           80 INFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLL  127 (194)
Q Consensus        80 v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L  127 (194)
                      +.++.+|..++          .+++|.++++++     +.....+++.+++.-
T Consensus        95 v~f~~~dv~~~----------~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s  137 (198)
T COG2263          95 VEFVVADVSDF----------RGKFDTVIMNPPFGSQRRHADRPFLLKALEIS  137 (198)
T ss_pred             eEEEEcchhhc----------CCccceEEECCCCccccccCCHHHHHHHHHhh
Confidence            99999998765          578999999876     334466777776664

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.35  E-value=3.8e-11  Score=97.55  Aligned_cols=126  Identities=13%  Similarity=0.098  Sum_probs=94.5

Q ss_pred             ccccCCCCHHHHHHHHHHHHH-cC--CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcE
Q 029414            4 LRAMMGTAPDAGQLMAMLLRL-VN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI   80 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~-~~--~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v   80 (194)
                      ...++++++...+.|...+.. .+  +.++||++||+|..++.++...   .+|+++|.++.+++.+++++..+++. ++
T Consensus       181 ~~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v  256 (362)
T PRK05031        181 ENSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NV  256 (362)
T ss_pred             CCCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cE
Confidence            346888888877777766543 22  3579999999999999999864   48999999999999999999999886 89


Q ss_pred             EEEecchHHHHHHHhhcCC---------CCCceeEEEEeCCccc-cHHHHHHHHhcccCCeEEEEe
Q 029414           81 NFIESEALSVLDQLLKYSE---------NEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        81 ~~~~~d~~~~~~~~~~~~~---------~~~~fD~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +++.+|+.+.++.+.....         ...+||+|++|++... ....++.+.+   |+++++++
T Consensus       257 ~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS  319 (362)
T PRK05031        257 QIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS  319 (362)
T ss_pred             EEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence            9999999887765421100         0125899999998543 3444455533   67877775

>TIGR03438 probable methyltransferase

Probab=99.33  E-value=3.4e-11  Score=95.64  Aligned_cols=124  Identities=11%  Similarity=0.082  Sum_probs=85.7

Q ss_pred             CHHHHHHHHHHHH-----HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414           11 APDAGQLMAMLLR-----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus        11 ~~~~~~~l~~l~~-----~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      .+...++|...+.     ..++.+|||+|||+|..+..++..++...+++++|+|+++++.+++++......-++..+++
T Consensus        43 tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~g  122 (301)
T TIGR03438        43 TRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICA  122 (301)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEE
Confidence            3334455554433     23558999999999999999998875457999999999999999998875432235777899


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |..+..+.....  ..+...+++++..     ..+...+++.+.+.|+|||.+++.
T Consensus       123 D~~~~~~~~~~~--~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       123 DFTQPLALPPEP--AAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             cccchhhhhccc--ccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            987643322100  0012344454432     345667899999999999999874

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.33  E-value=1.3e-11  Score=93.49  Aligned_cols=98  Identities=11%  Similarity=0.127  Sum_probs=74.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC--------------CCcEEEEecchHHHH
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSVL   91 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~   91 (194)
                      +..+||++|||.|..+++||..   +.+|+++|+++.+++.+.+   +.++              ..++++.++|..+..
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~  110 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT  110 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence            5579999999999999999985   7799999999999997642   2222              246889999987753


Q ss_pred             HHHhhcCCCCCceeEEEEe-----CCccccHHHHHHHHhcccCCeEEEE
Q 029414           92 DQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +..      .+.||+|+-.     ...+....+++.+.++|+|||++++
T Consensus       111 ~~~------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        111 AAD------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             ccc------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            321      3579998832     2345567889999999999986443

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.33  E-value=3.9e-11  Score=91.23  Aligned_cols=117  Identities=20%  Similarity=0.194  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHH----cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414           12 PDAGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus        12 ~~~~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      +...+++...+..    .++.+|||+|||+|..+..++..   ..+++++|.++..++.+++++...+.. ++++..+|+
T Consensus        27 ~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~  102 (224)
T TIGR01983        27 PLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSV  102 (224)
T ss_pred             HHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCH
Confidence            3334555555543    24789999999999999998875   347999999999999999998877653 688888888


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .+.....      .++||+|++...   ..+...+++.+.+.|+|||.+++...
T Consensus       103 ~~~~~~~------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       103 EDLAEKG------AKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             HHhhcCC------CCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            7654321      368999998643   45667889999999999999998643

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.32  E-value=3.1e-11  Score=91.61  Aligned_cols=99  Identities=18%  Similarity=0.239  Sum_probs=79.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++..   +.+++++|+++++++.+++++...+...++.+..+|..+.          .++|
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~f  120 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGEF  120 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCCc
Confidence            45789999999999999999875   4699999999999999999998777656899999997653          2579


Q ss_pred             eEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+|++...     .......+..+.+.+++++++.+.
T Consensus       121 D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       121 DIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            99986432     233456678888888887777764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.32  E-value=2.3e-11  Score=91.68  Aligned_cols=99  Identities=15%  Similarity=0.198  Sum_probs=73.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEG  102 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~  102 (194)
                      .++.+|||+|||+|.++..+++..++.++|+++|+++.           ... ++++++++|+.+.  ++.+... ...+
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~-~~~~  116 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLER-VGDS  116 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHH-hCCC
Confidence            45679999999999999999998765689999999881           122 3689999998763  2222111 0146


Q ss_pred             ceeEEEEeCCc---c----c-------cHHHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADK---D----N-------YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~---~----~-------~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +||+|+++...   .    +       ...+++.+.+.|+|||.+++.
T Consensus       117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            89999988631   0    1       135788899999999999995

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.31  E-value=9.4e-12  Score=92.04  Aligned_cols=154  Identities=16%  Similarity=0.109  Sum_probs=105.8

Q ss_pred             CCCHHHHHHHHHHHHHcC-CC-eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            9 GTAPDAGQLMAMLLRLVN-AK-KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~-~~-~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      +.++....++..|.+..+ .. +|||||||+|..+.+||..+| ..+....|.++......+..+...++++-...+.-|
T Consensus         6 AaeRNk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lD   84 (204)
T PF06080_consen    6 AAERNKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALD   84 (204)
T ss_pred             hhhhCHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEee
Confidence            345566667777766543 34 499999999999999999998 889999999999988999998888876222234434


Q ss_pred             hHHHHHHHhhc-CCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchH
Q 029414           87 ALSVLDQLLKY-SENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR  160 (194)
Q Consensus        87 ~~~~~~~~~~~-~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~  160 (194)
                      +.+..-.+... ....++||+||+-..     .+....+|+.+.++|++||.+++...+..+....++.           
T Consensus        85 v~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S-----------  153 (204)
T PF06080_consen   85 VSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES-----------  153 (204)
T ss_pred             cCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH-----------
Confidence            33321111000 001358999997532     4566888999999999999999988776654433322           


Q ss_pred             HHHHHHHHHhhc-CCCe
Q 029414          161 QAILDLNRSLAD-DPRV  176 (194)
Q Consensus       161 ~~~~~~~~~l~~-~~~~  176 (194)
                        -++|...|+. +|.+
T Consensus       154 --N~~FD~sLr~rdp~~  168 (204)
T PF06080_consen  154 --NAAFDASLRSRDPEW  168 (204)
T ss_pred             --HHHHHHHHhcCCCCc
Confidence              4667666764 4543

The function of this family is unknown.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.31  E-value=2.4e-11  Score=92.57  Aligned_cols=125  Identities=19%  Similarity=0.320  Sum_probs=96.1

Q ss_pred             cCCCCHHHHHHHHHHHHHc------CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcE
Q 029414            7 MMGTAPDAGQLMAMLLRLV------NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI   80 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~------~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v   80 (194)
                      .+...+++++++.......      ++..+||+|||+|..++.++..++ .++++++|.++.++..|.+|..+..+.+++
T Consensus       123 VlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i  201 (328)
T KOG2904|consen  123 VLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRI  201 (328)
T ss_pred             eeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence            4566777777777766633      456799999999999999999998 999999999999999999999999998888


Q ss_pred             EEEe----cchHHHHHHHhhcCCCCCceeEEEEeCCc-----------------------------cccHHHHHHHHhcc
Q 029414           81 NFIE----SEALSVLDQLLKYSENEGSFDYAFVDADK-----------------------------DNYCNYHERLMKLL  127 (194)
Q Consensus        81 ~~~~----~d~~~~~~~~~~~~~~~~~fD~i~id~~~-----------------------------~~~~~~~~~~~~~L  127 (194)
                      .+++    +|.....+.+      .+++|+++.+++.                             .....++..+.++|
T Consensus       202 ~v~~~~me~d~~~~~~l~------~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~L  275 (328)
T KOG2904|consen  202 EVIHNIMESDASDEHPLL------EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRML  275 (328)
T ss_pred             EEEecccccccccccccc------cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhc
Confidence            8874    3433332222      4789999877540                             11234455667999


Q ss_pred             cCCeEEEEecc
Q 029414          128 KVGGIAVYDNT  138 (194)
Q Consensus       128 ~~gG~lv~~~~  138 (194)
                      +|||.+.+.-.
T Consensus       276 q~gg~~~le~~  286 (328)
T KOG2904|consen  276 QPGGFEQLELV  286 (328)
T ss_pred             ccCCeEEEEec
Confidence            99999999643

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.31  E-value=8e-11  Score=96.04  Aligned_cols=120  Identities=15%  Similarity=0.209  Sum_probs=93.5

Q ss_pred             cCCCCHHHHHHHHHHH----HHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEE
Q 029414            7 MMGTAPDAGQLMAMLL----RLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN   81 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~----~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~   81 (194)
                      +++.......-|..++    ... ...+|||++||+|..++.+|...+ ..+|+++|+++++++.+++|++.+++. +++
T Consensus        33 Fyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~  110 (382)
T PRK04338         33 FYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEK  110 (382)
T ss_pred             eeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceE
Confidence            4444444444444332    222 235899999999999999998754 568999999999999999999999886 678


Q ss_pred             EEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           82 FIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        82 ~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +..+|+.+.+..       .++||+|++|+. .....+++.+.+.+++||++.+.
T Consensus       111 v~~~Da~~~l~~-------~~~fD~V~lDP~-Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        111 VFNKDANALLHE-------ERKFDVVDIDPF-GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             EEhhhHHHHHhh-------cCCCCEEEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence            999999776543       257999999975 44567888888999999999996

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=6.1e-11  Score=97.86  Aligned_cols=125  Identities=15%  Similarity=0.134  Sum_probs=102.9

Q ss_pred             cccccCCCCHHHHHHHHHHHHHc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC
Q 029414            3 ILRAMMGTAPDAGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH   78 (194)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~l~~~~----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~   78 (194)
                      ...+++++++...+.|...+...    +.++++|+-||.|.+++.+|..   ..+|+++|+++++++.|+++.+.+++. 
T Consensus       266 ~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~-  341 (432)
T COG2265         266 SPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGID-  341 (432)
T ss_pred             CCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCC-
Confidence            44579999999999998777633    4579999999999999999975   459999999999999999999999998 


Q ss_pred             cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccH-HHHHHHHhcccCCeEEEEe
Q 029414           79 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        79 ~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+++..+++.++.+.+.    ....+|.|++|++..... .+++.+ ..++|..++.++
T Consensus       342 N~~f~~~~ae~~~~~~~----~~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVS  395 (432)
T COG2265         342 NVEFIAGDAEEFTPAWW----EGYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVS  395 (432)
T ss_pred             cEEEEeCCHHHHhhhcc----ccCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence            59999999999887752    135799999999866555 555555 566777777774

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1.1e-10  Score=94.61  Aligned_cols=128  Identities=21%  Similarity=0.257  Sum_probs=100.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      +.+.....++...++...++.+|||..++.|.=|..+|..+.. +..|+++|.++..+...++++.+.|+. ++.+...|
T Consensus       138 ~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d  216 (355)
T COG0144         138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKD  216 (355)
T ss_pred             EEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecc
Confidence            3445556666666777778899999999999999999999874 355699999999999999999999987 68888888


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCc-------------------------cccHHHHHHHHhcccCCeEEEEecccc
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADK-------------------------DNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~-------------------------~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      +........    ..++||.|++|++.                         .-..++++.++++|||||.|+.+.+..
T Consensus       217 ~~~~~~~~~----~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~  291 (355)
T COG0144         217 ARRLAELLP----GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL  291 (355)
T ss_pred             ccccccccc----ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence            765433331    12369999999651                         112567889999999999999988764

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.30  E-value=4e-11  Score=87.46  Aligned_cols=103  Identities=12%  Similarity=-0.001  Sum_probs=79.4

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+..++..   ..+++++|+++.+++.+++++..   .++++++++|+.+....       ..+
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-------~~~   77 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-------KLQ   77 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-------ccC
Confidence            345679999999999999999986   46999999999999999998854   24899999999775321       246


Q ss_pred             eeEEEEeCCccccHHHHHHHHhc--ccCCeEEEEeccc
Q 029414          104 FDYAFVDADKDNYCNYHERLMKL--LKVGGIAVYDNTL  139 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~--L~~gG~lv~~~~~  139 (194)
                      ||.|+.+.+.......+..+.+.  +.++|+++++.-.
T Consensus        78 ~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~  115 (169)
T smart00650       78 PYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEV  115 (169)
T ss_pred             CCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHH
Confidence            99999987655445666666643  4478999886543

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.30  E-value=1.2e-11  Score=90.60  Aligned_cols=101  Identities=19%  Similarity=0.306  Sum_probs=80.4

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEE-EEecchHHHHHHHhhcCCCCCcee
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ...+||+|||+|.+-.+.-.  .+..+|+++|+++.+-+.+.+.+++... .++. +++++.+.. +++     .+++||
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l-~~l-----~d~s~D  147 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENL-PQL-----ADGSYD  147 (252)
T ss_pred             ccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcC-ccc-----ccCCee
Confidence            34689999999998544422  1578999999999999999999988754 4666 888887554 444     258999


Q ss_pred             EEEEe---CCccccHHHHHHHHhcccCCeEEEEe
Q 029414          106 YAFVD---ADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       106 ~i~id---~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .|++-   +..++....+++..++|+|||.|++-
T Consensus       148 tVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  148 TVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             eEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            99755   44788889999999999999999984

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.29  E-value=2.5e-11  Score=91.64  Aligned_cols=104  Identities=17%  Similarity=0.254  Sum_probs=86.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCcchHHhHHHHHHHcCCCC--cEEEEecchHHHHHHHhhcC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPE-----DGQITAIDVNRETYEIGLPIIKKAGVDH--KINFIESEALSVLDQLLKYS   98 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~-----~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~   98 (194)
                      +..++||+++|+|..+..+.+..+.     +++|+..|++|+++..++++..+.++-.  ++.++.+|+++..  +    
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp--F----  173 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP--F----  173 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC--C----
Confidence            4568999999999999999998863     2899999999999999999987777653  4899999997752  2    


Q ss_pred             CCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414           99 ENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        99 ~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                       .+..||...+...   ..+....+++++|.|||||.+.+-
T Consensus       174 -dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cL  213 (296)
T KOG1540|consen  174 -DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCL  213 (296)
T ss_pred             -CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence             2578998877654   567788999999999999998863

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=2e-11  Score=89.64  Aligned_cols=117  Identities=18%  Similarity=0.234  Sum_probs=88.9

Q ss_pred             CCHHHHHHHHHHHH--HcCCCeEEEEcccccHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcC--------CC-
Q 029414           10 TAPDAGQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAG--------VD-   77 (194)
Q Consensus        10 ~~~~~~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~--------~~-   77 (194)
                      +.+..-+.+...+.  +.++.+.||+|+|+|+.+..++..+...+. .++||.-++.++.+++++...-        +. 
T Consensus        64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~  143 (237)
T KOG1661|consen   64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR  143 (237)
T ss_pred             cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence            34444444444444  667889999999999999999977754554 4999999999999999997654        11 


Q ss_pred             CcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           78 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        78 ~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .++.++.||.....++       ..+||.|++.+..+.   ..+.+...|++||.|++-
T Consensus       144 ~~l~ivvGDgr~g~~e-------~a~YDaIhvGAaa~~---~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  144 GELSIVVGDGRKGYAE-------QAPYDAIHVGAAASE---LPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             CceEEEeCCccccCCc-------cCCcceEEEccCccc---cHHHHHHhhccCCeEEEe
Confidence            4678899998776554       479999999875443   345677899999999984

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.27  E-value=6e-11  Score=92.30  Aligned_cols=118  Identities=19%  Similarity=0.176  Sum_probs=83.4

Q ss_pred             HHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhh
Q 029414           17 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   96 (194)
Q Consensus        17 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~   96 (194)
                      .+...+...++++|||||||+|+.+..++...  ...|+++|.++..+-..+..-.-.+....+..+ ....+.++.   
T Consensus       106 rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~---  179 (315)
T PF08003_consen  106 RLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPN---  179 (315)
T ss_pred             HHHhhhCCcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhccc---
Confidence            33333334578999999999999999999874  357999999987665543222222332223333 233344443   


Q ss_pred             cCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccccc
Q 029414           97 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV  144 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~  144 (194)
                          .+.||.||+-+.   ..++...++.+...|++||.+|++.....|..
T Consensus       180 ----~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~  226 (315)
T PF08003_consen  180 ----LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDE  226 (315)
T ss_pred             ----cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCC
Confidence                378999999887   56788899999999999999999887776643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.27  E-value=1.1e-10  Score=88.99  Aligned_cols=98  Identities=17%  Similarity=0.194  Sum_probs=74.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...+..+++.+..+|..    ..      .++|
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~------~~~f  128 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SL------LGRF  128 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hc------cCCc
Confidence            45679999999999999999875   45799999999999999999988877568999998832    21      3689


Q ss_pred             eEEEEeCC-----ccccHHHHHHHHhcccCCeEEEE
Q 029414          105 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       105 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      |+|++...     .+.....++.+.+.+++++++.+
T Consensus       129 D~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~  164 (230)
T PRK07580        129 DTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF  164 (230)
T ss_pred             CEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence            99987643     22344566666666655454443

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.27  E-value=8.7e-11  Score=77.34  Aligned_cols=99  Identities=20%  Similarity=0.320  Sum_probs=78.5

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414           29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  108 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~  108 (194)
                      +++|+|||.|..+..++. . ...+++++|.++...+.+++...... ..+++++.+|..+.....      .++||+|+
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~d~i~   71 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEA------DESFDVII   71 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhcccc------CCceEEEE
Confidence            489999999999999987 2 37899999999999998886444333 347899999987764311      47899999


Q ss_pred             EeCCc----cccHHHHHHHHhcccCCeEEEEe
Q 029414          109 VDADK----DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       109 id~~~----~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++...    .....+++.+.+.++|||.+++.
T Consensus        72 ~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          72 SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             EccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            98753    24577889999999999999885

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.27  E-value=2.4e-10  Score=90.20  Aligned_cols=99  Identities=15%  Similarity=0.118  Sum_probs=80.9

Q ss_pred             ccccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414            4 LRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   83 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~   83 (194)
                      +++++.+++.....+...+...++.+|||||||+|..|..++..   ..+++++|+|+++++.+++++...+..++++++
T Consensus        14 ~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii   90 (294)
T PTZ00338         14 FGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVI   90 (294)
T ss_pred             CCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEE
Confidence            45567777777777777776667789999999999999999986   458999999999999999999877655689999


Q ss_pred             ecchHHHHHHHhhcCCCCCceeEEEEeCCcc
Q 029414           84 ESEALSVLDQLLKYSENEGSFDYAFVDADKD  114 (194)
Q Consensus        84 ~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~  114 (194)
                      ++|+.+.  .       .+.||.|+.+.+..
T Consensus        91 ~~Dal~~--~-------~~~~d~VvaNlPY~  112 (294)
T PTZ00338         91 EGDALKT--E-------FPYFDVCVANVPYQ  112 (294)
T ss_pred             ECCHhhh--c-------ccccCEEEecCCcc
Confidence            9999774  1       24689999876643

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.26  E-value=2.7e-10  Score=92.29  Aligned_cols=125  Identities=11%  Similarity=0.067  Sum_probs=91.7

Q ss_pred             cccCCCCHHHHHHHHHHH-HHcC--CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEE
Q 029414            5 RAMMGTAPDAGQLMAMLL-RLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN   81 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~-~~~~--~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~   81 (194)
                      ..+++++....+.|...+ ...+  +.++||+|||+|..++.++...   .+|+++|.++++++.+++++..+++. +++
T Consensus       173 ~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~-~v~  248 (353)
T TIGR02143       173 NSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID-NVQ  248 (353)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-cEE
Confidence            357778887776666443 3222  3579999999999999999874   38999999999999999999999886 799


Q ss_pred             EEecchHHHHHHHhh-------cC--CCCCceeEEEEeCCccc-cHHHHHHHHhcccCCeEEEEe
Q 029414           82 FIESEALSVLDQLLK-------YS--ENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        82 ~~~~d~~~~~~~~~~-------~~--~~~~~fD~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++.+|+.+.++....       ..  .....||+||+|++... ....++.+.+   |+++++++
T Consensus       249 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs  310 (353)
T TIGR02143       249 IIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS  310 (353)
T ss_pred             EEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence            999999887654210       00  00124899999998544 3455555543   78888875

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=99.26  E-value=6.4e-11  Score=87.79  Aligned_cols=163  Identities=16%  Similarity=0.208  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      -.|.-...+..++-..+|+.|+|+|+..|.+++++|..+   ...++|+++|++....+.  +.++...+.+++++++||
T Consensus        16 q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gd   93 (206)
T PF04989_consen   16 QYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGD   93 (206)
T ss_dssp             S-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-
T ss_pred             cCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECC
Confidence            345556667777777899999999999999999987544   347899999996544322  223334556799999999


Q ss_pred             hHHH--HHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEecccccccccCCCC--CCCCCcccchH
Q 029414           87 ALSV--LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEE--QVPDHFRGSSR  160 (194)
Q Consensus        87 ~~~~--~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~--~~~~~~~~~~~  160 (194)
                      +.+.  +.+.... .......+|+.|+.  ..+..+.|+...+++++|+++|+.|............  ....     ..
T Consensus        94 s~d~~~~~~v~~~-~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~-----g~  167 (206)
T PF04989_consen   94 SIDPEIVDQVREL-ASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGP-----GN  167 (206)
T ss_dssp             SSSTHHHHTSGSS-----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS----------------
T ss_pred             CCCHHHHHHHHHh-hccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhh-----hh
Confidence            8652  3332111 11246779999987  5677888899999999999999998876543322110  0000     11


Q ss_pred             HHHHHHHHHhhcCCCeEEEe
Q 029414          161 QAILDLNRSLADDPRVQLSH  180 (194)
Q Consensus       161 ~~~~~~~~~l~~~~~~~~~~  180 (194)
                      .-..+..+++.++++|+.-.
T Consensus       168 ~p~~av~~fL~~~~~f~iD~  187 (206)
T PF04989_consen  168 NPKTAVKEFLAEHPDFEIDT  187 (206)
T ss_dssp             --HHHHHHHHHTTTTEEEET
T ss_pred             HHHHHHHHHHHHCCCcEecc
Confidence            12677777888899876543

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.25  E-value=8e-11  Score=84.70  Aligned_cols=106  Identities=24%  Similarity=0.393  Sum_probs=82.3

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      ..+|||+|||.|.....|+..-- .+.++++|.++.+++.|+...++.+.++.|++.+.|..+.  ++     ..++||+
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~-----~~~qfdl  139 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DF-----LSGQFDL  139 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cc-----cccceeE
Confidence            44999999999999999998654 4679999999999999999999999987799999887663  22     2467887


Q ss_pred             EE----Ee-----CC--ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          107 AF----VD-----AD--KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       107 i~----id-----~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      |+    .|     +.  .....-++..+.++|+|||++++..+.|
T Consensus       140 vlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~  184 (227)
T KOG1271|consen  140 VLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF  184 (227)
T ss_pred             EeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence            75    12     11  2223456777889999999999976654

>PLN02672 methionine S-methyltransferase

Probab=99.25  E-value=1.5e-10  Score=103.95  Aligned_cols=125  Identities=15%  Similarity=0.153  Sum_probs=93.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC----
Q 029414            6 AMMGTAPDAGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD----   77 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----   77 (194)
                      +.+...+++..++..+....    ++++|||+|||+|..++.++...+ ..+++++|+++++++.|++|...++++    
T Consensus        94 ~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~  172 (1082)
T PLN02672         94 SIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGL  172 (1082)
T ss_pred             CcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccc
Confidence            34556677777777743321    246899999999999999999876 679999999999999999999876432    


Q ss_pred             -----------CcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc---------------------------------
Q 029414           78 -----------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---------------------------------  113 (194)
Q Consensus        78 -----------~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~---------------------------------  113 (194)
                                 ++++++++|..+.....      ..+||+|+.+.+.                                 
T Consensus       173 ~~~~~~~~~l~~rV~f~~sDl~~~~~~~------~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g  246 (1082)
T PLN02672        173 PVYDGEGKTLLDRVEFYESDLLGYCRDN------NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQG  246 (1082)
T ss_pred             cccccccccccccEEEEECchhhhcccc------CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccC
Confidence                       47999999987754321      2379999877540                                 


Q ss_pred             ----cc----cHHHHHHHHhcccCCeEEEEec
Q 029414          114 ----DN----YCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       114 ----~~----~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                          .+    +...++.+.+.|+|||.+++.-
T Consensus       247 ~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        247 FVEDQFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             CCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence                00    1345666778999999999964

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.24  E-value=2.4e-10  Score=92.88  Aligned_cols=124  Identities=15%  Similarity=0.091  Sum_probs=98.2

Q ss_pred             cccCCCCHHHHHHHHH-HHHHcCC---CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcE
Q 029414            5 RAMMGTAPDAGQLMAM-LLRLVNA---KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI   80 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~-l~~~~~~---~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v   80 (194)
                      +|.|..+++..-++.. +....++   .+|||..||+|..++.++...+...+|+++|+++++++.+++|++.++.. ++
T Consensus        19 NP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~   97 (374)
T TIGR00308        19 NPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NI   97 (374)
T ss_pred             CchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cE
Confidence            4556666665544332 3333333   48999999999999999987532468999999999999999999988876 78


Q ss_pred             EEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           81 NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        81 ~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +++++|+...+...      ..+||+|++|+ ......+++.+.+.+++||+|.+.
T Consensus        98 ~v~~~Da~~~l~~~------~~~fDvIdlDP-fGs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308        98 EVPNEDAANVLRYR------NRKFHVIDIDP-FGTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             EEEchhHHHHHHHh------CCCCCEEEeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence            99999998887654      36799999998 455568999999999999999986

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.24  E-value=6.8e-11  Score=88.02  Aligned_cols=114  Identities=20%  Similarity=0.236  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414           12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   91 (194)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   91 (194)
                      +...+-.+......++..|+|..||.|.+++.+|...+ ..+|+++|++|.+++..+++++.+++.+++.++.+|+.++.
T Consensus        87 rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~  165 (200)
T PF02475_consen   87 RLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL  165 (200)
T ss_dssp             GGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--
T ss_pred             ccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc
Confidence            33333334333345788999999999999999998544 67999999999999999999999999989999999998876


Q ss_pred             HHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414           92 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +.        ..||-|+++-+. ....+++.+..++++||++.+
T Consensus       166 ~~--------~~~drvim~lp~-~~~~fl~~~~~~~~~~g~ihy  200 (200)
T PF02475_consen  166 PE--------GKFDRVIMNLPE-SSLEFLDAALSLLKEGGIIHY  200 (200)
T ss_dssp             -T--------T-EEEEEE--TS-SGGGGHHHHHHHEEEEEEEEE
T ss_pred             Cc--------cccCEEEECChH-HHHHHHHHHHHHhcCCcEEEC
Confidence            52        789999997653 444788999999999998753

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.23  E-value=2.7e-11  Score=94.39  Aligned_cols=105  Identities=23%  Similarity=0.301  Sum_probs=75.1

Q ss_pred             CCCeEEEEcccccHH----HHHHHhhCCC----CCEEEEEeCCcchHHhHHHHHH----HcCC-----------------
Q 029414           26 NAKKTIEIGVFTGYS----LLLTALTIPE----DGQITAIDVNRETYEIGLPIIK----KAGV-----------------   76 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~----~~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~----~~~~-----------------   76 (194)
                      ++.+|+++|||+|.-    +..+++..+.    +.+|+++|+|+.+++.|++.+-    ..++                 
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            456999999999974    3344444432    4689999999999999997531    0111                 


Q ss_pred             -----CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEec
Q 029414           77 -----DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        77 -----~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                           ..++++.++|..+....       .++||+|++...     .+....+++.+.+.|+|||++++..
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~-------~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPP-------LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCc-------cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                 13577888887653221       378999998643     2345678999999999999999953

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.23  E-value=7.8e-11  Score=87.37  Aligned_cols=100  Identities=15%  Similarity=0.201  Sum_probs=71.8

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~  101 (194)
                      ..++.+|||+|||+|..+..++....+.++++++|+++..           .. ++++++.+|..+.  ...+... ...
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~-~~~   96 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRER-VGD   96 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHH-hCC
Confidence            3567899999999999999998887546799999999854           12 2677887776442  1111100 013


Q ss_pred             CceeEEEEeCCc-------c-------ccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADK-------D-------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~-------~-------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++||+|++++..       .       .....++.+.+.|+|||.+++.
T Consensus        97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            579999997531       0       1256788999999999999995

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=3.4e-10  Score=86.28  Aligned_cols=112  Identities=14%  Similarity=0.164  Sum_probs=90.9

Q ss_pred             HHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhh
Q 029414           17 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   96 (194)
Q Consensus        17 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~   96 (194)
                      ++-+.+...++.+|||-|+|+|..+.++++.+++.++++.+|......+.|.+.|+..++++++++.+.|....-...  
T Consensus        96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~--  173 (314)
T KOG2915|consen   96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI--  173 (314)
T ss_pred             HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc--
Confidence            334445577889999999999999999999998899999999999999999999999999999999999987632221  


Q ss_pred             cCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414           97 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                         ....+|.||+|-+  .+..++..+++.||.+|.-++
T Consensus       174 ---ks~~aDaVFLDlP--aPw~AiPha~~~lk~~g~r~c  207 (314)
T KOG2915|consen  174 ---KSLKADAVFLDLP--APWEAIPHAAKILKDEGGRLC  207 (314)
T ss_pred             ---cccccceEEEcCC--ChhhhhhhhHHHhhhcCceEE
Confidence               1468999999964  333556667778888875444

>PHA03412 putative methyltransferase; Provisional

Probab=99.22  E-value=2.6e-10  Score=86.29  Aligned_cols=118  Identities=14%  Similarity=0.232  Sum_probs=82.9

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEE
Q 029414            5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINF   82 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~   82 (194)
                      +.+++.......+.   .......+|||+|||+|..++.++..+.  +..+|+++|+++.+++.|++++.      ++.+
T Consensus        31 GqFfTP~~iAr~~~---i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~  101 (241)
T PHA03412         31 GAFFTPIGLARDFT---IDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATW  101 (241)
T ss_pred             CccCCCHHHHHHHH---HhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEE
Confidence            45666665444332   1223467999999999999999988653  25699999999999999997752      5788


Q ss_pred             EecchHHHHHHHhhcCCCCCceeEEEEeCCc-----cc----------cHHHHHHHHhcccCCeEEEEeccc
Q 029414           83 IESEALSVLDQLLKYSENEGSFDYAFVDADK-----DN----------YCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        83 ~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~-----~~----------~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +.+|.....  +      .++||+|+.+++.     .+          ...+++.+.+++++|+.|+=...+
T Consensus       102 ~~~D~~~~~--~------~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~  165 (241)
T PHA03412        102 INADALTTE--F------DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA  165 (241)
T ss_pred             EEcchhccc--c------cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc
Confidence            888886531  1      3689999998761     11          245678888888887775444433

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.21  E-value=2.5e-10  Score=83.55  Aligned_cols=108  Identities=22%  Similarity=0.272  Sum_probs=71.9

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--CCCcEEEEecchHHHH-HHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSVL-DQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-~~~~~~~~~  100 (194)
                      ..++++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.+++.++  ...++.+..-+..+.. ....    .
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----~  116 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----E  116 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----S
T ss_pred             hcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----c
Confidence            45789999999999999999998754 67999999998 9999999999876  4457777766543322 2221    1


Q ss_pred             CCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ..+||+|+..-.   .+....+++.+.++++++|.+++..
T Consensus       117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen  117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            368999986432   5667788888999999998876653

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK05785 hypothetical protein; Provisional

Probab=99.21  E-value=1.6e-10  Score=88.06  Aligned_cols=88  Identities=13%  Similarity=0.100  Sum_probs=69.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..++...  +.+++++|+++++++.+++..         ..+++|+.+. +-      .+++||
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~l-p~------~d~sfD  112 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---------DKVVGSFEAL-PF------RDKSFD  112 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---------ceEEechhhC-CC------CCCCEE
Confidence            47899999999999999998864  469999999999999988641         2456777553 21      257899


Q ss_pred             EEEEeCC---ccccHHHHHHHHhcccCCe
Q 029414          106 YAFVDAD---KDNYCNYHERLMKLLKVGG  131 (194)
Q Consensus       106 ~i~id~~---~~~~~~~~~~~~~~L~~gG  131 (194)
                      +|++...   ..+....++++.+.|||..
T Consensus       113 ~v~~~~~l~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        113 VVMSSFALHASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             EEEecChhhccCCHHHHHHHHHHHhcCce
Confidence            9998754   4567789999999999953

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.19  E-value=3.5e-10  Score=80.27  Aligned_cols=122  Identities=18%  Similarity=0.123  Sum_probs=98.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +..-+++..++.|...+.-..+.-|||+|.|+|..|..+....-+...++++|.+++......+.+      +.++++.|
T Consensus        28 aI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~g  101 (194)
T COG3963          28 AILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIING  101 (194)
T ss_pred             eecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCcccccc
Confidence            455678888888888888888889999999999999998877665789999999999999888776      25679999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEE
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      |+.+.-..+..+  ....||.|++.-+     .....+.++.+...|++||.++-
T Consensus       102 da~~l~~~l~e~--~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq  154 (194)
T COG3963         102 DAFDLRTTLGEH--KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ  154 (194)
T ss_pred             chhhHHHHHhhc--CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence            998764333222  2457999998754     34567889999999999999886

>PRK06202 hypothetical protein; Provisional

Probab=99.19  E-value=8.5e-11  Score=89.99  Aligned_cols=104  Identities=13%  Similarity=0.074  Sum_probs=73.1

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ..++.+|||+|||+|..+..++...+   ++.+++++|+++++++.++++....    ++++...++... +.      .
T Consensus        58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~~------~  126 (232)
T PRK06202         58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-VA------E  126 (232)
T ss_pred             CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-cc------c
Confidence            34667999999999999998886432   2469999999999999998876433    345555544332 11      1


Q ss_pred             CCceeEEEEeCCc---c--ccHHHHHHHHhcccCCeEEEEecccc
Q 029414          101 EGSFDYAFVDADK---D--NYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       101 ~~~fD~i~id~~~---~--~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      .++||+|++....   .  ....+++.+.+.++  |.+++.+...
T Consensus       127 ~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~  169 (232)
T PRK06202        127 GERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR  169 (232)
T ss_pred             CCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence            4689999987541   1  23468888988887  5666666544

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=99.19  E-value=1.9e-09  Score=84.80  Aligned_cols=153  Identities=22%  Similarity=0.262  Sum_probs=113.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .+......+...++...++.+|||..++.|.=|..+|..+...+.+++.|+++..+...++++.+.|.. ++.+...|+.
T Consensus        68 ~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~  146 (283)
T PF01189_consen   68 YVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADAR  146 (283)
T ss_dssp             EEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHH
T ss_pred             EecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccc
Confidence            344444555555666667789999999999999999999987899999999999999999999999986 7888888887


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCc-------------------------cccHHHHHHHHhcc----cCCeEEEEeccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADK-------------------------DNYCNYHERLMKLL----KVGGIAVYDNTL  139 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~-------------------------~~~~~~~~~~~~~L----~~gG~lv~~~~~  139 (194)
                      ...+...     ...||.|++|++.                         .-....++.+++.+    +|||.+|...+.
T Consensus       147 ~~~~~~~-----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS  221 (283)
T PF01189_consen  147 KLDPKKP-----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS  221 (283)
T ss_dssp             HHHHHHH-----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred             ccccccc-----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence            7755442     2469999999751                         01246688899999    999999998765


Q ss_pred             ccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecC
Q 029414          140 WGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG  184 (194)
Q Consensus       140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~  184 (194)
                      ..-.      +        -...++.|   +.++|+++..-++..
T Consensus       222 ~~~e------E--------NE~vV~~f---l~~~~~~~l~~~~~~  249 (283)
T PF01189_consen  222 LSPE------E--------NEEVVEKF---LKRHPDFELVPIPLP  249 (283)
T ss_dssp             HHGG------G--------THHHHHHH---HHHSTSEEEECCESS
T ss_pred             HHHH------H--------HHHHHHHH---HHhCCCcEEEecccc
Confidence            4221      1        11224555   445777776655443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PHA03411 putative methyltransferase; Provisional

Probab=99.17  E-value=7e-10  Score=85.83  Aligned_cols=96  Identities=14%  Similarity=0.177  Sum_probs=74.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ...+|||+|||+|..++.++...+ ..+++++|+++.+++.+++++      ++++++.+|..+...        ..+||
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~kFD  128 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NEKFD  128 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cCCCc
Confidence            457999999999999998888654 579999999999999998863      268899999876532        36799


Q ss_pred             EEEEeCCc-----c---c---------------cHHHHHHHHhcccCCeEEEEe
Q 029414          106 YAFVDADK-----D---N---------------YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       106 ~i~id~~~-----~---~---------------~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|+++.+.     .   .               ..++++....+|+|+|.+.+.
T Consensus       129 lIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        129 VVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             EEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            99998651     0   0               134556667889999977664

>PRK00536 speE spermidine synthase; Provisional

Probab=99.16  E-value=8.7e-10  Score=85.25  Aligned_cols=99  Identities=8%  Similarity=0.059  Sum_probs=79.2

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--C-CCcEEEEecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ..+|++||-||.|-|..+..++++ +  .+|+.+|+|++.++.+|+.+....  + +++++++..    . .+.     .
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-~~~-----~  136 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-LDL-----D  136 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-hhc-----c
Confidence            457899999999999999999997 2  399999999999999999775432  2 368888751    1 111     1


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .++||+|++|..  ....+++.+.+.|+|||+++.+.
T Consensus       137 ~~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        137 IKKYDLIICLQE--PDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             CCcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEECC
Confidence            368999999964  44688899999999999999964

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.15  E-value=1.1e-10  Score=83.89  Aligned_cols=78  Identities=23%  Similarity=0.303  Sum_probs=59.5

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  107 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i  107 (194)
                      ..|+|+.||.|..++.||+...   +|+++|+++..++.++.|.+-.|+.++++++++|+.+.+..+..    ...+|+|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~v   73 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVV   73 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEE
T ss_pred             CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEE
Confidence            3699999999999999999854   99999999999999999999999988999999999997665421    1228999


Q ss_pred             EEeCC
Q 029414          108 FVDAD  112 (194)
Q Consensus       108 ~id~~  112 (194)
                      |++++
T Consensus        74 FlSPP   78 (163)
T PF09445_consen   74 FLSPP   78 (163)
T ss_dssp             EE---
T ss_pred             EECCC
Confidence            99965

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.13  E-value=4.2e-09  Score=83.83  Aligned_cols=83  Identities=13%  Similarity=0.252  Sum_probs=65.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc-CCCCcEEEEe-cchHHHHHHHhhcCCCCCc
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIE-SEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~  103 (194)
                      +..++||||||+|.....++...+ +.+++++|+++.+++.|+++++.+ ++.+++++.. .+....+..+..   ..+.
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~---~~~~  189 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH---KNER  189 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc---cCCc
Confidence            347899999999988888887765 789999999999999999999999 7888898864 444444333211   1468


Q ss_pred             eeEEEEeCC
Q 029414          104 FDYAFVDAD  112 (194)
Q Consensus       104 fD~i~id~~  112 (194)
                      ||+|+++++
T Consensus       190 fDlivcNPP  198 (321)
T PRK11727        190 FDATLCNPP  198 (321)
T ss_pred             eEEEEeCCC
Confidence            999999976

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.13  E-value=5.7e-10  Score=83.38  Aligned_cols=104  Identities=15%  Similarity=0.232  Sum_probs=82.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCcchHHhHHHHHHHcCC-CCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      .++.+|||.++|-|+.++.-++.   ++ +|+++|.+|..++.|+-|-=..++ ..+++++.||+.+..+.+     .++
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-----~D~  204 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-----DDE  204 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-----Ccc
Confidence            35789999999999999998875   44 999999999999887654311121 236899999999998887     367


Q ss_pred             ceeEEEEeCCc------cccHHHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +||+|+-|++.      -....+++++.+.|+|||.++-.
T Consensus       205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY  244 (287)
T COG2521         205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY  244 (287)
T ss_pred             ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence            89999999872      23467889999999999998753

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.12  E-value=2.6e-10  Score=84.93  Aligned_cols=112  Identities=14%  Similarity=0.161  Sum_probs=77.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ...++||+|+|.|..|..++...  -.+|..+|+.+..++.|++.+.... ....++++.-..++.|.       ..+||
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-------~~~YD  124 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE-------EGKYD  124 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-----------TT-EE
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC-------CCcEe
Confidence            45789999999999999876554  3599999999999999998775421 22356777666666554       47899


Q ss_pred             EEEEeCC-----ccccHHHHHHHHhcccCCeEEEE-eccccccc-ccCC
Q 029414          106 YAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY-DNTLWGGT-VAVP  147 (194)
Q Consensus       106 ~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~-~~~~~~g~-~~~~  147 (194)
                      +|++...     ..+..++|+.|...|+|||+|++ +|+...+. +.++
T Consensus       125 lIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~  173 (218)
T PF05891_consen  125 LIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDE  173 (218)
T ss_dssp             EEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEET
T ss_pred             EEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCC
Confidence            9999865     35678899999999999999999 44554443 4444

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.11  E-value=1.1e-09  Score=87.41  Aligned_cols=117  Identities=20%  Similarity=0.167  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      ..+-.+..-....+.+|+|..+|.|.+++.+|....  .+|+++|++|.+++..++|+..+++.+.+..+.||+.+..+.
T Consensus       176 ~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~  253 (341)
T COG2520         176 STERARVAELVKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE  253 (341)
T ss_pred             hHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc
Confidence            334444444455689999999999999999999754  349999999999999999999999987799999999998776


Q ss_pred             HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccc
Q 029414           94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      +       +.+|-|++..+. ....++..+...+++||+|.++....
T Consensus       254 ~-------~~aDrIim~~p~-~a~~fl~~A~~~~k~~g~iHyy~~~~  292 (341)
T COG2520         254 L-------GVADRIIMGLPK-SAHEFLPLALELLKDGGIIHYYEFVP  292 (341)
T ss_pred             c-------ccCCEEEeCCCC-cchhhHHHHHHHhhcCcEEEEEeccc
Confidence            4       789999997643 55678889999999999999987653

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.11  E-value=2.4e-09  Score=83.85  Aligned_cols=106  Identities=14%  Similarity=0.033  Sum_probs=77.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      ..+.+++.....+...+...++.+|||+|||+|..+..++...   .+++++|+++++++.+++++..    ++++++++
T Consensus        22 q~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~   94 (272)
T PRK00274         22 QNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEG   94 (272)
T ss_pred             cCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEC
Confidence            4456666666666666666677899999999999999999874   3999999999999999987742    48999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHh
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK  125 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~  125 (194)
                      |+.+....       .-.+|.|+.+.+.......+..+..
T Consensus        95 D~~~~~~~-------~~~~~~vv~NlPY~iss~ii~~~l~  127 (272)
T PRK00274         95 DALKVDLS-------ELQPLKVVANLPYNITTPLLFHLLE  127 (272)
T ss_pred             hhhcCCHH-------HcCcceEEEeCCccchHHHHHHHHh
Confidence            98775211       0115788877654444555555543

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.10  E-value=2.2e-09  Score=83.46  Aligned_cols=95  Identities=16%  Similarity=0.050  Sum_probs=78.1

Q ss_pred             ccccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414            4 LRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   83 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~   83 (194)
                      +++.+.+++.....+...+...++.+|||+|||+|..+..++..   ..+++++|+++.+++.+++++..   .++++++
T Consensus         7 ~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii   80 (258)
T PRK14896          7 LGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEII   80 (258)
T ss_pred             CCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEE
Confidence            46677888888888888777777889999999999999999987   35899999999999999988854   2489999


Q ss_pred             ecchHHHHHHHhhcCCCCCceeEEEEeCCc
Q 029414           84 ESEALSVLDQLLKYSENEGSFDYAFVDADK  113 (194)
Q Consensus        84 ~~d~~~~~~~~~~~~~~~~~fD~i~id~~~  113 (194)
                      ++|+.+..         ...||.|+.+.+.
T Consensus        81 ~~D~~~~~---------~~~~d~Vv~NlPy  101 (258)
T PRK14896         81 EGDALKVD---------LPEFNKVVSNLPY  101 (258)
T ss_pred             EeccccCC---------chhceEEEEcCCc
Confidence            99987641         1458999887653

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.10  E-value=2e-09  Score=81.58  Aligned_cols=124  Identities=8%  Similarity=0.003  Sum_probs=86.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHH------------HcCC
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK------------KAGV   76 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~------------~~~~   76 (194)
                      .+++...+.+..+. ..++.+||..|||.|....+||..   +.+|+++|+++.+++.+.+...            ... 
T Consensus        27 ~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~-  101 (226)
T PRK13256         27 SPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK-  101 (226)
T ss_pred             CCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceec-
Confidence            34444444443332 224579999999999999999986   6789999999999988755210            011 


Q ss_pred             CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414           77 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus        77 ~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      ..+++++++|..+.-+.-    ...++||+|+-.+.     ......+.+.+.++|+|||.++.-.....
T Consensus       102 ~~~i~~~~gD~f~l~~~~----~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~  167 (226)
T PRK13256        102 GDDIEIYVADIFNLPKIA----NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD  167 (226)
T ss_pred             cCceEEEEccCcCCCccc----cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence            237899999998752210    01367999875432     45677888999999999999888654433

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.10  E-value=4.4e-10  Score=84.37  Aligned_cols=108  Identities=21%  Similarity=0.336  Sum_probs=78.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC------------------------------
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG------------------------------   75 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------------------------------   75 (194)
                      .++.+|||||.+|..|+.+|+.+. ...+.|+|+++..+..|+++++..-                              
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a  136 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA  136 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence            578999999999999999999987 6789999999999999999885321                              


Q ss_pred             ----CCCcEEEEec----chHHHHHHHhhcCCCCCceeEEEEeCC---------ccccHHHHHHHHhcccCCeEEEEecc
Q 029414           76 ----VDHKINFIES----EALSVLDQLLKYSENEGSFDYAFVDAD---------KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        76 ----~~~~v~~~~~----d~~~~~~~~~~~~~~~~~fD~i~id~~---------~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                          .++++.+...    +..+++..      ..+.||+|+|-..         ......+|..++++|.|||++|+.--
T Consensus       137 ~t~~~p~n~~f~~~n~vle~~dfl~~------~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ  210 (288)
T KOG2899|consen  137 FTTDFPDNVWFQKENYVLESDDFLDM------IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ  210 (288)
T ss_pred             ccccCCcchhcccccEEEecchhhhh------ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence                0111111111    11222211      2478999986532         45568899999999999999999754


Q ss_pred             cc
Q 029414          139 LW  140 (194)
Q Consensus       139 ~~  140 (194)
                      -|
T Consensus       211 pW  212 (288)
T KOG2899|consen  211 PW  212 (288)
T ss_pred             ch
Confidence            44

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.08  E-value=3.7e-09  Score=84.20  Aligned_cols=96  Identities=17%  Similarity=0.088  Sum_probs=69.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC----CCcEEEEecchHHHHHHHhhcCCCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++.....    ..++++..+|..+.          .
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~  210 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------S  210 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------C
Confidence            4679999999999999999985   56999999999999999999876521    13578888886432          3


Q ss_pred             CceeEEEEeCCc-----cccHHHHHHHHhcccCCeEEEE
Q 029414          102 GSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       102 ~~fD~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ++||+|++....     ......++.+. .+.++|+++.
T Consensus       211 ~~fD~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs  248 (315)
T PLN02585        211 GKYDTVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIIS  248 (315)
T ss_pred             CCcCEEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEE
Confidence            689999865331     11223445554 3456666664

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.07  E-value=1.3e-09  Score=80.10  Aligned_cols=120  Identities=19%  Similarity=0.198  Sum_probs=88.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCE---------EEEEeCCcchHHhHHHHHHHcCCCCc
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------ITAIDVNRETYEIGLPIIKKAGVDHK   79 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~---------v~~iD~~~~~~~~a~~~~~~~~~~~~   79 (194)
                      +..+..+..|-.++...++..+||--||+|...++.|.... +..         +++.|+++++++.+++|+...++...
T Consensus        11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~-~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~   89 (179)
T PF01170_consen   11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGA-NIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY   89 (179)
T ss_dssp             SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHT-TTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred             CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhh-CcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence            56677788888888877888999999999999988776654 333         99999999999999999999999888


Q ss_pred             EEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc-----------cccHHHHHHHHhcccCCeEEEEe
Q 029414           80 INFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        80 v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~-----------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +.+.+.|+.+.. .      ..+.+|.|+.|.+.           .-|..+++.+.+.+++..++++.
T Consensus        90 i~~~~~D~~~l~-~------~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen   90 IDFIQWDARELP-L------PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT  150 (179)
T ss_dssp             EEEEE--GGGGG-G------TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred             eEEEecchhhcc-c------ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence            999999987764 1      14789999999761           22456677888889986666654

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=99.07  E-value=1.7e-09  Score=79.62  Aligned_cols=97  Identities=23%  Similarity=0.278  Sum_probs=82.1

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414           29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  108 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~  108 (194)
                      +++|+|+|.|.-++.+|-..| +.+++.+|.........+......+++ |++++++++++  ..      ..+.||+|.
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~------~~~~fd~v~  120 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE------YRESFDVVT  120 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT------TTT-EEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc------cCCCccEEE
Confidence            799999999999999999987 899999999999999999999999997 89999999988  22      157899999


Q ss_pred             EeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          109 VDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       109 id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+.. ....+++.+.+++++||.+++-
T Consensus       121 aRAv~-~l~~l~~~~~~~l~~~G~~l~~  147 (184)
T PF02527_consen  121 ARAVA-PLDKLLELARPLLKPGGRLLAY  147 (184)
T ss_dssp             EESSS-SHHHHHHHHGGGEEEEEEEEEE
T ss_pred             eehhc-CHHHHHHHHHHhcCCCCEEEEE
Confidence            98753 5567889999999999999983

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.07  E-value=2e-09  Score=81.47  Aligned_cols=120  Identities=18%  Similarity=0.236  Sum_probs=84.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH-cC---------
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AG---------   75 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~---------   75 (194)
                      ..-.+++...+++.. ....++.+||..|||.|....+||..   +.+|+++|+++.+++.+.+.-.. ..         
T Consensus        18 ~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~   93 (218)
T PF05724_consen   18 DQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKR   93 (218)
T ss_dssp             --TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEE
T ss_pred             CCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceee
Confidence            344566666666666 33456679999999999999999985   67999999999999887432211 00         


Q ss_pred             -CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeC-----CccccHHHHHHHHhcccCCeEEEE
Q 029414           76 -VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        76 -~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                       -..+++++++|..+.-+..      .++||+|+=..     +.....++.+.+.++|+|||.+++
T Consensus        94 ~~~~~i~~~~gDfF~l~~~~------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL  153 (218)
T PF05724_consen   94 YQAGRITIYCGDFFELPPED------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL  153 (218)
T ss_dssp             ETTSSEEEEES-TTTGGGSC------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred             ecCCceEEEEcccccCChhh------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence             0236899999998853331      25799997432     256678889999999999999444

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=6.5e-10  Score=77.15  Aligned_cols=115  Identities=17%  Similarity=0.269  Sum_probs=86.4

Q ss_pred             cccccCCCCHHHHHHHHHHHHHc---CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc
Q 029414            3 ILRAMMGTAPDAGQLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK   79 (194)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~l~~~~---~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~   79 (194)
                      .+.++++.....+.+++.+-...   .++.++|+|||+|..+..++  +++...++++|++|++++.+++|.+.+.+  +
T Consensus        22 ~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEv--q   97 (185)
T KOG3420|consen   22 LLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEV--Q   97 (185)
T ss_pred             hhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhh--h
Confidence            35567777777777777776654   47899999999999884444  44578899999999999999999999887  4


Q ss_pred             EEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhccc
Q 029414           80 INFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLK  128 (194)
Q Consensus        80 v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~  128 (194)
                      +.+.++|..+....       .+.||.++++.+     .....+++..++++.+
T Consensus        98 idlLqcdildle~~-------~g~fDtaviNppFGTk~~~aDm~fv~~al~~~~  144 (185)
T KOG3420|consen   98 IDLLQCDILDLELK-------GGIFDTAVINPPFGTKKKGADMEFVSAALKVAS  144 (185)
T ss_pred             hheeeeeccchhcc-------CCeEeeEEecCCCCcccccccHHHHHHHHHHHH
Confidence            68888888775444       478999999976     2233455555555544

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=99.06  E-value=5.1e-09  Score=78.51  Aligned_cols=98  Identities=21%  Similarity=0.298  Sum_probs=84.5

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc-ee
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS-FD  105 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~-fD  105 (194)
                      +++++|||+|.|.-++.+|-..| +.+++.+|.........+....+.+++ |++++++.+++...+        .. ||
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~--------~~~~D  137 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE--------KKQYD  137 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc--------cccCc
Confidence            58999999999999999997776 778999999999999999999999987 899999999887443        23 99


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +|.+.+ ........+.+.+++++||.+++
T Consensus       138 ~vtsRA-va~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         138 VVTSRA-VASLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             EEEeeh-ccchHHHHHHHHHhcccCCcchh
Confidence            999876 44566778889999999998876

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=3.6e-08  Score=71.13  Aligned_cols=103  Identities=21%  Similarity=0.232  Sum_probs=80.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      .++.++|||||+|..+.+++....+...+.++|++|++.+..++-...++.  ++..++.|....+.        .++.|
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VD  112 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVD  112 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCcc
Confidence            478999999999999999999988788999999999999999998887775  57888888766554        37899


Q ss_pred             EEEEeCC------c--------------cc----cHHHHHHHHhcccCCeEEEEecc
Q 029414          106 YAFVDAD------K--------------DN----YCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       106 ~i~id~~------~--------------~~----~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +++.+.+      .              .+    ...++..+-.+|.|.|++.....
T Consensus       113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~  169 (209)
T KOG3191|consen  113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL  169 (209)
T ss_pred             EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence            9987754      0              11    22344455567889999888543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.03  E-value=1.1e-08  Score=86.52  Aligned_cols=104  Identities=18%  Similarity=0.150  Sum_probs=84.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ....+||||||.|.++..+|...| +..++++|+....+..+.+.....++. |+.++.+|+..+...+.     .+++|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~-----~~sv~  419 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLP-----NNSLD  419 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcC-----ccccc
Confidence            456899999999999999999987 899999999999999888888888876 89998888755444432     36789


Q ss_pred             EEEEeCC---c--------cccHHHHHHHHhcccCCeEEEEe
Q 029414          106 YAFVDAD---K--------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       106 ~i~id~~---~--------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .|++..+   +        --...+++.+.+.|+|||.|.+.
T Consensus       420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~  461 (506)
T PRK01544        420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA  461 (506)
T ss_pred             EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence            8887643   1        12468899999999999999884

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.03  E-value=7.3e-09  Score=80.35  Aligned_cols=107  Identities=17%  Similarity=0.107  Sum_probs=79.3

Q ss_pred             ccccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414            4 LRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   83 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~   83 (194)
                      ++.++.+++...+.+...+...++.+|||+|||+|..+..++...+   +++++|+++.+++.+++++..   .++++++
T Consensus         7 ~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~   80 (253)
T TIGR00755         7 LGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVI   80 (253)
T ss_pred             CCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEE
Confidence            4566777777777777766666788999999999999999998754   699999999999999987743   3489999


Q ss_pred             ecchHHHHHHHhhcCCCCCcee---EEEEeCCccccHHHHHHHHh
Q 029414           84 ESEALSVLDQLLKYSENEGSFD---YAFVDADKDNYCNYHERLMK  125 (194)
Q Consensus        84 ~~d~~~~~~~~~~~~~~~~~fD---~i~id~~~~~~~~~~~~~~~  125 (194)
                      .+|+.+...         ..+|   +|+.+.+.......+..+..
T Consensus        81 ~~D~~~~~~---------~~~d~~~~vvsNlPy~i~~~il~~ll~  116 (253)
T TIGR00755        81 EGDALKVDL---------PDFPKQLKVVSNLPYNISSPLIFKLLE  116 (253)
T ss_pred             ECchhcCCh---------hHcCCcceEEEcCChhhHHHHHHHHhc
Confidence            999876421         1344   67666554444455555543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=8.9e-09  Score=79.19  Aligned_cols=108  Identities=14%  Similarity=0.077  Sum_probs=83.6

Q ss_pred             ccccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414            4 LRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   83 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~   83 (194)
                      +++++..+.....-+...+...++.+|||||+|.|..|..+++..   .+|+++|+|+..++..++.+.   ..+|++++
T Consensus         8 ~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi   81 (259)
T COG0030           8 LGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVI   81 (259)
T ss_pred             cccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEE
Confidence            456777788777777777767677899999999999999999974   489999999999999998876   23599999


Q ss_pred             ecchHHH-HHHHhhcCCCCCceeEEEEeCCccccHHHHHHHH
Q 029414           84 ESEALSV-LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  124 (194)
Q Consensus        84 ~~d~~~~-~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~  124 (194)
                      ++|+... ++.+       ..++.|+.+-+..-....+..+.
T Consensus        82 ~~DaLk~d~~~l-------~~~~~vVaNlPY~Isspii~kll  116 (259)
T COG0030          82 NGDALKFDFPSL-------AQPYKVVANLPYNISSPILFKLL  116 (259)
T ss_pred             eCchhcCcchhh-------cCCCEEEEcCCCcccHHHHHHHH
Confidence            9999885 2322       16788988876544445544443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.02  E-value=7.2e-10  Score=82.63  Aligned_cols=155  Identities=16%  Similarity=0.226  Sum_probs=96.0

Q ss_pred             HHHHHHHHHcC---CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH
Q 029414           16 QLMAMLLRLVN---AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   92 (194)
Q Consensus        16 ~~l~~l~~~~~---~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~   92 (194)
                      .+|...+...+   -+++||+|||||-.+..+-...   .+++++|+|..++++|.++    ++  --++.+.++..+++
T Consensus       112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~--YD~L~~Aea~~Fl~  182 (287)
T COG4976         112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GL--YDTLYVAEAVLFLE  182 (287)
T ss_pred             HHHHHHHHhccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cc--hHHHHHHHHHHHhh
Confidence            44444444332   4699999999999988886654   4899999999999988765    21  12445566655554


Q ss_pred             HHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccccc---ccccCCCCCCCCCcccchHHHHHHH
Q 029414           93 QLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG---GTVAVPEEQVPDHFRGSSRQAILDL  166 (194)
Q Consensus        93 ~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~  166 (194)
                      ..     ..+.||+|..--.   ......++..+..+|+|||.+.|+--...   +-+..++.+.-+         -+.+
T Consensus       183 ~~-----~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH---------~~~Y  248 (287)
T COG4976         183 DL-----TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAH---------SESY  248 (287)
T ss_pred             hc-----cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhcc---------chHH
Confidence            32     3578999975322   33455667778899999999999532211   111122111100         1233


Q ss_pred             HHHhhcCCCeEEEee-----------ecCCeeEEEEEc
Q 029414          167 NRSLADDPRVQLSHV-----------ALGDGITICRRI  193 (194)
Q Consensus       167 ~~~l~~~~~~~~~~~-----------p~~~G~~i~~~~  193 (194)
                      .+......+++++-+           |+.+++.|+||+
T Consensus       249 Vr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~  286 (287)
T COG4976         249 VRALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKK  286 (287)
T ss_pred             HHHHHHhcCceEEEeecccchhhcCCCCCCceEEEecC
Confidence            333444455554433           778899999886

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.99  E-value=4.1e-09  Score=85.45  Aligned_cols=116  Identities=16%  Similarity=0.161  Sum_probs=76.0

Q ss_pred             ccccCCCCHHHHHHHHHHHHHc---CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcE
Q 029414            4 LRAMMGTAPDAGQLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI   80 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~---~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v   80 (194)
                      ...++++++...+.|...+...   .+.++||+.||.|.+++.+|...   .+|+++|+++++++.|++++..+++. |+
T Consensus       171 ~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~-n~  246 (352)
T PF05958_consen  171 PGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGID-NV  246 (352)
T ss_dssp             TTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SE
T ss_pred             CCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCC-cc
Confidence            4578899999888888776532   23489999999999999999864   49999999999999999999999987 89


Q ss_pred             EEEecchHHHHHHHhh---------cCCCCCceeEEEEeCCcccc-HHHHHHH
Q 029414           81 NFIESEALSVLDQLLK---------YSENEGSFDYAFVDADKDNY-CNYHERL  123 (194)
Q Consensus        81 ~~~~~d~~~~~~~~~~---------~~~~~~~fD~i~id~~~~~~-~~~~~~~  123 (194)
                      +++.+++.++...+..         .......+|+|++|++.... ...++.+
T Consensus       247 ~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~  299 (352)
T PF05958_consen  247 EFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI  299 (352)
T ss_dssp             EEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred             eEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence            9999888765332210         00012368999999985443 3344444

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.99  E-value=2.1e-09  Score=78.66  Aligned_cols=98  Identities=12%  Similarity=0.197  Sum_probs=73.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||.|....++...  ++.+..++|++++.+..+.++        .+.++++|..+.+..+.     +++|
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~-----d~sF   76 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFP-----DQSF   76 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCC-----CCCc
Confidence            45789999999999999998875  478999999999877665543        57799999999887763     6899


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      |.|++...   ...+...++++.+.-+ .+++-|.|.
T Consensus        77 D~VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPNF  112 (193)
T PF07021_consen   77 DYVILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPNF  112 (193)
T ss_pred             cEEehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecCh
Confidence            99998754   3345556666655543 355555553

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.98  E-value=2e-09  Score=79.78  Aligned_cols=99  Identities=19%  Similarity=0.213  Sum_probs=81.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      .+.++...++-.....-..+..|+|..||.|..++.+|...+   .|+++|++|..+..|+.|++-.|+++++++++||.
T Consensus        76 vTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~  152 (263)
T KOG2730|consen   76 VTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDF  152 (263)
T ss_pred             eccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechH
Confidence            345555566655555555788999999999999999999755   99999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCC
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      .+....+...   ...+|++|..++
T Consensus       153 ld~~~~lq~~---K~~~~~vf~spp  174 (263)
T KOG2730|consen  153 LDLASKLKAD---KIKYDCVFLSPP  174 (263)
T ss_pred             HHHHHHHhhh---hheeeeeecCCC
Confidence            9987776322   235788988765

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.97  E-value=3.3e-09  Score=84.14  Aligned_cols=118  Identities=19%  Similarity=0.222  Sum_probs=97.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-c
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-E   86 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d   86 (194)
                      -+..|..+..+..+++..++..|||--||||...+.....   +.+++++|++..+++-++.|++..+++ ...+... |
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~D  254 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLD  254 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecc
Confidence            4778999999999999999999999999999999888765   789999999999999999999999876 4545444 7


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEe
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +... + +     ....+|.|..|++.            .-+..+++.+.+.|++||.+++.
T Consensus       255 a~~l-p-l-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~  309 (347)
T COG1041         255 ATNL-P-L-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA  309 (347)
T ss_pred             cccC-C-C-----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence            7554 2 3     12469999999861            12567889999999999999995

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.96  E-value=4.1e-09  Score=81.11  Aligned_cols=100  Identities=16%  Similarity=0.208  Sum_probs=80.5

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..+.++|+|||.|.|..+..+++.+| +.+++..|. |+.++.+++       .++++++.+|..+   .+       +.
T Consensus        98 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~---~~-------P~  158 (241)
T PF00891_consen   98 FSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFD---PL-------PV  158 (241)
T ss_dssp             TTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTT---CC-------SS
T ss_pred             ccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHh---hh-------cc
Confidence            34567999999999999999999998 999999999 888888887       4599999999873   22       33


Q ss_pred             eeEEEEeCC-----ccccHHHHHHHHhcccCC--eEEEEecccccc
Q 029414          104 FDYAFVDAD-----KDNYCNYHERLMKLLKVG--GIAVYDNTLWGG  142 (194)
Q Consensus       104 fD~i~id~~-----~~~~~~~~~~~~~~L~~g--G~lv~~~~~~~g  142 (194)
                      +|++++...     .+.....++.+.+.|+||  |.|++.+...+.
T Consensus       159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~  204 (241)
T PF00891_consen  159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD  204 (241)
T ss_dssp             ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred             ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence            999998765     345677899999999999  999998887544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.95  E-value=8e-10  Score=82.96  Aligned_cols=111  Identities=12%  Similarity=0.103  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHcCCC-eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           15 GQLMAMLLRLVNAK-KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        15 ~~~l~~l~~~~~~~-~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      ..++..++...+.+ .++|+|||+|..+..+|....   +|+++|+++.+++.+++........-..++-..+..+..  
T Consensus        21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~--   95 (261)
T KOG3010|consen   21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL--   95 (261)
T ss_pred             HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCcccccccccccc--
Confidence            45677777776665 899999999988888888765   899999999999998877532211101111111111111  


Q ss_pred             HhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCe-EEEE
Q 029414           94 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVY  135 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~  135 (194)
                           ...++.|+|.+...  --+...+++.+.+.||++| +|.+
T Consensus        96 -----g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen   96 -----GGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             -----CCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence                 11478999987643  3466788999999998877 6655

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.92  E-value=8.5e-09  Score=81.13  Aligned_cols=82  Identities=12%  Similarity=0.086  Sum_probs=67.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++..++|++||.|..|..++..++++++|+++|.++++++.+++.+..   .+++++++++..++...+..   ...++
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~---~~~~v   91 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE---GLGKV   91 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc---CCCcc
Confidence            4567999999999999999999987679999999999999999998865   35899999999887554421   01379


Q ss_pred             eEEEEeCC
Q 029414          105 DYAFVDAD  112 (194)
Q Consensus       105 D~i~id~~  112 (194)
                      |.|++|..
T Consensus        92 DgIl~DLG   99 (296)
T PRK00050         92 DGILLDLG   99 (296)
T ss_pred             CEEEECCC
Confidence            99999954

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.91  E-value=1.1e-09  Score=82.30  Aligned_cols=106  Identities=20%  Similarity=0.204  Sum_probs=77.3

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCC--CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH-HHHHhhcCCCCCce
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPED--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSF  104 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~~~f  104 (194)
                      .+|||+|||.|.....+.+..+ +  -+++++|.+|.+++..+++..-..  .++.....|.... +...    .+.+++
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~-n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~----~~~~sv  145 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSP-NNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEP----PEEGSV  145 (264)
T ss_pred             hhheeeccCCCcccchhhhcCC-CCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCC----CCcCcc
Confidence            3799999999999999988776 5  789999999999999888764332  3454444444321 1111    234678


Q ss_pred             eEEEEe----C-CccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          105 DYAFVD----A-DKDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       105 D~i~id----~-~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      |.|.+-    + .+......++.+.++|||||.|++.|.-.
T Consensus       146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~  186 (264)
T KOG2361|consen  146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR  186 (264)
T ss_pred             ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence            877432    2 26678889999999999999999987543

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=1.5e-08  Score=83.69  Aligned_cols=127  Identities=15%  Similarity=0.122  Sum_probs=98.6

Q ss_pred             cccccCCCCHHHHHHHHHHHHHc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC
Q 029414            3 ILRAMMGTAPDAGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH   78 (194)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~l~~~~----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~   78 (194)
                      +..++++++-..+++|+..+...    ..+.++|+.||+|.+++.+|+..   .+|+++|++++.++.|+.+...+++. 
T Consensus       356 Sp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngis-  431 (534)
T KOG2187|consen  356 SPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGIS-  431 (534)
T ss_pred             CCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCcc-
Confidence            56789999999999999988854    45789999999999999999964   59999999999999999999999987 


Q ss_pred             cEEEEecchHHHHHHHhhcCCCCCcee-EEEEeCCcc-ccHHHHHHHHhcccCCeEEEE
Q 029414           79 KINFIESEALSVLDQLLKYSENEGSFD-YAFVDADKD-NYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        79 ~v~~~~~d~~~~~~~~~~~~~~~~~fD-~i~id~~~~-~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      |.+++.|.+++.++.+....  .+.-+ ++++|.+.. -...+++.+...-++-=++.+
T Consensus       432 Na~Fi~gqaE~~~~sl~~~~--~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyv  488 (534)
T KOG2187|consen  432 NATFIVGQAEDLFPSLLTPC--CDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYV  488 (534)
T ss_pred             ceeeeecchhhccchhcccC--CCCCceEEEECCCcccccHHHHHHHHhccCccceEEE
Confidence            99999999988887764330  12345 678887743 334555555544445544444

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=98.86  E-value=1.4e-08  Score=77.81  Aligned_cols=153  Identities=17%  Similarity=0.169  Sum_probs=92.6

Q ss_pred             cCCCCHHHHHHHHHHHHH----cCCCeEEEEcccccHHHHHHHhhC---C-CCCEEEEEeCCc-----------------
Q 029414            7 MMGTAPDAGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTI---P-EDGQITAIDVNR-----------------   61 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~~---~-~~~~v~~iD~~~-----------------   61 (194)
                      +..+......-|..++..    .-+..++|+|+..|.+++.++..+   . .+-+++++|.-.                 
T Consensus        51 ~tm~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~  130 (248)
T PF05711_consen   51 HTMIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWE  130 (248)
T ss_dssp             S-SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCT
T ss_pred             ccccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhh
Confidence            333444444555555442    246789999999999887764332   1 245688888511                 


Q ss_pred             ---------chHHhHHHHHHHcCC-CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-ccccHHHHHHHHhcccCC
Q 029414           62 ---------ETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-KDNYCNYHERLMKLLKVG  130 (194)
Q Consensus        62 ---------~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-~~~~~~~~~~~~~~L~~g  130 (194)
                               ...+..++++.+.++ +++++++.|.+.+.++...     .+++-++.+|++ .+.....++.+++.|.||
T Consensus       131 ~~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p-----~~~IAll~lD~DlYesT~~aLe~lyprl~~G  205 (248)
T PF05711_consen  131 FHEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAP-----IERIALLHLDCDLYESTKDALEFLYPRLSPG  205 (248)
T ss_dssp             CCGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-T-----T--EEEEEE---SHHHHHHHHHHHGGGEEEE
T ss_pred             hhhcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCC-----CccEEEEEEeccchHHHHHHHHHHHhhcCCC
Confidence                     023445566666665 3689999999999877642     367999999998 677888999999999999


Q ss_pred             eEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecC
Q 029414          131 GIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG  184 (194)
Q Consensus       131 G~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~  184 (194)
                      |+|+++|...+|                .++++.+|.+...    +...+.++.
T Consensus       206 GiIi~DDY~~~g----------------cr~AvdeF~~~~g----i~~~l~~id  239 (248)
T PF05711_consen  206 GIIIFDDYGHPG----------------CRKAVDEFRAEHG----ITDPLHPID  239 (248)
T ss_dssp             EEEEESSTTTHH----------------HHHHHHHHHHHTT------S--EE-S
T ss_pred             eEEEEeCCCChH----------------HHHHHHHHHHHcC----CCCccEEec
Confidence            999999976533                6677888766543    333344553

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.86  E-value=6.7e-08  Score=74.86  Aligned_cols=122  Identities=20%  Similarity=0.260  Sum_probs=96.6

Q ss_pred             HHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHH
Q 029414           17 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQ   93 (194)
Q Consensus        17 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~   93 (194)
                      .+..+....++-+||||.||.|...+......+. ..++...|.++..++..++.+++.++.+-+++.++|+.+.  +..
T Consensus       126 ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~  205 (311)
T PF12147_consen  126 AIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAA  205 (311)
T ss_pred             HHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhc
Confidence            3334444457889999999999999998888774 3689999999999999999999999997679999999874  333


Q ss_pred             HhhcCCCCCceeEEEEeCCcc---c---cHHHHHHHHhcccCCeEEEEecccccccc
Q 029414           94 LLKYSENEGSFDYAFVDADKD---N---YCNYHERLMKLLKVGGIAVYDNTLWGGTV  144 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~~---~---~~~~~~~~~~~L~~gG~lv~~~~~~~g~~  144 (194)
                      +      ...++++++.+..+   +   ....++.+...+.|||++|..+-.|+...
T Consensus       206 l------~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl  256 (311)
T PF12147_consen  206 L------DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL  256 (311)
T ss_pred             c------CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch
Confidence            2      46789999987622   2   33457778899999999999887776654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.85  E-value=3.1e-08  Score=82.42  Aligned_cols=102  Identities=14%  Similarity=0.104  Sum_probs=75.8

Q ss_pred             CCeEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           27 AKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .+.|+++|||+|-.+...+++.   ....+|+++|-++.+....++.+...++.++|+++++|..++-.        .++
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pek  258 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--------PEK  258 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS-
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--------CCc
Confidence            4679999999999887766553   11469999999999888888888888998899999999987622        368


Q ss_pred             eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .|+|+....     .+-..+.+..+.+.|||||+++=+
T Consensus       259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~  296 (448)
T PF05185_consen  259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPS  296 (448)
T ss_dssp             EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESS
T ss_pred             eeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCc
Confidence            999985522     344556778888999999988743

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.83  E-value=4.2e-08  Score=75.07  Aligned_cols=96  Identities=11%  Similarity=0.079  Sum_probs=79.3

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      +.+..-++.+..-+..-+...+++.|||+|.|+|..|..+.+.   +.+|+++|++|.++....+++......+..++++
T Consensus        37 GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~  113 (315)
T KOG0820|consen   37 GQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLH  113 (315)
T ss_pred             chhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEe
Confidence            3455556777777777777888899999999999999999986   5699999999999999999998766668999999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCC
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      ||....         +...||.++.+-+
T Consensus       114 gD~lK~---------d~P~fd~cVsNlP  132 (315)
T KOG0820|consen  114 GDFLKT---------DLPRFDGCVSNLP  132 (315)
T ss_pred             cccccC---------CCcccceeeccCC
Confidence            998764         1367999988655

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.83  E-value=1.4e-08  Score=75.65  Aligned_cols=90  Identities=14%  Similarity=0.216  Sum_probs=65.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...  ...++++|+++++++.+++.        +++++.+|+.+.++.+     ..++|
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~-----~~~sf   76 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAF-----PDKSF   76 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhccccc-----CCCCc
Confidence            356799999999999999888653  45789999999988877541        4677888876533222     14689


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccC
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKV  129 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~  129 (194)
                      |+|++...   ..+...+++++.+.+++
T Consensus        77 D~Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        77 DYVILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             CEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence            99998754   34566777777776654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.82  E-value=1.5e-08  Score=80.17  Aligned_cols=103  Identities=20%  Similarity=0.289  Sum_probs=79.4

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      +.+++.|||+|||+|-.+++-|++.  ..+|+++|-+. ..+.|++.+..+++.+.+++++|..+++  .++     .++
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP-----~eK  127 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDI--ELP-----VEK  127 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEE--ecC-----ccc
Confidence            4578999999999999999999874  47899999976 4599999999999998899999999886  221     278


Q ss_pred             eeEEEEeCC--ccccHHHHHHHH----hcccCCeEEEEe
Q 029414          104 FDYAFVDAD--KDNYCNYHERLM----KLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~--~~~~~~~~~~~~----~~L~~gG~lv~~  136 (194)
                      .|.|+....  .--+...++.++    +-|+|||+++=+
T Consensus       128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~  166 (346)
T KOG1499|consen  128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD  166 (346)
T ss_pred             eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence            999887643  111223333333    789999998654

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.79  E-value=2.6e-07  Score=70.64  Aligned_cols=133  Identities=14%  Similarity=0.072  Sum_probs=87.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      +.+++||||+|.|..|..++..+.   +|++.|.|+.+....++    .|    .+++..+  ++ .+      ...+||
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~----kg----~~vl~~~--~w-~~------~~~~fD  153 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSK----KG----FTVLDID--DW-QQ------TDFKFD  153 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHh----CC----CeEEehh--hh-hc------cCCceE
Confidence            567899999999999999999876   79999999987655443    34    3444322  22 11      146899


Q ss_pred             EEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccccccC--------CCCCCCCCcccchHHHHHHHHHHhhcCC
Q 029414          106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV--------PEEQVPDHFRGSSRQAILDLNRSLADDP  174 (194)
Q Consensus       106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~  174 (194)
                      +|-|-..   ...+...++.+.+.|+|+|.+++.-++-.-+..+        |.+..+-.-.+ ..+.+..|. .+-...
T Consensus       154 vIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~-~E~~v~~l~-~v~~p~  231 (265)
T PF05219_consen  154 VISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGAT-FEEQVSSLV-NVFEPA  231 (265)
T ss_pred             EEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCc-HHHHHHHHH-HHHHhc
Confidence            9976432   4567789999999999999999865544322211        11111222233 566677777 555566


Q ss_pred             CeEEEe
Q 029414          175 RVQLSH  180 (194)
Q Consensus       175 ~~~~~~  180 (194)
                      +|++..
T Consensus       232 GF~v~~  237 (265)
T PF05219_consen  232 GFEVER  237 (265)
T ss_pred             CCEEEE
Confidence            676543

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.79  E-value=2.5e-08  Score=69.67  Aligned_cols=111  Identities=23%  Similarity=0.356  Sum_probs=75.3

Q ss_pred             EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC------------ccccHHHH
Q 029414           53 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------------KDNYCNYH  120 (194)
Q Consensus        53 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~------------~~~~~~~~  120 (194)
                      +|+++|+.+++++.+++++++.++.++++++...-.. +.....    .+++|+++.+-.            .......+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~-l~~~i~----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al   75 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN-LDEYIP----EGPVDAAIFNLGYLPGGDKSITTKPETTLKAL   75 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG-GGGT------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH-HHhhCc----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence            6899999999999999999999988889999855444 333221    147999987622            24467889


Q ss_pred             HHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEee
Q 029414          121 ERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV  181 (194)
Q Consensus       121 ~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (194)
                      +.++++|+|||+|++  +.++|+.....          ..+++.+|.+.|. ...|.+...
T Consensus        76 ~~al~lL~~gG~i~i--v~Y~GH~gG~e----------E~~av~~~~~~L~-~~~~~V~~~  123 (140)
T PF06962_consen   76 EAALELLKPGGIITI--VVYPGHPGGKE----------ESEAVEEFLASLD-QKEFNVLKY  123 (140)
T ss_dssp             HHHHHHEEEEEEEEE--EE--STCHHHH----------HHHHHHHHHHTS--TTTEEEEEE
T ss_pred             HHHHHhhccCCEEEE--EEeCCCCCCHH----------HHHHHHHHHHhCC-cceEEEEEE
Confidence            999999999999999  67777654332          5556777766662 235666555

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.77  E-value=3.8e-08  Score=76.52  Aligned_cols=104  Identities=20%  Similarity=0.288  Sum_probs=70.5

Q ss_pred             CCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHH-HcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           27 AKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        27 ~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      |++|+=||||. -.+++.++.....+..++++|+++++.+.+++.+. ..++..+++++.+|..+...++       ..|
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~~~  193 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-------KEY  193 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----------
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-------ccC
Confidence            56999999995 56777787654447889999999999999999888 5677788999999987654343       689


Q ss_pred             eEEEEeCCcc----ccHHHHHHHHhcccCCeEEEEec
Q 029414          105 DYAFVDADKD----NYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       105 D~i~id~~~~----~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |+||+.+-..    .-...++++.+.++||+.|++..
T Consensus       194 DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  194 DVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             CEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence            9999987644    77889999999999999999974

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK04148 hypothetical protein; Provisional

Probab=98.76  E-value=9.8e-08  Score=66.30  Aligned_cols=98  Identities=12%  Similarity=0.098  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   92 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~   92 (194)
                      .+++|.......++.+++|||||+|. .+..|++.   +..|+++|+++..++.++++        .+.++.+|..+.-.
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~   72 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL   72 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH
Confidence            34455544444456889999999997 77777764   67999999999988877765        35778888776434


Q ss_pred             HHhhcCCCCCceeEEEEeCCccccHHHHHHHHhccc
Q 029414           93 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK  128 (194)
Q Consensus        93 ~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~  128 (194)
                      .+      -+.+|+|+.-.+.++....+-.+.+.+.
T Consensus        73 ~~------y~~a~liysirpp~el~~~~~~la~~~~  102 (134)
T PRK04148         73 EI------YKNAKLIYSIRPPRDLQPFILELAKKIN  102 (134)
T ss_pred             HH------HhcCCEEEEeCCCHHHHHHHHHHHHHcC
Confidence            43      3679999987776666666555555544

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.70  E-value=8.6e-08  Score=76.89  Aligned_cols=107  Identities=19%  Similarity=0.205  Sum_probs=71.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC---------CCCcEEEEecchHH-HHHHHh
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---------VDHKINFIESEALS-VLDQLL   95 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---------~~~~v~~~~~d~~~-~~~~~~   95 (194)
                      ++.+|||+|||-|....-...+  .-.+++++|++.+.++.|+++.....         ..-...++.+|... .+....
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            5679999999988755555443  25699999999999999999993311         11245677787654 222221


Q ss_pred             hcCCCCCceeEEEEeCC-------ccccHHHHHHHHhcccCCeEEEEe
Q 029414           96 KYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..  ...+||+|=|...       .+....+++.+...|+|||+++..
T Consensus       140 ~~--~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT  185 (331)
T PF03291_consen  140 PP--RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT  185 (331)
T ss_dssp             SS--TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cc--cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            11  1258999977754       344567899999999999999984

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.64  E-value=4.5e-07  Score=67.26  Aligned_cols=107  Identities=17%  Similarity=0.197  Sum_probs=84.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+||++|-|.|.....+-+.-  -.+.+.||.+|+.+.+.++.-  +.-..||.++.|..++.++.+.     ++.|
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~--p~~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~-----d~~F  170 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAP--PDEHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLP-----DKHF  170 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcC--CcceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhcccc-----ccCc
Confidence            578999999999999888886653  356667899999988776653  1112689999999999888874     5679


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      |=|+-|..   .++...+.+.+.++|||+|++-+-|.+.
T Consensus       171 DGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~  209 (271)
T KOG1709|consen  171 DGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG  209 (271)
T ss_pred             ceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence            99999976   4566777889999999999998866554

>PRK10742 putative methyltransferase; Provisional

Probab=98.61  E-value=3.9e-07  Score=69.60  Aligned_cols=88  Identities=10%  Similarity=0.179  Sum_probs=71.5

Q ss_pred             HHHHHHHHHcCCC--eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc------C--CCCcEEEEec
Q 029414           16 QLMAMLLRLVNAK--KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA------G--VDHKINFIES   85 (194)
Q Consensus        16 ~~l~~l~~~~~~~--~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~--~~~~v~~~~~   85 (194)
                      +.|...+...++.  +|||+.+|+|..+..+|..   +++|+.+|.++......+++++..      +  +..+++++++
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence            4444555455555  8999999999999999986   668999999999999999998874      2  2257999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCC
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      |+.+++...      ...||+||+|+.
T Consensus       153 da~~~L~~~------~~~fDVVYlDPM  173 (250)
T PRK10742        153 SSLTALTDI------TPRPQVVYLDPM  173 (250)
T ss_pred             cHHHHHhhC------CCCCcEEEECCC
Confidence            999998774      357999999976

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.61  E-value=9.9e-08  Score=68.95  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=60.6

Q ss_pred             EEEeCCcchHHhHHHHHHHcC--CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccC
Q 029414           55 TAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV  129 (194)
Q Consensus        55 ~~iD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~  129 (194)
                      +++|+++++++.|+++....+  ..++++++++|+.+. +.      ..++||+|++...   ..+....++++.+.|||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~------~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp   73 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PF------DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP   73 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CC------CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence            479999999999987765322  234799999998764 22      1468999988753   45778899999999999


Q ss_pred             CeEEEEeccc
Q 029414          130 GGIAVYDNTL  139 (194)
Q Consensus       130 gG~lv~~~~~  139 (194)
                      ||.+++.+..
T Consensus        74 GG~l~i~d~~   83 (160)
T PLN02232         74 GSRVSILDFN   83 (160)
T ss_pred             CeEEEEEECC
Confidence            9999987654

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.61  E-value=9.4e-08  Score=71.09  Aligned_cols=95  Identities=21%  Similarity=0.215  Sum_probs=69.8

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      +.-|||||||+|.++..+...   +...+++|+||.+++.|.+.-  .  +  -.++.+|-.+-++-      ..+.||-
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e--~--e--gdlil~DMG~Glpf------rpGtFDg  115 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERE--L--E--GDLILCDMGEGLPF------RPGTFDG  115 (270)
T ss_pred             CcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhh--h--h--cCeeeeecCCCCCC------CCCccce
Confidence            678999999999999988763   678999999999999998632  1  1  24555665554433      2588998


Q ss_pred             EEEeC--------C------ccccHHHHHHHHhcccCCeEEEEe
Q 029414          107 AFVDA--------D------KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       107 i~id~--------~------~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++.-.        .      +.....||..++..|++|+.-|+.
T Consensus       116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q  159 (270)
T KOG1541|consen  116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ  159 (270)
T ss_pred             EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence            86432        2      122356788889999999999885

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.59  E-value=6.5e-07  Score=67.12  Aligned_cols=99  Identities=18%  Similarity=0.172  Sum_probs=73.6

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 029414           30 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV  109 (194)
Q Consensus        30 vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~i  109 (194)
                      |.||||--|+...++++... ..+++++|+++.-++.|+++++..++.+++++..+|..+.++.       .+..|.|++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivI   72 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVI   72 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEE
T ss_pred             CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEE
Confidence            68999999999999999754 5689999999999999999999999999999999999887654       234899988


Q ss_pred             eCC-ccccHHHHHHHHhcccCCeEEEEe
Q 029414          110 DAD-KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       110 d~~-~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+. ..-....++.....++....+|+.
T Consensus        73 AGMGG~lI~~ILe~~~~~~~~~~~lILq  100 (205)
T PF04816_consen   73 AGMGGELIIEILEAGPEKLSSAKRLILQ  100 (205)
T ss_dssp             EEE-HHHHHHHHHHTGGGGTT--EEEEE
T ss_pred             ecCCHHHHHHHHHhhHHHhccCCeEEEe
Confidence            765 334456667666667666677775

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=98.58  E-value=7.3e-07  Score=69.09  Aligned_cols=149  Identities=17%  Similarity=0.211  Sum_probs=114.4

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc--CCC-CcEEEEecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVD-HKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~-~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ..+|+++|-||-|-|......+++ +.-+.++.+|++...++..++.+...  +.+ +++.+..||...++....     
T Consensus       119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-----  192 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-----  192 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-----
Confidence            557899999999999999988887 44678999999999999999988764  333 689999999999887763     


Q ss_pred             CCceeEEEEeCCc-------cccHHHHHHHHhcccCCeEEEEec-ccccccccCCCCCCCCCcccchHHHHHHHHHHhhc
Q 029414          101 EGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDN-TLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD  172 (194)
Q Consensus       101 ~~~fD~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  172 (194)
                      .++||+|+.|...       .....++..+.+.||+||+++... ..|--      ..        ....+++|...+-.
T Consensus       193 ~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~------~~--------~i~e~r~~~~~~f~  258 (337)
T KOG1562|consen  193 ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLH------LD--------YIKEGRSFCYVIFD  258 (337)
T ss_pred             cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHH------HH--------HHHHHHHhHHHhcC
Confidence            4789999999752       224567888899999999999843 22211      01        44557888888877


Q ss_pred             CCCeEEEeeecC----CeeEEEEE
Q 029414          173 DPRVQLSHVALG----DGITICRR  192 (194)
Q Consensus       173 ~~~~~~~~~p~~----~G~~i~~~  192 (194)
                      .-.+-.+..|..    -|+.+|.+
T Consensus       259 ~t~ya~ttvPTypsg~igf~l~s~  282 (337)
T KOG1562|consen  259 LTAYAITTVPTYPSGRIGFMLCSK  282 (337)
T ss_pred             ccceeeecCCCCccceEEEEEecc
Confidence            778888888854    46666663

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.56  E-value=3.5e-07  Score=72.15  Aligned_cols=110  Identities=12%  Similarity=0.147  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH
Q 029414           13 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   92 (194)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~   92 (194)
                      +..++|.... ..+++.|||+|||+|..+.+.|.+.  ..+|+++|.+. +.+.|++.++.+.+.+++.++.|..+++  
T Consensus       165 Y~~Ail~N~s-DF~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdi--  238 (517)
T KOG1500|consen  165 YQRAILENHS-DFQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDI--  238 (517)
T ss_pred             HHHHHHhccc-ccCCcEEEEecCCccHHHHHHHHhC--cceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccc--
Confidence            3344444333 2357899999999999998888763  46899999864 8999999999998889999999998776  


Q ss_pred             HHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEE
Q 029414           93 QLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAV  134 (194)
Q Consensus        93 ~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv  134 (194)
                      ++      .++.|+|+..+.     -+...+-+-.+.+.|+|+|...
T Consensus       239 eL------PEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  239 EL------PEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             cC------chhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence            22      368998887653     2233333445668999999875

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.56  E-value=3e-07  Score=74.36  Aligned_cols=113  Identities=19%  Similarity=0.231  Sum_probs=89.9

Q ss_pred             HHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           21 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        21 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      .+...++.+|||..+..|.=|.++|..+...|.|++.|.+...+...+.++.+.|+. +..+...|..++.....     
T Consensus       236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~-----  309 (460)
T KOG1122|consen  236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEF-----  309 (460)
T ss_pred             ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCccccccccc-----
Confidence            344556789999999999999999999987799999999999999999999999987 56666667765432221     


Q ss_pred             CCceeEEEEeCCccc-------------------------cHHHHHHHHhcccCCeEEEEeccc
Q 029414          101 EGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       101 ~~~fD~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      .++||-|++|++.+.                         ..+.+..+..++++||+||.+.+.
T Consensus       310 ~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS  373 (460)
T KOG1122|consen  310 PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS  373 (460)
T ss_pred             CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence            348999999965111                         245677888999999999998765

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.53  E-value=1.9e-07  Score=71.03  Aligned_cols=92  Identities=14%  Similarity=0.126  Sum_probs=57.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHh-HHHHHHHcCCCCcEE-EEecchHHH-HHHHhhcCCCCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI-GLPIIKKAGVDHKIN-FIESEALSV-LDQLLKYSENEG  102 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~-a~~~~~~~~~~~~v~-~~~~d~~~~-~~~~~~~~~~~~  102 (194)
                      +++++||+|||+|.++..+++. + ..+|+++|+++.++.. .+++       +++. +...|.... .....   .+..
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~~~---~d~~  142 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPADIF---PDFA  142 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhHcC---CCce
Confidence            5678999999999999999986 2 4689999999976654 2221       1322 222222211 01110   0124


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      .+|+.|+..     ...+..+.+.|++ |.+++
T Consensus       143 ~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       143 TFDVSFISL-----ISILPELDLLLNP-NDLTL  169 (228)
T ss_pred             eeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence            677777643     3357888899999 77665

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.53  E-value=1.7e-06  Score=69.04  Aligned_cols=106  Identities=20%  Similarity=0.276  Sum_probs=84.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHH--HH---cCC-CCcEEEEecchHHHHHHHhhcC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII--KK---AGV-DHKINFIESEALSVLDQLLKYS   98 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~--~~---~~~-~~~v~~~~~d~~~~~~~~~~~~   98 (194)
                      ....+||-+|.|-|--...+.+. |.-.+++-+|.+|++++.++++.  ..   ... +++++++..|+..++..-    
T Consensus       288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a----  362 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA----  362 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence            35678999999999999999875 43689999999999999998443  22   222 378999999999998875    


Q ss_pred             CCCCceeEEEEeCCcc--------ccHHHHHHHHhcccCCeEEEEec
Q 029414           99 ENEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                        .+.||+|++|-..+        .-.+++..+.+.|+++|++|++.
T Consensus       363 --~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         363 --ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             --cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence              46899999996522        23577888899999999999964

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.53  E-value=5.7e-07  Score=73.39  Aligned_cols=126  Identities=17%  Similarity=0.202  Sum_probs=89.6

Q ss_pred             ccCCCCHHHHHHH---HHHHHH--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC-c
Q 029414            6 AMMGTAPDAGQLM---AMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-K   79 (194)
Q Consensus         6 ~~~~~~~~~~~~l---~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~   79 (194)
                      |.|..+++..-++   ......  .++-++||.=+|+|.=++-.+..++...+|+.-|+++++.+.+++|++.+++.+ +
T Consensus        24 P~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~  103 (377)
T PF02005_consen   24 PVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDER  103 (377)
T ss_dssp             GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCC
T ss_pred             cchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCce
Confidence            4445555555555   222222  134589999999999999998886545799999999999999999999999986 7


Q ss_pred             EEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414           80 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        80 v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +++.+.|+...+...      ...||+|=+|+. .....+++.+.+.++.||+|.+..+
T Consensus       104 ~~v~~~DAn~ll~~~------~~~fD~IDlDPf-GSp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  104 IEVSNMDANVLLYSR------QERFDVIDLDPF-GSPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             EEEEES-HHHHHCHS------TT-EEEEEE--S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             EEEehhhHHHHhhhc------cccCCEEEeCCC-CCccHhHHHHHHHhhcCCEEEEecc
Confidence            999999998876421      478999999974 4556899999999999999998543

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.50  E-value=2e-06  Score=73.45  Aligned_cols=105  Identities=15%  Similarity=0.134  Sum_probs=71.0

Q ss_pred             cccCCCCHHHHHHHHHHHHHc------CCCeEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCcchHHhHHHHH
Q 029414            5 RAMMGTAPDAGQLMAMLLRLV------NAKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPII   71 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~------~~~~vLeiG~G~G~~~~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~   71 (194)
                      +.+++....+..++..+....      ...+|||.+||+|.+...++..++.       ...++++|+++..+..++.++
T Consensus         4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l   83 (524)
T TIGR02987         4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL   83 (524)
T ss_pred             cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence            456666666666666554321      3458999999999999988876631       257899999999999999998


Q ss_pred             HHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC
Q 029414           72 KKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        72 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      ...+. ..+.+..+|..........  ...+.||+|+.+++
T Consensus        84 ~~~~~-~~~~i~~~d~l~~~~~~~~--~~~~~fD~IIgNPP  121 (524)
T TIGR02987        84 GEFAL-LEINVINFNSLSYVLLNIE--SYLDLFDIVITNPP  121 (524)
T ss_pred             hhcCC-CCceeeecccccccccccc--cccCcccEEEeCCC
Confidence            87652 2355666665432111100  11358999998876

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.48  E-value=1.2e-06  Score=68.26  Aligned_cols=124  Identities=12%  Similarity=0.051  Sum_probs=87.9

Q ss_pred             ccccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414            4 LRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   83 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~   83 (194)
                      +++++..++.....+...+...+...|||+|+|.|..|..++...   .+++++|.++...+..++.+.   ..++++++
T Consensus         8 ~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi   81 (262)
T PF00398_consen    8 LGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVI   81 (262)
T ss_dssp             CTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEE
T ss_pred             CCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceee
Confidence            456677788888888888877788999999999999999999875   699999999999999888775   33589999


Q ss_pred             ecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhccc---CCeEEEEec
Q 029414           84 ESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK---VGGIAVYDN  137 (194)
Q Consensus        84 ~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~---~gG~lv~~~  137 (194)
                      .+|+.++-....    .......|+..-+.......+..+...-+   ...++++..
T Consensus        82 ~~D~l~~~~~~~----~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~  134 (262)
T PF00398_consen   82 NGDFLKWDLYDL----LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQK  134 (262)
T ss_dssp             ES-TTTSCGGGH----CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred             ecchhccccHHh----hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEeh
Confidence            999987521100    01345566665554444456666665333   335566643

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.48  E-value=1.4e-06  Score=65.20  Aligned_cols=106  Identities=18%  Similarity=0.155  Sum_probs=74.0

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+||-+|+.+|.....++.-..++|.|+++|.++......-...++.   +|+-.+.+|+.....-..    --+.
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~----lv~~  143 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRM----LVEM  143 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTT----TS--
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhc----cccc
Confidence            345789999999999999999999888999999999996555444333333   388888889865321111    1368


Q ss_pred             eeEEEEeCCcccc-HHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDADKDNY-CNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~~~~~-~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .|+||.|-..++. .-+...+...||+||.+++.
T Consensus       144 VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  144 VDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence            9999999875554 44556777899999998873

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.47  E-value=2.6e-06  Score=63.87  Aligned_cols=111  Identities=17%  Similarity=0.237  Sum_probs=68.3

Q ss_pred             HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHH-------HcCC-CCcEEEEecchHHH--H
Q 029414           22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-------KAGV-DHKINFIESEALSV--L   91 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-------~~~~-~~~v~~~~~d~~~~--~   91 (194)
                      +...+....+|+|||.|......|...+ -.+.+|||+.+...+.|++..+       ..+. ..++++.++|..+.  .
T Consensus        38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~  116 (205)
T PF08123_consen   38 LNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV  116 (205)
T ss_dssp             TT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred             hCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence            3455678999999999999888887654 5679999999998877764332       3343 25788899998653  2


Q ss_pred             HHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           92 DQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ..+.      ..-|+||++..  .+.....+......||+|..||.-..+
T Consensus       117 ~~~~------s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~  160 (205)
T PF08123_consen  117 KDIW------SDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF  160 (205)
T ss_dssp             HHHG------HC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred             hhhh------cCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            3331      45799999865  345556667777899999988875433

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.46  E-value=7.5e-07  Score=71.10  Aligned_cols=122  Identities=21%  Similarity=0.247  Sum_probs=81.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhC------CCCCEEEEEeCCcchHHhHHHHHHHcCCCC-cEE
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI------PEDGQITAIDVNRETYEIGLPIIKKAGVDH-KIN   81 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~   81 (194)
                      -+......++..++...+..+|+|-.||+|.+...+...+      .....++|+|+++.....++-++.-.+... +..
T Consensus        29 ~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~  108 (311)
T PF02384_consen   29 YTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN  108 (311)
T ss_dssp             ---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE
T ss_pred             ehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccc
Confidence            3456677888888877777799999999999988877643      126799999999999999998876666442 346


Q ss_pred             EEecchHHHHHHHhhcCCCCCceeEEEEeCCcc------------------------ccHHHHHHHHhcccCCeEEEE
Q 029414           82 FIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        82 ~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +..+|+.......     ....||+|+.+++..                        ....++..+.+.|++||.+++
T Consensus       109 i~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~  181 (311)
T PF02384_consen  109 IIQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI  181 (311)
T ss_dssp             EEES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccccccccccccc-----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence            8888875532110     136899999886510                        113578899999999998655

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=4.9e-06  Score=61.84  Aligned_cols=100  Identities=20%  Similarity=0.212  Sum_probs=72.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCc
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS  103 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~  103 (194)
                      ++..|+|+|+..|.++-..++.+.++++|+++|+.|-.            .-+++.++++|+.+  .+..+... ....+
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~-l~~~~  111 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEA-LGGAP  111 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHH-cCCCC
Confidence            56899999999999999999999878889999998721            12468999988754  23332211 12245


Q ss_pred             eeEEEEeCCc--------c------ccHHHHHHHHhcccCCeEEEEecc
Q 029414          104 FDYAFVDADK--------D------NYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       104 fD~i~id~~~--------~------~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +|+|..|..+        .      -....++.+...|+|||.+++-..
T Consensus       112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f  160 (205)
T COG0293         112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF  160 (205)
T ss_pred             cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence            7999999652        1      123445667789999999999754

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.44  E-value=5.7e-07  Score=65.41  Aligned_cols=101  Identities=9%  Similarity=0.099  Sum_probs=80.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ....+.|+|+|+|-.+...|..   ..+|+++|.+|.....|.+++.-.+.. |++++.+|+.+.-         -+.-|
T Consensus        32 a~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~---------fe~AD   98 (252)
T COG4076          32 AEDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYD---------FENAD   98 (252)
T ss_pred             hhhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEeccccccc---------ccccc
Confidence            3478999999999999888876   359999999999999999999777765 8999999997741         24578


Q ss_pred             EEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          106 YAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       106 ~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      .|+|..-     .+.....+..++..|+-++.|+-..+.
T Consensus        99 vvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~  137 (252)
T COG4076          99 VVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVR  137 (252)
T ss_pred             eeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHh
Confidence            8876532     345567788888999999998865543

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.40  E-value=6.4e-06  Score=65.17  Aligned_cols=83  Identities=12%  Similarity=0.098  Sum_probs=68.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++..++|..+|.|..+..++..++ +++|+++|.++++++.+++.+..+  .+++.++++++.++...+...  ...++
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~--~~~~v   93 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL--LVTKI   93 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc--CCCcc
Confidence            4567999999999999999999887 599999999999999999998765  358999999998765444221  12579


Q ss_pred             eEEEEeCC
Q 029414          105 DYAFVDAD  112 (194)
Q Consensus       105 D~i~id~~  112 (194)
                      |.|++|-.
T Consensus        94 DgIl~DLG  101 (305)
T TIGR00006        94 DGILVDLG  101 (305)
T ss_pred             cEEEEecc
Confidence            99999954

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.40  E-value=1.3e-06  Score=64.31  Aligned_cols=99  Identities=18%  Similarity=0.257  Sum_probs=62.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhc-CCCCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKY-SENEG  102 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~-~~~~~  102 (194)
                      ++.++||+||+.|.++..++....+.++|+++|+.+.           ... .++..+.+|..+  ....+... ....+
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcccccc
Confidence            3479999999999999999998744689999999875           111 355665665432  11111110 00126


Q ss_pred             ceeEEEEeCCc--------------cccHHHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADK--------------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~--------------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++|+|++|...              .-....+..+...|+|||.+|+-
T Consensus        91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K  138 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK  138 (181)
T ss_dssp             SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence            89999999830              11234455666889999988874

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.37  E-value=1.8e-06  Score=67.71  Aligned_cols=108  Identities=18%  Similarity=0.214  Sum_probs=75.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-----CcEEEEecchHHH-HHHHhhcC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-----HKINFIESEALSV-LDQLLKYS   98 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~-~~~~~~~~   98 (194)
                      .+...++++|||-|...+-.-++.  =+.++++|+....++.|+++.+...--     -.+.++.+|.... +..+... 
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~-  192 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF-  192 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC-
Confidence            356789999999998776665441  368999999999999999888754311     1367888887653 3333211 


Q ss_pred             CCCCceeEEEEeCC-------ccccHHHHHHHHhcccCCeEEEEe
Q 029414           99 ENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        99 ~~~~~fD~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                       .+++||+|=+.-.       .+...-++..+.+.|+|||++|-.
T Consensus       193 -~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT  236 (389)
T KOG1975|consen  193 -KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT  236 (389)
T ss_pred             -CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence             1345999855422       344556788899999999999873

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.36  E-value=1.7e-06  Score=61.04  Aligned_cols=57  Identities=19%  Similarity=0.283  Sum_probs=49.8

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414           29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      +++|+|||.|..+.+++...+ ..+++++|++++.++.++++++.++++ +++++....
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al   57 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAV   57 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeee
Confidence            489999999999999998875 679999999999999999999988875 577776554

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.36  E-value=6.2e-07  Score=66.80  Aligned_cols=105  Identities=23%  Similarity=0.256  Sum_probs=64.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCC--------CCEEEEEeCCcchHHhHHHHH--------------HHc-----C---
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPE--------DGQITAIDVNRETYEIGLPII--------------KKA-----G---   75 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~--------~~~v~~iD~~~~~~~~a~~~~--------------~~~-----~---   75 (194)
                      ++-+|+-.||++|.-+..+|..+.+        ..+|+++|+|+..++.|++-.              .+.     +   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            4569999999999755554433321        358999999999998876422              100     0   


Q ss_pred             -----CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEec
Q 029414           76 -----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        76 -----~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                           +-.+|++...|..+..+.       .+.||+|||...     .+.....++.+.+.|+|||+|++-.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~-------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPP-------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             eEChHHcCceEEEecccCCCCcc-------cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence                 012477777776661121       478999999865     4455788899999999999999953

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.33  E-value=2.9e-06  Score=63.04  Aligned_cols=121  Identities=14%  Similarity=0.151  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      +-.++..+....+...|-|+|||-+..+..+    +....|.++|.-+.                +-.+..+|.... |-
T Consensus        60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~----~~~~~V~SfDLva~----------------n~~Vtacdia~v-PL  118 (219)
T PF05148_consen   60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAV----PNKHKVHSFDLVAP----------------NPRVTACDIANV-PL  118 (219)
T ss_dssp             HHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S----------------STTEEES-TTS--S-
T ss_pred             HHHHHHHHHhcCCCEEEEECCCchHHHHHhc----ccCceEEEeeccCC----------------CCCEEEecCccC-cC
Confidence            3445555555555578999999998877443    33457999998541                223555666443 11


Q ss_pred             HhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 029414           94 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA  171 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  171 (194)
                            +++..|++++.-.  ..++..++++++|.|||||.+.+.++...=      .            .+++|.+.+.
T Consensus       119 ------~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf------~------------~~~~F~~~~~  174 (219)
T PF05148_consen  119 ------EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRF------E------------NVKQFIKALK  174 (219)
T ss_dssp             -------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-------S-------------HHHHHHHHH
T ss_pred             ------CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccC------c------------CHHHHHHHHH
Confidence                  1578999987654  679999999999999999999998765211      1            1788888876


Q ss_pred             cCCCeEEEe
Q 029414          172 DDPRVQLSH  180 (194)
Q Consensus       172 ~~~~~~~~~  180 (194)
                      .- +|....
T Consensus       175 ~~-GF~~~~  182 (219)
T PF05148_consen  175 KL-GFKLKS  182 (219)
T ss_dssp             CT-TEEEEE
T ss_pred             HC-CCeEEe
Confidence            43 554443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.31  E-value=1.2e-05  Score=64.32  Aligned_cols=108  Identities=11%  Similarity=0.045  Sum_probs=77.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHhHHHHHHHcCCCCcEE--EEecchHHHHHHHhhcCCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKIN--FIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~--~~~~d~~~~~~~~~~~~~~  100 (194)
                      ++..++|+|||+|.-+..+..++.+   ..+++++|+|.+.++.+.+++.....+ .++  -+.+|..+.+..+... ..
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gdy~~~l~~l~~~-~~  153 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGTYDDGLAWLKRP-EN  153 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEecHHHHHhhcccc-cc
Confidence            4558999999999988877776632   367999999999999999999844444 444  4889987765433210 00


Q ss_pred             CCceeEEEEeCC------ccccHHHHHHHHh-cccCCeEEEE
Q 029414          101 EGSFDYAFVDAD------KDNYCNYHERLMK-LLKVGGIAVY  135 (194)
Q Consensus       101 ~~~fD~i~id~~------~~~~~~~~~~~~~-~L~~gG~lv~  135 (194)
                      .....+++.-+.      ......+++.+.+ .|+||+.+++
T Consensus       154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence            123566655442      4566788899988 9999988887

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.31  E-value=5.8e-06  Score=72.91  Aligned_cols=82  Identities=13%  Similarity=0.191  Sum_probs=65.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC---CC--------------------------------------CCEEEEEeCCcchH
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI---PE--------------------------------------DGQITAIDVNRETY   64 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~---~~--------------------------------------~~~v~~iD~~~~~~   64 (194)
                      ++..++|.+||+|...+..|...   ++                                      ..+++++|+++.++
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            46789999999999998876531   11                                      23799999999999


Q ss_pred             HhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC
Q 029414           65 EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        65 ~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      +.|++|+..+++.+.+.+.++|+.+.....     ..++||+|+.+++
T Consensus       270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPP  312 (702)
T PRK11783        270 QAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPP  312 (702)
T ss_pred             HHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCC
Confidence            999999999999888999999987753221     1257999999976

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.28  E-value=7.3e-07  Score=70.09  Aligned_cols=105  Identities=22%  Similarity=0.258  Sum_probs=69.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCC-------CCCEEEEEeCCcchHHhHHHHH------------------HHc-----C
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIP-------EDGQITAIDVNRETYEIGLPII------------------KKA-----G   75 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~-------~~~~v~~iD~~~~~~~~a~~~~------------------~~~-----~   75 (194)
                      ++-+|+-.||.+|.-+..+|..+.       .+.+|+++|+|+..++.|++..                  ...     +
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            346999999999975555444331       1357999999999999887652                  110     0


Q ss_pred             -------CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414           76 -------VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        76 -------~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                             +-..|++.+.|..+.  .+    ...+.||+|+|...     .+.....++.+.+.|+|||+|++.
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~--~~----~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAK--QW----AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCC--CC----ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                   012344544444331  00    01368999998543     455678899999999999999884

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.25  E-value=2.1e-05  Score=63.62  Aligned_cols=104  Identities=17%  Similarity=0.189  Sum_probs=81.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCC---C----------------------------CC-------EEEEEeCCcchHHhH
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIP---E----------------------------DG-------QITAIDVNRETYEIG   67 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~---~----------------------------~~-------~v~~iD~~~~~~~~a   67 (194)
                      +...++|--||+|...+..|...+   |                            ..       .++|+|+++.+++.|
T Consensus       191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A  270 (381)
T COG0116         191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA  270 (381)
T ss_pred             CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence            445899999999999999877653   1                            01       478999999999999


Q ss_pred             HHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc-----------cccHHHHHHHHhcccCCeEEEEe
Q 029414           68 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~-----------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +.|...+|+.+.|++.++|+..+.+.       .+.+|+|+++++.           .-|..+.+.+.+.++-.+..++.
T Consensus       271 k~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t  343 (381)
T COG0116         271 KANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT  343 (381)
T ss_pred             HHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            99999999999999999998665332       1589999999761           12445556666788877888874

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.23  E-value=9.7e-06  Score=57.29  Aligned_cols=74  Identities=19%  Similarity=0.296  Sum_probs=56.1

Q ss_pred             HHHHHHHHHH----cCCCeEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHhHHHHHHHcC--CCCcEEEEec
Q 029414           15 GQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIES   85 (194)
Q Consensus        15 ~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~v~~~~~   85 (194)
                      .+++..+...    .+..+|+|+|||.|+.+..++..+   .++.+|+++|.++...+.+.++.+..+  ...+..+..+
T Consensus        10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   89 (141)
T PF13679_consen   10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG   89 (141)
T ss_pred             HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence            3444555444    677899999999999999999822   137899999999999999999988777  4345666665


Q ss_pred             chH
Q 029414           86 EAL   88 (194)
Q Consensus        86 d~~   88 (194)
                      +..
T Consensus        90 ~~~   92 (141)
T PF13679_consen   90 DIA   92 (141)
T ss_pred             chh
Confidence            543

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=1.9e-05  Score=63.23  Aligned_cols=124  Identities=15%  Similarity=0.178  Sum_probs=95.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      |.|..+++..-.+-.......+.+|+|.-+|+|.=++-+|...+ ..+++.-|++|++.+.+++|+..+... +..++..
T Consensus        32 P~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~  109 (380)
T COG1867          32 PAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINK  109 (380)
T ss_pred             chhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecc
Confidence            45555555544433333222288999999999999999998876 448999999999999999999988433 5666668


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      |+...+.+.      ...||+|=+|+. ..+..+++.+.+.++.||++.+..+
T Consensus       110 DAN~lm~~~------~~~fd~IDiDPF-GSPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         110 DANALLHEL------HRAFDVIDIDPF-GSPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             hHHHHHHhc------CCCccEEecCCC-CCCchHHHHHHHHhhcCCEEEEEec
Confidence            988877664      478999888864 3556789999999999999998544

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=98.23  E-value=5.2e-05  Score=55.46  Aligned_cols=126  Identities=21%  Similarity=0.204  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      +.--..+..++-..+|..|+|+|+-.|.+++++|..+-   ...+|+++|++-..++.+...     . +++.++.+++.
T Consensus        55 p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~  128 (237)
T COG3510          55 PSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSST  128 (237)
T ss_pred             HHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCC
Confidence            33344455666677899999999999999999987542   235899999876554433221     2 48999999875


Q ss_pred             HH--HHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEecccccccc
Q 029414           89 SV--LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV  144 (194)
Q Consensus        89 ~~--~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~  144 (194)
                      +.  ..+.... .+..+-=+++.|.+  .....+.++...++|..|-++++.|....++.
T Consensus       129 dpai~eqi~~~-~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp  187 (237)
T COG3510         129 DPAIAEQIRRL-KNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP  187 (237)
T ss_pred             CHHHHHHHHHH-hcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence            52  2222111 11123345556665  45667788888899999999999998877754

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.20  E-value=8.8e-06  Score=59.97  Aligned_cols=105  Identities=17%  Similarity=0.168  Sum_probs=78.7

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC------CCcEEEEecchHHHHHHHhhcCCC
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV------DHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      .-...|||||.|.....++..+| +..+.++|+-...-+..++++.....      -.|+.+...++...++.++..   
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k---  136 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK---  136 (249)
T ss_pred             cceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh---
Confidence            34689999999999999999998 89999999999888999998877651      137889999999988887543   


Q ss_pred             CCceeEEEEeCC-c----------cccHHHHHHHHhcccCCeEEEEe
Q 029414          101 EGSFDYAFVDAD-K----------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       101 ~~~fD~i~id~~-~----------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                       ++.+-.|+--+ +          -.....+.+..-.|++||.++..
T Consensus       137 -gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti  182 (249)
T KOG3115|consen  137 -GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI  182 (249)
T ss_pred             -cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence             44433332211 1          11245566677889999998874

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.17  E-value=7.1e-05  Score=56.00  Aligned_cols=111  Identities=18%  Similarity=0.184  Sum_probs=86.3

Q ss_pred             HHHHHHHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhh
Q 029414           18 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   96 (194)
Q Consensus        18 l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~   96 (194)
                      |..++... +..++.||||--++.+.++....+ ..++++.|+++..++.|.+++..+++.+++++..+|....+..   
T Consensus         7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~---   82 (226)
T COG2384           7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL---   82 (226)
T ss_pred             HHHHHHHHHcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc---
Confidence            44444433 345599999999999999999876 8899999999999999999999999999999999998665433   


Q ss_pred             cCCCCCceeEEEEeCCc-cccHHHHHHHHhcccCCeEEEEe
Q 029414           97 YSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~~-~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                          +..+|.|.+.+.. .-....+++-...|+.--.+|+.
T Consensus        83 ----~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQ  119 (226)
T COG2384          83 ----EDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQ  119 (226)
T ss_pred             ----cCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEEC
Confidence                3579999998763 33456677777777644456663

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.15  E-value=8.2e-06  Score=63.48  Aligned_cols=103  Identities=18%  Similarity=0.175  Sum_probs=67.8

Q ss_pred             CCeEEEEcccccHHHHH----HHhhCCC----CCEEEEEeCCcchHHhHHHHHHH-----cCCC----------------
Q 029414           27 AKKTIEIGVFTGYSLLL----TALTIPE----DGQITAIDVNRETYEIGLPIIKK-----AGVD----------------   77 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~----la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~-----~~~~----------------   77 (194)
                      +-+|+-.||++|.-...    +.+..+.    ..+|+++|+|...++.|+.-+=.     .+++                
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            67999999999964433    3344332    47899999999999888643211     1221                


Q ss_pred             -------CcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414           78 -------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        78 -------~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                             ..|++...|..+..+       ..+.||+|||-..     .+.....++.....|+|||+|++-
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~-------~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSP-------FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEChHHhcccEEeecCCCCCcc-------ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                   112333333222111       1467999998754     456678889999999999999994

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.10  E-value=2.5e-05  Score=62.25  Aligned_cols=97  Identities=12%  Similarity=0.127  Sum_probs=75.5

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      -...+|+|.|.|..+..+...+|   ++.+++.+...+..++.++. .    .|+.+.+|..+..          ++-|+
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~~----------P~~da  239 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQDT----------PKGDA  239 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-C----CcceecccccccC----------CCcCe
Confidence            37899999999999999998776   68889988888877777664 3    3677777765542          44579


Q ss_pred             EEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414          107 AFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus       107 i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      ||+-..     .++..+++++|++.|+|||.|++-+...+
T Consensus       240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p  279 (342)
T KOG3178|consen  240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP  279 (342)
T ss_pred             EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence            987643     45678999999999999999988666433

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.10  E-value=0.0002  Score=54.45  Aligned_cols=101  Identities=23%  Similarity=0.282  Sum_probs=63.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      .+++||-+|=.--.+ +.+|.... ..+|+.+|++...++..++..++.+++  ++.++.|....+|.-.     .++||
T Consensus        44 ~gk~il~lGDDDLtS-lA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~-----~~~fD  114 (243)
T PF01861_consen   44 EGKRILFLGDDDLTS-LALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL-----RGKFD  114 (243)
T ss_dssp             TT-EEEEES-TT-HH-HHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT-----SS-BS
T ss_pred             cCCEEEEEcCCcHHH-HHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH-----hcCCC
Confidence            578999999655443 44443333 579999999999999999999999985  9999999988777632     58999


Q ss_pred             EEEEeCC--ccccHHHHHHHHhcccCCe-EEEE
Q 029414          106 YAFVDAD--KDNYCNYHERLMKLLKVGG-IAVY  135 (194)
Q Consensus       106 ~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~  135 (194)
                      ++|.|++  .+....++..+...||..| ..++
T Consensus       115 ~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~  147 (243)
T PF01861_consen  115 VFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYF  147 (243)
T ss_dssp             EEEE---SSHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEE
Confidence            9999987  4566778889999998666 4444

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=2.6e-05  Score=55.49  Aligned_cols=119  Identities=18%  Similarity=0.163  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHH---HcCCCeEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC--CcEEEEec
Q 029414           12 PDAGQLMAMLLR---LVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIES   85 (194)
Q Consensus        12 ~~~~~~l~~l~~---~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~~~~   85 (194)
                      |..+++-..+++   ..++.+|||+|.|.-. .++.+|...+ ...|...|-+.+.++..++....+...  ..+.++.-
T Consensus        12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw   90 (201)
T KOG3201|consen   12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRW   90 (201)
T ss_pred             ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHH
Confidence            333444444443   3357899999998644 5555666554 889999999999998888766544221  12222211


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +...  .+...   +...||.|++.-.   .+...+..+.++.+|+|.|.-++-
T Consensus        91 ~~~~--aqsq~---eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~f  139 (201)
T KOG3201|consen   91 LIWG--AQSQQ---EQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLF  139 (201)
T ss_pred             HHhh--hHHHH---hhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEe
Confidence            1111  11111   1358999986432   456677889999999999986553

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=4.4e-05  Score=56.37  Aligned_cols=102  Identities=20%  Similarity=0.250  Sum_probs=76.6

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~  101 (194)
                      ..++.+||=+|+.+|.....++.-.+ .+.++++|.++......-...++.   +|+-.+.+|+...  ...+      -
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~------V  143 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHL------V  143 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhh------c
Confidence            34678999999999999999999887 899999999997665544444332   3788888887543  2222      3


Q ss_pred             CceeEEEEeCCccccHHH-HHHHHhcccCCeEEEE
Q 029414          102 GSFDYAFVDADKDNYCNY-HERLMKLLKVGGIAVY  135 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~-~~~~~~~L~~gG~lv~  135 (194)
                      +..|+||.|...++..+. ...+...|++||.+++
T Consensus       144 e~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i  178 (231)
T COG1889         144 EKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI  178 (231)
T ss_pred             ccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence            679999999886665554 4566789999996655

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.02  E-value=4.4e-05  Score=59.92  Aligned_cols=113  Identities=11%  Similarity=0.112  Sum_probs=69.0

Q ss_pred             HHHHHHHHH---HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414           15 GQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   91 (194)
Q Consensus        15 ~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   91 (194)
                      ..+|..+..   ..+|.+|||+|+|.|..+......++.-.+++++|.++.+.+.++..++......... ...+   ..
T Consensus        19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~-~~~~---~~   94 (274)
T PF09243_consen   19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAE-WRRV---LY   94 (274)
T ss_pred             HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccch-hhhh---hh
Confidence            344444443   2368899999999998777666666645689999999999999998776543211111 1111   11


Q ss_pred             HHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414           92 DQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ....    .....|+|++...     ......+++.+++.+.+ -+|+++
T Consensus        95 ~~~~----~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVE  139 (274)
T PF09243_consen   95 RDFL----PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVE  139 (274)
T ss_pred             cccc----cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEc
Confidence            1110    1234599987643     23455667777777765 344443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.02  E-value=1.4e-05  Score=62.89  Aligned_cols=80  Identities=15%  Similarity=0.304  Sum_probs=49.0

Q ss_pred             CeEEEEcccccHH-HHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc-CCCCcEEEEecchHH-HHHHHhhcCCCCCce
Q 029414           28 KKTIEIGVFTGYS-LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALS-VLDQLLKYSENEGSF  104 (194)
Q Consensus        28 ~~vLeiG~G~G~~-~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-~~~~~~~~~~~~~~f  104 (194)
                      -++||||||.... .+.-++. . +-+++++|+++..++.|+++++.+ ++.++|+++...... ++..+..   ..+.|
T Consensus       104 v~glDIGTGAscIYpLLg~~~-~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~---~~e~~  178 (299)
T PF05971_consen  104 VRGLDIGTGASCIYPLLGAKL-Y-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ---PNERF  178 (299)
T ss_dssp             -EEEEES-TTTTHHHHHHHHH-H---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S-E
T ss_pred             eEeecCCccHHHHHHHHhhhh-c-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc---cccee
Confidence            4799999987643 3333333 2 789999999999999999999999 898999997654322 3332221   24689


Q ss_pred             eEEEEeCC
Q 029414          105 DYAFVDAD  112 (194)
Q Consensus       105 D~i~id~~  112 (194)
                      |+..|.++
T Consensus       179 dftmCNPP  186 (299)
T PF05971_consen  179 DFTMCNPP  186 (299)
T ss_dssp             EEEEE---
T ss_pred             eEEecCCc
Confidence            99999876

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.00  E-value=3.8e-06  Score=69.68  Aligned_cols=98  Identities=13%  Similarity=0.074  Sum_probs=58.5

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHH-HcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      ..+||+|||.|.++.+|...   +....++-..  ....++..|. +.|++.-+.++   +..-++-.      .+.||+
T Consensus       119 R~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~--d~~~~qvqfaleRGvpa~~~~~---~s~rLPfp------~~~fDm  184 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLER---NVTTMSFAPN--DEHEAQVQFALERGVPAMIGVL---GSQRLPFP------SNAFDM  184 (506)
T ss_pred             EEEEeccceeehhHHHHhhC---CceEEEcccc--cCCchhhhhhhhcCcchhhhhh---ccccccCC------ccchhh
Confidence            47999999999999999874   3344444332  2222233332 24554332222   11222222      578999


Q ss_pred             EEEeCC----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          107 AFVDAD----KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       107 i~id~~----~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      |+|...    .....-++-++-|.|+|||+++.+...
T Consensus       185 vHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp  221 (506)
T PF03141_consen  185 VHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP  221 (506)
T ss_pred             hhcccccccchhcccceeehhhhhhccCceEEecCCc
Confidence            988754    222233566677999999999997654

; GO: 0008168 methyltransferase activity

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.00  E-value=0.00011  Score=57.53  Aligned_cols=85  Identities=14%  Similarity=0.165  Sum_probs=70.6

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..+....+|..-|.|..+..++..+++.++++++|.+|++++.|++.+..++  ++++++++++.+....+...  ..++
T Consensus        21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~--~i~~   96 (314)
T COG0275          21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL--GIGK   96 (314)
T ss_pred             cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc--CCCc
Confidence            3355799999999999999999999878899999999999999999998776  59999999987765554322  1358


Q ss_pred             eeEEEEeCC
Q 029414          104 FDYAFVDAD  112 (194)
Q Consensus       104 fD~i~id~~  112 (194)
                      +|-|++|-.
T Consensus        97 vDGiL~DLG  105 (314)
T COG0275          97 VDGILLDLG  105 (314)
T ss_pred             eeEEEEecc
Confidence            999998854

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.91  E-value=3e-05  Score=59.32  Aligned_cols=96  Identities=15%  Similarity=0.172  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414           15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      -.++..+-...+...|-|+|||-+..+.    .  ....|+++|+-+                .+-+++.+|...+ |- 
T Consensus       169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a----------------~~~~V~~cDm~~v-Pl-  224 (325)
T KOG3045|consen  169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA----------------VNERVIACDMRNV-PL-  224 (325)
T ss_pred             HHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec----------------CCCceeeccccCC-cC-
Confidence            3455555555566789999999987755    2  245799999853                1445566665553 21 


Q ss_pred             hhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           95 LKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                           ++++.|++++.-.  ..+...+++++.+.|++||.+.+..+.
T Consensus       225 -----~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~  266 (325)
T KOG3045|consen  225 -----EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK  266 (325)
T ss_pred             -----ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence                 2588998876544  678999999999999999999997764

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.86  E-value=6.5e-05  Score=59.55  Aligned_cols=85  Identities=18%  Similarity=0.165  Sum_probs=61.3

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++..++|...|.|..+..++..++ +++++++|.|+++++.+++++...  .+++.++++++.++...+... ....+
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~-~~~~~   93 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKEL-NGINK   93 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHT-TTTS-
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHc-cCCCc
Confidence            44667999999999999999999998 599999999999999999887655  469999999987765444321 12368


Q ss_pred             eeEEEEeCC
Q 029414          104 FDYAFVDAD  112 (194)
Q Consensus       104 fD~i~id~~  112 (194)
                      +|-|++|-.
T Consensus        94 ~dgiL~DLG  102 (310)
T PF01795_consen   94 VDGILFDLG  102 (310)
T ss_dssp             EEEEEEE-S
T ss_pred             cCEEEEccc
Confidence            999999965

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.85  E-value=0.00015  Score=58.10  Aligned_cols=87  Identities=11%  Similarity=0.149  Sum_probs=61.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.++||+||++|.+|..+++.   +.+|++||..+- .    ..+.  . +++|+.+.+|.....+.       .+.+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l-~----~~L~--~-~~~V~h~~~d~fr~~p~-------~~~v  271 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPM-A----QSLM--D-TGQVEHLRADGFKFRPP-------RKNV  271 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhc-C----Hhhh--C-CCCEEEEeccCcccCCC-------CCCC
Confidence            36789999999999999999986   569999996651 1    1222  1 35899999998776443       3689


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCC
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVG  130 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~g  130 (194)
                      |++++|... .+....+.+.+-|..|
T Consensus       272 DwvVcDmve-~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        272 DWLVCDMVE-KPARVAELMAQWLVNG  296 (357)
T ss_pred             CEEEEeccc-CHHHHHHHHHHHHhcC
Confidence            999999752 2234445555555544

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.81  E-value=5.2e-05  Score=55.69  Aligned_cols=97  Identities=18%  Similarity=0.183  Sum_probs=69.0

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++++|||+|+|+|..++.-++..  ...|++.|++|.....++-|.+.+++  .+.+...|...   .       ++.
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~-------~~~  142 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---S-------PPA  142 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---C-------Ccc
Confidence            4468999999999999888877763  36799999999888888888888885  57777766533   1       478


Q ss_pred             eeEEEEeCC---ccccHHHHHHHHhcccCCeEEEE
Q 029414          104 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       104 fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ||+++..-.   +......+. +...++..|..|+
T Consensus       143 ~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         143 FDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             eeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence            999987533   334444555 4444544444443

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=0.00048  Score=52.26  Aligned_cols=113  Identities=19%  Similarity=0.123  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHHH---HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-c
Q 029414           10 TAPDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-S   85 (194)
Q Consensus        10 ~~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~   85 (194)
                      +++....+...+-.   ..+++.+||+|+.||.+|..+.+..  ..+|+++|.....+..   .+   ..++++..+. .
T Consensus        60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~---kL---R~d~rV~~~E~t  131 (245)
T COG1189          60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHW---KL---RNDPRVIVLERT  131 (245)
T ss_pred             cccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCH---hH---hcCCcEEEEecC
Confidence            44444444444433   3367899999999999999999863  4699999997654432   11   1234666554 3


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      |+....+.-.     .+..|++++|...-.....+..+..++++++.++.
T Consensus       132 N~r~l~~~~~-----~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         132 NVRYLTPEDF-----TEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             ChhhCCHHHc-----ccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence            4443323221     35789999998877777888999999999988876

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.76  E-value=2.9e-05  Score=64.32  Aligned_cols=115  Identities=19%  Similarity=0.169  Sum_probs=93.7

Q ss_pred             HHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414           20 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        20 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      ...+..++-+|||.-+++|.-++..|..++.-.++++-|.++..++..+++++.++..+.++..++|+.-..-....   
T Consensus       103 ~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~---  179 (525)
T KOG1253|consen  103 LLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPM---  179 (525)
T ss_pred             hhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccc---
Confidence            34445567899999999999999999999855789999999999999999999998888888999998765433210   


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ....||+|-+|+. .....|++.+.+.++.||++.+..+
T Consensus       180 ~~~~FDvIDLDPy-Gs~s~FLDsAvqav~~gGLL~vT~T  217 (525)
T KOG1253|consen  180 VAKFFDVIDLDPY-GSPSPFLDSAVQAVRDGGLLCVTCT  217 (525)
T ss_pred             cccccceEecCCC-CCccHHHHHHHHHhhcCCEEEEEec
Confidence            1368999999974 3445789999999999999998543

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.74  E-value=0.00042  Score=61.06  Aligned_cols=104  Identities=20%  Similarity=0.126  Sum_probs=71.1

Q ss_pred             CCeEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCcchHHhH--------------HHHHHHc-----CC
Q 029414           27 AKKTIEIGVFTGYSLLLTALTI-------PE----DGQITAIDVNRETYEIG--------------LPIIKKA-----GV   76 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~-------~~----~~~v~~iD~~~~~~~~a--------------~~~~~~~-----~~   76 (194)
                      .-+|+|+|-|+|.+.+...+..       ++    .-+++++|..|-..+..              ++..+.+     ++
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            3589999999999877766444       11    24789999866332222              2222111     11


Q ss_pred             ------CC--cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc-----c-cHHHHHHHHhcccCCeEEEEe
Q 029414           77 ------DH--KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----N-YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        77 ------~~--~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~-----~-~~~~~~~~~~~L~~gG~lv~~  136 (194)
                            .+  +++++.||+.+.++++      ...+|++|.|+..+     - ..++|+.+.++++|||.++..
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~  205 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF  205 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence                  11  3457889999988876      35699999997522     1 367889999999999999864

>PHA01634 hypothetical protein

Probab=97.70  E-value=0.00012  Score=50.03  Aligned_cols=74  Identities=11%  Similarity=0.008  Sum_probs=55.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      +.++|+|||++.|.++++|+...  ..+|+++|.++...+..+++++.+..-+...-..        .+..   +-+.||
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~--------eW~~---~Y~~~D   94 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG--------EWNG---EYEDVD   94 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeecc--------cccc---cCCCcc
Confidence            67999999999999999999863  3689999999999999999887654322221111        1211   147899


Q ss_pred             EEEEeCC
Q 029414          106 YAFVDAD  112 (194)
Q Consensus       106 ~i~id~~  112 (194)
                      ...+|+.
T Consensus        95 i~~iDCe  101 (156)
T PHA01634         95 IFVMDCE  101 (156)
T ss_pred             eEEEEcc
Confidence            9999976

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.69  E-value=9.5e-05  Score=61.33  Aligned_cols=115  Identities=17%  Similarity=0.190  Sum_probs=87.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      .+..+|-+|-|.|....++-..++ ..+++++|++|++++.++.+|.-..-. +.++...|..+.+.+......+...||
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~d  372 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPD  372 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCc
Confidence            345789999999999999888887 789999999999999999999544322 566777888888777655333456899


Q ss_pred             EEEEeCCcc------------ccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          106 YAFVDADKD------------NYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       106 ~i~id~~~~------------~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      ++++|-+..            -...++..+...|.|.|+++++-+.+..
T Consensus       373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~  421 (482)
T KOG2352|consen  373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS  421 (482)
T ss_pred             EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence            999985411            1245566777899999999998665433

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.65  E-value=3.6e-05  Score=58.52  Aligned_cols=75  Identities=20%  Similarity=0.255  Sum_probs=48.8

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc---C-C----CCcEEEEecchHHHHHHHhhcCCC
Q 029414           29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---G-V----DHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~-~----~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      +|||..+|.|..+..+|..   +++|+++|.+|-.....+.-++.+   . .    ..+++++++|+.+.+...      
T Consensus        78 ~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~------  148 (234)
T PF04445_consen   78 SVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQP------  148 (234)
T ss_dssp             -EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCH------
T ss_pred             EEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhc------
Confidence            8999999999999999865   579999999997766555444322   1 1    137999999999887632      


Q ss_pred             CCceeEEEEeCC
Q 029414          101 EGSFDYAFVDAD  112 (194)
Q Consensus       101 ~~~fD~i~id~~  112 (194)
                      ..+||+||+|+.
T Consensus       149 ~~s~DVVY~DPM  160 (234)
T PF04445_consen  149 DNSFDVVYFDPM  160 (234)
T ss_dssp             SS--SEEEE--S
T ss_pred             CCCCCEEEECCC
Confidence            578999999975

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.00053  Score=55.13  Aligned_cols=118  Identities=19%  Similarity=0.219  Sum_probs=80.2

Q ss_pred             HHHcCCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHh-hc
Q 029414           22 LRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL-KY   97 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~   97 (194)
                      +...++++|||..+..|.-|+.+.+...+   .+.+++=|.++..+...+.......- +++.+...++..+-.... ..
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~  229 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG  229 (375)
T ss_pred             cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence            34557889999999999999888777642   35899999999999888888854443 355555555433211110 00


Q ss_pred             -CCCCCceeEEEEeCCc--------------c------------ccHHHHHHHHhcccCCeEEEEecccc
Q 029414           98 -SENEGSFDYAFVDADK--------------D------------NYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        98 -~~~~~~fD~i~id~~~--------------~------------~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                       +.+...||-|++|.+.              .            -....+....++||+||.+|.+.+..
T Consensus       230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence             0123589999999530              0            11345677789999999999987653

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.56  E-value=0.001  Score=46.27  Aligned_cols=105  Identities=20%  Similarity=0.211  Sum_probs=66.9

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC-CceeEEE
Q 029414           30 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE-GSFDYAF  108 (194)
Q Consensus        30 vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~-~~fD~i~  108 (194)
                      ++|+|||+|..+ .++........++++|.++.++..++..... .....+.+..++.......+     .. ..||++.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~  124 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF-----EDSASFDLVI  124 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC-----CCCCceeEEe
Confidence            999999999987 4444333124889999999988885554433 21111567776655420111     12 3799993


Q ss_pred             EeCCc--cccHHHHHHHHhcccCCeEEEEeccccc
Q 029414          109 VDADK--DNYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus       109 id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      .....  ......+..+.+.++|+|.+++......
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             eeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            33221  1146788899999999999998765543

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.51  E-value=0.0013  Score=51.03  Aligned_cols=126  Identities=10%  Similarity=0.131  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHH----cCCCeEEEEccccc--HHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414           13 DAGQLMAMLLRL----VNAKKTIEIGVFTG--YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus        13 ~~~~~l~~l~~~----~~~~~vLeiG~G~G--~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      ....+|...++.    ..-...||||||.-  .++-.+|+...++.+|+.+|.+|-.+..++..+..... .+..++++|
T Consensus        51 ~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD  129 (267)
T PF04672_consen   51 ANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQAD  129 (267)
T ss_dssp             HHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--
T ss_pred             HHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCC
Confidence            334455544443    24468999999965  36677877777799999999999999999998875542 248899999


Q ss_pred             hHHHHHHHh---hc--CCCCCceeEEEEeC-----CccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           87 ALSVLDQLL---KY--SENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        87 ~~~~~~~~~---~~--~~~~~~fD~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ..+.-.-+.   ..  -+-..+.-++++..     +..+....+..+...|.||++|++.-..
T Consensus       130 ~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t  192 (267)
T PF04672_consen  130 LRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT  192 (267)
T ss_dssp             TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred             CCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence            766422221   10  01223444444432     2356778899999999999999996543

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.49  E-value=0.00013  Score=59.24  Aligned_cols=105  Identities=18%  Similarity=0.210  Sum_probs=79.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++..++++|||.|....+++.-  ...++++++.++..+.++........+.++..++.+|.....       .++..|
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-------fedn~f  179 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-------FEDNTF  179 (364)
T ss_pred             cccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-------CCcccc
Confidence            34557999999999999999875  368899999999888888777777776655555555554431       235789


Q ss_pred             eEEEE-eCC--ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          105 DYAFV-DAD--KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       105 D~i~i-d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      |.+.+ +..  .++....++++++.++|||+.+..+.
T Consensus       180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~  216 (364)
T KOG1269|consen  180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW  216 (364)
T ss_pred             CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence            99864 332  56778899999999999999998553

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.48  E-value=0.00024  Score=52.25  Aligned_cols=108  Identities=13%  Similarity=0.102  Sum_probs=65.2

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchH------HhHHHHHHHcCCCCcEEEEecchHHHHHHHhhc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY------EIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   97 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~------~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~   97 (194)
                      +.++.+|+|+-.|.|++|..|+..+.+.+.|+++-......      ...+....+.... |++.+-.+..... .    
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~-~----  119 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALG-A----  119 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccC-C----
Confidence            34567999999999999999999998889998876544311      1111111112222 3333332221111 0    


Q ss_pred             CCCCCceeEEEEeCC----------ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414           98 SENEGSFDYAFVDAD----------KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        98 ~~~~~~fD~i~id~~----------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                         .+..|+++-...          ......+...+.+.|||||++++.|..-
T Consensus       120 ---pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a  169 (238)
T COG4798         120 ---PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRA  169 (238)
T ss_pred             ---CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence               234555543211          2334567788899999999999977543

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=97.47  E-value=0.0014  Score=49.92  Aligned_cols=102  Identities=17%  Similarity=0.191  Sum_probs=73.8

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcch----HHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRET----YEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~----~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      ..++.+||-+|+++|.+....+.-+.+.+-|+++|.++..    +..|+++       .|+-.+..|+.........   
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArhP~KYRml---  223 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARHPAKYRML---  223 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeeccCCCchheeee---
Confidence            4467899999999999999999999889999999998753    3333332       3677777777553222110   


Q ss_pred             CCCceeEEEEeCCccccHHHH-HHHHhcccCCeEEEEe
Q 029414          100 NEGSFDYAFVDADKDNYCNYH-ERLMKLLKVGGIAVYD  136 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~-~~~~~~L~~gG~lv~~  136 (194)
                       -+-.|+||.|...++....+ -.+...||+||.+++.
T Consensus       224 -VgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  224 -VGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             -eeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence             24689999998866654443 3455789999999884

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.43  E-value=0.001  Score=51.85  Aligned_cols=108  Identities=20%  Similarity=0.182  Sum_probs=70.9

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH----------------------------c----
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK----------------------------A----   74 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~----------------------------~----   74 (194)
                      ..+||--|||.|..+..+|..   +-.+.+.|.|--++-..+=.+..                            .    
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            468999999999999999986   56899999877654322211110                            0    


Q ss_pred             -------CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE----EeCCccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414           75 -------GVDHKINFIESEALSVLDQLLKYSENEGSFDYAF----VDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        75 -------~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~----id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                             ..+.++....||+.+....-    ...++||.|+    +|- .++..++++.+.++|||||+-|=-..+..+
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~----~~~~~~d~VvT~FFIDT-A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh  207 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPD----ENKGSFDVVVTCFFIDT-AENIIEYIETIEHLLKPGGYWINFGPLLYH  207 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCc----ccCCcccEEEEEEEeec-hHHHHHHHHHHHHHhccCCEEEecCCcccc
Confidence                   01134556666666653321    0136899884    443 567889999999999999965544444444

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.37  E-value=0.0079  Score=46.22  Aligned_cols=140  Identities=15%  Similarity=0.096  Sum_probs=81.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      .+.+|+|||||.--.++.+.... ++..++++|++...++.....+...+.+  .++...|.....+        ....|
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~--------~~~~D  173 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP--------KEPAD  173 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT--------TSEES
T ss_pred             CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC--------CCCcc
Confidence            47899999999887777665443 3789999999999999999999988865  4555555544322        36799


Q ss_pred             EEEEeCCc-----cccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEe
Q 029414          106 YAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSH  180 (194)
Q Consensus       106 ~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  180 (194)
                      +.++---.     ......++ +...++.. .++++...         .....+.++ +.....++.+.......+....
T Consensus       174 laLllK~lp~le~q~~g~g~~-ll~~~~~~-~~vVSfPt---------rSL~gR~~g-m~~~y~~~fe~~~~~~~~~~~~  241 (251)
T PF07091_consen  174 LALLLKTLPCLERQRRGAGLE-LLDALRSP-HVVVSFPT---------RSLGGRNKG-MEQTYSAWFEALAAERGWIVDR  241 (251)
T ss_dssp             EEEEET-HHHHHHHSTTHHHH-HHHHSCES-EEEEEEES----------------TT-HHHCHHHHHHHHCCTTCEEEEE
T ss_pred             hhhHHHHHHHHHHHhcchHHH-HHHHhCCC-eEEEeccc---------cccccCccc-cccCHHHHHHHhcccCCceeee
Confidence            99876431     11112222 22344432 33333222         112233344 5555666777777777788887


Q ss_pred             eecCCeeE
Q 029414          181 VALGDGIT  188 (194)
Q Consensus       181 ~p~~~G~~  188 (194)
                      +-+++-+.
T Consensus       242 ~~~~~Elv  249 (251)
T PF07091_consen  242 LTFGNELV  249 (251)
T ss_dssp             EEETTEEE
T ss_pred             eeccccee
Confidence            77777653

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.26  E-value=0.00026  Score=53.45  Aligned_cols=98  Identities=12%  Similarity=0.096  Sum_probs=70.5

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      -..++||||+.|.....+....  -.+++-+|.+..+++.++..- ..++  .+..+.+|- ++++ +     +.+++|+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DE-E~Ld-f-----~ens~DL  140 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDE-EFLD-F-----KENSVDL  140 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccC-CCce--EEEEEecch-hccc-c-----cccchhh
Confidence            3579999999999998886542  468999999999998776532 1111  244555663 4443 2     2579999


Q ss_pred             EEEeC---CccccHHHHHHHHhcccCCeEEEEe
Q 029414          107 AFVDA---DKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       107 i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+..-   +.-+.+..+..|...|||+|.++..
T Consensus       141 iisSlslHW~NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  141 IISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             hhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence            98653   3456667788999999999999874

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.26  E-value=0.0015  Score=47.92  Aligned_cols=103  Identities=15%  Similarity=0.226  Sum_probs=66.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHH--HHHHHhhcCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALS--VLDQLLKYSENE  101 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~--~~~~~~~~~~~~  101 (194)
                      .++.+|||+|+..|.++--.-+...+++-|.++|+-.         +.  . ++.++++.+ |..+  ....+.+. ..+
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~--p-~~Ga~~i~~~dvtdp~~~~ki~e~-lp~  134 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IE--P-PEGATIIQGNDVTDPETYRKIFEA-LPN  134 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------cc--C-CCCcccccccccCCHHHHHHHHHh-CCC
Confidence            3578999999999999998888886799999999854         11  1 234555555 3222  11111111 014


Q ss_pred             CceeEEEEeCC-------ccccHH-------HHHHHHhcccCCeEEEEecccccc
Q 029414          102 GSFDYAFVDAD-------KDNYCN-------YHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       102 ~~fD~i~id~~-------~~~~~~-------~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      .+.|+|+.|..       ..+...       ++-.+...++|+|.+++-  +|.|
T Consensus       135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g  187 (232)
T KOG4589|consen  135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG  187 (232)
T ss_pred             CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence            68999998853       112222       333345788999999995  5666

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.25  E-value=3.6e-05  Score=57.04  Aligned_cols=98  Identities=13%  Similarity=0.043  Sum_probs=67.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      .++++||+|+|.|..+..++..+.   +|++.|.|..+..+.++.    +    .+++.  ..+....       +-+||
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk----~----ynVl~--~~ew~~t-------~~k~d  171 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK----N----YNVLT--EIEWLQT-------DVKLD  171 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc----C----Cceee--ehhhhhc-------Cceee
Confidence            368999999999999999987654   788889888777765543    2    22221  1233222       34789


Q ss_pred             EEEEeCC---ccccHHHHHHHHhcccC-CeEEEEeccccccc
Q 029414          106 YAFVDAD---KDNYCNYHERLMKLLKV-GGIAVYDNTLWGGT  143 (194)
Q Consensus       106 ~i~id~~---~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~g~  143 (194)
                      +|.|-..   .-+....++.++..|+| +|.+|+.-++..-+
T Consensus       172 li~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~h  213 (288)
T KOG3987|consen  172 LILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMH  213 (288)
T ss_pred             hHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccc
Confidence            8864321   33556788999999998 89888866554433

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.21  E-value=0.00055  Score=53.03  Aligned_cols=113  Identities=18%  Similarity=0.111  Sum_probs=64.4

Q ss_pred             CCCeEEEEcccccHH-HHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc-------------------------
Q 029414           26 NAKKTIEIGVFTGYS-LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-------------------------   79 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~-~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-------------------------   79 (194)
                      ++.++||||||.-.. .+.+...   -..|+..|..+...+..++.++..+.-+.                         
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~---f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR  132 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEW---FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR  132 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGT---EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHh---hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence            456899999997543 2233333   24899999999888877777654321110                         


Q ss_pred             --EE-EEecchHHHHHHHhhcCCCCCceeEEEEeCC-------ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414           80 --IN-FIESEALSVLDQLLKYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        80 --v~-~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                        |+ ++.+|..+.-+ +.......++||+|+.-..       ...+...++.+.++|||||.|++..++...
T Consensus       133 ~~Vk~Vv~cDV~~~~p-l~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t  204 (256)
T PF01234_consen  133 RAVKQVVPCDVTQPNP-LDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST  204 (256)
T ss_dssp             HHEEEEEE--TTSSST-TTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S
T ss_pred             HhhceEEEeeccCCCC-CCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce
Confidence              21 33333322100 0000001135999876532       566788899999999999999997766543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.18  E-value=0.00083  Score=53.57  Aligned_cols=120  Identities=16%  Similarity=0.076  Sum_probs=88.5

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHH-------hHHHHHHHcCCC-C
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE-------IGLPIIKKAGVD-H   78 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~-------~a~~~~~~~~~~-~   78 (194)
                      -.+..++..-++..++...+++.|.|--.|||.....-|.-   ++.|++.|++-.++.       ..+.||++.+.. .
T Consensus       189 nTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~  265 (421)
T KOG2671|consen  189 NTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQ  265 (421)
T ss_pred             CcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcch
Confidence            34566777788888888889999999999999987777764   679999999876654       568999999865 3


Q ss_pred             cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc------------------------------------cccHHHHHH
Q 029414           79 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK------------------------------------DNYCNYHER  122 (194)
Q Consensus        79 ~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~------------------------------------~~~~~~~~~  122 (194)
                      -+.++.+|...-  .+..    ...||.|+||++.                                    .-..+.+.-
T Consensus       266 fldvl~~D~sn~--~~rs----n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~f  339 (421)
T KOG2671|consen  266 FLDVLTADFSNP--PLRS----NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCF  339 (421)
T ss_pred             hhheeeecccCc--chhh----cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHh
Confidence            456777776542  1211    3689999999640                                    001234555


Q ss_pred             HHhcccCCeEEEE
Q 029414          123 LMKLLKVGGIAVY  135 (194)
Q Consensus       123 ~~~~L~~gG~lv~  135 (194)
                      ..+.|..||.+++
T Consensus       340 ss~~L~~ggrlv~  352 (421)
T KOG2671|consen  340 SSRRLVDGGRLVF  352 (421)
T ss_pred             hHhhhhcCceEEE
Confidence            6689999999998

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.18  E-value=0.0035  Score=51.02  Aligned_cols=102  Identities=13%  Similarity=0.086  Sum_probs=69.5

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHHHHHHHhhcCCCCCc
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGS  103 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~~  103 (194)
                      ++.+|+-+|+|. |..+..+|+..+ ..+|+.+|.+++.++.|++.....    .+..... +.........    ....
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t----~g~g  238 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELT----GGRG  238 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHh----CCCC
Confidence            344899999996 777777888776 689999999999999998865211    1111111 2222222221    1236


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +|++|-...   ....++.+.+.++++|.+++-.+.
T Consensus       239 ~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         239 ADVVIEAVG---SPPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CCEEEECCC---CHHHHHHHHHHhcCCCEEEEEecc
Confidence            998886543   455788999999999999986544

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=97.08  E-value=0.067  Score=41.09  Aligned_cols=140  Identities=12%  Similarity=0.117  Sum_probs=96.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      ...........++..+-..+.+.+ |..-+|+-..+..+.+.   ..++..+|..|+-....+++|.   -..++++..+
T Consensus        69 ~a~~lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~  141 (279)
T COG2961          69 QAADLPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRG  141 (279)
T ss_pred             hcCCchHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEec
Confidence            334455566677777777766555 88888887777777764   5699999999999999999986   2358999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhccc--CCeEEEEecccccccccCCCCCCCCCcccchH
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLK--VGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR  160 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~--~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~  160 (194)
                      |....+....+.   .+.--+|+||.+   +.++....+.+.+.++  ++|+..+    |.-.      .        ..
T Consensus       142 DG~~~l~a~LPP---~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai----WYPi------k--------~r  200 (279)
T COG2961         142 DGFLALKAHLPP---KERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI----WYPI------K--------DR  200 (279)
T ss_pred             CcHHHHhhhCCC---CCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE----EEee------c--------ch
Confidence            998876554332   356789999988   3445555444443333  4566555    3211      0        33


Q ss_pred             HHHHHHHHHhhcC
Q 029414          161 QAILDLNRSLADD  173 (194)
Q Consensus       161 ~~~~~~~~~l~~~  173 (194)
                      +.++.|.+.++..
T Consensus       201 ~~~~~f~~~L~~~  213 (279)
T COG2961         201 RQIRRFLRALEAL  213 (279)
T ss_pred             HHHHHHHHHHhhc
Confidence            4588998888865

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.06  E-value=0.0009  Score=53.60  Aligned_cols=106  Identities=17%  Similarity=0.185  Sum_probs=65.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      .|++|||+|.|.|.....+-..+|.-..++.+|.+|..-+......+... +.......+|...-...+.    ....|+
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t~~td~r~s~vt~dRl~lp----~ad~yt  187 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-TEKTDWRASDVTEDRLSLP----AADLYT  187 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-cccCCCCCCccchhccCCC----ccceee
Confidence            47899999999998877776666644678888888865544443332222 2122223333333222221    124688


Q ss_pred             EEEEeC------CccccHHHHHHHHhcccCCeEEEEe
Q 029414          106 YAFVDA------DKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       106 ~i~id~------~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++++-.      ........++.+|.++.|||.||+-
T Consensus       188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv  224 (484)
T COG5459         188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV  224 (484)
T ss_pred             hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence            876542      2233445789999999999999984

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.01  E-value=0.0021  Score=53.77  Aligned_cols=130  Identities=15%  Similarity=0.213  Sum_probs=76.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      .-.+|+|..+|.|.++..|...     .|..+-.-|..-...-..+-..|+   +-+++ |-.+.++++      ...||
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydRGL---IG~yh-DWCE~fsTY------PRTYD  429 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDRGL---IGVYH-DWCEAFSTY------PRTYD  429 (506)
T ss_pred             ceeeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhccc---chhcc-chhhccCCC------Ccchh
Confidence            3458999999999999998753     244444333211111111222232   33333 444544554      57899


Q ss_pred             EEEEeCC------ccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEE
Q 029414          106 YAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS  179 (194)
Q Consensus       106 ~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (194)
                      +|+.++.      .......+-++-|.|+|+|.+++.|...                  ....++.....+    +|.+.
T Consensus       430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~------------------vl~~v~~i~~~l----rW~~~  487 (506)
T PF03141_consen  430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD------------------VLEKVKKIAKSL----RWEVR  487 (506)
T ss_pred             heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH------------------HHHHHHHHHHhC----cceEE
Confidence            9998864      2334556666779999999999976441                  444455555554    45555


Q ss_pred             eeecC------CeeEEEEE
Q 029414          180 HVALG------DGITICRR  192 (194)
Q Consensus       180 ~~p~~------~G~~i~~~  192 (194)
                      +.-..      ..+.+|+|
T Consensus       488 ~~d~e~g~~~~EkiL~~~K  506 (506)
T PF03141_consen  488 IHDTEDGPDGPEKILICQK  506 (506)
T ss_pred             EEecCCCCCCCceEEEEEC
Confidence            55433      45666664

; GO: 0008168 methyltransferase activity

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.98  E-value=0.0003  Score=54.98  Aligned_cols=114  Identities=13%  Similarity=0.032  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHcCCCeEEEEcccccHHHH-HHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           15 GQLMAMLLRLVNAKKTIEIGVFTGYSLL-LTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~-~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      .+.++.+--...+..|+|+.+|.||+|+ ++..+ + ...|+++|.+|..++..+++++.+++..+..+..+|....-+.
T Consensus       183 ~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~a-g-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~  260 (351)
T KOG1227|consen  183 KEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTA-G-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR  260 (351)
T ss_pred             HHHHHhhhcccccchhhhhhcccceEEeehhhcc-C-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc
Confidence            3444444444456889999999999999 55443 2 5789999999999999999999888777777777776443222


Q ss_pred             HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCC-e-EEEEeccc
Q 029414           94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-G-IAVYDNTL  139 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G-~lv~~~~~  139 (194)
                              ...|-|.+.--++.-.. +-.+.+.|+|. | ++-++...
T Consensus       261 --------~~AdrVnLGLlPSse~~-W~~A~k~Lk~eggsilHIHenV  299 (351)
T KOG1227|consen  261 --------LRADRVNLGLLPSSEQG-WPTAIKALKPEGGSILHIHENV  299 (351)
T ss_pred             --------ccchheeeccccccccc-hHHHHHHhhhcCCcEEEEeccc
Confidence                    45666666533322222 22334566655 4 55555433

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.031  Score=42.95  Aligned_cols=122  Identities=12%  Similarity=0.139  Sum_probs=85.1

Q ss_pred             CCHHHHHHHHH----HHHHcCCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEE
Q 029414           10 TAPDAGQLMAM----LLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINF   82 (194)
Q Consensus        10 ~~~~~~~~l~~----l~~~~~~~~vLeiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~   82 (194)
                      ..+-..+++..    ++....+...+|+|+|+-.-+..+...+.+   -.+++.+|++...+....+.+.+--..-.+.-
T Consensus        58 pTRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~  137 (321)
T COG4301          58 PTRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNA  137 (321)
T ss_pred             CchhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEee
Confidence            34445555554    444567899999999999988888777753   26899999999988766655554322224666


Q ss_pred             EecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEE
Q 029414           83 IESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        83 ~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +.+|....+..+..    .+.-=++|+...     +.....++..+...++||-++.+
T Consensus       138 l~~~~~~~La~~~~----~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll  191 (321)
T COG4301         138 LCGDYELALAELPR----GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL  191 (321)
T ss_pred             hhhhHHHHHhcccC----CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence            77888777666531    244445555532     55677889999999999988877

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.97  E-value=0.011  Score=47.11  Aligned_cols=106  Identities=15%  Similarity=0.121  Sum_probs=68.1

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ...+.+||-+|+|. |..+...|+++. ..+|+.+|.++..++.||+ +   |...-...-+.+..+.+.+.........
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~~  241 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGKK  241 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcccc
Confidence            34578999999995 778888888887 7899999999999999998 4   4331111122221222222211111123


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+|+.|-..   ....-++.+...++++|.+++..
T Consensus       242 ~~d~~~dCs---G~~~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  242 QPDVTFDCS---GAEVTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             CCCeEEEcc---CchHHHHHHHHHhccCCEEEEec
Confidence            588777433   22334667789999999977743

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.93  E-value=0.005  Score=52.34  Aligned_cols=131  Identities=21%  Similarity=0.303  Sum_probs=88.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      +.+++.++|..++...+..+|.|-.||+|......+..+..   ...+++.|.++..+..++.++--++.+..+...++|
T Consensus       170 TP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d  249 (489)
T COG0286         170 TPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD  249 (489)
T ss_pred             ChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence            45567777777777656679999999999887776666532   367999999999999999999888876445666666


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCC----------------------------ccccHHHHHHHHhcccCCe---EEEE
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDAD----------------------------KDNYCNYHERLMKLLKVGG---IAVY  135 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~----------------------------~~~~~~~~~~~~~~L~~gG---~lv~  135 (194)
                      ........  ..+..+.||+|+..++                            ......++.++...|+|||   +++.
T Consensus       250 tl~~~~~~--~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~  327 (489)
T COG0286         250 TLSNPKHD--DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP  327 (489)
T ss_pred             cccCCccc--ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence            54321110  0012367898875532                            0112677899999999976   3444


Q ss_pred             ecccccc
Q 029414          136 DNTLWGG  142 (194)
Q Consensus       136 ~~~~~~g  142 (194)
                      +.++..|
T Consensus       328 ~gvlfr~  334 (489)
T COG0286         328 DGVLFRG  334 (489)
T ss_pred             CCcCcCC
Confidence            4454443

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=0.0055  Score=43.26  Aligned_cols=115  Identities=14%  Similarity=0.108  Sum_probs=80.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      +.......|+.+ +.++..+.+|+|+|-|...+.-++..  --.-+++|.+|-.+..++-+.-+.++....+++..|...
T Consensus        57 tteQv~nVLSll-~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK  133 (199)
T KOG4058|consen   57 TTEQVENVLSLL-RGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK  133 (199)
T ss_pred             cHHHHHHHHHHc-cCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence            344444454433 34555789999999999988888764  245789999999999888888788888788888777655


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +  +       ...|..+.+-+..+-....-..+...++.|..++.-
T Consensus       134 ~--d-------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvac  171 (199)
T KOG4058|consen  134 V--D-------LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVAC  171 (199)
T ss_pred             c--c-------ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence            3  1       245666666555444444445555578888888774

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.85  E-value=0.017  Score=46.60  Aligned_cols=97  Identities=21%  Similarity=0.205  Sum_probs=67.8

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++++|+-+|.| .|..++.+|+.+  +.+|+++|.+++..+.|++.    +.+   .++.....+..+..      .+
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~l----GAd---~~i~~~~~~~~~~~------~~  228 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKL----GAD---HVINSSDSDALEAV------KE  228 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHh----CCc---EEEEcCCchhhHHh------Hh
Confidence            4467889998887 345788888875  48999999999988888765    322   33332222333443      23


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      .||+|+.-..    ...++...+.|++||.+++-...
T Consensus       229 ~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         229 IADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             hCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence            4998887553    45678888999999999986544

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=96.82  E-value=0.01  Score=45.74  Aligned_cols=115  Identities=14%  Similarity=0.163  Sum_probs=66.7

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      .+....++..+...+.... +..-.|+-..+..+.+   +..+.+.+|+.|+-.+..++++...   .++++.+.|..+.
T Consensus        43 p~~l~~yl~~v~~~n~~~~-l~~YPGSP~ia~~llR---~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~  115 (245)
T PF04378_consen   43 PPALQPYLDAVRALNPDGE-LRFYPGSPAIAARLLR---EQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEG  115 (245)
T ss_dssp             -GGGHHHHHHHHHHSSSSS---EEE-HHHHHHHHS----TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHH
T ss_pred             hHHHHHHHHHHHHhccCCC-cCcCCCCHHHHHHhCC---ccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhh
Confidence            3445667777766654433 6666666666666665   3679999999999999988888643   4899999999998


Q ss_pred             HHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhccc--CCeEEEE
Q 029414           91 LDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLK--VGGIAVY  135 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~--~gG~lv~  135 (194)
                      +..+.+.   .++--+|+||.+   +.++....+.+...++  +.|++++
T Consensus       116 l~allPP---~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~i  162 (245)
T PF04378_consen  116 LKALLPP---PERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAI  162 (245)
T ss_dssp             HHHH-S----TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred             hhhhCCC---CCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEE
Confidence            7776443   456789999987   4455555554444443  5576655

; PDB: 2OO3_A.

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=96.76  E-value=0.054  Score=38.24  Aligned_cols=102  Identities=18%  Similarity=0.230  Sum_probs=56.0

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      +.-|||+|-|+|..=-.+-+.+| +-+|+.+|..-....        .-.|+.-.++.||+.+.++.+..-   ..+.-+
T Consensus        29 ~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp--------~~~P~~~~~ilGdi~~tl~~~~~~---g~~a~l   96 (160)
T PF12692_consen   29 PGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHP--------SSTPPEEDLILGDIRETLPALARF---GAGAAL   96 (160)
T ss_dssp             -S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-G--------GG---GGGEEES-HHHHHHHHHHH----S-EEE
T ss_pred             CCceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCC--------CCCCchHheeeccHHHHhHHHHhc---CCceEE
Confidence            35799999999999888988887 899999997532211        122445678999999988773211   356677


Q ss_pred             EEEeCCccc---cHH---HH-HHHHhcccCCeEEEEecccc
Q 029414          107 AFVDADKDN---YCN---YH-ERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       107 i~id~~~~~---~~~---~~-~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ++.|-...+   -..   .+ ..+..+|.|||+++....+.
T Consensus        97 aHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~  137 (160)
T PF12692_consen   97 AHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY  137 (160)
T ss_dssp             EEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred             EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence            777754211   111   11 22347999999999976654

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.70  E-value=0.0072  Score=41.51  Aligned_cols=91  Identities=20%  Similarity=0.258  Sum_probs=61.2

Q ss_pred             cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccc
Q 029414           36 FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN  115 (194)
Q Consensus        36 G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~  115 (194)
                      |.|..++.+|+...  .+|+++|.+++..+.+++    .|...-+.....|..+.+..+..    ...+|+++-...   
T Consensus         1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~~----~~~~d~vid~~g---   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELTG----GRGVDVVIDCVG---   67 (130)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHTT----TSSEEEEEESSS---
T ss_pred             ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hcccccccccccccccccccccc----cccceEEEEecC---
Confidence            46888999999864  899999999988877765    34221111122334444444421    247998875432   


Q ss_pred             cHHHHHHHHhcccCCeEEEEeccc
Q 029414          116 YCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       116 ~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ....++.+++.++++|.+++-...
T Consensus        68 ~~~~~~~~~~~l~~~G~~v~vg~~   91 (130)
T PF00107_consen   68 SGDTLQEAIKLLRPGGRIVVVGVY   91 (130)
T ss_dssp             SHHHHHHHHHHEEEEEEEEEESST
T ss_pred             cHHHHHHHHHHhccCCEEEEEEcc
Confidence            246788899999999999996544

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.63  E-value=0.0027  Score=48.08  Aligned_cols=84  Identities=10%  Similarity=0.248  Sum_probs=58.5

Q ss_pred             CeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHc-CCCCcEEEEe-cchHHHHHHHhhcCCCCCce
Q 029414           28 KKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIE-SEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~f  104 (194)
                      -++||||+|  .+.++=...+ ..+-+.++.|+++..++.|+..+..+ ++...+++.. .|...+++.....   .+.|
T Consensus        80 i~~LDIGvG--AnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~---nE~y  154 (292)
T COG3129          80 IRILDIGVG--ANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGK---NERY  154 (292)
T ss_pred             eEEEeeccC--cccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccc---ccee
Confidence            378999885  4555533222 23678999999999999999999887 6666677644 4555555554221   5789


Q ss_pred             eEEEEeCCcccc
Q 029414          105 DYAFVDADKDNY  116 (194)
Q Consensus       105 D~i~id~~~~~~  116 (194)
                      |+..|+++..+.
T Consensus       155 d~tlCNPPFh~s  166 (292)
T COG3129         155 DATLCNPPFHDS  166 (292)
T ss_pred             eeEecCCCcchh
Confidence            999999874443

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.57  E-value=0.0038  Score=46.90  Aligned_cols=98  Identities=16%  Similarity=0.148  Sum_probs=61.3

Q ss_pred             CCHHHHHHHHHHHHHcC----CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414           10 TAPDAGQLMAMLLRLVN----AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~----~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      ++.-..++|.......+    .-++|||||=+..+...-..    --.|+.||+++.                .-.+.+.
T Consensus        31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~----~fdvt~IDLns~----------------~~~I~qq   90 (219)
T PF11968_consen   31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG----WFDVTRIDLNSQ----------------HPGILQQ   90 (219)
T ss_pred             hhHHHHHHhhhhccccccccccceEEeecccCCCCcccccC----ceeeEEeecCCC----------------CCCceee
Confidence            34444455554443322    24899999976655444322    235999999862                2345556


Q ss_pred             chHHH-HHHHhhcCCCCCceeEEEEeCC------ccccHHHHHHHHhcccCCeE
Q 029414           86 EALSV-LDQLLKYSENEGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGI  132 (194)
Q Consensus        86 d~~~~-~~~~~~~~~~~~~fD~i~id~~------~~~~~~~~~~~~~~L~~gG~  132 (194)
                      |+.+. ++.     .+.++||+|.+.-.      ....-..++.+.+.|+|+|.
T Consensus        91 DFm~rplp~-----~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen   91 DFMERPLPK-----NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             ccccCCCCC-----CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence            66553 222     13578999976632      44566788999999999999

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.56  E-value=0.0055  Score=50.61  Aligned_cols=59  Identities=24%  Similarity=0.351  Sum_probs=51.8

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      .|||||+|+|..+...+++.  ...++++|.-..+.+.|++-...+|..++++++...+.+
T Consensus        69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte  127 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE  127 (636)
T ss_pred             EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence            58999999999998888875  357999999999999999999999999999988766544

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.41  E-value=0.043  Score=45.15  Aligned_cols=106  Identities=17%  Similarity=0.176  Sum_probs=67.7

Q ss_pred             HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc-hHHHHHHHhhcCCC
Q 029414           23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSEN  100 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~~  100 (194)
                      +..++.+||..|+|. |..+..+|+..+ ..++++++.+++..+.+++..   +. ..+.....+ ..+.+..+.    .
T Consensus       181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~----~  251 (386)
T cd08283         181 EVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT----G  251 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc----C
Confidence            344677999999987 888888998864 346999999998888777653   21 122222221 223233321    1


Q ss_pred             CCceeEEEEeCCc------------------cccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADK------------------DNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~------------------~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ...+|+++-....                  .+....++.+++.++++|.++.-.
T Consensus       252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            2469977643211                  123456788899999999998753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.33  E-value=0.016  Score=43.89  Aligned_cols=97  Identities=14%  Similarity=0.168  Sum_probs=63.2

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCC----C----CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhh
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPE----D----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLK   96 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~----~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~   96 (194)
                      -++++|+.+..|.++-.+++.+-+    .    .+++++|+.+-           ... +.|.-+++|...  .+..+..
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI-~GV~qlq~DIT~~stae~Ii~  109 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------API-EGVIQLQGDITSASTAEAIIE  109 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------Ccc-CceEEeecccCCHhHHHHHHH
Confidence            478999999999999998877632    1    13999999751           122 356666777432  1222111


Q ss_pred             cCCCCCceeEEEEeCCc-----cc---------cHHHHHHHHhcccCCeEEEEe
Q 029414           97 YSENEGSFDYAFVDADK-----DN---------YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~~-----~~---------~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      . ...++-|+|++|+.+     ++         ..+.+.-....|+|||.+|.-
T Consensus       110 h-fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen  110 H-FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             H-hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence            1 134689999999862     12         234455556899999999874

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=96.27  E-value=0.014  Score=40.16  Aligned_cols=52  Identities=25%  Similarity=0.324  Sum_probs=39.4

Q ss_pred             cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--c----cHHHHHHHHhcccCCeEEEEe
Q 029414           79 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--N----YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        79 ~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~----~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++++..||+.+.++++      ...||++|.|+..+  +    ..++++.+.++++|||++...
T Consensus        32 ~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty   89 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATY   89 (124)
T ss_dssp             EEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES
T ss_pred             EEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEe
Confidence            4678899999998887      47899999997521  1    367899999999999999985

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.20  E-value=0.048  Score=44.03  Aligned_cols=97  Identities=18%  Similarity=0.248  Sum_probs=58.4

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ++++||-.|+|. |..+..+|+... ..+|+++|.+++.++.+++    .|...-+.....+..+....       .+.+
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~-------~g~~  236 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAE-------KGYF  236 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhcc-------CCCC
Confidence            467899888752 456666777653 3479999999988887765    24321111111122121111       2459


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |+||-....   ...++.+.+.+++||.++.-.
T Consensus       237 D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        237 DVSFEVSGH---PSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             CEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence            987743222   245677889999999999854

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=96.01  E-value=0.026  Score=45.87  Aligned_cols=53  Identities=13%  Similarity=0.178  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHH
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGL   68 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~   68 (194)
                      ..+++..+......+.++|+|+|.|+.+..++..+  +..|.+||.+....+.|+
T Consensus       141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~  193 (476)
T KOG2651|consen  141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQ  193 (476)
T ss_pred             HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHH
Confidence            34566667777788999999999999999999875  689999999987666554

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.94  E-value=0.032  Score=37.54  Aligned_cols=89  Identities=19%  Similarity=0.082  Sum_probs=60.1

Q ss_pred             ccccHHHHHHHhhCCCCC-EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCceeEEEEeC
Q 029414           35 VFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDA  111 (194)
Q Consensus        35 ~G~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~fD~i~id~  111 (194)
                      ||.|..+..+++.+..++ .++.+|.+++..+.+++.        .+.++.||+.+  .+...     .-.+.|.+++..
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a-----~i~~a~~vv~~~   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERA-----GIEKADAVVILT   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHT-----TGGCESEEEEES
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhc-----CccccCEEEEcc
Confidence            456788888877775555 899999999887766643        36788898865  34443     135789999876


Q ss_pred             CccccHHHHHHHHhcccCCeEEEEe
Q 029414          112 DKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       112 ~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ......-......+.+.|...+++.
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   71 DDDEENLLIALLARELNPDIRIIAR   95 (116)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence            5444444444555777788888774

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK11524 putative methyltransferase; Provisional

Probab=95.86  E-value=0.022  Score=44.99  Aligned_cols=53  Identities=21%  Similarity=0.339  Sum_probs=41.0

Q ss_pred             cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc------c---------c----HHHHHHHHhcccCCeEEEEe
Q 029414           79 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------N---------Y----CNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        79 ~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~------~---------~----~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +.+++++|+.+.+..+.     .++||+|++|++..      .         +    ..+++.+.++|+|||.+++.
T Consensus         8 ~~~i~~gD~~~~l~~l~-----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTELKKIP-----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHHHHhcc-----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            56899999999876652     47899999997621      0         1    35778889999999999874

>PRK13699 putative methylase; Provisional

Probab=95.86  E-value=0.018  Score=44.00  Aligned_cols=51  Identities=16%  Similarity=0.264  Sum_probs=39.9

Q ss_pred             EEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc------------------ccHHHHHHHHhcccCCeEEEE
Q 029414           80 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------NYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        80 v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~------------------~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      .+++.+|+.+.+..+.     ++++|+|+.|++..                  -....++++.+.|||||.+++
T Consensus         2 ~~l~~gD~le~l~~lp-----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          2 SRFILGNCIDVMARFP-----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             CeEEechHHHHHHhCC-----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            3688999999988863     67999999997521                  013567888899999999876

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.82  E-value=0.047  Score=42.13  Aligned_cols=101  Identities=18%  Similarity=0.169  Sum_probs=60.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHH-----HHcCCCCcEE---EEecchHHHHHHHhhc
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII-----KKAGVDHKIN---FIESEALSVLDQLLKY   97 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-----~~~~~~~~v~---~~~~d~~~~~~~~~~~   97 (194)
                      ++.+|||+|+|+|..++.+|...  ...++..|... .....+.+.     +..++...+.   +..+++......    
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~----  158 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR----  158 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc----
Confidence            45679999999998888888764  56788877743 333333332     2122211232   233444333222    


Q ss_pred             CCCCCc-eeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414           98 SENEGS-FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        98 ~~~~~~-fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                         .+. +|+|+..-.   .+........+..+|..++.+.+.
T Consensus       159 ---~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~  198 (248)
T KOG2793|consen  159 ---LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA  198 (248)
T ss_pred             ---cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence               233 899986533   455666777777888888855554

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.80  E-value=0.38  Score=41.23  Aligned_cols=106  Identities=18%  Similarity=0.126  Sum_probs=66.2

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE--e-------------cchH
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--E-------------SEAL   88 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~--~-------------~d~~   88 (194)
                      .++.+|+-+|+|. |..++..|+.+.  .+|+++|.+++.++.+++.    |.. .+.+-  .             .+..
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aesl----GA~-~v~i~~~e~~~~~~gya~~~s~~~~  235 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESM----GAE-FLELDFEEEGGSGDGYAKVMSEEFI  235 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----CCe-EEEeccccccccccchhhhcchhHH
Confidence            3588999999996 667888888764  5899999999988877762    321 11110  0             0111


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCcc---ccHHHHHHHHhcccCCeEEEEeccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKD---NYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~---~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +.......+  ....+|+++-....+   ....+.+.+.+.+||||+|+.-.+.
T Consensus       236 ~~~~~~~~~--~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~  287 (509)
T PRK09424        236 KAEMALFAE--QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAE  287 (509)
T ss_pred             HHHHHHHHh--ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccC
Confidence            111111000  124699888665432   2333359999999999999875543

>PRK11524 putative methyltransferase; Provisional

Probab=95.68  E-value=0.055  Score=42.74  Aligned_cols=56  Identities=11%  Similarity=0.094  Sum_probs=45.6

Q ss_pred             HHHHHHHHHH--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH
Q 029414           15 GQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK   73 (194)
Q Consensus        15 ~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~   73 (194)
                      .+++..++..  .++..|||..+|+|..++...+.   +-+.+++|++++..+.|++++..
T Consensus       195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence            5666666654  46789999999999887766654   56899999999999999999864

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.62  E-value=0.19  Score=40.05  Aligned_cols=99  Identities=21%  Similarity=0.243  Sum_probs=60.9

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++.+||..|+| .|..+..+|+..  +.++++++.+++..+.+++    .+...-+.....+..+.+ ...    ..+
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~----~~~  231 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG----LGG  231 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh----cCC
Confidence            4456788888876 477788888874  5679999998887776643    343211111111222222 211    135


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+|+++-...   ....++.+++.|+++|.++.-
T Consensus       232 ~~D~vid~~g---~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         232 GFDVIFDFVG---TQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             CceEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence            7997663221   134677889999999999874

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.53  E-value=0.19  Score=40.10  Aligned_cols=95  Identities=14%  Similarity=0.158  Sum_probs=68.3

Q ss_pred             CCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           27 AKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        27 ~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      +.+|.-+|.|. |..+..+|..+  ++.|+.+|.|.+.+......|     ..++..+..+...+-..+       .+.|
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v-------~~aD  233 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV-------KKAD  233 (371)
T ss_pred             CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh-------hhcc
Confidence            45677777774 78888888875  589999999998888777665     246777777776655544       5678


Q ss_pred             EEEEe---CCccccHHHHHHHHhcccCCeEEEE
Q 029414          106 YAFVD---ADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       106 ~i~id---~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +++-.   .....+.-..++..+.+|||++|+=
T Consensus       234 lvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD  266 (371)
T COG0686         234 LVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD  266 (371)
T ss_pred             EEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence            77532   2234455567888899999999874

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=95.46  E-value=0.0091  Score=46.60  Aligned_cols=104  Identities=22%  Similarity=0.192  Sum_probs=68.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      ..|.+.+++...   ..+..++|+|||.|-.+.     ..+...+++.|.+...+..+++.    +   ...+..+|+..
T Consensus        32 ~Wp~v~qfl~~~---~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~   96 (293)
T KOG1331|consen   32 PWPMVRQFLDSQ---PTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALK   96 (293)
T ss_pred             ccHHHHHHHhcc---CCcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC----C---Cceeehhhhhc
Confidence            344455554432   346789999999986522     11367899999998777766642    1   11455566655


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCC------ccccHHHHHHHHhcccCCeEEEE
Q 029414           90 VLDQLLKYSENEGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ....       ..+||.++.-+.      .......++++.+.++|||-..+
T Consensus        97 ~p~~-------~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen   97 LPFR-------EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             CCCC-------CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            4322       578998875543      33456778999999999998666

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=95.42  E-value=0.63  Score=33.63  Aligned_cols=110  Identities=19%  Similarity=0.234  Sum_probs=63.0

Q ss_pred             CHHHHHHHHHHHHH--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           11 APDAGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        11 ~~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      +..+...|...+..  ....+|+-|||=+-+..+.-  ...++.++...|.|.        +++..+-+ ...++-.+..
T Consensus         8 s~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~--------RF~~~~~~-~F~fyD~~~p   76 (162)
T PF10237_consen    8 SDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDR--------RFEQFGGD-EFVFYDYNEP   76 (162)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecc--------hHHhcCCc-ceEECCCCCh
Confidence            44455555554444  34578999998554443333  222367899999986        34443321 2444444444


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCc--cccH-HHHHHHHhcccCCeEEEEe
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADK--DNYC-NYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~--~~~~-~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..++...     .++||+|++|++.  +... .....+..++++++.|++.
T Consensus        77 ~~~~~~l-----~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~  122 (162)
T PF10237_consen   77 EELPEEL-----KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC  122 (162)
T ss_pred             hhhhhhc-----CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence            3333321     4799999999883  2333 3334444556787888874

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.41  E-value=0.036  Score=46.94  Aligned_cols=117  Identities=15%  Similarity=0.107  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHcC------CCeEEEEcccccHHHHH---HHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEE
Q 029414           12 PDAGQLMAMLLRLVN------AKKTIEIGVFTGYSLLL---TALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF   82 (194)
Q Consensus        12 ~~~~~~l~~l~~~~~------~~~vLeiG~G~G~~~~~---la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~   82 (194)
                      .+..+++..|....+      ...|+-+|+|.|-....   .|+......+++++|-+|.++-..+. .......++|++
T Consensus       347 ~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vti  425 (649)
T KOG0822|consen  347 QYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTI  425 (649)
T ss_pred             HHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEE
Confidence            345556666665432      34688899999964433   34444446789999999998876654 222233568999


Q ss_pred             EecchHHHHHHHhhcCCCCCceeEEEEe-----CCccccHHHHHHHHhcccCCeEEEEe
Q 029414           83 IESEALSVLDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        83 ~~~d~~~~~~~~~~~~~~~~~fD~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +.+|-.++-+.       .++.|+++..     ++-+--.+-++.+.+.|||+|+-|=.
T Consensus       426 i~~DMR~w~ap-------~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~  477 (649)
T KOG0822|consen  426 ISSDMRKWNAP-------REQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPS  477 (649)
T ss_pred             EeccccccCCc-------hhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence            99987665321       2678887532     22344467788899999999876643

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.39  E-value=0.049  Score=40.91  Aligned_cols=52  Identities=13%  Similarity=0.144  Sum_probs=37.5

Q ss_pred             HHHHHHHHH--HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHH
Q 029414           15 GQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP   69 (194)
Q Consensus        15 ~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~   69 (194)
                      .+++..++.  ..++..|||..+|+|..+....+.   +-+.+++|++++..+.|++
T Consensus       178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence            445555554  346789999999999887776665   5589999999999998875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK13699 putative methylase; Provisional

Probab=95.38  E-value=0.096  Score=40.02  Aligned_cols=58  Identities=7%  Similarity=0.003  Sum_probs=44.9

Q ss_pred             HHHHHHHHH--HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC
Q 029414           15 GQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG   75 (194)
Q Consensus        15 ~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   75 (194)
                      .+++..++.  ..++..|||.-||+|..+....+.   +-+.+++|++++..+.+++++....
T Consensus       150 ~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~~  209 (227)
T PRK13699        150 VTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAVQ  209 (227)
T ss_pred             HHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHH
Confidence            345555543  346789999999999887776654   5689999999999999999886543

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=95.38  E-value=0.22  Score=40.69  Aligned_cols=102  Identities=23%  Similarity=0.328  Sum_probs=59.6

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++++||-.|+|. |..+..+|+... ..+|+++|.+++..+.+++    .+...-+.....+..+.+..+.     .+
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~~  258 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----GG  258 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----CC
Confidence            34567888888753 445566676643 2369999999988877754    3432111111122222222221     23


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .+|+++- ...  ....+..+++.++++|.++.-..
T Consensus       259 g~d~vid-~~G--~~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         259 GVDYAFE-MAG--SVPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CCCEEEE-CCC--ChHHHHHHHHHHhcCCEEEEEcc
Confidence            6897763 321  23456778899999999987543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.34  E-value=0.21  Score=40.32  Aligned_cols=94  Identities=13%  Similarity=0.097  Sum_probs=56.7

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .++++||-+|+|. |..+..+|+......+++++|.+++.++.+++    .+.   ....  +  +. ..       ...
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~--~--~~-~~-------~~g  222 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI--D--DI-PE-------DLA  222 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh--h--hh-hh-------ccC
Confidence            4578999999753 33444556542114689999999888877764    221   1111  1  11 11       135


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +|+|+=..........++.+.+.++++|.+++-.
T Consensus       223 ~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         223 VDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             CcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence            8977632222223456788899999999998754

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=95.31  E-value=0.26  Score=40.06  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=60.9

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++++||-.|+|. |..++.+|+... ..+|+++|.+++..+.+++    .+...-+.....+..+.+....    ...
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~~  244 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----GGF  244 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----CCC
Confidence            34578899988743 445666777643 2369999999888777754    3432112222223333333321    123


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .+|+++ |....  ...+..+++.+++||.+++-..
T Consensus       245 g~d~vi-d~~g~--~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       245 GADVVI-DAVGR--PETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCCEEE-ECCCC--HHHHHHHHHHhccCCEEEEECC
Confidence            689776 43221  2356778899999999987543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=95.24  E-value=0.42  Score=38.74  Aligned_cols=100  Identities=12%  Similarity=0.074  Sum_probs=62.6

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~  100 (194)
                      ..++.+||-.|+  +.|..+..+|+..  +.++++++.+++..+.+++.   .|...-+..... +..+.+....     
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~-----  225 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYF-----  225 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHC-----
Confidence            446788999987  4677888888875  56899998888766655433   343311221111 3333333321     


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+.+|+++ |...   ...+..+++.++++|.++.-.
T Consensus       226 ~~gvD~v~-d~vG---~~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        226 PEGIDIYF-DNVG---GDMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             CCCcEEEE-ECCC---HHHHHHHHHHhccCCEEEEEC
Confidence            24689777 4432   245678889999999998754

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=95.15  E-value=0.46  Score=37.74  Aligned_cols=100  Identities=11%  Similarity=0.050  Sum_probs=62.3

Q ss_pred             HHHcCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414           22 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        22 ~~~~~~~~vLeiG--~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      ....++.+||-.|  .+.|..++.+|+..  +.++++++.+++..+.+++    .+...-+.....+..+.+....    
T Consensus       139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~----  208 (329)
T cd08294         139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAA----  208 (329)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHC----
Confidence            3345677888887  45677778888875  5689999888877766654    3542112212223333333321    


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                       .+.+|+++ |....   ..++.+++.|+++|.++.-
T Consensus       209 -~~gvd~vl-d~~g~---~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         209 -PDGIDCYF-DNVGG---EFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             -CCCcEEEE-ECCCH---HHHHHHHHhhccCCEEEEE
Confidence             24699777 43222   4567888999999999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08293 PTGR2 Prostaglandin reductase

Probab=95.08  E-value=0.45  Score=38.16  Aligned_cols=95  Identities=14%  Similarity=0.135  Sum_probs=59.0

Q ss_pred             CeEEEEcc--cccHHHHHHHhhCCCCC-EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           28 KKTIEIGV--FTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        28 ~~vLeiG~--G~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .+||-.|+  |.|..+..+|+..  +. ++++++.+++..+.+++.   .|...-+.....+..+.+..+.     .+.+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-----~~gv  225 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-----PEGV  225 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-----CCCc
Confidence            78988885  5677888888875  45 799998888766665553   3543111211223333333331     2469


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+++ |....   ..+..+++.|+++|.++.-
T Consensus       226 d~vi-d~~g~---~~~~~~~~~l~~~G~iv~~  253 (345)
T cd08293         226 DVYF-DNVGG---EISDTVISQMNENSHIILC  253 (345)
T ss_pred             eEEE-ECCCc---HHHHHHHHHhccCCEEEEE
Confidence            9887 44322   2357788999999999863

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=95.06  E-value=1.1  Score=35.09  Aligned_cols=110  Identities=8%  Similarity=0.045  Sum_probs=62.0

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC--CCcEEEEecchHHHH-HHHhhcCCCCCc
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALSVL-DQLLKYSENEGS  103 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~-~~~~~~~~~~~~  103 (194)
                      ...|+.+|||.  .|..+-...+.+.+++-+|. |+.++.=++.+.+.+.  +.+.+++..|..+.+ ..+.........
T Consensus        82 ~~qvV~LGaGl--DTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~  158 (260)
T TIGR00027        82 IRQVVILGAGL--DTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA  158 (260)
T ss_pred             CcEEEEeCCcc--ccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence            56799999955  44444333232344544444 4455555555665442  357888888876422 333211011123


Q ss_pred             eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      .-++++.+.     .+.....++.+.+...||+.|+++-+.
T Consensus       159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            344554443     445667788887888899999997543

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=95.00  E-value=0.059  Score=38.38  Aligned_cols=43  Identities=16%  Similarity=0.179  Sum_probs=28.8

Q ss_pred             EEccccc--HHHHHHH-hhCCCCCEEEEEeCCcchHHhHHHH--HHHc
Q 029414           32 EIGVFTG--YSLLLTA-LTIPEDGQITAIDVNRETYEIGLPI--IKKA   74 (194)
Q Consensus        32 eiG~G~G--~~~~~la-~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~   74 (194)
                      |||++.|  .++.+++ +...++++++++|++|..++..+++  +..+
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            7999999  7766664 2344489999999999999999988  5544

; PDB: 2PY6_A.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=94.96  E-value=0.76  Score=36.64  Aligned_cols=101  Identities=12%  Similarity=0.082  Sum_probs=61.6

Q ss_pred             HHHcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHHHHHHHhhcC
Q 029414           22 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYS   98 (194)
Q Consensus        22 ~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~   98 (194)
                      ....++.+||-.|.  +.|..+..+|+..  +.++++++.+++..+.+++    .+...-+..... +..+.....    
T Consensus       134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~----  203 (325)
T TIGR02825       134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA----  203 (325)
T ss_pred             hCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh----
Confidence            33456788998884  5677888888874  5689988888877666543    354211111111 222222222    


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                       ..+.+|+++ |....   ..++.+++.|+++|.++.-.
T Consensus       204 -~~~gvdvv~-d~~G~---~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       204 -SPDGYDCYF-DNVGG---EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             -CCCCeEEEE-ECCCH---HHHHHHHHHhCcCcEEEEec
Confidence             124699877 44322   34577889999999999743

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=94.94  E-value=0.26  Score=38.67  Aligned_cols=102  Identities=18%  Similarity=0.176  Sum_probs=70.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      .++.|+-+|---=.+...++..+|  .++..+|++...++...+-.++.++. |++.+.-|....+|+-.     .++||
T Consensus       152 ~gK~I~vvGDDDLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~-----~~kFD  223 (354)
T COG1568         152 EGKEIFVVGDDDLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL-----KRKFD  223 (354)
T ss_pred             CCCeEEEEcCchhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH-----HhhCC
Confidence            457799998433222222333333  58999999999999999999999986 78888888877666632     47899


Q ss_pred             EEEEeCC--ccccHHHHHHHHhcccCC---eEEEE
Q 029414          106 YAFVDAD--KDNYCNYHERLMKLLKVG---GIAVY  135 (194)
Q Consensus       106 ~i~id~~--~~~~~~~~~~~~~~L~~g---G~lv~  135 (194)
                      +++-|++  ......++..-...|+--   |++-+
T Consensus       224 vfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgi  258 (354)
T COG1568         224 VFITDPPETIKALKLFLGRGIATLKGEGCAGYFGI  258 (354)
T ss_pred             eeecCchhhHHHHHHHHhccHHHhcCCCccceEee
Confidence            9988876  234455555555667655   55444

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.89  E-value=0.046  Score=42.98  Aligned_cols=70  Identities=11%  Similarity=-0.019  Sum_probs=49.7

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414           29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  108 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~  108 (194)
                      +++|+.||.|..+..+....  -..+.++|+++.+.+..+.++...       ++.+|..++...-.     .+.+|+++
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~-----~~~~D~l~   67 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDF-----IPDIDLLT   67 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhc-----CCCCCEEE
Confidence            68999999999988887652  236788999999998888876321       45566655432210     25799999


Q ss_pred             EeCC
Q 029414          109 VDAD  112 (194)
Q Consensus       109 id~~  112 (194)
                      .+.+
T Consensus        68 ~gpP   71 (275)
T cd00315          68 GGFP   71 (275)
T ss_pred             eCCC
Confidence            8754

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=94.84  E-value=0.68  Score=37.16  Aligned_cols=100  Identities=12%  Similarity=0.104  Sum_probs=62.5

Q ss_pred             HHcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHHHHHHHhhcCC
Q 029414           23 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE   99 (194)
Q Consensus        23 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~   99 (194)
                      ...++.+||-.|+  +.|..+..+|+..  +.+++++..+++..+.+++.+   |...-+..... +..+.+....    
T Consensus       148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~----  218 (338)
T cd08295         148 KPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYF----  218 (338)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhC----
Confidence            3456789999886  5677778888875  568888888887766665433   43211221111 3333333321    


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                       .+.+|+++ |....   ..+..+++.|+++|.++.-
T Consensus       219 -~~gvd~v~-d~~g~---~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         219 -PNGIDIYF-DNVGG---KMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             -CCCcEEEE-ECCCH---HHHHHHHHHhccCcEEEEe
Confidence             24699877 44322   4577888999999999864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=94.68  E-value=0.5  Score=38.09  Aligned_cols=102  Identities=23%  Similarity=0.236  Sum_probs=59.3

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .++.+||-.|+|. |..+..+|+... ...+++++.+++..+.+++    .+...-+.....+. +....+.    ....
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~-~~~~~~~----~~~~  228 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSREMSA-PQIQSVL----RELR  228 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCcccCH-HHHHHHh----cCCC
Confidence            3567899988753 445566677653 2347889988887776543    34321111111121 2222221    1246


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +|.+++|....  ...+..+.+.+++||.+++-..
T Consensus       229 ~d~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~  261 (347)
T PRK10309        229 FDQLILETAGV--PQTVELAIEIAGPRAQLALVGT  261 (347)
T ss_pred             CCeEEEECCCC--HHHHHHHHHHhhcCCEEEEEcc
Confidence            88666665432  3467778899999999998543

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=94.59  E-value=0.026  Score=46.50  Aligned_cols=65  Identities=22%  Similarity=0.121  Sum_probs=57.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc-EEEEecchHHHHH
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD   92 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~   92 (194)
                      ..+..|.|+.||.|-.++..+..   +++|++-|.++++++..+.++..+.+.+. ++++..|+.+++.
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr  313 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR  313 (495)
T ss_pred             CCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence            35678999999999999999884   68999999999999999999988887655 9999999988774

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.58  E-value=0.3  Score=41.79  Aligned_cols=101  Identities=19%  Similarity=0.185  Sum_probs=59.7

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE---------------ecchHH
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI---------------ESEALS   89 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~---------------~~d~~~   89 (194)
                      ++.+++-+|+|. |..+...+..+  +..|+.+|.+++.++.+++    .+.. .+.+-               -.+..+
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~----lGa~-~v~v~~~e~g~~~~gYa~~~s~~~~~  235 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS----MGAE-FLELDFKEEGGSGDGYAKVMSEEFIA  235 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCe-EEeccccccccccccceeecCHHHHH
Confidence            568999999985 56777777775  4679999999987776664    2321 11111               011111


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEE
Q 029414           90 VLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ....+..+  ....+|+|+....   .+...-..+...+.+|||++|+=
T Consensus       236 ~~~~~~~e--~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       236 AEMELFAA--QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             HHHHHHHH--HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence            11111110  1357999975542   22333356777899999999774

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.57  E-value=0.68  Score=35.32  Aligned_cols=99  Identities=20%  Similarity=0.256  Sum_probs=60.7

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .++.+||..|+|. |..+..+++..  +.++++++.+++..+.+++.    +...-+.....+..+... ..    ..+.
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~-~~----~~~~  201 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELR-LT----GGGG  201 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHH-Hh----cCCC
Confidence            5678999999885 66777777764  47899999988766665432    321111111112222111 11    1367


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +|+++.....   ...+..+++.++++|.++.-.
T Consensus       202 ~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         202 ADVVIDAVGG---PETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             CCEEEECCCC---HHHHHHHHHhcccCCEEEEEc
Confidence            9988854322   145677788999999998743

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PLN02740 Alcohol dehydrogenase-like

Probab=94.56  E-value=0.67  Score=38.03  Aligned_cols=102  Identities=20%  Similarity=0.263  Sum_probs=59.5

Q ss_pred             HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe--cchHHHHHHHhhcCC
Q 029414           23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE   99 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~   99 (194)
                      ...++++||-+|+|. |..++.+|+... ..+|+++|.+++.++.+++    .+....+....  .+..+.+..+.    
T Consensus       195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~----  265 (381)
T PLN02740        195 NVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT----  265 (381)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh----
Confidence            345678999998753 445566677643 2369999999988887754    34321122111  11223333321    


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEec
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  137 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~  137 (194)
                       .+.+|+++-...   ....+..++..++++ |.+++-.
T Consensus       266 -~~g~dvvid~~G---~~~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        266 -GGGVDYSFECAG---NVEVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             -CCCCCEEEECCC---ChHHHHHHHHhhhcCCCEEEEEc
Confidence             236997764322   224567777888886 8887643

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=94.48  E-value=0.057  Score=41.87  Aligned_cols=47  Identities=11%  Similarity=0.017  Sum_probs=37.1

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCcchHHhHHHHHHH
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPIIKK   73 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~   73 (194)
                      +-+|+|+|+|.|..+..++..+..       ..+++.+|.+|...+.-++.+..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            468999999999999998877652       35899999999998888888765

; PDB: 4F3N_A 1ZKD_B.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=94.36  E-value=0.043  Score=36.72  Aligned_cols=40  Identities=20%  Similarity=0.494  Sum_probs=28.8

Q ss_pred             ceeEEEEeCC---------ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          103 SFDYAFVDAD---------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       103 ~fD~i~id~~---------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      +||+|+|-..         ......+|+.+..+|+|||++++.--.|..
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~s   49 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKS   49 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHH
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHH
Confidence            4899987654         345678899999999999999997655544

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PLN02827 Alcohol dehydrogenase-like

Probab=94.35  E-value=0.62  Score=38.26  Aligned_cols=101  Identities=23%  Similarity=0.248  Sum_probs=58.1

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe--cchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~~  100 (194)
                      ..++.+||-.|+|. |..++.+|+... ...+++++.+++..+.+++    .+...-+....  .+..+.+..+.     
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~-----  260 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT-----  260 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh-----
Confidence            44678999988743 445556676643 2368889988877776643    35321111111  12222233321     


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~  137 (194)
                      .+.+|+++- ...  ....+..+.+.+++| |.+++-.
T Consensus       261 ~~g~d~vid-~~G--~~~~~~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        261 GGGADYSFE-CVG--DTGIATTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             CCCCCEEEE-CCC--ChHHHHHHHHhhccCCCEEEEEC
Confidence            236897763 321  223467788899998 9998744

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.25  E-value=1  Score=36.06  Aligned_cols=100  Identities=16%  Similarity=0.211  Sum_probs=57.6

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++.+||-+|+|. |..+..+|+..  +.+ +++++.+++..+.+++    .+...-+.....+ .+.+....    ..
T Consensus       161 ~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~----~~  229 (339)
T cd08239         161 VSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT----SG  229 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh----CC
Confidence            34577898888742 34555667765  445 9999998887776644    2432111111112 22222221    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ..+|+++-...   ....+..+++.|+++|.+++-.
T Consensus       230 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         230 AGADVAIECSG---NTAARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             CCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEEc
Confidence            46997774322   2234566789999999998743

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.25  E-value=0.5  Score=38.87  Aligned_cols=96  Identities=17%  Similarity=0.086  Sum_probs=55.7

Q ss_pred             CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ++.+|+-+|+| .|..+...+..+  +.+|+.+|.+++..+.+.+.+   +.  .+.....+..+ +.+.      -..+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~~~-l~~~------l~~a  231 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNAYE-IEDA------VKRA  231 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCHHH-HHHH------HccC
Confidence            56789999997 456666666665  458999999887665544433   21  22222222222 2332      2568


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEE
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      |+|+....   .....-+.+...+.++++++|+-
T Consensus       232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD  265 (370)
T TIGR00518       232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD  265 (370)
T ss_pred             CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence            99886532   11121123556677899887664

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.17  E-value=1.7  Score=32.11  Aligned_cols=101  Identities=19%  Similarity=0.207  Sum_probs=51.8

Q ss_pred             eEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHH------------HHHcCCCCcEEEEecchHHHHHHHh
Q 029414           29 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLL   95 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~v~~~~~d~~~~~~~~~   95 (194)
                      +|--+|.|  +.++.+|..+. .+.+|+++|++++.++..++-            +.+..-..+.++. .|..+..    
T Consensus         2 ~I~ViGlG--yvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai----   74 (185)
T PF03721_consen    2 KIAVIGLG--YVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI----   74 (185)
T ss_dssp             EEEEE--S--TTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred             EEEEECCC--cchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence            46667664  43333333221 257999999999877654421            1111001233333 2322222    


Q ss_pred             hcCCCCCceeEEEEeCC----------ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414           96 KYSENEGSFDYAFVDAD----------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~----------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                            ...|++|+..+          .....+..+.+.+.++++.++++..+..+|
T Consensus        75 ------~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppG  125 (185)
T PF03721_consen   75 ------KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPG  125 (185)
T ss_dssp             ------HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTT
T ss_pred             ------hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEe
Confidence                  24688887644          122356677778899999999998877666

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=94.13  E-value=0.24  Score=39.46  Aligned_cols=38  Identities=29%  Similarity=0.415  Sum_probs=28.0

Q ss_pred             CceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          102 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       102 ~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +.||+|+....   ..+..++++.+.+.|+|||+-+=-..+
T Consensus       258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPL  298 (369)
T KOG2798|consen  258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPL  298 (369)
T ss_pred             CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccce
Confidence            47998854321   567889999999999999987754333

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=94.03  E-value=0.82  Score=36.86  Aligned_cols=102  Identities=17%  Similarity=0.225  Sum_probs=60.8

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++++||-.|+| .|..+..+|+... ...+++++.+++..+.+++    .+...-+.....+..+....+.    ...
T Consensus       164 ~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~  234 (351)
T cd08285         164 IKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT----GGK  234 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh----CCC
Confidence            4456788888765 3556666777654 3468999998877766654    3432112222223223222321    124


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+|+++-....   ...+..+++.|+++|.++.-.
T Consensus       235 ~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         235 GVDAVIIAGGG---QDTFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             CCcEEEECCCC---HHHHHHHHHHhhcCCEEEEec
Confidence            69977743221   245778889999999998644

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.90  E-value=0.056  Score=44.03  Aligned_cols=90  Identities=21%  Similarity=0.225  Sum_probs=70.2

Q ss_pred             HHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhh
Q 029414           17 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   96 (194)
Q Consensus        17 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~   96 (194)
                      +-.+++....+.+|+|..|..|..|..+|......+++.++|.+++..+..++.+...|.. .+....+|+... .... 
T Consensus       204 lpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t-~~~~-  280 (413)
T KOG2360|consen  204 LPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNT-ATPE-  280 (413)
T ss_pred             chhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCC-CCcc-
Confidence            3345555556789999999999999999998876799999999999999999999999976 677778888764 2210 


Q ss_pred             cCCCCCceeEEEEeCC
Q 029414           97 YSENEGSFDYAFVDAD  112 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~  112 (194)
                         .-+..-.|++|+.
T Consensus       281 ---~~~~v~~iL~Dps  293 (413)
T KOG2360|consen  281 ---KFRDVTYILVDPS  293 (413)
T ss_pred             ---cccceeEEEeCCC
Confidence               1245677777753

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=93.90  E-value=0.13  Score=41.07  Aligned_cols=94  Identities=18%  Similarity=0.282  Sum_probs=60.1

Q ss_pred             HHHHHHHHHcC-C-CeE---EEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           16 QLMAMLLRLVN-A-KKT---IEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        16 ~~l~~l~~~~~-~-~~v---LeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      .++..|+...+ . .++   +|||+  |.++++-+.... .+...+++|++.-..+.|++++.++++...+.+++-....
T Consensus        87 hwI~DLLss~q~~k~~i~~GiDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~k  164 (419)
T KOG2912|consen   87 HWIEDLLSSQQSDKSTIRRGIDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQK  164 (419)
T ss_pred             HHHHHHhhcccCCCcceeeeeeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchh
Confidence            44455554432 2 233   57766  666666554432 2567899999999999999999999999889888876544


Q ss_pred             H-HHHHhhcCCCCCceeEEEEeCC
Q 029414           90 V-LDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        90 ~-~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      . +...... ..+..||++.++++
T Consensus       165 tll~d~~~~-~~e~~ydFcMcNPP  187 (419)
T KOG2912|consen  165 TLLMDALKE-ESEIIYDFCMCNPP  187 (419)
T ss_pred             hcchhhhcc-CccceeeEEecCCc
Confidence            2 2222111 11234888877654

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=93.76  E-value=1.2  Score=36.00  Aligned_cols=101  Identities=20%  Similarity=0.227  Sum_probs=62.7

Q ss_pred             HcCCCeEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVFT--GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G~--G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ...+++||-.|...  |..++.||+...  ..++++-.+++..+.+    ...+-+.-+.+...|..+...++.    ..
T Consensus       140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~----~~lGAd~vi~y~~~~~~~~v~~~t----~g  209 (326)
T COG0604         140 LKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELL----KELGADHVINYREEDFVEQVRELT----GG  209 (326)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHH----HhcCCCEEEcCCcccHHHHHHHHc----CC
Confidence            45678999999554  557778888864  3666665555444433    334544334455555555555542    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ..+|+|+-..    -...+......|+++|.++.-..
T Consensus       210 ~gvDvv~D~v----G~~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         210 KGVDVVLDTV----GGDTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             CCceEEEECC----CHHHHHHHHHHhccCCEEEEEec
Confidence            4699887532    23456667899999999998544

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.72  E-value=1.5  Score=34.22  Aligned_cols=99  Identities=18%  Similarity=0.188  Sum_probs=57.4

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ++++||-+|+|. |..+..+|+... ..+|+.+|.+++..+.+++    .+...-+..  .+..+......    ....+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~~~~~~~~----~~~g~  188 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATALAEP--EVLAERQGGLQ----NGRGV  188 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhHHHHHHHh----CCCCC
Confidence            567899888753 445566777643 2348889988877776655    343211111  11112222221    12468


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      |+++-...   ....++.+.+.++++|.++.-..
T Consensus       189 d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       189 DVALEFSG---ATAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             CEEEECCC---ChHHHHHHHHHhcCCCEEEEecc
Confidence            97764221   23456778899999999997543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=93.65  E-value=0.22  Score=43.16  Aligned_cols=96  Identities=17%  Similarity=0.164  Sum_probs=63.4

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH-----HHHHHhhcC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-----VLDQLLKYS   98 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~~~   98 (194)
                      +.+.+.|||+||..|.+.--.+..+|.++.|+++|+-|-.           . .+++.-++.|...     .+.....  
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p-~~~c~t~v~dIttd~cr~~l~k~l~--  107 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------P-IPNCDTLVEDITTDECRSKLRKILK--  107 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------c-CCccchhhhhhhHHHHHHHHHHHHH--
Confidence            4467889999999999999999999988999999997721           1 1244333333221     1122211  


Q ss_pred             CCCCceeEEEEeCCcc--------------ccHHHHHHHHhcccCCeEEEE
Q 029414           99 ENEGSFDYAFVDADKD--------------NYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~--------------~~~~~~~~~~~~L~~gG~lv~  135 (194)
                        .-+.|+|+-|+.+.              -....++.+...|+.||.++.
T Consensus       108 --t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt  156 (780)
T KOG1098|consen  108 --TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT  156 (780)
T ss_pred             --hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence              24569999987521              123446667788999999554

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=93.59  E-value=0.073  Score=40.07  Aligned_cols=47  Identities=15%  Similarity=0.193  Sum_probs=35.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCcchHHhHHHHHH
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPED-GQITAIDVNRETYEIGLPIIK   72 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~   72 (194)
                      .|-++.|-.||.|+....+....... ..|++.|++++.++.|++|+.
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            45689999999999877776655422 579999999999998887763

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=93.55  E-value=0.78  Score=31.61  Aligned_cols=94  Identities=16%  Similarity=0.105  Sum_probs=49.2

Q ss_pred             HHHHHHcCCCeEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhc
Q 029414           19 AMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   97 (194)
Q Consensus        19 ~~l~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~   97 (194)
                      ..+++..+..+|+|+|.|.=. .+..|.+.   +..|+++|+++.       ..     +..+.++..|..+.-..+   
T Consensus         6 ~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~-------~a-----~~g~~~v~DDif~P~l~i---   67 (127)
T PF03686_consen    6 EYIARLNNYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR-------KA-----PEGVNFVVDDIFNPNLEI---   67 (127)
T ss_dssp             HHHHHHS-SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----------------STTEE---SSS--HHH---
T ss_pred             HHHHHhCCCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc-------cc-----ccCcceeeecccCCCHHH---
Confidence            345556677799999998765 45555554   578999999986       11     124566776766532222   


Q ss_pred             CCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414           98 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                         -...|+|+.-.+..+....+-.+.+.+  |.-+++
T Consensus        68 ---Y~~a~lIYSiRPP~El~~~il~lA~~v--~adlii  100 (127)
T PF03686_consen   68 ---YEGADLIYSIRPPPELQPPILELAKKV--GADLII  100 (127)
T ss_dssp             ---HTTEEEEEEES--TTSHHHHHHHHHHH--T-EEEE
T ss_pred             ---hcCCcEEEEeCCChHHhHHHHHHHHHh--CCCEEE
Confidence               257999998777666655555555543  344444

; PDB: 2K4M_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=93.51  E-value=0.36  Score=40.66  Aligned_cols=97  Identities=14%  Similarity=0.087  Sum_probs=66.3

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414           29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  108 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~  108 (194)
                      +++.+|||.-..+..+-+..  -..|+.+|.|+..++.....-. .. .+..++...|.....-       ++++||.++
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~-~~-~~~~~~~~~d~~~l~f-------edESFdiVI  119 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNA-KE-RPEMQMVEMDMDQLVF-------EDESFDIVI  119 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccc-cC-CcceEEEEecchhccC-------CCcceeEEE
Confidence            79999999887777776542  2479999999988887765543 12 2467788877755422       257888776


Q ss_pred             EeCC-------------ccccHHHHHHHHhcccCCeEEEEe
Q 029414          109 VDAD-------------KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       109 id~~-------------~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      --+.             .......+..+.+.+++||.++.-
T Consensus       120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv  160 (482)
T KOG2352|consen  120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV  160 (482)
T ss_pred             ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence            3221             112334567788999999997664

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=93.49  E-value=0.5  Score=34.30  Aligned_cols=101  Identities=12%  Similarity=0.048  Sum_probs=61.1

Q ss_pred             EEcccccHHHHHHHhhCCCCCEEEEEeCC--cchHH---hHHHHHHHcCCCCcEEEEe-cchHHHHHHHhhcCCCCCcee
Q 029414           32 EIGVFTGYSLLLTALTIPEDGQITAIDVN--RETYE---IGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        32 eiG~G~G~~~~~la~~~~~~~~v~~iD~~--~~~~~---~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      -+|=|.=.+++.|++.......+++.-.+  .+..+   .+.++++...- ..++++. -|+.........   ....||
T Consensus         2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~~---~~~~FD   77 (166)
T PF10354_consen    2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFRL---KNQRFD   77 (166)
T ss_pred             eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCcccccccc---cCCcCC
Confidence            35666677888898887645566665443  33332   23455555432 2344443 355444333211   247899


Q ss_pred             EEEEeCCcc----------------ccHHHHHHHHhcccCCeEEEEe
Q 029414          106 YAFVDADKD----------------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       106 ~i~id~~~~----------------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .|+.+.+..                -...+|+.+.++|+++|.|.+.
T Consensus        78 rIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT  124 (166)
T PF10354_consen   78 RIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT  124 (166)
T ss_pred             EEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            999875521                1356788999999999999984

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=93.46  E-value=1.3  Score=35.89  Aligned_cols=105  Identities=21%  Similarity=0.218  Sum_probs=60.0

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .++.+|+-.|+|. |..+..+|+..  +.++++++.+++.++.+++    .+...-+.....+..+........ .....
T Consensus       165 ~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~-t~~~g  237 (349)
T TIGR03201       165 KKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAF-AKARG  237 (349)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhh-cccCC
Confidence            4577999999854 66677778775  4589999999988877754    243211221111111222211100 01134


Q ss_pred             eeE---EEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          104 FDY---AFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       104 fD~---i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +|.   +++|...  ....++.+.+.|++||.+++-..
T Consensus       238 ~d~~~d~v~d~~g--~~~~~~~~~~~l~~~G~iv~~G~  273 (349)
T TIGR03201       238 LRSTGWKIFECSG--SKPGQESALSLLSHGGTLVVVGY  273 (349)
T ss_pred             CCCCcCEEEECCC--ChHHHHHHHHHHhcCCeEEEECc
Confidence            551   3445432  23456677899999999998544

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=93.38  E-value=1  Score=36.07  Aligned_cols=101  Identities=20%  Similarity=0.222  Sum_probs=57.7

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++.+||..|+| .|..++.+|+... ..++++++.+++..+.+++    .+...-+.....+..+.+....    ..+
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~----~~~  235 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT----GGR  235 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc----CCC
Confidence            3456788887764 3667777888753 2478888777766655443    2322111112222223222221    125


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+|+++ |....  ...+..+++.|+++|.++.-
T Consensus       236 ~~d~vl-d~~g~--~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         236 GVDCVI-EAVGF--EETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             CCcEEE-EccCC--HHHHHHHHHHhhcCCEEEEE
Confidence            699777 33221  24677788999999998864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=93.15  E-value=2.2  Score=34.77  Aligned_cols=101  Identities=20%  Similarity=0.285  Sum_probs=58.8

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe--cchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~~  100 (194)
                      ...+.+||-.|+|. |..++.+|+... ..+|+++|.+++..+.+++    .+...-+....  .+..+.+.++.     
T Consensus       183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-----  252 (368)
T TIGR02818       183 VEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT-----  252 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh-----
Confidence            44578899998753 456666777653 2379999999988777754    24321111111  11222222221     


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~  137 (194)
                      .+.+|+++- ...  ....+..+++.++++ |.++.-.
T Consensus       253 ~~g~d~vid-~~G--~~~~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       253 DGGVDYSFE-CIG--NVNVMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             CCCCCEEEE-CCC--CHHHHHHHHHHhhcCCCeEEEEe
Confidence            236897763 321  134567778899886 9887643

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.14  E-value=0.92  Score=36.74  Aligned_cols=96  Identities=14%  Similarity=0.140  Sum_probs=56.8

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeC---CcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDV---NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~---~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      .++.+||-+|+|. |..+..+|+..  +.++++++.   +++..+.++    +.+.. .+.....+..+ . ..      
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~----~~Ga~-~v~~~~~~~~~-~-~~------  235 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVE----ELGAT-YVNSSKTPVAE-V-KL------  235 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHH----HcCCE-EecCCccchhh-h-hh------
Confidence            3567899998863 55667777775  458999887   455555444    34432 12111111111 1 11      


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .+.+|+||-....   ...+..+.+.++++|.+++-..
T Consensus       236 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         236 VGEFDLIIEATGV---PPLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             cCCCCEEEECcCC---HHHHHHHHHHccCCcEEEEEec
Confidence            2569977643322   2356778899999999987543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=92.88  E-value=0.55  Score=33.57  Aligned_cols=95  Identities=18%  Similarity=0.099  Sum_probs=58.4

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH------cCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK------AGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      +|.-+|+|.+..++....... +.+|+....+++.++..++.-..      ..++.++.+ ..|..+.+          .
T Consensus         1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~   68 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------E   68 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------T
T ss_pred             CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------C
Confidence            366788887765554332222 45899999998777766654321      112234544 34443332          4


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      .-|+|++.-+......+++.+.+.++++-.++.
T Consensus        69 ~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   69 DADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             T-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred             cccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence            579999987777778899999999987777776

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=92.78  E-value=2.8  Score=34.13  Aligned_cols=102  Identities=19%  Similarity=0.278  Sum_probs=59.2

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec--chHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~~~  100 (194)
                      ..++.+||-.|+| .|..+..+|+... ..++++++.+++..+.+++    .+...-+.....  +..+.+..+.     
T Consensus       184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~-----  253 (368)
T cd08300         184 VEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT-----  253 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh-----
Confidence            4567889988864 2445566777653 2379999999988776653    343211211111  1222222321     


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEecc
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  138 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  138 (194)
                      .+.+|+|+- ...  ....+..+.+.++++ |.++.-..
T Consensus       254 ~~g~d~vid-~~g--~~~~~~~a~~~l~~~~G~~v~~g~  289 (368)
T cd08300         254 DGGVDYTFE-CIG--NVKVMRAALEACHKGWGTSVIIGV  289 (368)
T ss_pred             CCCCcEEEE-CCC--ChHHHHHHHHhhccCCCeEEEEcc
Confidence            236997764 321  124567788999887 88887543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=92.76  E-value=4.3  Score=33.65  Aligned_cols=122  Identities=20%  Similarity=0.242  Sum_probs=75.0

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      +|-...+-..++.+..+..++-..+|.+..+..+...++++.+++..+. -.......++.+...++  .+.++..+..+
T Consensus        54 nPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv--~v~~~d~~d~~  131 (386)
T PF01053_consen   54 NPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGV--EVTFVDPTDLE  131 (386)
T ss_dssp             -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTS--EEEEESTTSHH
T ss_pred             cccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCc--EEEEeCchhHH
Confidence            4556666667777778888999999998887666666766788888764 33455556666666665  46666553334


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCe--EEEEeccc
Q 029414           90 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG--IAVYDNTL  139 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG--~lv~~~~~  139 (194)
                      .+....     .+.-.+||+..+  +.-....++.+.++.+..|  .+++||+.
T Consensus       132 ~l~~~l-----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~  180 (386)
T PF01053_consen  132 ALEAAL-----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTF  180 (386)
T ss_dssp             HHHHHH-----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTT
T ss_pred             HHHhhc-----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccc
Confidence            333322     457899999865  2223344555656665554  56666654

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=92.71  E-value=1.9  Score=35.02  Aligned_cols=104  Identities=22%  Similarity=0.304  Sum_probs=66.5

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~  101 (194)
                      ..++.+|.-+|+|. |..++.-|.... ..+++++|++++.++.|++.    |..+-+.-... |..+....+.     .
T Consensus       183 v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~i~~~T-----~  252 (366)
T COG1062         183 VEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEAIVELT-----D  252 (366)
T ss_pred             CCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc----CCceeecchhhhhHHHHHHHhc-----C
Confidence            45677899999874 666666676655 78999999999999887764    43322222211 3444444442     3


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      +..|..|--.   .....++.++..++++|..++-.+.-
T Consensus       253 gG~d~~~e~~---G~~~~~~~al~~~~~~G~~v~iGv~~  288 (366)
T COG1062         253 GGADYAFECV---GNVEVMRQALEATHRGGTSVIIGVAG  288 (366)
T ss_pred             CCCCEEEEcc---CCHHHHHHHHHHHhcCCeEEEEecCC
Confidence            4678776432   22236777778888898888755433

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.54  E-value=0.76  Score=36.52  Aligned_cols=87  Identities=13%  Similarity=0.090  Sum_probs=53.1

Q ss_pred             CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      +++++|-+|+| .|..++.+|+..+ ...++++|.+++.++.+++.    .      ++  |..+.  .       ...+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--~-------~~g~  201 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD--P-------RRDY  201 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--c-------CCCC
Confidence            55688988875 3566677777754 33477788877666554431    1      11  11110  1       2468


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |+|| |+..  ....++.+.+.++++|.+++-.
T Consensus       202 Dvvi-d~~G--~~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       202 RAIY-DASG--DPSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             CEEE-ECCC--CHHHHHHHHHhhhcCcEEEEEe
Confidence            9776 4322  2235678889999999999754

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=92.53  E-value=1  Score=37.37  Aligned_cols=102  Identities=20%  Similarity=0.214  Sum_probs=60.7

Q ss_pred             cCCCeEEEEc--ccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHc----CCCCcEEEEe----cchHHHHHH
Q 029414           25 VNAKKTIEIG--VFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKA----GVDHKINFIE----SEALSVLDQ   93 (194)
Q Consensus        25 ~~~~~vLeiG--~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~----~~~~~v~~~~----~d~~~~~~~   93 (194)
                      .++.+|+-+|  .+.|..+..+|+.... ..+++++|.+++.++.+++.+...    |.  ...++.    .+..+.+..
T Consensus       174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~v~~  251 (410)
T cd08238         174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHATLME  251 (410)
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHHHHH
Confidence            3457888887  3367777778876421 237999999999998888753211    11  111221    122233333


Q ss_pred             HhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414           94 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +.    ....+|+++.....   ...+..+.+.++++|.+++
T Consensus       252 ~t----~g~g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~  286 (410)
T cd08238         252 LT----GGQGFDDVFVFVPV---PELVEEADTLLAPDGCLNF  286 (410)
T ss_pred             Hh----CCCCCCEEEEcCCC---HHHHHHHHHHhccCCeEEE
Confidence            21    12469988764322   3456778899998886654

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=92.42  E-value=0.54  Score=38.24  Aligned_cols=48  Identities=21%  Similarity=0.061  Sum_probs=38.3

Q ss_pred             CCeEEEEcccccHHHHHHHhhCC-------CCCEEEEEeCCcchHHhHHHHHHHc
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIP-------EDGQITAIDVNRETYEIGLPIIKKA   74 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~-------~~~~v~~iD~~~~~~~~a~~~~~~~   74 (194)
                      +-.++|+|+|.|.....+++...       ...++..+|+|++....=|+.++..
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            35799999999999888776551       2578999999999888777777654

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=92.41  E-value=0.43  Score=30.75  Aligned_cols=86  Identities=10%  Similarity=0.022  Sum_probs=51.9

Q ss_pred             EEEEcccccHHHHHHHhhCCC-C---CEEE-EEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           30 TIEIGVFTGYSLLLTALTIPE-D---GQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        30 vLeiG~G~G~~~~~la~~~~~-~---~~v~-~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      |.=||+  |..+..++..+-. +   .++. +.+.+++..+..++.+   +    +.+...+..+...          .-
T Consensus         2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~~----------~a   62 (96)
T PF03807_consen    2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAAQ----------EA   62 (96)
T ss_dssp             EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHHH----------HT
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhhc----------cC
Confidence            445666  4444444433311 2   5777 4499988777666553   2    4444445555543          36


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      |+|++...+....+.++.+ ..+.++.+++-
T Consensus        63 dvvilav~p~~~~~v~~~i-~~~~~~~~vis   92 (96)
T PF03807_consen   63 DVVILAVKPQQLPEVLSEI-PHLLKGKLVIS   92 (96)
T ss_dssp             SEEEE-S-GGGHHHHHHHH-HHHHTTSEEEE
T ss_pred             CEEEEEECHHHHHHHHHHH-hhccCCCEEEE
Confidence            9999988888888888888 66666666653

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=92.38  E-value=1.4  Score=36.45  Aligned_cols=106  Identities=18%  Similarity=0.204  Sum_probs=61.4

Q ss_pred             CeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcC--------
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS--------   98 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--------   98 (194)
                      .+|--+|-  |+.++.+|..+.. +.+|+++|+++..++..++     |   ...+..-+..+.+.......        
T Consensus        10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~   79 (436)
T COG0677          10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP   79 (436)
T ss_pred             eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence            56666766  6666655554432 4789999999977765432     1   23333333333222221110        


Q ss_pred             CCCCceeEEEEeCC------c----cccHHHHHHHHhcccCCeEEEEeccccccc
Q 029414           99 ENEGSFDYAFVDAD------K----DNYCNYHERLMKLLKVGGIAVYDNTLWGGT  143 (194)
Q Consensus        99 ~~~~~fD~i~id~~------~----~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  143 (194)
                      .+...-|++++..+      .    +......+.+.+.|++|-++++..+.++|.
T Consensus        80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT  134 (436)
T COG0677          80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT  134 (436)
T ss_pred             hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence            01125677766533      1    122344566678999999999999888884

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.36  E-value=0.91  Score=36.24  Aligned_cols=98  Identities=10%  Similarity=0.008  Sum_probs=55.2

Q ss_pred             CeEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           28 KKTIEIGVFT--GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        28 ~~vLeiG~G~--G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      .+|+-+|+|.  |+.+..|++.   +..|+.++.+++.++..++.   .|    +.+.........+.........+.||
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~---~G----l~i~~~g~~~~~~~~~~~~~~~~~~D   72 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQA---GG----LTLVEQGQASLYAIPAETADAAEPIH   72 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhc---CC----eEEeeCCcceeeccCCCCcccccccC
Confidence            4688899874  4456666653   45788888876555544431   12    11111000000000000001135799


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +|++.....+..+.++.+.+.+.++..+++
T Consensus        73 ~viv~vK~~~~~~al~~l~~~l~~~t~vv~  102 (305)
T PRK05708         73 RLLLACKAYDAEPAVASLAHRLAPGAELLL  102 (305)
T ss_pred             EEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence            999976655667788888899999987654

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=92.14  E-value=3  Score=33.32  Aligned_cols=101  Identities=18%  Similarity=0.267  Sum_probs=60.8

Q ss_pred             HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ...++.+||-.|+|. |..++.+|+..  +.+++++..+++..+.+++    .+...-+.....+..+.+..+.    ..
T Consensus       156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~  225 (337)
T cd08261         156 GVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT----DG  225 (337)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh----CC
Confidence            344677899998764 66777788874  5788888877776665533    2322112222223323333321    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+|+++-....   ...+..+++.|+++|.++.-
T Consensus       226 ~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~~  257 (337)
T cd08261         226 EGADVVIDATGN---PASMEEAVELVAHGGRVVLV  257 (337)
T ss_pred             CCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence            458988754221   24567788999999998863

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=92.07  E-value=3  Score=31.15  Aligned_cols=81  Identities=16%  Similarity=0.189  Sum_probs=43.5

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEe
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      .+..+|+-+|||. |...+..+...+ -++++.+|.+.                   ...+.+++++.+....-+++.+.
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~   97 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK   97 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence            3568899999984 443333333322 47899999873                   22344555555543222344343


Q ss_pred             cchHH-HHHHHhhcCCCCCceeEEEEeCC
Q 029414           85 SEALS-VLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        85 ~d~~~-~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      ..... .+..+      ...+|+|+...+
T Consensus        98 ~~i~~~~~~~~------~~~~D~Vi~~~d  120 (202)
T TIGR02356        98 ERVTAENLELL------INNVDLVLDCTD  120 (202)
T ss_pred             hcCCHHHHHHH------HhCCCEEEECCC
Confidence            33322 22333      257998876544

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=91.74  E-value=2.5  Score=33.94  Aligned_cols=92  Identities=14%  Similarity=0.084  Sum_probs=57.1

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++.+||-.|+| .|..+..+|+..  +.++++++.+++..+.+++    .|...   ++.  ..+   .      ..+
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~---~------~~~  222 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAAS---AGG--AYD---T------PPE  222 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCce---ecc--ccc---c------Ccc
Confidence            3457799999864 344556677764  5689999998887766655    35331   111  000   0      024


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .+|+++.....   ...+..+.+.|++||.+++-..
T Consensus       223 ~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       223 PLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             cceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence            57876543222   2467888899999999988543

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=91.67  E-value=3.9  Score=32.92  Aligned_cols=101  Identities=16%  Similarity=0.185  Sum_probs=58.7

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++.+||-.|+| .|..+..+|+..  +. ++++++.+++..+.+++    .+...-+.....+..+.+....    ..
T Consensus       170 ~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~----~~  239 (351)
T cd08233         170 FKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT----GG  239 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh----CC
Confidence            3456788888764 244555667664  44 78899888887776644    2432112222223333333321    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +.+|+++-....   ...++.+++.|+++|.++.-.
T Consensus       240 ~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g  272 (351)
T cd08233         240 GGVDVSFDCAGV---QATLDTAIDALRPRGTAVNVA  272 (351)
T ss_pred             CCCCEEEECCCC---HHHHHHHHHhccCCCEEEEEc
Confidence            359987743221   235677889999999998744

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=91.67  E-value=2.7  Score=34.23  Aligned_cols=100  Identities=19%  Similarity=0.216  Sum_probs=58.2

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++++||-.|+|. |..+..+|+... ..++++++.+++..+.+++    .+...-+.....+..+.+....     ..
T Consensus       184 ~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~-----~~  253 (365)
T cd08278         184 PRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT-----GG  253 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh-----CC
Confidence            34567888887643 556667777754 3369999998877665543    2322111111112223233321     24


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+|+++-....   ...+..+++.++++|.++.-
T Consensus       254 ~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  284 (365)
T cd08278         254 GVDYALDTTGV---PAVIEQAVDALAPRGTLALV  284 (365)
T ss_pred             CCcEEEECCCC---cHHHHHHHHHhccCCEEEEe
Confidence            69977643221   23567788999999998864

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=91.61  E-value=3  Score=33.28  Aligned_cols=99  Identities=18%  Similarity=0.215  Sum_probs=59.5

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-cchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~  101 (194)
                      ..++.+||-.|+| .|..+..+|+... +.++++++.+++..+.+++    .+...-+.... .+..+.+...      .
T Consensus       160 ~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~------~  228 (338)
T PRK09422        160 IKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK------T  228 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh------c
Confidence            4456788888853 3456666777532 5689999999888777743    24321111111 1222222222      2


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +.+|.++.+...   ...++.+++.|+++|.++.-
T Consensus       229 ~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~  260 (338)
T PRK09422        229 GGAHAAVVTAVA---KAAFNQAVDAVRAGGRVVAV  260 (338)
T ss_pred             CCCcEEEEeCCC---HHHHHHHHHhccCCCEEEEE
Confidence            358877766432   34578889999999999863

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=91.60  E-value=2.5  Score=34.97  Aligned_cols=105  Identities=15%  Similarity=0.161  Sum_probs=59.7

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-cchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~  101 (194)
                      ...+++||-.|+|. |..++.+|+... -..++.+|.+++.++.+++    .+.. .+.... .+..+.+..+.    ..
T Consensus       183 ~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~----~~  252 (393)
T TIGR02819       183 VGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQIL----GE  252 (393)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHc----CC
Confidence            44567787777752 455566777653 3346667888777777665    2432 111111 12323333321    12


Q ss_pred             CceeEEEEeCCccc-----------cHHHHHHHHhcccCCeEEEEecc
Q 029414          102 GSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       102 ~~fD~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ..+|+++--...+.           ....++.+.+.+++||.+++-..
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~  300 (393)
T TIGR02819       253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL  300 (393)
T ss_pred             CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence            46897764322211           12468888999999999998544

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=91.55  E-value=1.2  Score=35.94  Aligned_cols=99  Identities=13%  Similarity=-0.020  Sum_probs=65.5

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC-cee
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-SFD  105 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~-~fD  105 (194)
                      ..+++|+.||.|...+.|....-  .-+.++|+++.+.+.-+.++..      ..+...|..+....-.     .. .+|
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~D   69 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL-----RKSDVD   69 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc-----cccCCC
Confidence            35799999999999988877531  3577899999998888877642      4555666665433321     12 789


Q ss_pred             EEEEeCCc----------------cccHHHHHHHHhcccCCeEEEEeccc
Q 029414          106 YAFVDADK----------------DNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       106 ~i~id~~~----------------~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +++-..+.                ....-.+..+...++| -.+++.|+-
T Consensus        70 vligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~  118 (328)
T COG0270          70 VLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVK  118 (328)
T ss_pred             EEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCc
Confidence            88755331                1111223455678888 788888864

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=91.51  E-value=3.6  Score=33.42  Aligned_cols=79  Identities=15%  Similarity=0.131  Sum_probs=46.0

Q ss_pred             CCCeEEEEcccc-cHHH-HHHHhhCCCCCEEEEEeCCc---------------------chHHhHHHHHHHcCCCCcEEE
Q 029414           26 NAKKTIEIGVFT-GYSL-LLTALTIPEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKINF   82 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~-~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~v~~   82 (194)
                      +.++|+-+|||. |... ..|+.. + -++++.+|.+.                     ...+.+++++.+.+..-+++.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~a-G-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~  100 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRA-G-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP  100 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHc-C-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence            567899999984 4433 334433 2 46899999874                     123455666666543334555


Q ss_pred             EecchH-HHHHHHhhcCCCCCceeEEEEeCC
Q 029414           83 IESEAL-SVLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        83 ~~~d~~-~~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      +..+.. +.+..+      ...+|+|+...+
T Consensus       101 ~~~~~~~~~~~~~------~~~~DlVid~~D  125 (338)
T PRK12475        101 VVTDVTVEELEEL------VKEVDLIIDATD  125 (338)
T ss_pred             EeccCCHHHHHHH------hcCCCEEEEcCC
Confidence            555543 233343      256998876554

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=91.48  E-value=1.6  Score=36.00  Aligned_cols=109  Identities=12%  Similarity=0.041  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc-EEEEecchHHHH
Q 029414           13 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVL   91 (194)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~   91 (194)
                      .-+-+|..+.......+|+-++-..|..+.+++...+     +.+--+--.....++|++.++++.. +++....  +  
T Consensus        31 ade~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~--~--  101 (378)
T PRK15001         31 ADEYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFLDST--A--  101 (378)
T ss_pred             HHHHHHHHHhhcccCCCEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceeeccc--c--
Confidence            3445566665543334799999999999999996432     2221112233456788888887633 5555322  2  


Q ss_pred             HHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhcccCCeEEEEec
Q 029414           92 DQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                       .+      .+.+|+|++-.++.  .....+..+.+.|+||+.|++-.
T Consensus       102 -~~------~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~  142 (378)
T PRK15001        102 -DY------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA  142 (378)
T ss_pred             -cc------cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence             22      25699999887643  33444667778999999988744

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=91.47  E-value=1  Score=35.18  Aligned_cols=73  Identities=16%  Similarity=0.123  Sum_probs=45.8

Q ss_pred             HHHHHHHH---HcCCCeEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           16 QLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        16 ~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .++..+..   ..+...++|+|||.|..+.+++..++    +...++.||...... .+-..+........++-+..|..
T Consensus         5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~   83 (259)
T PF05206_consen    5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIK   83 (259)
T ss_pred             HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEee
Confidence            34444444   23556899999999999999999884    257899999866444 33333433321124444555554


Q ss_pred             H
Q 029414           89 S   89 (194)
Q Consensus        89 ~   89 (194)
                      +
T Consensus        84 d   84 (259)
T PF05206_consen   84 D   84 (259)
T ss_pred             c
Confidence            4

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=91.35  E-value=4.1  Score=32.61  Aligned_cols=101  Identities=20%  Similarity=0.251  Sum_probs=56.9

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++.+||-.|+|. |..+..+|+..+ ..++++++.+++....+++    .+...-+.....+..+.+..+.    ...
T Consensus       164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~  234 (345)
T cd08286         164 VKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT----DGR  234 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh----CCC
Confidence            34566777766532 334455666543 2678888887766665553    3432222322233323233322    124


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+|+++ |..  .....++.+++.|+++|.++.-
T Consensus       235 ~~d~vl-d~~--g~~~~~~~~~~~l~~~g~~v~~  265 (345)
T cd08286         235 GVDVVI-EAV--GIPATFELCQELVAPGGHIANV  265 (345)
T ss_pred             CCCEEE-ECC--CCHHHHHHHHHhccCCcEEEEe
Confidence            699877 432  2234578888999999999863

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.33  E-value=2.7  Score=29.01  Aligned_cols=79  Identities=20%  Similarity=0.244  Sum_probs=47.6

Q ss_pred             CCeEEEEccc-ccHHHHH-HHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEec
Q 029414           27 AKKTIEIGVF-TGYSLLL-TALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus        27 ~~~vLeiG~G-~G~~~~~-la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      ..+|+-+|+| .|...+. |+.. + -++++.+|.+.                   ...+.+++++.+....-+++.+..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~-G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~   79 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARS-G-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE   79 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHH-T-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHHh-C-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence            4689999996 4543333 4443 2 57899998644                   123556777776553346777766


Q ss_pred             ch-HHHHHHHhhcCCCCCceeEEEEeCCc
Q 029414           86 EA-LSVLDQLLKYSENEGSFDYAFVDADK  113 (194)
Q Consensus        86 d~-~~~~~~~~~~~~~~~~fD~i~id~~~  113 (194)
                      +. .+....+.      ..+|+|+.....
T Consensus        80 ~~~~~~~~~~~------~~~d~vi~~~d~  102 (135)
T PF00899_consen   80 KIDEENIEELL------KDYDIVIDCVDS  102 (135)
T ss_dssp             HCSHHHHHHHH------HTSSEEEEESSS
T ss_pred             ccccccccccc------cCCCEEEEecCC
Confidence            66 33344442      468988876543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=91.28  E-value=1.2  Score=35.40  Aligned_cols=94  Identities=15%  Similarity=0.064  Sum_probs=60.9

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414           29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  108 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~  108 (194)
                      +++|+.||.|..++.|-.+.  -..+.++|+++.+.+.-+.|+.        ....+|..++-....     .+.+|+++
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l-----~~~~D~l~   66 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL-----PKDVDLLI   66 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH-----HHT-SEEE
T ss_pred             cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc-----cccceEEE
Confidence            68999999999999998753  2468899999999998888873        677788777533321     11599988


Q ss_pred             EeCCc---------------cc--cHHHHHHHHhcccCCeEEEEeccc
Q 029414          109 VDADK---------------DN--YCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       109 id~~~---------------~~--~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ...+.               ..  ...+++ +.+.++| -++++.|+.
T Consensus        67 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~-~v~~~~P-k~~~~ENV~  112 (335)
T PF00145_consen   67 GGPPCQGFSIAGKRKGFDDPRNSLFFEFLR-IVKELKP-KYFLLENVP  112 (335)
T ss_dssp             EE---TTTSTTSTHHCCCCHTTSHHHHHHH-HHHHHS--SEEEEEEEG
T ss_pred             eccCCceEeccccccccccccchhhHHHHH-HHhhccc-eEEEecccc
Confidence            76430               01  123333 3466788 567778874

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=91.23  E-value=1.7  Score=31.33  Aligned_cols=94  Identities=17%  Similarity=0.229  Sum_probs=52.3

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHh-HHHHHHHcCCCCcEE-EEecchHHHHHHHhhcCCCCCce
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI-GLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~-a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      +++.+-+|+..-. ...+|.... ..++.++|.++-.++. .+         +++. +...   ++...+..   ..++|
T Consensus         2 ~~~g~V~GS~~Pw-vEv~aL~~G-A~~iltveyn~L~i~~~~~---------dr~ssi~p~---df~~~~~~---y~~~f   64 (177)
T PF03269_consen    2 GKSGLVVGSMQPW-VEVMALQHG-AAKILTVEYNKLEIQEEFR---------DRLSSILPV---DFAKNWQK---YAGSF   64 (177)
T ss_pred             CceEEEEecCCch-hhHHHHHcC-CceEEEEeecccccCcccc---------cccccccHH---HHHHHHHH---hhccc
Confidence            5678888887443 333444433 5689999987632211 11         1111 1112   22222211   15789


Q ss_pred             eEEEEeCC--------------ccccHHHHHHHHhcccCCeEEEEec
Q 029414          105 DYAFVDAD--------------KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       105 D~i~id~~--------------~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |++.+-+.              +......+..+...||+||.+++.-
T Consensus        65 D~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v  111 (177)
T PF03269_consen   65 DFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV  111 (177)
T ss_pred             hhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence            98753321              2234566777889999999999853

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=91.21  E-value=3.7  Score=33.37  Aligned_cols=103  Identities=17%  Similarity=0.269  Sum_probs=58.1

Q ss_pred             HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec--chHHHHHHHhhcCC
Q 029414           23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE   99 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~~   99 (194)
                      ...++.+||-.|+|. |..+..+|+... ..++++++.+++..+.+++    .+...-+.....  +..+.+..+.    
T Consensus       184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~----  254 (369)
T cd08301         184 KVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT----  254 (369)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh----
Confidence            345678899888642 345556677643 2379999999887777644    343211211110  1222222221    


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEecc
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  138 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  138 (194)
                       .+.+|+++ |...  ....+..+++.++++ |.++.-..
T Consensus       255 -~~~~d~vi-d~~G--~~~~~~~~~~~~~~~~g~~v~~g~  290 (369)
T cd08301         255 -GGGVDYSF-ECTG--NIDAMISAFECVHDGWGVTVLLGV  290 (369)
T ss_pred             -CCCCCEEE-ECCC--ChHHHHHHHHHhhcCCCEEEEECc
Confidence             23689665 4321  134566677889996 89887543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=91.13  E-value=4  Score=33.21  Aligned_cols=102  Identities=21%  Similarity=0.331  Sum_probs=58.2

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec--chHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~~~  100 (194)
                      ..++.+||-+|+| .|..+..+|+... ..+|++++.+++..+.+++    .+...-+.....  +..+.+..+.     
T Consensus       182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~-----  251 (365)
T cd08277         182 VEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT-----  251 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh-----
Confidence            4467889888874 2445566777653 2379999998887777653    343211111111  1122222221     


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEecc
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  138 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  138 (194)
                      .+.+|+++- ...  ....+..+++.++++ |.++.-..
T Consensus       252 ~~g~d~vid-~~g--~~~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         252 GGGVDYSFE-CTG--NADLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             CCCCCEEEE-CCC--ChHHHHHHHHhcccCCCEEEEEcC
Confidence            246897773 321  124567788999885 88876443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.06  E-value=1.1  Score=36.97  Aligned_cols=85  Identities=21%  Similarity=0.167  Sum_probs=51.1

Q ss_pred             CeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCCCce
Q 029414           28 KKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSF  104 (194)
Q Consensus        28 ~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~f  104 (194)
                      ++||-||||. |...++...... ..+|+..|.+++..+.+.....     .+++..+-|+.+.  +..+      -..+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~-d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~l------i~~~   69 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNG-DGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVAL------IKDF   69 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHH------HhcC
Confidence            5799999953 333333322222 3799999999887777665532     2677777666543  3333      2557


Q ss_pred             eEEEEeCCccccHHHHHHHH
Q 029414          105 DYAFVDADKDNYCNYHERLM  124 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~  124 (194)
                      |+|+.-.+......+++.|.
T Consensus        70 d~VIn~~p~~~~~~i~ka~i   89 (389)
T COG1748          70 DLVINAAPPFVDLTILKACI   89 (389)
T ss_pred             CEEEEeCCchhhHHHHHHHH
Confidence            98887665444445555443

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=91.03  E-value=6.6  Score=31.42  Aligned_cols=99  Identities=14%  Similarity=0.140  Sum_probs=55.3

Q ss_pred             cCCCeEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           25 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        25 ~~~~~vLeiG~G-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      .++.+|+-.|+| .|..+..+|+..  +.+ +++++.+++..+.+++    .+...-+.....+..+.+..+.    ..+
T Consensus       160 ~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~----~~~  229 (340)
T TIGR00692       160 ISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT----DGE  229 (340)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc----CCC
Confidence            355677666654 355666677764  444 8888777655554443    2432112222233333333331    135


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+|+++-....   ...+..+++.|+++|.++.-
T Consensus       230 ~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~  260 (340)
T TIGR00692       230 GVDVFLEMSGA---PKALEQGLQAVTPGGRVSLL  260 (340)
T ss_pred             CCCEEEECCCC---HHHHHHHHHhhcCCCEEEEE
Confidence            68988753221   24567788999999998874

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=90.98  E-value=3.6  Score=27.94  Aligned_cols=89  Identities=15%  Similarity=0.064  Sum_probs=56.4

Q ss_pred             HHHHHcCCCeEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcC
Q 029414           20 MLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   98 (194)
Q Consensus        20 ~l~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~   98 (194)
                      -+++....++|+|+|.|.=. .+..+++.   +.-++++|+++..          .  +..++++..|....--.+    
T Consensus         7 ~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~~----------a--~~g~~~v~DDitnP~~~i----   67 (129)
T COG1255           7 YIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEKT----------A--PEGLRFVVDDITNPNISI----   67 (129)
T ss_pred             HHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEeccccc----------C--cccceEEEccCCCccHHH----
Confidence            45556677799999997643 45556654   5689999998751          1  135788887765532222    


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccC
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKV  129 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~  129 (194)
                        -...|+|+.-.+.++....+-.+.+.++.
T Consensus        68 --Y~~A~lIYSiRpppEl~~~ildva~aVga   96 (129)
T COG1255          68 --YEGADLIYSIRPPPELQSAILDVAKAVGA   96 (129)
T ss_pred             --hhCccceeecCCCHHHHHHHHHHHHhhCC
Confidence              25689999776655555554445455443

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=90.94  E-value=4.5  Score=32.86  Aligned_cols=100  Identities=21%  Similarity=0.241  Sum_probs=56.1

Q ss_pred             cCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .++.+||-.|+| .|..+..+|+..+ ...+++++.+++..+.+++    .+...-+.....+..+.+....    ....
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~~~  256 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT----GGRG  256 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh----CCCC
Confidence            456678777664 4556666777643 2338888888776665543    2432111111122222222221    1356


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|+|+- .....  ..+..+++.|+++|.++.-
T Consensus       257 ~d~vld-~vg~~--~~~~~~~~~l~~~G~~v~~  286 (367)
T cd08263         257 VDVVVE-ALGKP--ETFKLALDVVRDGGRAVVV  286 (367)
T ss_pred             CCEEEE-eCCCH--HHHHHHHHHHhcCCEEEEE
Confidence            998874 32211  3567788999999998863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=90.84  E-value=2.5  Score=34.94  Aligned_cols=110  Identities=15%  Similarity=0.143  Sum_probs=74.0

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhH-------HHHHHHcCC-CCcEEEEecchHH--HHHH
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG-------LPIIKKAGV-DHKINFIESEALS--VLDQ   93 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a-------~~~~~~~~~-~~~v~~~~~d~~~--~~~~   93 (194)
                      ..+...-.|+|+|.|......|.... ...=+++|+.+..-+.+       ++...-+|- +..++.+++++..  ....
T Consensus       190 ~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e  268 (419)
T KOG3924|consen  190 LGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE  268 (419)
T ss_pred             cCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH
Confidence            44567899999999999888887654 55667888766544333       222233444 3567888888755  2333


Q ss_pred             HhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhcccCCeEEEEecccc
Q 029414           94 LLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      +      ...-++||++-..  ++..--++.++..+++|-.|+-...+.
T Consensus       269 I------~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~  311 (419)
T KOG3924|consen  269 I------QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLV  311 (419)
T ss_pred             H------hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccccc
Confidence            3      3568899988653  333334568889999999999877664

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=90.82  E-value=0.51  Score=35.89  Aligned_cols=59  Identities=12%  Similarity=-0.017  Sum_probs=46.5

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      ..-|.|||.|.|..+..+..+.  -.++..+|.++.++.-.+-..+.+  +.+..+.++|+..
T Consensus        51 ~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR  109 (326)
T KOG0821|consen   51 NAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLR  109 (326)
T ss_pred             cceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcC--CcceEEeccccce
Confidence            3579999999999999998763  468999999998888777655533  3478888888764

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=90.70  E-value=7.4  Score=31.66  Aligned_cols=96  Identities=20%  Similarity=0.226  Sum_probs=54.2

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .++++||-.|+|. |..++.+|+..  +.++++++.+++....+.   .+.|..   .++.....+.+...      .+.
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~~---~~~Ga~---~vi~~~~~~~~~~~------~~~  247 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEAI---NRLGAD---SFLVSTDPEKMKAA------IGT  247 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhHH---HhCCCc---EEEcCCCHHHHHhh------cCC
Confidence            3567888888752 45666677764  467888887765433222   223432   12211111222222      235


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +|+++ |...  ....++.+++.++++|.++.-.
T Consensus       248 ~D~vi-d~~g--~~~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        248 MDYII-DTVS--AVHALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             CCEEE-ECCC--CHHHHHHHHHHhcCCcEEEEeC
Confidence            89777 4322  2235677889999999998643

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=90.60  E-value=4.4  Score=30.19  Aligned_cols=80  Identities=15%  Similarity=0.162  Sum_probs=43.6

Q ss_pred             CCCeEEEEcccc-cHHH-HHHHhhCCCCCEEEEEeCCcc-------------------hHHhHHHHHHHcCCCCcEEEEe
Q 029414           26 NAKKTIEIGVFT-GYSL-LLTALTIPEDGQITAIDVNRE-------------------TYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~-~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      +..+|+-+|||. |... ..|+.. + -++++.+|.+.-                   ..+.+++++.+.+..-+++...
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~-G-Vg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~   97 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLS-G-IGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT   97 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHc-C-CCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence            457899999874 3322 223332 2 478999887532                   2344566666554333444444


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCc
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADK  113 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~  113 (194)
                      ....+..+.+      ...||+|+.....
T Consensus        98 ~~~~~~~~~~------~~~~dvVi~~~~~  120 (197)
T cd01492          98 DDISEKPEEF------FSQFDVVVATELS  120 (197)
T ss_pred             cCccccHHHH------HhCCCEEEECCCC
Confidence            4333322333      2579998876543

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=90.55  E-value=9.3  Score=31.99  Aligned_cols=105  Identities=17%  Similarity=0.189  Sum_probs=56.1

Q ss_pred             CeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhc-----CCCC
Q 029414           28 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY-----SENE  101 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-----~~~~  101 (194)
                      ++|.-||.|.  .+..+|..+. .+.+|+++|.+++.++..+.     +   .+.+...+..+.+......     ....
T Consensus         4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-----g---~~~~~e~~l~~~l~~~~~~g~l~~~~~~   73 (415)
T PRK11064          4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTINR-----G---EIHIVEPDLDMVVKTAVEGGYLRATTTP   73 (415)
T ss_pred             cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-----C---CCCcCCCCHHHHHHHHhhcCceeeeccc
Confidence            5678888764  3333333321 25789999999987764321     1   1122222222222211000     0001


Q ss_pred             CceeEEEEeCCc----------cccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          102 GSFDYAFVDADK----------DNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       102 ~~fD~i~id~~~----------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      +.-|+||+..+.          .......+.+.+.+++|.++|...+..+|
T Consensus        74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg  124 (415)
T PRK11064         74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG  124 (415)
T ss_pred             ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence            256888877653          23445567777889988888776655444

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.48  E-value=4.8  Score=33.38  Aligned_cols=107  Identities=14%  Similarity=0.141  Sum_probs=62.9

Q ss_pred             CeEEEEc---ccccHHHHHHHhhCCC---CCEEEEEeC-CcchHHhHHHHHHHcCCCCcEEEEecchHHHH----HHHhh
Q 029414           28 KKTIEIG---VFTGYSLLLTALTIPE---DGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEALSVL----DQLLK   96 (194)
Q Consensus        28 ~~vLeiG---~G~G~~~~~la~~~~~---~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~   96 (194)
                      ..|+=+|   +|--.+..-+|..+..   ..-++|-|. -+.+.+..+.+..+.++|--...-..|...+.    ..+. 
T Consensus       102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK-  180 (483)
T KOG0780|consen  102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK-  180 (483)
T ss_pred             cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH-
Confidence            3455554   3333444556655532   234677775 44577888888887776522233334443332    2222 


Q ss_pred             cCCCCCceeEEEEeCC--ccccHHH---HHHHHhcccCCeEEEEeccc
Q 029414           97 YSENEGSFDYAFVDAD--KDNYCNY---HERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~--~~~~~~~---~~~~~~~L~~gG~lv~~~~~  139 (194)
                          .+.||+|++|-.  +..-...   +..+.+.++|+-+|.+-|..
T Consensus       181 ----ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas  224 (483)
T KOG0780|consen  181 ----KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS  224 (483)
T ss_pred             ----hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence                478999999965  2222333   45566899999988886654

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=90.18  E-value=6.8  Score=29.81  Aligned_cols=80  Identities=13%  Similarity=0.130  Sum_probs=44.8

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEec
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      ...+|+-+|||. |...+..+...+ -++++.+|.+.                   ...+.+++++.+....-+++.+..
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~   98 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE   98 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence            457899999974 443333333333 57888887644                   233455666665543224555544


Q ss_pred             ch-HHHHHHHhhcCCCCCceeEEEEeCC
Q 029414           86 EA-LSVLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        86 d~-~~~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      .. .+....+      ...+|+|+...+
T Consensus        99 ~i~~~~~~~~------~~~~DvVi~~~d  120 (228)
T cd00757          99 RLDAENAEEL------IAGYDLVLDCTD  120 (228)
T ss_pred             eeCHHHHHHH------HhCCCEEEEcCC
Confidence            43 1222333      256999887655

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=90.15  E-value=7.4  Score=32.39  Aligned_cols=124  Identities=15%  Similarity=0.134  Sum_probs=68.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .++...++-..++.......++-+++|+......+...+.++.+|+..+. .........+.+...+.  ++.++..+..
T Consensus        68 ~~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~--~v~~vd~~d~  145 (403)
T PRK07810         68 GNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV--ETVFVDGEDL  145 (403)
T ss_pred             CCchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc--EEEEECCCCH
Confidence            34556677777777777778999999888766655444555777777653 22334444555555554  4555544322


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEecccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTLW  140 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  140 (194)
                      +.+....     .+.-.+|++..+  .......++.+.++.+. |-.+++|++..
T Consensus       146 ~~l~~ai-----~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a  195 (403)
T PRK07810        146 SQWEEAL-----SVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFA  195 (403)
T ss_pred             HHHHHhc-----CcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence            3333321     234678887643  11111224444444444 44566666643

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=90.14  E-value=6.1  Score=31.67  Aligned_cols=100  Identities=14%  Similarity=0.177  Sum_probs=57.0

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch---HHHHHHHhhcC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA---LSVLDQLLKYS   98 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~   98 (194)
                      ..++.+||-.|+|. |..++.+|+..  +.+ ++.++.+++..+.+++    .+...-+.....+.   .+.+....   
T Consensus       160 ~~~g~~vlI~g~g~vG~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~---  230 (343)
T cd05285         160 VRPGDTVLVFGAGPIGLLTAAVAKAF--GATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL---  230 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh---
Confidence            44567887777654 66777788875  344 8888887776665543    23221111111121   12222221   


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                       ....+|+|+-....   ...+...++.|+++|.++.-
T Consensus       231 -~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  264 (343)
T cd05285         231 -GGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVLV  264 (343)
T ss_pred             -CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence             12459987743221   22567788999999998864

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=90.11  E-value=4.3  Score=33.32  Aligned_cols=101  Identities=14%  Similarity=0.106  Sum_probs=56.0

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec---chHHHHHHHhhcCCC
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSEN  100 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~~~  100 (194)
                      ..+.+||-.|+|. |..++.+|+..+ ..++++++.+++..+.+++    .+...-+.....   +..+.+..+.    .
T Consensus       202 ~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~----~  272 (384)
T cd08265         202 RPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT----K  272 (384)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc----C
Confidence            3566787777642 334555666643 2379999888775544443    354211111111   2222222321    1


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ...+|+|+ |... .....+..+++.|+++|.++.-
T Consensus       273 g~gvDvvl-d~~g-~~~~~~~~~~~~l~~~G~~v~~  306 (384)
T cd08265         273 GWGADIQV-EAAG-APPATIPQMEKSIAINGKIVYI  306 (384)
T ss_pred             CCCCCEEE-ECCC-CcHHHHHHHHHHHHcCCEEEEE
Confidence            24699776 4422 2235677888999999999864

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=90.04  E-value=5  Score=28.05  Aligned_cols=34  Identities=18%  Similarity=0.181  Sum_probs=27.6

Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ..||+||+.....+..+.++.+.+.+.++..+++
T Consensus        66 ~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~   99 (151)
T PF02558_consen   66 GPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVS   99 (151)
T ss_dssp             STESEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred             CCCcEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence            7899999987666778889999999999966665

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd05281 TDH Threonine dehydrogenase

Probab=89.90  E-value=8.8  Score=30.72  Aligned_cols=99  Identities=20%  Similarity=0.170  Sum_probs=53.8

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .++.+||-.|+|. |..+..+|+..+ ..++++++.+++..+.+++    .+...-+.....+.. .+..+.    ..+.
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~----~~~~  231 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAG-ASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT----DGTG  231 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc----CCCC
Confidence            3556777766543 556666777653 2268888666655544443    343211111122222 222221    1357


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|+++-....   ......+++.|+++|.++.-
T Consensus       232 vd~vld~~g~---~~~~~~~~~~l~~~G~~v~~  261 (341)
T cd05281         232 VDVVLEMSGN---PKAIEQGLKALTPGGRVSIL  261 (341)
T ss_pred             CCEEEECCCC---HHHHHHHHHHhccCCEEEEE
Confidence            8988753221   23466778999999998863

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=89.87  E-value=2.8  Score=33.50  Aligned_cols=96  Identities=18%  Similarity=0.261  Sum_probs=55.7

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ++.+||-.|+|. |..+..+|+..+ -.++++++.+++..+.+++    .+..   .++..+... +..+..   ..+.+
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~---~~~~v  232 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA---DKGDF  232 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc---cCCCc
Confidence            567888888764 566677777653 2278899888776665443    2322   122111111 111111   12459


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+++-....   ...++.+++.|+++|.++.-
T Consensus       233 d~vld~~g~---~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         233 DVVFEASGA---PAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             cEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence            988753221   23567788999999999863

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK08114 cystathionine beta-lyase; Provisional

Probab=89.72  E-value=11  Score=31.45  Aligned_cols=127  Identities=10%  Similarity=0.067  Sum_probs=73.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .+|-...+=..++.+..+...+-+.+|++.....+...+.++.+|++.+. ........++.+++.|.  ++.++.....
T Consensus        60 ~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~  137 (395)
T PRK08114         60 GTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIG  137 (395)
T ss_pred             CChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCH
Confidence            34555666666777777788999999888777655545555778887653 33445555566666665  4666543322


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcc---cCCeEEEEeccccccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLL---KVGGIAVYDNTLWGGT  143 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L---~~gG~lv~~~~~~~g~  143 (194)
                      +.+....     .+.-.+|++...  ..-....++.+.+..   .+|-.+++|++...+.
T Consensus       138 ~~l~~~l-----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~  192 (395)
T PRK08114        138 ADIAKLI-----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGV  192 (395)
T ss_pred             HHHHHhc-----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence            3333321     234578998865  111112233333333   3456788888765443

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=89.59  E-value=4.3  Score=32.32  Aligned_cols=77  Identities=16%  Similarity=0.118  Sum_probs=43.1

Q ss_pred             eEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcc-------------------hHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           29 KTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRE-------------------TYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        29 ~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      +||-+|+| .|...+......+ -++++.+|.+.-                   ..+.|.+++.+....-+++.+..+..
T Consensus         1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~   79 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ   79 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence            47888986 3443333322223 578888886441                   22345556655443335666666654


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      +.-..+      -.+||+|+...+
T Consensus        80 ~~~~~f------~~~fdvVi~alD   97 (291)
T cd01488          80 DKDEEF------YRQFNIIICGLD   97 (291)
T ss_pred             chhHHH------hcCCCEEEECCC
Confidence            433343      367999887544

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=89.59  E-value=5.6  Score=33.97  Aligned_cols=102  Identities=18%  Similarity=0.136  Sum_probs=54.0

Q ss_pred             eEEEEcccccHHHHH--HHhhCCCCCEEEEEeCCcchHHhHHHHHHH---cCCC--------CcEEEEecchHHHHHHHh
Q 029414           29 KTIEIGVFTGYSLLL--TALTIPEDGQITAIDVNRETYEIGLPIIKK---AGVD--------HKINFIESEALSVLDQLL   95 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~--la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~~--------~~v~~~~~d~~~~~~~~~   95 (194)
                      +|.-+|+|....+..  ||.... +.+|+++|.+++.++..++....   .++.        .+.++- .|..+.     
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~-g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~~~-----   75 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCP-DIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVEKH-----   75 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCC-CCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHHHH-----
Confidence            577788765443333  333211 36799999999887765433210   0100        011111 111111     


Q ss_pred             hcCCCCCceeEEEEeCC--c---------c----ccHHHHHHHHhcccCCeEEEEecccccc
Q 029414           96 KYSENEGSFDYAFVDAD--K---------D----NYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~--~---------~----~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                           -..-|++|+.-+  .         .    ....+.+.+.+.|++|-++++..+...|
T Consensus        76 -----i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G  132 (473)
T PLN02353         76 -----VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK  132 (473)
T ss_pred             -----HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence                 134677877532  1         1    2345556667788888888887776655

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=89.58  E-value=11  Score=31.19  Aligned_cols=80  Identities=19%  Similarity=0.230  Sum_probs=43.5

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEec
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +..+|+-+|||. |...+..+...+ -++++.+|.+.                   ...+.+++++.+....-+++.+..
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~G-vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~  118 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAG-VGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE  118 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence            467899999984 433333322322 57899998763                   123445666655442223444443


Q ss_pred             chHH-HHHHHhhcCCCCCceeEEEEeCC
Q 029414           86 EALS-VLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        86 d~~~-~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      ...+ ....+      -..+|+|+...+
T Consensus       119 ~i~~~~~~~~------~~~~DlVid~~D  140 (370)
T PRK05600        119 RLTAENAVEL------LNGVDLVLDGSD  140 (370)
T ss_pred             ecCHHHHHHH------HhCCCEEEECCC
Confidence            3322 22333      256998875544

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=89.46  E-value=2.6  Score=33.54  Aligned_cols=88  Identities=18%  Similarity=0.106  Sum_probs=48.3

Q ss_pred             CeEEEEcccccHHHHHHHhhCCC-C--CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPE-D--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~-~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .+|.-||+|.  .+..++..+.. +  .+|+++|.+++..+.+++    .+..  ... ..+..+    .      ....
T Consensus         7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~--~~~-~~~~~~----~------~~~a   67 (307)
T PRK07502          7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLG--DRV-TTSAAE----A------VKGA   67 (307)
T ss_pred             cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCC--cee-cCCHHH----H------hcCC
Confidence            4688888764  33333322211 2  379999999877665543    2321  111 112111    1      1457


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEE
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  134 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  134 (194)
                      |+|++..+......+++.+...+++|.+++
T Consensus        68 DvViiavp~~~~~~v~~~l~~~l~~~~iv~   97 (307)
T PRK07502         68 DLVILCVPVGASGAVAAEIAPHLKPGAIVT   97 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            888887655445556666667777776543

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=89.42  E-value=6.5  Score=31.96  Aligned_cols=100  Identities=21%  Similarity=0.354  Sum_probs=56.9

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec--chHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~~~  100 (194)
                      ..++.+||-.|+|. |..+..+|+..+ ...+++++.+++..+.+++    .+....+.....  +..+.+..+.     
T Consensus       181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~-----  250 (365)
T cd05279         181 VTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT-----  250 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh-----
Confidence            34567888887642 345555676653 2358888888877766643    343212222222  2222222221     


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhccc-CCeEEEEe
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLK-VGGIAVYD  136 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~-~gG~lv~~  136 (194)
                      .+.+|+++ +...  ....+..+++.++ ++|.++.-
T Consensus       251 ~~~~d~vi-d~~g--~~~~~~~~~~~l~~~~G~~v~~  284 (365)
T cd05279         251 DGGVDYAF-EVIG--SADTLKQALDATRLGGGTSVVV  284 (365)
T ss_pred             CCCCcEEE-ECCC--CHHHHHHHHHHhccCCCEEEEE
Confidence            24699887 4321  1345677889999 99999864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PRK06940 short chain dehydrogenase; Provisional

Probab=89.39  E-value=5  Score=31.23  Aligned_cols=81  Identities=19%  Similarity=0.183  Sum_probs=47.9

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCCCcee
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFD  105 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~fD  105 (194)
                      +.+|-.|+  |..+..+++.+..+.+|+.++.+++.++...+.+...+  .++.++..|..+.  ...+.....+.+.+|
T Consensus         3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            45666664  46777777777657889999988776665555554433  2566777665331  122111101135789


Q ss_pred             EEEEeCC
Q 029414          106 YAFVDAD  112 (194)
Q Consensus       106 ~i~id~~  112 (194)
                      .++..+.
T Consensus        79 ~li~nAG   85 (275)
T PRK06940         79 GLVHTAG   85 (275)
T ss_pred             EEEECCC
Confidence            8887654

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=89.32  E-value=5.7  Score=30.52  Aligned_cols=77  Identities=19%  Similarity=0.207  Sum_probs=40.9

Q ss_pred             eEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcc-------------------hHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           29 KTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRE-------------------TYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        29 ~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      +||-+|+| .|...+......+ -++++.+|.+.-                   ..+.+++++.+....-++..+..+..
T Consensus         1 kVlvvG~GGlG~eilk~La~~G-vg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~   79 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMG-FGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            47888886 3433333222222 578888887542                   12344555555443334555655542


Q ss_pred             ---HHHHHHhhcCCCCCceeEEEEeCC
Q 029414           89 ---SVLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        89 ---~~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                         +....+      -.+||+|+...+
T Consensus        80 ~~~~~~~~f------~~~~DvVi~a~D  100 (234)
T cd01484          80 PEQDFNDTF------FEQFHIIVNALD  100 (234)
T ss_pred             hhhhchHHH------HhCCCEEEECCC
Confidence               222233      267999987655

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=89.25  E-value=7.9  Score=30.89  Aligned_cols=109  Identities=11%  Similarity=0.140  Sum_probs=65.4

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC--CCcEEEEecchH-H-HHHHHhhcCCCCC
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEAL-S-VLDQLLKYSENEG  102 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~-~-~~~~~~~~~~~~~  102 (194)
                      ...|+-+|||-  .|...---.+++.++.-+|+ |+.++.=++.+...+.  +..++.+..|.. + +...+........
T Consensus        93 ~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          93 IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             ccEEEEecccc--ccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            57899999954  44443322233455665665 5666665566666553  246788888877 3 3444432211122


Q ss_pred             ceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          103 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       103 ~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ..-++++.+.     .+....+++.+..+..||..+++.-.
T Consensus       170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~  210 (297)
T COG3315         170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS  210 (297)
T ss_pred             CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence            3344554443     45667889999999999888888643

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=89.08  E-value=0.54  Score=34.02  Aligned_cols=44  Identities=16%  Similarity=0.039  Sum_probs=31.6

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHH
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLP   69 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~   69 (194)
                      ..+|.+|+-+|.|. |..+..++..+  +.+++.+|..+...+..+.
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~   61 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLES   61 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhc
Confidence            34678999999985 66788888886  5799999998876665443

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=88.99  E-value=1.7  Score=38.22  Aligned_cols=93  Identities=9%  Similarity=-0.016  Sum_probs=58.3

Q ss_pred             CeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCce
Q 029414           28 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF  104 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~f  104 (194)
                      .+|+=+|+  |..+..+++.+. .+..++.+|.|++.++.+++    .    ...++.||+.+  .+.+.     .-++.
T Consensus       401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~a-----gi~~A  465 (601)
T PRK03659        401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y----GYKVYYGDATQLELLRAA-----GAEKA  465 (601)
T ss_pred             CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C----CCeEEEeeCCCHHHHHhc-----CCccC
Confidence            35666665  666666665542 25689999999998887764    2    35678888765  33332     13578


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      |++++-.+........-...+.+.|+..+++
T Consensus       466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia  496 (601)
T PRK03659        466 EAIVITCNEPEDTMKIVELCQQHFPHLHILA  496 (601)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence            8887765433333333334466778877776

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=88.95  E-value=1.7  Score=34.74  Aligned_cols=114  Identities=17%  Similarity=0.175  Sum_probs=67.7

Q ss_pred             CeEEEEcccccHHHHHHHhhC----C---------------CCCEEEEEeCCcc--hHHhHHHHHHHc------------
Q 029414           28 KKTIEIGVFTGYSLLLTALTI----P---------------EDGQITAIDVNRE--TYEIGLPIIKKA------------   74 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~----~---------------~~~~v~~iD~~~~--~~~~a~~~~~~~------------   74 (194)
                      .+||-||.|.|.-...+|..+    .               +...++.+|+.+-  .+......+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            699999999988766666655    0               1248999999663  333333333322            


Q ss_pred             -CC-C--CcEEEEecchHHHHH-HHhhcCCCCCceeEEEE--------eCCccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414           75 -GV-D--HKINFIESEALSVLD-QLLKYSENEGSFDYAFV--------DADKDNYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus        75 -~~-~--~~v~~~~~d~~~~~~-~~~~~~~~~~~fD~i~i--------d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                       .. +  -+++|.+.|....-. ++... -..+..++|-+        ........+++..+-..++||.++++-|  .+
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~l-l~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD--Sp  244 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSL-LGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD--SP  244 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHH-hccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc--CC
Confidence             00 1  246788888765322 11000 00123555521        1125667889999999999999999855  44


Q ss_pred             ccc
Q 029414          142 GTV  144 (194)
Q Consensus       142 g~~  144 (194)
                      |.+
T Consensus       245 GSY  247 (315)
T PF11312_consen  245 GSY  247 (315)
T ss_pred             CCc
Confidence            443

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=88.94  E-value=9  Score=29.72  Aligned_cols=97  Identities=14%  Similarity=0.144  Sum_probs=58.6

Q ss_pred             HHHcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc---hHHHHHHHhh
Q 029414           22 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLK   96 (194)
Q Consensus        22 ~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~   96 (194)
                      ....++.+||-.|+  +.|..+..+++..  +.++++++.+++..+.+++    .+..   .++..+   ..+.+..+. 
T Consensus       132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~-  201 (320)
T cd05286         132 YPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREIT-  201 (320)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHc-
Confidence            33446788998884  4667777788775  5788888887776665533    3432   222222   222222221 


Q ss_pred             cCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414           97 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                         ....+|+++- ....   .....+++.++++|.++.
T Consensus       202 ---~~~~~d~vl~-~~~~---~~~~~~~~~l~~~g~~v~  233 (320)
T cd05286         202 ---GGRGVDVVYD-GVGK---DTFEGSLDSLRPRGTLVS  233 (320)
T ss_pred             ---CCCCeeEEEE-CCCc---HhHHHHHHhhccCcEEEE
Confidence               1246998874 3221   356677899999999885

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=88.94  E-value=2.5  Score=34.31  Aligned_cols=96  Identities=11%  Similarity=-0.022  Sum_probs=54.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHH-HcCC------CCcEEEEecchHHHHHHHhhcC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGV------DHKINFIESEALSVLDQLLKYS   98 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~------~~~v~~~~~d~~~~~~~~~~~~   98 (194)
                      ...+|.-+|+|.-..+  +|..+...+.++....+++..+..++.-. ...+      +.++... .|..+.   +    
T Consensus         6 ~~mkI~IiGaGa~G~a--lA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t-~d~~~a---~----   75 (341)
T PRK12439          6 REPKVVVLGGGSWGTT--VASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRAT-TDFAEA---A----   75 (341)
T ss_pred             CCCeEEEECCCHHHHH--HHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEE-CCHHHH---H----
Confidence            4467999998654433  33222223467777777776665554210 0111      1122222 232221   1    


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEE
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV  134 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv  134 (194)
                         ...|+|++..+.......++.+.+.++++..++
T Consensus        76 ---~~aDlVilavps~~~~~vl~~i~~~l~~~~~vI  108 (341)
T PRK12439         76 ---NCADVVVMGVPSHGFRGVLTELAKELRPWVPVV  108 (341)
T ss_pred             ---hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence               467999988776677888888888888876444

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.76  E-value=5.4  Score=31.45  Aligned_cols=96  Identities=16%  Similarity=0.091  Sum_probs=54.1

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc--------CCC---------CcEEEEecchHHH
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--------GVD---------HKINFIESEALSV   90 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------~~~---------~~v~~~~~d~~~~   90 (194)
                      ++|.-||+|.=..++....... +.+|+.+|.+++.++.+++.+...        .+.         .++++. .|..+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence            4688889875333222222112 568999999999888887664321        110         123322 222221


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhcccCCeEEEE
Q 029414           91 LDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                                ...-|+|+...+.  ......++.+.+.++++.+|+.
T Consensus        82 ----------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s  118 (287)
T PRK08293         82 ----------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT  118 (287)
T ss_pred             ----------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence                      1456888876542  2345667777777777665544

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.72  E-value=6.9  Score=31.59  Aligned_cols=108  Identities=18%  Similarity=0.249  Sum_probs=63.7

Q ss_pred             HHHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE--ecchHHHHHHHhhcC
Q 029414           22 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYS   98 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~~~   98 (194)
                      +...++.++.-+|.|. |...+.-|+... .++++++|++++-.+.|++.    |..+-+...  .....+.+.+..   
T Consensus       188 Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~EmT---  259 (375)
T KOG0022|consen  188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEMT---  259 (375)
T ss_pred             cccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHHh---
Confidence            4455678888888865 333333444443 68999999999999988864    432222211  123445444432   


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEecccccc
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNTLWGG  142 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~~~~g  142 (194)
                        ++.+|+-|=..   ...+.+.+++...+.| |.-++-.+...+
T Consensus       260 --dgGvDysfEc~---G~~~~m~~al~s~h~GwG~sv~iGv~~~~  299 (375)
T KOG0022|consen  260 --DGGVDYSFECI---GNVSTMRAALESCHKGWGKSVVIGVAAAG  299 (375)
T ss_pred             --cCCceEEEEec---CCHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence              47889888332   1234455666666677 766664444333

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=88.66  E-value=1.6  Score=37.97  Aligned_cols=94  Identities=7%  Similarity=-0.025  Sum_probs=58.3

Q ss_pred             CeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCCCce
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSF  104 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~f  104 (194)
                      .+++-+|+  |..+..+++.+.+ +..++.+|.|++..+.+++.        ....+.||+.+.  +.+.     +-++.
T Consensus       418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a-----~i~~a  482 (558)
T PRK10669        418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLA-----HLDCA  482 (558)
T ss_pred             CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhc-----Ccccc
Confidence            45666666  6677777776532 46899999999887776642        467888887652  3332     13578


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |.+++.-...+....+-.+.+...|+..++..
T Consensus       483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar  514 (558)
T PRK10669        483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIAR  514 (558)
T ss_pred             CEEEEEcCChHHHHHHHHHHHHHCCCCeEEEE
Confidence            88876543222222233344666777777763

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=88.63  E-value=8.3  Score=30.77  Aligned_cols=97  Identities=14%  Similarity=0.105  Sum_probs=56.7

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ...+.+||-.|+| .|..+..+|+..  +.+++.++.+++..+.+++    .+...-+.....+..+.+..+       .
T Consensus       161 ~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~-------~  227 (333)
T cd08296         161 AKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQEL-------G  227 (333)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhc-------C
Confidence            4456788888853 244555667764  4579999988777766643    343211111112222222221       3


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+|+++- ..  .....++.+++.++++|.++.-
T Consensus       228 ~~d~vi~-~~--g~~~~~~~~~~~l~~~G~~v~~  258 (333)
T cd08296         228 GAKLILA-TA--PNAKAISALVGGLAPRGKLLIL  258 (333)
T ss_pred             CCCEEEE-CC--CchHHHHHHHHHcccCCEEEEE
Confidence            5898873 31  1234677788999999999864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=88.60  E-value=3.7  Score=34.48  Aligned_cols=103  Identities=21%  Similarity=0.305  Sum_probs=59.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH---cCC-----CCcEEEEecchHHHHHHHhhc
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGV-----DHKINFIESEALSVLDQLLKY   97 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~-----~~~v~~~~~d~~~~~~~~~~~   97 (194)
                      ++.+|--||.  |+.++.+|..+..+..|+++|++++.++..++-...   .++     ..+..+ ..+. +   .    
T Consensus         5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~-t~~~-~---~----   73 (425)
T PRK15182          5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKF-TSEI-E---K----   73 (425)
T ss_pred             CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeE-EeCH-H---H----
Confidence            3466777765  777777777776567899999999887765521100   000     001111 1121 1   1    


Q ss_pred             CCCCCceeEEEEeCCc-------cc---cHHHHHHHHhcccCCeEEEEecccccc
Q 029414           98 SENEGSFDYAFVDADK-------DN---YCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~-------~~---~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                         ...-|++|+.-+.       .+   .....+.+.+.|++|.++|...+..+|
T Consensus        74 ---~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pg  125 (425)
T PRK15182         74 ---IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPG  125 (425)
T ss_pred             ---HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence               1457888876541       12   222235666888998888887666555

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=88.56  E-value=7.4  Score=30.75  Aligned_cols=98  Identities=16%  Similarity=0.181  Sum_probs=58.2

Q ss_pred             cCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           25 VNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        25 ~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      .++.+||-.|.  +.|..+..+|+..  +.++++++.+++..+.+++.+   +...-+.....+..+.+..+.     .+
T Consensus       144 ~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~v~~~~-----~~  213 (329)
T cd05288         144 KPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEEL---GFDAAINYKTPDLAEALKEAA-----PD  213 (329)
T ss_pred             CCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhhc---CCceEEecCChhHHHHHHHhc-----cC
Confidence            35678888884  4677777788874  568999988877666555432   332111211112222222221     24


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+|+++ +...   ...+..+++.++++|.++.-
T Consensus       214 ~~d~vi-~~~g---~~~~~~~~~~l~~~G~~v~~  243 (329)
T cd05288         214 GIDVYF-DNVG---GEILDAALTLLNKGGRIALC  243 (329)
T ss_pred             CceEEE-Ecch---HHHHHHHHHhcCCCceEEEE
Confidence            689776 4322   13577788999999998853

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=88.54  E-value=1.4  Score=35.38  Aligned_cols=66  Identities=9%  Similarity=-0.085  Sum_probs=46.8

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414           30 TIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  108 (194)
Q Consensus        30 vLeiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~  108 (194)
                      |+|+.||.|..++.|-.+   +.+ +.++|+++...+..+.++.      . .++.+|..++...-      .+.+|+++
T Consensus         1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~------~-~~~~~Di~~~~~~~------~~~~dvl~   64 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFG------N-KVPFGDITKISPSD------IPDFDILL   64 (315)
T ss_pred             CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCC------C-CCCccChhhhhhhh------CCCcCEEE
Confidence            589999999999998764   334 5679999988888777762      2 44557776653321      25689887


Q ss_pred             EeC
Q 029414          109 VDA  111 (194)
Q Consensus       109 id~  111 (194)
                      ...
T Consensus        65 gg~   67 (315)
T TIGR00675        65 GGF   67 (315)
T ss_pred             ecC
Confidence            653

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.42  E-value=9.2  Score=30.47  Aligned_cols=81  Identities=19%  Similarity=0.189  Sum_probs=55.6

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-C
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-E   99 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~   99 (194)
                      .++.||--|.|.|-   .++.+|+.   +.+++..|++.+..+...+.++..|   ++..+.+|..+.  ......+. +
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~  110 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK  110 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence            46789999998884   66667775   5689999999999988888888775   677777665321  11111111 2


Q ss_pred             CCCceeEEEEeCC
Q 029414          100 NEGSFDYAFVDAD  112 (194)
Q Consensus       100 ~~~~fD~i~id~~  112 (194)
                      +-+..|+++-++.
T Consensus       111 e~G~V~ILVNNAG  123 (300)
T KOG1201|consen  111 EVGDVDILVNNAG  123 (300)
T ss_pred             hcCCceEEEeccc
Confidence            3578898876654

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=88.32  E-value=11  Score=30.74  Aligned_cols=79  Identities=16%  Similarity=0.195  Sum_probs=44.1

Q ss_pred             CCCeEEEEcccc-cHHH-HHHHhhCCCCCEEEEEeCCc---------------------chHHhHHHHHHHcCCCCcEEE
Q 029414           26 NAKKTIEIGVFT-GYSL-LLTALTIPEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKINF   82 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~-~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~v~~   82 (194)
                      ...+|+-+|||. |... ..|+.. . -++++.+|.+.                     ...+.+++++.+.+..-+++.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~a-G-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~  100 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRA-G-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA  100 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHc-C-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence            557899999984 4433 334433 2 57999999863                     122344556655442223455


Q ss_pred             EecchHH-HHHHHhhcCCCCCceeEEEEeCC
Q 029414           83 IESEALS-VLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        83 ~~~d~~~-~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      +..+... ....+      ...||+|+...+
T Consensus       101 ~~~~~~~~~~~~~------~~~~DlVid~~D  125 (339)
T PRK07688        101 IVQDVTAEELEEL------VTGVDLIIDATD  125 (339)
T ss_pred             EeccCCHHHHHHH------HcCCCEEEEcCC
Confidence            5444322 22333      256998876544

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=88.31  E-value=8.7  Score=31.04  Aligned_cols=99  Identities=17%  Similarity=0.170  Sum_probs=55.0

Q ss_pred             CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH---HHHHHHhhcCCCC
Q 029414           26 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL---SVLDQLLKYSENE  101 (194)
Q Consensus        26 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~~~~~~  101 (194)
                      ++.+||-.|+| .|..+..+|+... -.++++++.+++..+.++    ..+...-+.....+..   ..+....    ..
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~----~~  247 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAG-ARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDIT----GG  247 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHh----CC
Confidence            56678888754 2345566677653 228999988776665543    3354311111111111   1122221    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+|+++-....   ...+..+++.++++|.++.-
T Consensus       248 ~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~  279 (361)
T cd08231         248 RGADVVIEASGH---PAAVPEGLELLRRGGTYVLV  279 (361)
T ss_pred             CCCcEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence            469977743211   23567788999999999864

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=88.22  E-value=9.7  Score=31.49  Aligned_cols=120  Identities=17%  Similarity=0.117  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414           12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   91 (194)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   91 (194)
                      +...++=..++.......++-.++|+......+...+.++.+|+..+..-......-+.+...+.  .+.+...|..++.
T Consensus        53 p~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~--~v~~~~~d~~~l~  130 (385)
T PRK08574         53 PTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGV--KVVLAYPSTEDII  130 (385)
T ss_pred             ccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCc--EEEEECCCHHHHH
Confidence            34555555566666666777788777666555544555577777765543322222222333343  3444444433333


Q ss_pred             HHHhhcCCCCC-ceeEEEEeCCc--cccHHHHHHHHhcccC-CeEEEEeccc
Q 029414           92 DQLLKYSENEG-SFDYAFVDADK--DNYCNYHERLMKLLKV-GGIAVYDNTL  139 (194)
Q Consensus        92 ~~~~~~~~~~~-~fD~i~id~~~--~~~~~~~~~~~~~L~~-gG~lv~~~~~  139 (194)
                      ..+      .+ +..+|++....  ......++.+.++.+. |..+++|++.
T Consensus       131 ~~i------~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~  176 (385)
T PRK08574        131 EAI------KEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTF  176 (385)
T ss_pred             Hhc------CccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCC
Confidence            333      23 57888886431  1111123444444443 5566677764

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=88.17  E-value=2.1  Score=34.22  Aligned_cols=34  Identities=6%  Similarity=0.049  Sum_probs=26.7

Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +.+|+|++........+.++.+.+.+++++.++.
T Consensus        71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~  104 (313)
T PRK06249         71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL  104 (313)
T ss_pred             CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence            6799999976655666778888888999887764

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=88.13  E-value=3.7  Score=32.24  Aligned_cols=85  Identities=14%  Similarity=0.066  Sum_probs=47.5

Q ss_pred             eEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414           29 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  107 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i  107 (194)
                      +|.=||+|  ..+..++..+. .+.+|+++|.+++..+.+++.    +.   +.....+. +   .       ....|+|
T Consensus         2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~-~---~-------~~~aDlV   61 (279)
T PRK07417          2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL---VDEASTDL-S---L-------LKDCDLV   61 (279)
T ss_pred             eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC---cccccCCH-h---H-------hcCCCEE
Confidence            46667765  33333333321 246899999998777665432    21   11111111 1   1       1457888


Q ss_pred             EEeCCccccHHHHHHHHhcccCCeEE
Q 029414          108 FVDADKDNYCNYHERLMKLLKVGGIA  133 (194)
Q Consensus       108 ~id~~~~~~~~~~~~~~~~L~~gG~l  133 (194)
                      ++..+.......++.+.+.++++.++
T Consensus        62 ilavp~~~~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         62 ILALPIGLLLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             EEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence            88776555566677777777765433

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=88.09  E-value=8  Score=29.79  Aligned_cols=92  Identities=13%  Similarity=0.126  Sum_probs=56.0

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++.++|-.|+|. |..+..+|+...  .+ +++++.+++..+.+++.    +....+.... +  ..   .     ..
T Consensus        95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~-~--~~---~-----~~  157 (277)
T cd08255          95 PRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEAL----GPADPVAADT-A--DE---I-----GG  157 (277)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHHc----CCCccccccc-h--hh---h-----cC
Confidence            44567888888765 667777777754  44 99999888877655542    3111111110 0  00   1     13


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ..+|+++-....   ...+...++.++++|.++.
T Consensus       158 ~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~  188 (277)
T cd08255         158 RGADVVIEASGS---PSALETALRLLRDRGRVVL  188 (277)
T ss_pred             CCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence            569988753222   2356778899999999875

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=88.06  E-value=1.1  Score=34.91  Aligned_cols=75  Identities=20%  Similarity=0.246  Sum_probs=45.0

Q ss_pred             HHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHH
Q 029414           41 LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH  120 (194)
Q Consensus        41 ~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~  120 (194)
                      +..+.+..+ ..+|+++|.+++..+.+.+.    |...   -...+ .+   .+       ..+|+|++..+.......+
T Consensus         2 A~aL~~~g~-~~~v~g~d~~~~~~~~a~~~----g~~~---~~~~~-~~---~~-------~~~DlvvlavP~~~~~~~l   62 (258)
T PF02153_consen    2 ALALRKAGP-DVEVYGYDRDPETLEAALEL----GIID---EASTD-IE---AV-------EDADLVVLAVPVSAIEDVL   62 (258)
T ss_dssp             HHHHHHTTT-TSEEEEE-SSHHHHHHHHHT----TSSS---EEESH-HH---HG-------GCCSEEEE-S-HHHHHHHH
T ss_pred             hHHHHhCCC-CeEEEEEeCCHHHHHHHHHC----CCee---eccCC-Hh---Hh-------cCCCEEEEcCCHHHHHHHH
Confidence            344545433 68999999999887766532    4331   11111 12   22       4579999988777788888


Q ss_pred             HHHHhcccCCeEEE
Q 029414          121 ERLMKLLKVGGIAV  134 (194)
Q Consensus       121 ~~~~~~L~~gG~lv  134 (194)
                      +.+.+.+++|.++.
T Consensus        63 ~~~~~~~~~~~iv~   76 (258)
T PF02153_consen   63 EEIAPYLKPGAIVT   76 (258)
T ss_dssp             HHHHCGS-TTSEEE
T ss_pred             HHhhhhcCCCcEEE
Confidence            88888888765443

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=88.04  E-value=6  Score=32.10  Aligned_cols=101  Identities=24%  Similarity=0.287  Sum_probs=57.0

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++.+||-.|+| .|..+..+|+..+ ..+++.++.+++..+.+++    .+...-+.....+..+.+..+.    ...
T Consensus       180 ~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~~----~g~~~vv~~~~~~~~~~l~~~~----~~~  250 (363)
T cd08279         180 VRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELARR----FGATHTVNASEDDAVEAVRDLT----DGR  250 (363)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----hCCeEEeCCCCccHHHHHHHHc----CCC
Confidence            4456788888764 4666677777643 2248888887776665532    3432111111112223232321    135


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+|+++- ....  ...+..+++.|+++|.++.-
T Consensus       251 ~vd~vld-~~~~--~~~~~~~~~~l~~~G~~v~~  281 (363)
T cd08279         251 GADYAFE-AVGR--AATIRQALAMTRKGGTAVVV  281 (363)
T ss_pred             CCCEEEE-cCCC--hHHHHHHHHHhhcCCeEEEE
Confidence            6997763 3211  24567788999999998863

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=88.00  E-value=7.4  Score=30.68  Aligned_cols=99  Identities=17%  Similarity=0.181  Sum_probs=56.3

Q ss_pred             HcCCCeEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++.+++-.|.+  .|..+..++...  +.+++.++.+++..+.++.    .+....+.....+..+.+....    ..
T Consensus       164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~  233 (342)
T cd08266         164 LRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDYRKEDFVREVRELT----GK  233 (342)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEecCChHHHHHHHHHh----CC
Confidence            3456788888875  556666666664  5678888888766655432    2322112111112222222221    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+|.++-....    ..+..+++.++++|.++.-
T Consensus       234 ~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~  264 (342)
T cd08266         234 RGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC  264 (342)
T ss_pred             CCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence            468988754322    3467778899999998864

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=87.93  E-value=5.3  Score=33.13  Aligned_cols=100  Identities=18%  Similarity=0.235  Sum_probs=52.7

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc---CCC-----CcEEEEec-chHHHHHHHhhcCCC
Q 029414           30 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GVD-----HKINFIES-EALSVLDQLLKYSEN  100 (194)
Q Consensus        30 vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~~-----~~v~~~~~-d~~~~~~~~~~~~~~  100 (194)
                      |--+|.  |+.++.+|..+..+..|+++|++++.++.+++.....   +++     .+.++... +..+.          
T Consensus         3 I~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~----------   70 (388)
T PRK15057          3 ITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA----------   70 (388)
T ss_pred             EEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh----------
Confidence            555665  5555554444433567999999999888776532110   000     01122111 11111          


Q ss_pred             CCceeEEEEeCCcc-----------ccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          101 EGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       101 ~~~fD~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      ...-|+|++.-+.+           ...+.++.+.+ +++|.++|...+..+|
T Consensus        71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pg  122 (388)
T PRK15057         71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVG  122 (388)
T ss_pred             hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCc
Confidence            13568888765421           22344455556 6888877776666554

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=87.89  E-value=10  Score=30.04  Aligned_cols=98  Identities=14%  Similarity=0.119  Sum_probs=54.4

Q ss_pred             CCCeEEEE--c-ccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           26 NAKKTIEI--G-VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        26 ~~~~vLei--G-~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      .+.+++-+  | .+.|..+..+|+..  +.++++++.+++..+.+++    .+...-+.....+..+.+..+.    ...
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~~  211 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI----AKL  211 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh----CCC
Confidence            34455554  3 33456667777774  5689999988877776654    3432112212223333333321    124


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+|+++ |....   ......++.++++|.++.-.
T Consensus       212 ~~d~vi-d~~g~---~~~~~~~~~l~~~G~~v~~g  242 (324)
T cd08291         212 NATIFF-DAVGG---GLTGQILLAMPYGSTLYVYG  242 (324)
T ss_pred             CCcEEE-ECCCc---HHHHHHHHhhCCCCEEEEEE
Confidence            689777 43221   12344678889999988743

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=87.86  E-value=12  Score=29.82  Aligned_cols=100  Identities=15%  Similarity=0.176  Sum_probs=55.7

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ++++|+-.|+|. |..+..+|+... ..++++++.+++..+.+++    .+...-+.....+..+.+..+.    ..+.+
T Consensus       163 ~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~----~~~~~  233 (341)
T PRK05396        163 VGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELG----MTEGF  233 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhc----CCCCC
Confidence            466777777653 556677777753 2367888777665554433    3432111111222223333321    13568


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |+++-...   ....+..+.+.|+++|.++.-.
T Consensus       234 d~v~d~~g---~~~~~~~~~~~l~~~G~~v~~g  263 (341)
T PRK05396        234 DVGLEMSG---APSAFRQMLDNMNHGGRIAMLG  263 (341)
T ss_pred             CEEEECCC---CHHHHHHHHHHHhcCCEEEEEe
Confidence            97775222   1345677789999999998853

>PRK07671 cystathionine beta-lyase; Provisional

Probab=87.79  E-value=12  Score=30.83  Aligned_cols=121  Identities=13%  Similarity=0.194  Sum_probs=63.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEec-ch
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIES-EA   87 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~-d~   87 (194)
                      .++....+-..++........+-+++|.+.....++ .+.++.+|++.+..-. .+....+.+...+.  .+.++.. |.
T Consensus        48 ~~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~-~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~  124 (377)
T PRK07671         48 GNPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNRFGI--EHTFVDTSNL  124 (377)
T ss_pred             CChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH-HhCCCCEEEECCCccchHHHHHHHHHhcCCe--EEEEECCCCH
Confidence            345566666677776655566668888776554443 3445778887775432 34444444444553  3444443 33


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEeccc
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTL  139 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~  139 (194)
                      .++...+      .+...+|++..+  +......++.+.++.+. |..+++|++.
T Consensus       125 ~~l~~ai------~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~  173 (377)
T PRK07671        125 EEVEEAI------RPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTF  173 (377)
T ss_pred             HHHHHhc------CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence            3332222      234678887643  11112223444444443 5566666654

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=87.76  E-value=11  Score=30.13  Aligned_cols=99  Identities=20%  Similarity=0.261  Sum_probs=56.3

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++.+||-.|+|. |..+..+|+..  +.+ +++++.+++..+.++    ..+...-+...... .+.+....    ..
T Consensus       157 ~~~~~~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~-~~~~~~~~----~~  225 (343)
T cd08236         157 ITLGDTVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVAR----ELGADDTINPKEED-VEKVRELT----EG  225 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHH----HcCCCEEecCcccc-HHHHHHHh----CC
Confidence            34566888888755 66777778775  344 888887776555443    23432111111111 22222221    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+|+++-...   ....+..+++.|+++|.++.-
T Consensus       226 ~~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~  257 (343)
T cd08236         226 RGADLVIEAAG---SPATIEQALALARPGGKVVLV  257 (343)
T ss_pred             CCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence            45998874321   134567788999999998864

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=87.68  E-value=3  Score=32.98  Aligned_cols=34  Identities=15%  Similarity=0.167  Sum_probs=26.5

Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ..+|+|++..........++.+.+.+.++.+|+.
T Consensus        67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~  100 (305)
T PRK12921         67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP  100 (305)
T ss_pred             CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence            5799999887666677788888888888776654

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=87.66  E-value=14  Score=31.15  Aligned_cols=123  Identities=11%  Similarity=0.107  Sum_probs=66.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .++....+-..++.....+..+-.++|+......+...+.++.+|+..+..- ......+..+...+.  ++.++..+..
T Consensus        62 ~~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv--~v~~vd~~d~  139 (431)
T PRK08248         62 MNPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGI--TVKFVDPSDP  139 (431)
T ss_pred             CCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCE--EEEEECCCCH
Confidence            3555666667777777777788888888776666654455577787766422 233344444555554  3445443323


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEeccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTL  139 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~  139 (194)
                      +.+....     .+...+|++...  +......++.+.++.+. |..+++|++.
T Consensus       140 e~l~~ai-----~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~  188 (431)
T PRK08248        140 ENFEAAI-----TDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTF  188 (431)
T ss_pred             HHHHHhc-----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCC
Confidence            3333321     245678887633  11111123444444444 4456666654

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=87.64  E-value=3.6  Score=32.54  Aligned_cols=32  Identities=22%  Similarity=0.201  Sum_probs=23.2

Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEE
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIA  133 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~l  133 (194)
                      ...|+|++..+......+++++.+.|++|.++
T Consensus        63 ~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv   94 (279)
T COG0287          63 AEADLVIVAVPIEATEEVLKELAPHLKKGAIV   94 (279)
T ss_pred             ccCCEEEEeccHHHHHHHHHHhcccCCCCCEE
Confidence            45788888877777777788777777765433

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=87.56  E-value=14  Score=31.80  Aligned_cols=120  Identities=17%  Similarity=0.189  Sum_probs=71.2

Q ss_pred             CCHHHHHHHHHHHHHc--CCCeEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEE
Q 029414           10 TAPDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFI   83 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~--~~~~vLeiG~G~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~   83 (194)
                      +-+....++..++...  +...+.|..||+|...........   ....+++-|..+.+...++.++.-.+.. +.....
T Consensus       199 Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~  278 (501)
T TIGR00497       199 TPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNII  278 (501)
T ss_pred             CcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcc
Confidence            3444555555555432  346899999999998766544322   1346899999999999999887655543 233333


Q ss_pred             ecchHHHHHHHhhcCCCCCceeEEEEeCCc----------------------------cccHHHHHHHHhcccCCeEEE
Q 029414           84 ESEALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAV  134 (194)
Q Consensus        84 ~~d~~~~~~~~~~~~~~~~~fD~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv  134 (194)
                      .+|........     ...+||.|+.+++.                            ..-..++.++...|++||...
T Consensus       279 ~~dtl~~~d~~-----~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~a  352 (501)
T TIGR00497       279 NADTLTTKEWE-----NENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAA  352 (501)
T ss_pred             cCCcCCCcccc-----ccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEE
Confidence            44433211110     12457777655420                            012345666778899988643

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.55  E-value=6.4  Score=33.00  Aligned_cols=93  Identities=19%  Similarity=0.171  Sum_probs=56.9

Q ss_pred             eEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCcee
Q 029414           29 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFD  105 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~fD  105 (194)
                      +|+-+|+  |..+..++..+. .+..++.+|.+++..+.+++..       .+.++.+|+.+  .+...     +...+|
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~-----~~~~a~   67 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLREA-----GAEDAD   67 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHHHc-----CCCcCC
Confidence            4677776  777777777653 2568999999998776655421       46777888754  23322     135789


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      .+++..........+....+.+.|.-.+++
T Consensus        68 ~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~   97 (453)
T PRK09496         68 LLIAVTDSDETNMVACQIAKSLFGAPTTIA   97 (453)
T ss_pred             EEEEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence            888765443334444444556644444444

>PRK10083 putative oxidoreductase; Provisional

Probab=87.50  E-value=8.3  Score=30.75  Aligned_cols=99  Identities=14%  Similarity=0.057  Sum_probs=53.0

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhh-CCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALT-IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~-~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++.+|+-.|+|. |..++.+|+. .+ -..+++++.+++..+.+++    .+...-+.....+..+.+..   .   .
T Consensus       158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~---~---g  226 (339)
T PRK10083        158 PTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKE----SGADWVINNAQEPLGEALEE---K---G  226 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHhc---C---C
Confidence            44567888888542 3344445553 23 3468888888877766554    24321111111122222211   0   1


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+|+++ |....  ...+..+++.|+++|.++.-
T Consensus       227 ~~~d~vi-d~~g~--~~~~~~~~~~l~~~G~~v~~  258 (339)
T PRK10083        227 IKPTLII-DAACH--PSILEEAVTLASPAARIVLM  258 (339)
T ss_pred             CCCCEEE-ECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence            2345554 43221  23567788999999999874

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=87.50  E-value=1.9  Score=38.05  Aligned_cols=93  Identities=12%  Similarity=0.038  Sum_probs=57.3

Q ss_pred             CeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCCCce
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSF  104 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~f  104 (194)
                      .+|+-+|+  |..+..+++.+.. +..++.+|.|++.++.+++.        ...++.||+.+.  +.+.     +-++.
T Consensus       401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~a-----gi~~A  465 (621)
T PRK03562        401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESA-----GAAKA  465 (621)
T ss_pred             CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhc-----CCCcC
Confidence            56888777  4555555544322 45899999999988877652        356788887653  3332     13578


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      |++++--+..+.....-...+.+.|+-.+++
T Consensus       466 ~~vvv~~~d~~~n~~i~~~ar~~~p~~~iia  496 (621)
T PRK03562        466 EVLINAIDDPQTSLQLVELVKEHFPHLQIIA  496 (621)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            8888765433333333334456667766665

>PRK08064 cystathionine beta-lyase; Provisional

Probab=87.36  E-value=13  Score=30.68  Aligned_cols=121  Identities=15%  Similarity=0.182  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      ++...++-..++........+-+++|+......+. .+.++.+|+..+..-. .....+..+...|.  ++.++..+..+
T Consensus        53 ~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~  129 (390)
T PRK08064         53 NPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGI--EHTFVDMTNLE  129 (390)
T ss_pred             ChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCC--EEEEECCCCHH
Confidence            45566666666666555555666776665444443 4455778887765322 34444444555554  35554432223


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEeccc
Q 029414           90 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTL  139 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~  139 (194)
                      .+....     .+.-.+|++..+  .......++.+.++.+. |..+++|++.
T Consensus       130 ~l~~~l-----~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~  177 (390)
T PRK08064        130 EVAQNI-----KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTF  177 (390)
T ss_pred             HHHHhc-----CCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCC
Confidence            333321     234678887754  11111223344444433 5566666653

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=87.30  E-value=8.9  Score=31.60  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=44.1

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCC-------------------cchHHhHHHHHHHcCCCCcEEEEec
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVN-------------------RETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~-------------------~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +..+|+-+|||. |...+..+...+ -++++.+|.+                   ....+.+++++.+....-++..+..
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  212 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE  212 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            567899999974 443333333333 5789999987                   2345556666665442223444433


Q ss_pred             chHH-HHHHHhhcCCCCCceeEEEEeCC
Q 029414           86 EALS-VLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        86 d~~~-~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      ...+ ....+      ...+|+|+...+
T Consensus       213 ~~~~~~~~~~------~~~~D~Vv~~~d  234 (376)
T PRK08762        213 RVTSDNVEAL------LQDVDVVVDGAD  234 (376)
T ss_pred             cCChHHHHHH------HhCCCEEEECCC
Confidence            3221 22232      256998875544

>PRK05939 hypothetical protein; Provisional

Probab=87.27  E-value=16  Score=30.40  Aligned_cols=122  Identities=12%  Similarity=0.142  Sum_probs=66.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      -+|.+..+=..++........+-+.+|.......+...+.++.+|+..+..-. ..... ..+...|.  .+.++..+..
T Consensus        45 g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~-~~l~~~G~--~v~~v~~~d~  121 (397)
T PRK05939         45 GTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF-GTLRGLGV--EVTMVDATDV  121 (397)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHH-HHHHhcCC--EEEEECCCCH
Confidence            35666666667777777777888888776655555444555778888765322 22222 23444553  3455433222


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCe-EEEEeccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTL  139 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~  139 (194)
                      +.+....     .+.-.+|++...  .......++.+.++.+..| .+++|++.
T Consensus       122 e~l~~~l-----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~  170 (397)
T PRK05939        122 QNVAAAI-----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM  170 (397)
T ss_pred             HHHHHhC-----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence            3233321     244678887643  2222344566666665444 55555543

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=87.17  E-value=12  Score=28.90  Aligned_cols=80  Identities=16%  Similarity=0.155  Sum_probs=43.6

Q ss_pred             CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcc-------------------hHHhHHHHHHHcCCCCcEEEEec
Q 029414           26 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRE-------------------TYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus        26 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +..+|+-+|+| .|...+......+ -++++.+|.+.-                   ..+.+++++.+....-+++.+..
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~  109 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA  109 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence            56899999997 3443333333333 578888886442                   22344556655442224444444


Q ss_pred             chHH-HHHHHhhcCCCCCceeEEEEeCC
Q 029414           86 EALS-VLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        86 d~~~-~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      ...+ ....+      ...||+|+...+
T Consensus       110 ~i~~~~~~~~------~~~~DiVi~~~D  131 (245)
T PRK05690        110 RLDDDELAAL------IAGHDLVLDCTD  131 (245)
T ss_pred             cCCHHHHHHH------HhcCCEEEecCC
Confidence            3322 22333      257998886554

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=87.15  E-value=3.7  Score=32.88  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=29.3

Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      .+.+|+|++.....+..+.++.+.+.++++..+++
T Consensus        65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~   99 (307)
T COG1893          65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLF   99 (307)
T ss_pred             cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEE
Confidence            36899999988777788899999999999986654

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=87.08  E-value=0.62  Score=31.18  Aligned_cols=32  Identities=16%  Similarity=0.147  Sum_probs=24.6

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR   61 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~   61 (194)
                      ...-+|+|||+|...-.|...   +-.-.++|.-.
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~   90 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR   90 (112)
T ss_pred             CCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence            457999999999998888764   55667787643

; GO: 0008168 methyltransferase activity

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=87.08  E-value=8.3  Score=32.34  Aligned_cols=86  Identities=10%  Similarity=0.011  Sum_probs=55.8

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .+++|+-+|+|. |......++..  +.+|+.+|.++...+.|++    .|.    ...  +..+   .+       ...
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e---~v-------~~a  258 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEE---AV-------KEG  258 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHH---HH-------cCC
Confidence            578999999986 55556566654  4689999999987776654    232    111  1111   11       357


Q ss_pred             eEEEEeCCccccHHHHHHH-HhcccCCeEEEEe
Q 029414          105 DYAFVDADKDNYCNYHERL-MKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~-~~~L~~gG~lv~~  136 (194)
                      |+|+....   ....+... .+.+++||+++.-
T Consensus       259 DVVI~atG---~~~~i~~~~l~~mk~Ggilvnv  288 (413)
T cd00401         259 DIFVTTTG---NKDIITGEHFEQMKDGAIVCNI  288 (413)
T ss_pred             CEEEECCC---CHHHHHHHHHhcCCCCcEEEEe
Confidence            98875432   23445544 7999999999764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=87.08  E-value=6.9  Score=26.02  Aligned_cols=91  Identities=16%  Similarity=0.128  Sum_probs=52.5

Q ss_pred             eEEEEcccccHHHHH-HHhhCCCCCEEE-EEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           29 KTIEIGVFTGYSLLL-TALTIPEDGQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~-la~~~~~~~~v~-~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      +|.-||+|.-..... -.....++.+++ .+|.+++..+.+.+   ..+.    . ...|..+.+..        ..+|+
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~---~~~~----~-~~~~~~~ll~~--------~~~D~   65 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAE---KYGI----P-VYTDLEELLAD--------EDVDA   65 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH---HTTS----E-EESSHHHHHHH--------TTESE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHH---Hhcc----c-chhHHHHHHHh--------hcCCE
Confidence            577889966532222 122222355655 57888766655533   3343    3 44566666554        57999


Q ss_pred             EEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          107 AFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       107 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      |++..+.....+.   +...++.|-.++++-.
T Consensus        66 V~I~tp~~~h~~~---~~~~l~~g~~v~~EKP   94 (120)
T PF01408_consen   66 VIIATPPSSHAEI---AKKALEAGKHVLVEKP   94 (120)
T ss_dssp             EEEESSGGGHHHH---HHHHHHTTSEEEEESS
T ss_pred             EEEecCCcchHHH---HHHHHHcCCEEEEEcC
Confidence            9998765544444   4455666667777643

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PTZ00357 methyltransferase; Provisional

Probab=87.06  E-value=3.2  Score=37.05  Aligned_cols=104  Identities=14%  Similarity=0.072  Sum_probs=61.5

Q ss_pred             eEEEEcccccHHHHH---HHhhCCCCCEEEEEeCCcchHHhHHHHH---HHcCC-----CCcEEEEecchHHHHHHHhhc
Q 029414           29 KTIEIGVFTGYSLLL---TALTIPEDGQITAIDVNRETYEIGLPII---KKAGV-----DHKINFIESEALSVLDQLLKY   97 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~---la~~~~~~~~v~~iD~~~~~~~~a~~~~---~~~~~-----~~~v~~~~~d~~~~~~~~~~~   97 (194)
                      .|+-+|+|-|-....   .++...-..+|+++|-++......+.+.   +.+.-     .+.|+++..|-.++-......
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            589999999965433   3333333568999999987655555443   22211     346999999987752210000


Q ss_pred             ----CCCCCceeEEEEe-----CCccccHHHHHHHHhcccC----CeE
Q 029414           98 ----SENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKV----GGI  132 (194)
Q Consensus        98 ----~~~~~~fD~i~id-----~~~~~~~~~~~~~~~~L~~----gG~  132 (194)
                          ....+++|+|+..     ++-+--.+-|+.+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                0012479998743     2223344566777777776    675

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.03  E-value=11  Score=28.26  Aligned_cols=82  Identities=18%  Similarity=0.145  Sum_probs=45.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-CCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE  101 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~~~  101 (194)
                      ++++||-.|++ |..+..+++.+ ..+.+|++++.+++..+...+.+...+   ++.++.+|..+.  ......+. ...
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45788988875 44444444333 236789999988876665544444322   567777765431  11111100 002


Q ss_pred             CceeEEEEeC
Q 029414          102 GSFDYAFVDA  111 (194)
Q Consensus       102 ~~fD~i~id~  111 (194)
                      +.+|.++...
T Consensus        80 ~~id~ii~~a   89 (238)
T PRK05786         80 NAIDGLVVTV   89 (238)
T ss_pred             CCCCEEEEcC
Confidence            4578887654

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=87.02  E-value=1.9  Score=33.01  Aligned_cols=75  Identities=16%  Similarity=0.296  Sum_probs=38.9

Q ss_pred             cccHHH--HHHHhhCC-CCCEEEEEeCCcchH--HhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEe
Q 029414           36 FTGYSL--LLTALTIP-EDGQITAIDVNRETY--EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD  110 (194)
Q Consensus        36 G~G~~~--~~la~~~~-~~~~v~~iD~~~~~~--~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id  110 (194)
                      |.|-.|  ..+|..+. .+.+|..+|-||..-  ...+..-....+++++.+...+-...+.....+ -+...||+|++|
T Consensus        12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~-a~~~~~d~VlvD   90 (231)
T PF07015_consen   12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEA-AEASGFDFVLVD   90 (231)
T ss_pred             CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHH-HHhcCCCEEEEe
Confidence            344433  33444332 368999999888532  222222222234567777766544443332111 012469999999


Q ss_pred             C
Q 029414          111 A  111 (194)
Q Consensus       111 ~  111 (194)
                      -
T Consensus        91 l   91 (231)
T PF07015_consen   91 L   91 (231)
T ss_pred             C
Confidence            4

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK06234 methionine gamma-lyase; Provisional

Probab=86.92  E-value=15  Score=30.50  Aligned_cols=124  Identities=12%  Similarity=0.130  Sum_probs=65.0

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEec-chH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIES-EAL   88 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~-d~~   88 (194)
                      ++...++-..++.......++-+++|++.....+...+.++.+|+..+..-. ........+...+.  ++.++.. |..
T Consensus        63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~vd~~d~e  140 (400)
T PRK06234         63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV--EVTFVDTSNLE  140 (400)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe--EEEEECCCCHH
Confidence            4556666667777666667888888887665555444555777777664322 22223333444443  3444433 333


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhccc---CCeEEEEecccccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLK---VGGIAVYDNTLWGG  142 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~---~gG~lv~~~~~~~g  142 (194)
                      ++...+      .+.-.+|++..+  +......++.+.++.+   +|-.+++|++...+
T Consensus       141 ~l~~~i------~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~  193 (400)
T PRK06234        141 EVRNAL------KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTP  193 (400)
T ss_pred             HHHHHh------ccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCch
Confidence            332333      234578887643  1111111333444443   36777888765433

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=86.77  E-value=15  Score=29.48  Aligned_cols=97  Identities=21%  Similarity=0.104  Sum_probs=52.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..+.+|+-+|+|  ..+..++..+.  ...+++.++.+++......+.+   +.    ...  +..+. .+.      -.
T Consensus       176 l~~~~V~ViGaG--~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~---g~----~~~--~~~~~-~~~------l~  237 (311)
T cd05213         176 LKGKKVLVIGAG--EMGELAAKHLAAKGVAEITIANRTYERAEELAKEL---GG----NAV--PLDEL-LEL------LN  237 (311)
T ss_pred             ccCCEEEEECcH--HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc---CC----eEE--eHHHH-HHH------Hh
Confidence            367899999985  44444333321  1357888999876543333322   32    222  12222 222      14


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ..|+|+..-..+.+...++.+....+.++.++++-..
T Consensus       238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence            5899988765444434444444444335788887554

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=86.76  E-value=6.8  Score=32.86  Aligned_cols=95  Identities=14%  Similarity=0.071  Sum_probs=57.9

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCCCc
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGS  103 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~  103 (194)
                      .++++-+|+  |..+..+++.+.. +..++.+|.+++..+..++..      ..+.++.||+.+.  +...     .-..
T Consensus       231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~-----~~~~  297 (453)
T PRK09496        231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEE-----GIDE  297 (453)
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhc-----CCcc
Confidence            567998888  6666666665532 568999999998877666542      2467788887543  3322     1357


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEE
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV  134 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv  134 (194)
                      +|.+++-..............+.+.+.-+++
T Consensus       298 a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~  328 (453)
T PRK09496        298 ADAFIALTNDDEANILSSLLAKRLGAKKVIA  328 (453)
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence            8888875443222223333345555553443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.72  E-value=8.7  Score=31.04  Aligned_cols=95  Identities=16%  Similarity=0.100  Sum_probs=56.2

Q ss_pred             CCeEEEEcccc-c-HHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH-------cCCC-----CcEEEEecchHHHHH
Q 029414           27 AKKTIEIGVFT-G-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-------AGVD-----HKINFIESEALSVLD   92 (194)
Q Consensus        27 ~~~vLeiG~G~-G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-------~~~~-----~~v~~~~~d~~~~~~   92 (194)
                      -++|--||+|+ | .++..++..   +.+|+..|.+++..+.+++.+..       .+..     .++++.. +..    
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~a---G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~----   78 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAH---GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIE----   78 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHH----
Confidence            36789999983 3 344445543   77999999999888776654432       2211     1222221 211    


Q ss_pred             HHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEE
Q 029414           93 QLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        93 ~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ..      -..-|+|+-...  ..--..+++.+.+.++|+.+|..
T Consensus        79 ~a------v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaS  117 (321)
T PRK07066         79 AC------VADADFIQESAPEREALKLELHERISRAAKPDAIIAS  117 (321)
T ss_pred             HH------hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            11      145788886544  22345667888888998874444

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.63  E-value=7.9  Score=33.03  Aligned_cols=118  Identities=19%  Similarity=0.214  Sum_probs=66.2

Q ss_pred             HHHHHHhhCCCCCEEEEEeCCc-chHHhHHHHHHHcC-C-CCcEEEEe----cchHHHHHHHhhcCCCCCceeEEEEeCC
Q 029414           40 SLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAG-V-DHKINFIE----SEALSVLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        40 ~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~-~-~~~v~~~~----~d~~~~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      .+.||.+.-- ..-+.++|.-. .+++..+-+.++.. + +.-|.++.    .|+..+....... -..+.||+|++|-.
T Consensus       398 IayWLlqNkf-rVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~-a~~~gfDVvLiDTA  475 (587)
T KOG0781|consen  398 IAYWLLQNKF-RVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQE-ARNQGFDVVLIDTA  475 (587)
T ss_pred             HHHHHHhCCc-eEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHH-HHhcCCCEEEEecc
Confidence            4456665422 23355677544 35666666555442 1 12233322    2332222110000 01478999999954


Q ss_pred             -----ccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 029414          113 -----KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP  174 (194)
Q Consensus       113 -----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  174 (194)
                           .+.....+..+.+.-+|+-+|.+-.++-..       +        ..+.++.|++.+.+++
T Consensus       476 GR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~-------d--------sv~q~~~fn~al~~~~  527 (587)
T KOG0781|consen  476 GRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN-------D--------SVDQLKKFNRALADHS  527 (587)
T ss_pred             ccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc-------H--------HHHHHHHHHHHHhcCC
Confidence                 233445566667888999999887766322       1        5566899999999876

>PRK08324 short chain dehydrogenase; Validated

Probab=86.42  E-value=13  Score=33.33  Aligned_cols=79  Identities=15%  Similarity=0.141  Sum_probs=45.0

Q ss_pred             CCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHhhcCC
Q 029414           27 AKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYSE   99 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~~   99 (194)
                      ++++|-.|++ |..+..+++.+ ..+.+|+.++.+++..+.+.+.+...   .++.++..|..+      .+.....   
T Consensus       422 gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~---  494 (681)
T PRK08324        422 GKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAAL---  494 (681)
T ss_pred             CCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHH---
Confidence            4678888853 33333333332 12578999999987776665554332   367777766432      1222111   


Q ss_pred             CCCceeEEEEeCC
Q 029414          100 NEGSFDYAFVDAD  112 (194)
Q Consensus       100 ~~~~fD~i~id~~  112 (194)
                      ..+.+|.++....
T Consensus       495 ~~g~iDvvI~~AG  507 (681)
T PRK08324        495 AFGGVDIVVSNAG  507 (681)
T ss_pred             HcCCCCEEEECCC
Confidence            1357899887654

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=86.40  E-value=8.4  Score=30.31  Aligned_cols=92  Identities=13%  Similarity=-0.010  Sum_probs=51.5

Q ss_pred             eEEEEcccccH--HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC---CcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           29 KTIEIGVFTGY--SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        29 ~vLeiG~G~G~--~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      +|+-+|+|.-.  .+..|+..   +..|+.++.+++.++..++    .++.   ....... ........       .+.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~---g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~~-~~~~~~~~-------~~~   66 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQA---GHDVTLVARRGAHLDALNE----NGLRLEDGEITVPV-LAADDPAE-------LGP   66 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhC---CCeEEEEECChHHHHHHHH----cCCcccCCceeecc-cCCCChhH-------cCC
Confidence            57888886432  22223332   4589999987766554443    2321   1111000 00000111       257


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +|+|++-.........++.+.+.+.++..|+.
T Consensus        67 ~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~   98 (304)
T PRK06522         67 QDLVILAVKAYQLPAALPSLAPLLGPDTPVLF   98 (304)
T ss_pred             CCEEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence            99999987666677888888888888766654

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=86.32  E-value=13  Score=29.33  Aligned_cols=99  Identities=11%  Similarity=0.047  Sum_probs=57.9

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc-hHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~~  100 (194)
                      ..++.+|+-.|+  +.|..+..+|+..  +.+++.+..+++..+.+++    .+...-+.....+ ..+.+....    .
T Consensus       138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~  207 (334)
T PTZ00354        138 VKKGQSVLIHAGASGVGTAAAQLAEKY--GAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLT----G  207 (334)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHh----C
Confidence            345678888874  5677777888775  4566667777776666543    3432111111112 222222221    1


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ...+|+++- ...   ...+..+++.|+++|.++.-
T Consensus       208 ~~~~d~~i~-~~~---~~~~~~~~~~l~~~g~~i~~  239 (334)
T PTZ00354        208 EKGVNLVLD-CVG---GSYLSETAEVLAVDGKWIVY  239 (334)
T ss_pred             CCCceEEEE-CCc---hHHHHHHHHHhccCCeEEEE
Confidence            246898874 322   24667788999999998863

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=86.19  E-value=17  Score=29.55  Aligned_cols=96  Identities=20%  Similarity=0.249  Sum_probs=54.5

Q ss_pred             CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ++.+++-.|+| .|..+..+|+..  +.+++.++.+++....+.+   ..+.. . .+...+. +.+...      ...+
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~---~~Ga~-~-~i~~~~~-~~~~~~------~~~~  245 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALE---HLGAD-D-YLVSSDA-AEMQEA------ADSL  245 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH---hcCCc-E-EecCCCh-HHHHHh------cCCC
Confidence            56788877754 355666677764  4578888877655444333   23432 1 1111221 222222      2458


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      |+++-...   ....++.+.+.++++|.++.-..
T Consensus       246 D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        246 DYIIDTVP---VFHPLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             cEEEECCC---chHHHHHHHHHhccCCEEEEECC
Confidence            87763221   12456778899999999987543

>PRK05967 cystathionine beta-lyase; Provisional

Probab=86.05  E-value=19  Score=30.04  Aligned_cols=121  Identities=15%  Similarity=0.119  Sum_probs=68.9

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      +|-...+-..++........+-+.+|.+.....+...+.++.+|+..+..-. ....+++.++..+.  +++++..+..+
T Consensus        63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e  140 (395)
T PRK05967         63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGA  140 (395)
T ss_pred             ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHH
Confidence            4444444445555555555677888877766666555666888888765443 23334455565664  46666443334


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCe-EEEEecc
Q 029414           90 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNT  138 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~  138 (194)
                      .+....     .+.-.+|++..+  ..-....++.+.+..+..| .+++|++
T Consensus       141 ~l~~al-----~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t  187 (395)
T PRK05967        141 GIAKLM-----RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNT  187 (395)
T ss_pred             HHHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECC
Confidence            333322     244678988854  3334555677777666555 4555555

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=85.98  E-value=9.9  Score=30.16  Aligned_cols=97  Identities=14%  Similarity=0.126  Sum_probs=56.8

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH-HHhhcCCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~  100 (194)
                      ..++.+||-+|+| .|..+..+|+..  +.+ ++.++.+++..+.+++    .+.+   .++..+...... ...    .
T Consensus       157 ~~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~----~  223 (334)
T cd08234         157 IKPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKED----N  223 (334)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHh----c
Confidence            4456788888865 356667777764  344 8888888877666543    2432   222222111111 111    1


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+.+|+++-...   ....+..+++.|+++|.++.-
T Consensus       224 ~~~vd~v~~~~~---~~~~~~~~~~~l~~~G~~v~~  256 (334)
T cd08234         224 PYGFDVVIEATG---VPKTLEQAIEYARRGGTVLVF  256 (334)
T ss_pred             CCCCcEEEECCC---ChHHHHHHHHHHhcCCEEEEE
Confidence            356998875321   134567778999999998863

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK09028 cystathionine beta-lyase; Provisional

Probab=85.94  E-value=19  Score=29.98  Aligned_cols=119  Identities=12%  Similarity=0.067  Sum_probs=64.1

Q ss_pred             HHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414           16 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        16 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      .+=..++.......++-..+|+......+...+.++.+|+..+..- .....+...+...+.  .+.++..+..+.+...
T Consensus        65 ~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~l~~~  142 (394)
T PRK09028         65 AFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEGIREL  142 (394)
T ss_pred             HHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHHHHHh
Confidence            3334444444555677777777665544433455688888887653 333444444555554  3444433323333332


Q ss_pred             hhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCC-eEEEEeccccc
Q 029414           95 LKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVG-GIAVYDNTLWG  141 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~g-G~lv~~~~~~~  141 (194)
                      .     .+.-.+|++..+  +......++.+.++.+.. ..+++|++...
T Consensus       143 l-----~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~  187 (394)
T PRK09028        143 I-----RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWAS  187 (394)
T ss_pred             c-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccc
Confidence            1     244678888754  223345566666666654 45556665543

>PRK07877 hypothetical protein; Provisional

Probab=85.83  E-value=11  Score=34.11  Aligned_cols=80  Identities=11%  Similarity=0.096  Sum_probs=48.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCcc------------------hHHhHHHHHHHcCCCCcEEEEecc
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPED-GQITAIDVNRE------------------TYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~-~~v~~iD~~~~------------------~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      +..+|+-+|||.|........... . ++++.+|.+.-                  ..+.+++++.+.+-.-+|+.+...
T Consensus       106 ~~~~V~IvG~GlGs~~a~~LaraG-vvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~  184 (722)
T PRK07877        106 GRLRIGVVGLSVGHAIAHTLAAEG-LCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG  184 (722)
T ss_pred             hcCCEEEEEecHHHHHHHHHHHcc-CCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            567899999998875554433322 3 68888886541                  234566666665533456666554


Q ss_pred             hH-HHHHHHhhcCCCCCceeEEEEeCC
Q 029414           87 AL-SVLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        87 ~~-~~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      .. +.+..+      ...+|+|+-..+
T Consensus       185 i~~~n~~~~------l~~~DlVvD~~D  205 (722)
T PRK07877        185 LTEDNVDAF------LDGLDVVVEECD  205 (722)
T ss_pred             CCHHHHHHH------hcCCCEEEECCC
Confidence            33 234444      256998875554

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.75  E-value=12  Score=29.74  Aligned_cols=93  Identities=22%  Similarity=0.117  Sum_probs=51.7

Q ss_pred             CeEEEEcccccH--HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc-CC--C--------CcEEEEecchHHHHHHH
Q 029414           28 KKTIEIGVFTGY--SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GV--D--------HKINFIESEALSVLDQL   94 (194)
Q Consensus        28 ~~vLeiG~G~G~--~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~--~--------~~v~~~~~d~~~~~~~~   94 (194)
                      ++|.-||+|.=.  .+..++..   +.+|+.+|.+++.++.+++.+... +.  +        .++++. .+..+.    
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~---g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~----   76 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARK---GLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAA----   76 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHH----
Confidence            568888887533  33333332   568999999999888877653221 10  0        112221 122111    


Q ss_pred             hhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhcccCCeEEE
Q 029414           95 LKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAV  134 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~L~~gG~lv  134 (194)
                            ....|+|+......  ....+++.+.+.++++.+++
T Consensus        77 ------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~  112 (311)
T PRK06130         77 ------VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA  112 (311)
T ss_pred             ------hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence                  14579998865432  24566777766666655443

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=85.66  E-value=14  Score=28.38  Aligned_cols=88  Identities=17%  Similarity=0.118  Sum_probs=47.1

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcc-------------------hHHhHHHHHHHcCCCCcEEEEec
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRE-------------------TYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +..+|+-+|+|. |...+..+.... -++++.+|.+.-                   ..+.+++.+.+.+..-+++.+..
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~  101 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA  101 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence            457899999974 554444333333 578888886542                   22345566655543224444443


Q ss_pred             chHH-HHHHHhhcCCCCCceeEEEEeCCccccHHHH
Q 029414           86 EALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYH  120 (194)
Q Consensus        86 d~~~-~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~  120 (194)
                      ...+ ...++      ...+|+|+...+.......+
T Consensus       102 ~i~~~~~~~~------~~~~DlVvd~~D~~~~r~~l  131 (240)
T TIGR02355       102 KLDDAELAAL------IAEHDIVVDCTDNVEVRNQL  131 (240)
T ss_pred             cCCHHHHHHH------hhcCCEEEEcCCCHHHHHHH
Confidence            3222 23333      25799888655433333333

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08328 hypothetical protein; Provisional

Probab=85.59  E-value=13  Score=28.32  Aligned_cols=35  Identities=23%  Similarity=0.201  Sum_probs=23.0

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR   61 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~   61 (194)
                      +..+|+-+|||. |...+..+...+ -++++.+|.+.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCc
Confidence            467899999984 544444333333 57899998653

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=85.58  E-value=11  Score=29.95  Aligned_cols=100  Identities=23%  Similarity=0.259  Sum_probs=60.1

Q ss_pred             HcCCCeEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++.+||-.|++  .|..+..+|+..  +.+++.+..+++..+.++    ..+...-+.....+..+.+..+.    ..
T Consensus       163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~----~~  232 (341)
T cd08297         163 LKPGDWVVISGAGGGLGHLGVQYAKAM--GLRVIAIDVGDEKLELAK----ELGADAFVDFKKSDDVEAVKELT----GG  232 (341)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH----HcCCcEEEcCCCccHHHHHHHHh----cC
Confidence            4456788888875  567777888875  468999988876665543    23432111111113323333321    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +.+|+++-+...   ...+..+++.++++|.++.-
T Consensus       233 ~~vd~vl~~~~~---~~~~~~~~~~l~~~g~~v~~  264 (341)
T cd08297         233 GGAHAVVVTAVS---AAAYEQALDYLRPGGTLVCV  264 (341)
T ss_pred             CCCCEEEEcCCc---hHHHHHHHHHhhcCCEEEEe
Confidence            569988753322   23466778999999999964

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK08655 prephenate dehydrogenase; Provisional

Probab=85.57  E-value=5.2  Score=33.77  Aligned_cols=87  Identities=14%  Similarity=0.097  Sum_probs=44.8

Q ss_pred             eEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414           29 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  107 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i  107 (194)
                      +|.=+| |.|..+..++..+. .+.+|++++.+++.....   ....+.    .. ..+..+.          ....|+|
T Consensus         2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~---a~~~gv----~~-~~~~~e~----------~~~aDvV   62 (437)
T PRK08655          2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEV---AKELGV----EY-ANDNIDA----------AKDADIV   62 (437)
T ss_pred             EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHHH---HHHcCC----ee-ccCHHHH----------hccCCEE
Confidence            466676 23444444444332 145789999887553221   222222    11 1122111          1346888


Q ss_pred             EEeCCccccHHHHHHHHhcccCCeEEE
Q 029414          108 FVDADKDNYCNYHERLMKLLKVGGIAV  134 (194)
Q Consensus       108 ~id~~~~~~~~~~~~~~~~L~~gG~lv  134 (194)
                      ++..+.......++.+.+.+++|.+++
T Consensus        63 Ilavp~~~~~~vl~~l~~~l~~~~iVi   89 (437)
T PRK08655         63 IISVPINVTEDVIKEVAPHVKEGSLLM   89 (437)
T ss_pred             EEecCHHHHHHHHHHHHhhCCCCCEEE
Confidence            876665555666677777777665443

>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component

Probab=85.55  E-value=7.5  Score=25.31  Aligned_cols=71  Identities=11%  Similarity=0.039  Sum_probs=42.5

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  107 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i  107 (194)
                      ++|| +-||+|.+|..++..+                   ++.++..+++  +++...+..+....       ...+|+|
T Consensus         4 ~~IL-l~C~~G~sSS~l~~k~-------------------~~~~~~~gi~--~~v~a~~~~~~~~~-------~~~~Dvi   54 (95)
T TIGR00853         4 TNIL-LLCAAGMSTSLLVNKM-------------------NKAAEEYGVP--VKIAAGSYGAAGEK-------LDDADVV   54 (95)
T ss_pred             cEEE-EECCCchhHHHHHHHH-------------------HHHHHHCCCc--EEEEEecHHHHHhh-------cCCCCEE
Confidence            4454 6677787776666532                   4555666764  77777777665333       3579999


Q ss_pred             EEeCCccccHHHHHHHHhcccCC
Q 029414          108 FVDADKDNYCNYHERLMKLLKVG  130 (194)
Q Consensus       108 ~id~~~~~~~~~~~~~~~~L~~g  130 (194)
                      ++.+....   .++.+.+...+-
T Consensus        55 ll~pqi~~---~~~~i~~~~~~~   74 (95)
T TIGR00853        55 LLAPQVAY---MLPDLKKETDKK   74 (95)
T ss_pred             EECchHHH---HHHHHHHHhhhc
Confidence            98764333   344554555443

Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=85.55  E-value=17  Score=29.13  Aligned_cols=95  Identities=19%  Similarity=0.238  Sum_probs=55.1

Q ss_pred             CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec---chHHHHHHHhhcCCCC
Q 029414           26 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSENE  101 (194)
Q Consensus        26 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~~~~  101 (194)
                      ++.+||-.|+| .|..+..+|+... -.++++++.+++..+.+++    .+..   .++..   +..+.+....     .
T Consensus       175 ~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~-----~  241 (350)
T cd08240         175 ADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAA-----G  241 (350)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHh-----C
Confidence            56778888764 3455566777653 2378888888777666533    2432   22221   1122222221     1


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +.+|+++ +....  ...+..+++.|+++|.++.-
T Consensus       242 ~~~d~vi-d~~g~--~~~~~~~~~~l~~~g~~v~~  273 (350)
T cd08240         242 GGVDAVI-DFVNN--SATASLAFDILAKGGKLVLV  273 (350)
T ss_pred             CCCcEEE-ECCCC--HHHHHHHHHHhhcCCeEEEE
Confidence            2689887 43211  23577788999999999863

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=85.30  E-value=3.1  Score=26.01  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=19.9

Q ss_pred             cCCCeEEEEcccccH-HHHHHHhhCCCCCEEEEEeC
Q 029414           25 VNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDV   59 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~iD~   59 (194)
                      ..|++||-+|+.+|+ .+..++..+..+...+++-.
T Consensus        37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f   72 (78)
T PF12242_consen   37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF   72 (78)
T ss_dssp             TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred             CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence            457899999999998 44344444443566666544

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=85.16  E-value=0.8  Score=35.99  Aligned_cols=39  Identities=15%  Similarity=0.175  Sum_probs=31.0

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchH
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY   64 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~   64 (194)
                      ...+++|||+|||+|.-.+......  ...++..|.+.+.+
T Consensus       114 ~~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  114 SFSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL  152 (282)
T ss_pred             EecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence            3478999999999999888776642  36788888888776

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=85.12  E-value=3.1  Score=33.18  Aligned_cols=47  Identities=15%  Similarity=0.138  Sum_probs=36.6

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK   73 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~   73 (194)
                      ...+++|+-+|+|......++++.   ..+|+++|+++..+..-+-+++.
T Consensus        61 ~g~ghrivtigSGGcn~L~ylsr~---Pa~id~VDlN~ahiAln~lklaA  107 (414)
T COG5379          61 LGIGHRIVTIGSGGCNMLAYLSRA---PARIDVVDLNPAHIALNRLKLAA  107 (414)
T ss_pred             cCCCcEEEEecCCcchHHHHhhcC---CceeEEEeCCHHHHHHHHHHHHH
Confidence            456789999999987777777764   57999999999887766655544

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=85.00  E-value=0.73  Score=38.72  Aligned_cols=103  Identities=14%  Similarity=0.066  Sum_probs=59.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc--hH-HHHHHHhhcCCCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE--AL-SVLDQLLKYSENE  101 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~-~~~~~~~~~~~~~  101 (194)
                      ++..+.++|+|.|.-........+. .-.++.||.+..+......+.....-  +-..+...  .. ..++.     +..
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~--~g~~~v~~~~~~r~~~pi-----~~~  272 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH--IGEPIVRKLVFHRQRLPI-----DIK  272 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh--cCchhccccchhcccCCC-----Ccc
Confidence            5678999999877644333333332 35689999999988887777654110  11111111  11 11122     124


Q ss_pred             CceeEEEEeCC------ccccHHHHHHH-HhcccCCeEEEE
Q 029414          102 GSFDYAFVDAD------KDNYCNYHERL-MKLLKVGGIAVY  135 (194)
Q Consensus       102 ~~fD~i~id~~------~~~~~~~~~~~-~~~L~~gG~lv~  135 (194)
                      ..||++++...      ........+.. .+..++|+.+|+
T Consensus       273 ~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi  313 (491)
T KOG2539|consen  273 NGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI  313 (491)
T ss_pred             cceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence            57999987743      22333334444 467789999887

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=84.97  E-value=15  Score=30.04  Aligned_cols=80  Identities=20%  Similarity=0.046  Sum_probs=44.4

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEec
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +..+||-+|||. |...+....... -++++.+|.+.                   ...+.+++++.+.+..-+++.+..
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~  105 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAG-VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR  105 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence            567899999985 443333222322 57888888765                   233556667766543333444433


Q ss_pred             chHH-HHHHHhhcCCCCCceeEEEEeCC
Q 029414           86 EALS-VLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        86 d~~~-~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      .... ....+      ...||+|+...+
T Consensus       106 ~i~~~~~~~~------~~~~DvVvd~~d  127 (355)
T PRK05597        106 RLTWSNALDE------LRDADVILDGSD  127 (355)
T ss_pred             ecCHHHHHHH------HhCCCEEEECCC
Confidence            3321 12222      257998876554

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=84.81  E-value=21  Score=29.47  Aligned_cols=125  Identities=14%  Similarity=0.060  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      |....+=..++.......++-..+|++.....+...+.++.+|+..+..-. ....+.......+.  +++++..+..+.
T Consensus        50 Pt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi--~v~~~d~~~~e~  127 (377)
T TIGR01324        50 LTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGV--DITYYDPLIGED  127 (377)
T ss_pred             ccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCc--EEEEECCCCHHH
Confidence            444455555555556667777777777666555444555778887765432 22223333444443  344442222133


Q ss_pred             HHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEeccccccc
Q 029414           91 LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTLWGGT  143 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~g~  143 (194)
                      +....     .+...+|++...  .......++.+.++.+. |..+++|++...|.
T Consensus       128 l~~~i-----~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~  178 (377)
T TIGR01324       128 IATLI-----QPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGL  178 (377)
T ss_pred             HHHhc-----CCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence            33321     245678888754  23334456666666655 45566677655443

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=84.74  E-value=12  Score=26.70  Aligned_cols=117  Identities=19%  Similarity=0.150  Sum_probs=63.4

Q ss_pred             eEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414           29 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  107 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i  107 (194)
                      +|-=||.  |..+..+|+.+. .+..|+..|.+++..+...+.    +    ++.. .+..+...          ..|+|
T Consensus         3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g----~~~~-~s~~e~~~----------~~dvv   61 (163)
T PF03446_consen    3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----G----AEVA-DSPAEAAE----------QADVV   61 (163)
T ss_dssp             EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----T----EEEE-SSHHHHHH----------HBSEE
T ss_pred             EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----h----hhhh-hhhhhHhh----------cccce
Confidence            4555666  555555555442 267899999988666554432    2    3333 34444433          35888


Q ss_pred             EEeCC-ccccHHHHHH--HHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecC
Q 029414          108 FVDAD-KDNYCNYHER--LMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG  184 (194)
Q Consensus       108 ~id~~-~~~~~~~~~~--~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~  184 (194)
                      +..-. .....+.+..  +...|++|.+++-....                   .....+++.+.+.. .++...--|+.
T Consensus        62 i~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~-------------------~p~~~~~~~~~~~~-~g~~~vdapV~  121 (163)
T PF03446_consen   62 ILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTI-------------------SPETSRELAERLAA-KGVRYVDAPVS  121 (163)
T ss_dssp             EE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS---------------------HHHHHHHHHHHHH-TTEEEEEEEEE
T ss_pred             EeecccchhhhhhhhhhHHhhccccceEEEecCCc-------------------chhhhhhhhhhhhh-ccceeeeeeee
Confidence            87654 3455666666  77888887777654332                   11224555555543 44777777765


Q ss_pred             Ce
Q 029414          185 DG  186 (194)
Q Consensus       185 ~G  186 (194)
                      .|
T Consensus       122 Gg  123 (163)
T PF03446_consen  122 GG  123 (163)
T ss_dssp             SH
T ss_pred             cc
Confidence            44

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=84.63  E-value=22  Score=29.64  Aligned_cols=100  Identities=15%  Similarity=0.156  Sum_probs=52.7

Q ss_pred             eEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHH------------HHHcCCCCcEEEEecchHHHHHHH
Q 029414           29 KTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        29 ~vLeiG~G~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      +|--+|+|. |. .+..||+.   +..|+|+|+++..++..++.            +.+.....++++- .|..+..   
T Consensus         2 kI~viGtGYVGLv~g~~lA~~---GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fT-td~~~a~---   74 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAEL---GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFT-TDYEEAV---   74 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHc---CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEE-cCHHHHH---
Confidence            455666643 21 23334443   46899999999877654432            2222212223333 2332221   


Q ss_pred             hhcCCCCCceeEEEEeCC---c-------cccHHHHHHHHhcccCCeEEEEecccccc
Q 029414           95 LKYSENEGSFDYAFVDAD---K-------DNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~---~-------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                             ..-|++|+.-.   .       ....+..+.+.+.++..-++|.-.+...|
T Consensus        75 -------~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvG  125 (414)
T COG1004          75 -------KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVG  125 (414)
T ss_pred             -------hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Confidence                   34678887643   1       12244456666777776777776555444

>PRK07582 cystathionine gamma-lyase; Validated

Probab=84.50  E-value=19  Score=29.52  Aligned_cols=118  Identities=12%  Similarity=0.066  Sum_probs=64.2

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      ++....+-..++... +..++-+++|+......+...+.++.+|+..+..- .....++..+...|.  ++.++..+...
T Consensus        50 ~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v~~~~~~  126 (366)
T PRK07582         50 NPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREAPTAGMA  126 (366)
T ss_pred             CccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEECCCChH
Confidence            455566666666666 56677788888766555544455577888876544 233344444444553  34444332211


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhccc-CCeEEEEeccc
Q 029414           90 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLK-VGGIAVYDNTL  139 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~  139 (194)
                        ...      .+..++|++..+  +......++.+.+..+ .|..+++|++.
T Consensus       127 --~~~------~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~  171 (366)
T PRK07582        127 --EAA------LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTT  171 (366)
T ss_pred             --HHh------ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence              111      245688887644  1111223455555554 35667777764

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=84.25  E-value=22  Score=29.40  Aligned_cols=124  Identities=12%  Similarity=0.125  Sum_probs=63.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .+|...++-..++........+-+++|+......+...+.++.+|+..+.... .....+..+...|.  .+.++..+..
T Consensus        57 ~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~--~~~~vd~~d~  134 (391)
T TIGR01328        57 GNPTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGI--QVDFINMAIP  134 (391)
T ss_pred             CCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCe--EEEEECCCCH
Confidence            34556666666777666666777777776555555444555777877664322 33333444444443  3444443322


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEecccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTLW  140 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  140 (194)
                      +.+....     .+.-.+|++..+  .......++.+.++.+. |..+++|++..
T Consensus       135 e~l~~~i-----~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a  184 (391)
T TIGR01328       135 EEVKAHI-----KDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFA  184 (391)
T ss_pred             HHHHHhh-----ccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence            3232221     234678887643  11111123444444443 45666676653

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=84.16  E-value=19  Score=28.59  Aligned_cols=102  Identities=22%  Similarity=0.179  Sum_probs=52.9

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec---chHHHHHHHhhcC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYS   98 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~   98 (194)
                      ..++.+||-.|+  +.|..+..+|+..  +.+++.+..+++..+.-++.+...+...-+.....   +..+.+..+.   
T Consensus       144 ~~~g~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~---  218 (341)
T cd08290         144 LQPGDWVIQNGANSAVGQAVIQLAKLL--GIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAP---  218 (341)
T ss_pred             cCCCCEEEEccchhHHHHHHHHHHHHc--CCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHc---
Confidence            446778888874  5677777788875  45655554444222222333333443211111111   2222222221   


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                        .+.+|+|+ |....   ..+..+++.|+++|.++.-
T Consensus       219 --~~~~d~vl-d~~g~---~~~~~~~~~l~~~G~~v~~  250 (341)
T cd08290         219 --GGRPKLAL-NCVGG---KSATELARLLSPGGTMVTY  250 (341)
T ss_pred             --CCCceEEE-ECcCc---HhHHHHHHHhCCCCEEEEE
Confidence              12689887 43222   1234567889999998853

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=84.05  E-value=5.2  Score=33.13  Aligned_cols=59  Identities=17%  Similarity=0.244  Sum_probs=45.7

Q ss_pred             CcEEEEecchHHHHHHHhhcCCCCCceeEEEE-eCC----ccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414           78 HKINFIESEALSVLDQLLKYSENEGSFDYAFV-DAD----KDNYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus        78 ~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~i-d~~----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      +++++++++..+.+....     .+++|.+.+ |..    .+...+.++.+.+.++|||.+++.+....
T Consensus       275 drv~i~t~si~~~L~~~~-----~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~  338 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRLP-----PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP  338 (380)
T ss_pred             CeEEEEeccHHHHHHhCC-----CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence            599999999999887642     478998754 332    45667778889999999999999776543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=83.99  E-value=3.6  Score=31.93  Aligned_cols=106  Identities=15%  Similarity=0.120  Sum_probs=66.7

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCC-----------CCEEEEEeCCcchHHhHH------------HHHH-----------
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPE-----------DGQITAIDVNRETYEIGL------------PIIK-----------   72 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~-----------~~~v~~iD~~~~~~~~a~------------~~~~-----------   72 (194)
                      .-.|+|+|-|+|...+.+-...+.           .-++++++.+|-......            +.+.           
T Consensus        59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~  138 (252)
T COG4121          59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA  138 (252)
T ss_pred             ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence            347999999999877665444431           235788888774322111            1111           


Q ss_pred             ---HcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--c----cHHHHHHHHhcccCCeEEEEe
Q 029414           73 ---KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--N----YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        73 ---~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~----~~~~~~~~~~~L~~gG~lv~~  136 (194)
                         ..+ .-+..++.||+.+.++.....   .+++|+.|.|+..+  +    ...++..+.+..++||.+...
T Consensus       139 r~~~~g-~~~l~l~~gd~~~~~p~~~~~---~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~  207 (252)
T COG4121         139 AAVRHG-LLLLGLVIGDAGDGIPPVPRR---RPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATF  207 (252)
T ss_pred             Hhhhcc-hheeeeeeeehhhcCCccccc---ccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceech
Confidence               112 124667888888776665211   12799999997621  1    256688888999999999874

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=83.30  E-value=15  Score=26.69  Aligned_cols=76  Identities=21%  Similarity=0.125  Sum_probs=40.2

Q ss_pred             eEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCc------------------chHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           29 KTIEIGVFT-GYS-LLLTALTIPEDGQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        29 ~vLeiG~G~-G~~-~~~la~~~~~~~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      +|+-+|||. |.. +..+++. + -++++.+|.+.                  ...+.+++++.+....-+++.+.....
T Consensus         1 ~VlViG~GglGs~ia~~La~~-G-vg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~   78 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARS-G-VGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKID   78 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHc-C-CCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence            478899974 443 3334443 2 46899999875                  122344555554432224444443332


Q ss_pred             H-HHHHHhhcCCCCCceeEEEEeCC
Q 029414           89 S-VLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        89 ~-~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      + ....+      -..+|+|+...+
T Consensus        79 ~~~~~~~------l~~~DlVi~~~d   97 (174)
T cd01487          79 ENNLEGL------FGDCDIVVEAFD   97 (174)
T ss_pred             hhhHHHH------hcCCCEEEECCC
Confidence            2 22333      257998876543

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=83.16  E-value=13  Score=30.71  Aligned_cols=122  Identities=15%  Similarity=0.069  Sum_probs=60.7

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEec-chH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIES-EAL   88 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~-d~~   88 (194)
                      ++...++-..++........+-+++|+......+...+.++.+|+..+..-. ........+...+.  ++.+... |..
T Consensus        60 ~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi--~~~~~d~~d~e  137 (388)
T PRK07811         60 NPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGV--EYTPVDLSDLD  137 (388)
T ss_pred             CccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCe--EEEEeCCCCHH
Confidence            3455666666666666566677777765555444444555778887665332 22222222222232  2333222 333


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEecccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTLW  140 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  140 (194)
                      ++...+      .+...+|++..+  +......++.+.++.+. |..+++|++..
T Consensus       138 ~l~~~i------~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a  186 (388)
T PRK07811        138 AVRAAI------TPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFA  186 (388)
T ss_pred             HHHHhc------CcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence            332222      235678887643  21122334445454444 55666776543

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=83.08  E-value=27  Score=29.47  Aligned_cols=128  Identities=13%  Similarity=0.181  Sum_probs=72.5

Q ss_pred             CCCeEEEEcc-ccc--HHHHHHHhhCC---CCCEEEEEeCC-cchHHhHHHHHHHcCCCCcEEE-EecchHHHHHHHhhc
Q 029414           26 NAKKTIEIGV-FTG--YSLLLTALTIP---EDGQITAIDVN-RETYEIGLPIIKKAGVDHKINF-IESEALSVLDQLLKY   97 (194)
Q Consensus        26 ~~~~vLeiG~-G~G--~~~~~la~~~~---~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~v~~-~~~d~~~~~~~~~~~   97 (194)
                      +|..|+-+|- |+|  .++.-+|..+.   ...-+++.|.. |.+++..+...++.+++ -... -..|+.++...-...
T Consensus        99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~-~f~~~~~~~Pv~Iak~al~~  177 (451)
T COG0541          99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVP-FFGSGTEKDPVEIAKAALEK  177 (451)
T ss_pred             CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCc-eecCCCCCCHHHHHHHHHHH
Confidence            4567888874 333  23333444432   24568888965 45677777777777654 1111 112333332221000


Q ss_pred             CCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHh
Q 029414           98 SENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSL  170 (194)
Q Consensus        98 ~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (194)
                       -....||+|++|-.     .+....-+..+...++|+=+|++-|....-       .        .....++|++.+
T Consensus       178 -ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ-------d--------A~~~A~aF~e~l  239 (451)
T COG0541         178 -AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ-------D--------AVNTAKAFNEAL  239 (451)
T ss_pred             -HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch-------H--------HHHHHHHHhhhc
Confidence             01367999999965     233445567778899999888776654211       1        444478888877

>PRK08223 hypothetical protein; Validated

Probab=82.98  E-value=22  Score=28.30  Aligned_cols=78  Identities=17%  Similarity=0.098  Sum_probs=44.2

Q ss_pred             CCCeEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEe
Q 029414           26 NAKKTIEIGVFT-GYS-LLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~-~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      +..+|+-+|||. |.. +..||.. . -++++.+|.+.                   ...+.+++.+.+.+..-+++.+.
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~a-G-VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~  103 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARL-G-IGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP  103 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHh-C-CCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            567899999984 554 4445544 3 57888888754                   12345666666554333444444


Q ss_pred             cchHH-HHHHHhhcCCCCCceeEEEEeCC
Q 029414           85 SEALS-VLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        85 ~d~~~-~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      ....+ ...++      -..+|+|+ |+.
T Consensus       104 ~~l~~~n~~~l------l~~~DlVv-D~~  125 (287)
T PRK08223        104 EGIGKENADAF------LDGVDVYV-DGL  125 (287)
T ss_pred             cccCccCHHHH------HhCCCEEE-ECC
Confidence            33221 22233      25799886 543

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=82.81  E-value=26  Score=29.02  Aligned_cols=124  Identities=14%  Similarity=0.151  Sum_probs=64.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEec-ch
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIES-EA   87 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~-d~   87 (194)
                      .++....+-..++.......++-..+|++.....+...+.++.+|+..+..-. ............+.  .+.++.. |.
T Consensus        50 ~~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi--~v~~vd~~d~  127 (386)
T PRK08045         50 GNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY--RVLFVDQGDE  127 (386)
T ss_pred             CCccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe--EEEEeCCCCH
Confidence            34556667777777666666777777776665555444555778887765443 33333333322221  2344322 33


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEeccccc
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTLWG  141 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~  141 (194)
                      .++...+      .++-++|++..+  +......++.+.++.+. |..+++|++...
T Consensus       128 e~l~~~l------~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~  178 (386)
T PRK08045        128 QALRAAL------AEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLS  178 (386)
T ss_pred             HHHHHhc------ccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCc
Confidence            3332222      235688887744  11111113344444433 566777776543

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=82.75  E-value=22  Score=28.31  Aligned_cols=98  Identities=16%  Similarity=0.243  Sum_probs=57.3

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEec---chHHHHHHHhhcC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYS   98 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~   98 (194)
                      ..++.+||-.|+| .|..++.+|+..  +.+ ++++..+++..+.+++    .+..   .++..   +..+.+....   
T Consensus       163 ~~~g~~VlV~g~g~vg~~~~~la~~~--g~~~v~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~---  230 (343)
T cd08235         163 IKPGDTVLVIGAGPIGLLHAMLAKAS--GARKVIVSDLNEFRLEFAKK----LGAD---YTIDAAEEDLVEKVRELT---  230 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCc---EEecCCccCHHHHHHHHh---
Confidence            3456788888764 556666677764  456 8888888777665532    3432   22221   2222222221   


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                       ....+|+++-....   ...+..+++.|+++|.++.-.
T Consensus       231 -~~~~vd~vld~~~~---~~~~~~~~~~l~~~g~~v~~~  265 (343)
T cd08235         231 -DGRGADVVIVATGS---PEAQAQALELVRKGGRILFFG  265 (343)
T ss_pred             -CCcCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEEe
Confidence             12458987743221   245677789999999988743

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=82.50  E-value=22  Score=27.92  Aligned_cols=98  Identities=19%  Similarity=0.139  Sum_probs=55.4

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++.+||-.|+  +.|..+..+|+..  +.+++.+..+++..+.+++    .+...-+.....+..+.+....    ..
T Consensus       136 ~~~~~~vlI~g~~~~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~  205 (323)
T cd05282         136 LPPGDWVIQNAANSAVGRMLIQLAKLL--GFKTINVVRRDEQVEELKA----LGADEVIDSSPEDLAQRVKEAT----GG  205 (323)
T ss_pred             CCCCCEEEEcccccHHHHHHHHHHHHC--CCeEEEEecChHHHHHHHh----cCCCEEecccchhHHHHHHHHh----cC
Confidence            345678888876  4677778888875  5678888777766555532    3432111111112222222221    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ..+|+++ +.....   ....+++.++++|.++.
T Consensus       206 ~~~d~vl-~~~g~~---~~~~~~~~l~~~g~~v~  235 (323)
T cd05282         206 AGARLAL-DAVGGE---SATRLARSLRPGGTLVN  235 (323)
T ss_pred             CCceEEE-ECCCCH---HHHHHHHhhCCCCEEEE
Confidence            4699887 433221   23456789999999885

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=82.46  E-value=21  Score=27.80  Aligned_cols=96  Identities=19%  Similarity=0.220  Sum_probs=59.4

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++.+||-.|+  +.|..+..+|+..  +.+++++..+++..+.++    ..+.. .+-....+..+.+..+      .
T Consensus       140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~-~~~~~~~~~~~~i~~~------~  206 (320)
T cd08243         140 LQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLK----ELGAD-EVVIDDGAIAEQLRAA------P  206 (320)
T ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCc-EEEecCccHHHHHHHh------C
Confidence            446778888885  5677888888875  577888888876655543    23432 2211122222222222      2


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+|+++ +....   ..+..+++.++++|.++.-
T Consensus       207 ~~~d~vl-~~~~~---~~~~~~~~~l~~~g~~v~~  237 (320)
T cd08243         207 GGFDKVL-ELVGT---ATLKDSLRHLRPGGIVCMT  237 (320)
T ss_pred             CCceEEE-ECCCh---HHHHHHHHHhccCCEEEEE
Confidence            5699887 33221   3567788999999999864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=82.45  E-value=23  Score=28.25  Aligned_cols=99  Identities=15%  Similarity=0.167  Sum_probs=56.9

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-cchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~  101 (194)
                      ..+..+||-.|+| .|..+..+|+..  +.+++++..+++..+.+++    .+...-+.... .+..+.+..+.     .
T Consensus       163 ~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~-----~  231 (345)
T cd08260         163 VKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAAAVRDLT-----G  231 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHHHHHHHh-----C
Confidence            3456788888853 344556666664  5789999888877666643    34321112111 12222222221     2


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +.+|+++-....   ...+..+++.|+++|.++.-
T Consensus       232 ~~~d~vi~~~g~---~~~~~~~~~~l~~~g~~i~~  263 (345)
T cd08260         232 GGAHVSVDALGI---PETCRNSVASLRKRGRHVQV  263 (345)
T ss_pred             CCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEEe
Confidence            379988743211   34567788999999998863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=82.44  E-value=20  Score=28.18  Aligned_cols=99  Identities=17%  Similarity=0.126  Sum_probs=56.2

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-cchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~  101 (194)
                      ..++.+|+-.|+| .|..+..+|+..  +.+++.++.+++..+.+++    .+...-+.... .+..+.+....    ..
T Consensus       158 ~~~g~~vli~g~g~~g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~~  227 (336)
T cd08276         158 LKPGDTVLVQGTGGVSLFALQFAKAA--GARVIATSSSDEKLERAKA----LGADHVINYRTTPDWGEEVLKLT----GG  227 (336)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEcCCcccCHHHHHHHHc----CC
Confidence            3455666666553 445556666664  5789999888877666654    23321111111 22333333331    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+|+++- ...   ...+..+++.++++|.++.-
T Consensus       228 ~~~d~~i~-~~~---~~~~~~~~~~l~~~G~~v~~  258 (336)
T cd08276         228 RGVDHVVE-VGG---PGTLAQSIKAVAPGGVISLI  258 (336)
T ss_pred             CCCcEEEE-CCC---hHHHHHHHHhhcCCCEEEEE
Confidence            46898874 321   23467788999999998863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=82.30  E-value=19  Score=27.13  Aligned_cols=93  Identities=13%  Similarity=0.038  Sum_probs=48.7

Q ss_pred             CCCeEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCc------------------chHHhHHHHHHHcCCCCcEEEEec
Q 029414           26 NAKKTIEIGVFT-GYS-LLLTALTIPEDGQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~-~~~la~~~~~~~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +..+|+-+|||. |.. +..++.. . -++++.+|.+.                  ...+.+++++.+.+..-+++.+..
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~-G-vg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~  104 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARS-G-VGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE  104 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHc-C-CCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence            567899999984 443 3334443 3 47899999873                  123445556655443234444443


Q ss_pred             chHH-HHHHHhhcCCCCCceeEEEEeCC-ccccHHHHHHHHhc
Q 029414           86 EALS-VLDQLLKYSENEGSFDYAFVDAD-KDNYCNYHERLMKL  126 (194)
Q Consensus        86 d~~~-~~~~~~~~~~~~~~fD~i~id~~-~~~~~~~~~~~~~~  126 (194)
                      ...+ ...++      ...||+|+...+ ........+.+.+.
T Consensus       105 ~i~~~~~~~~------~~~~DvVI~a~D~~~~r~~l~~~~~~~  141 (212)
T PRK08644        105 KIDEDNIEEL------FKDCDIVVEAFDNAETKAMLVETVLEH  141 (212)
T ss_pred             ecCHHHHHHH------HcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence            3322 22233      257998875433 22223344445444

>PLN02702 L-idonate 5-dehydrogenase

Probab=82.18  E-value=23  Score=28.65  Aligned_cols=102  Identities=17%  Similarity=0.203  Sum_probs=56.9

Q ss_pred             cCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE--ecchHHHHHHHhhcCCCC
Q 029414           25 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYSENE  101 (194)
Q Consensus        25 ~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~~~~~~  101 (194)
                      .++.+||-.|+| .|..+..+|+... -..+++++.+++..+.+++    .+.+..+.+.  ..+..+.+..+...  ..
T Consensus       180 ~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~--~~  252 (364)
T PLN02702        180 GPETNVLVMGAGPIGLVTMLAARAFG-APRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKA--MG  252 (364)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhh--cC
Confidence            356788888764 3556667777653 3458888887766655443    3433222211  12332322222100  02


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +.+|+++-....   ...+..+++.|+++|.++.-
T Consensus       253 ~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~  284 (364)
T PLN02702        253 GGIDVSFDCVGF---NKTMSTALEATRAGGKVCLV  284 (364)
T ss_pred             CCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence            468977643221   24578888999999998864

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=82.12  E-value=4.7  Score=33.35  Aligned_cols=50  Identities=16%  Similarity=0.086  Sum_probs=34.3

Q ss_pred             HHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHH
Q 029414           16 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGL   68 (194)
Q Consensus        16 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~   68 (194)
                      ......+...+.++||-|.+|.....-+ +...  ..+|++||.||......+
T Consensus        25 ~vD~~aL~i~~~d~vl~ItSaG~N~L~y-L~~~--P~~I~aVDlNp~Q~aLle   74 (380)
T PF11899_consen   25 RVDMEALNIGPDDRVLTITSAGCNALDY-LLAG--PKRIHAVDLNPAQNALLE   74 (380)
T ss_pred             HHHHHHhCCCCCCeEEEEccCCchHHHH-HhcC--CceEEEEeCCHHHHHHHH
Confidence            3445566677888999999865554444 4432  479999999997665443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=82.10  E-value=27  Score=28.79  Aligned_cols=122  Identities=13%  Similarity=0.109  Sum_probs=63.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-cchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .+|....+-..++........+-+++|+......++ .+.++.+|+..+.. +.........+...+.  .+.++..+..
T Consensus        48 ~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi--~v~~vd~~d~  124 (380)
T PRK06176         48 GNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LFQSGDHVLLGDDVYGGTFRLFDKVLVKNGL--SCTIIDTSDL  124 (380)
T ss_pred             CChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-HcCCCCEEEEcCCChhHHHHHHHHHHHhcCe--EEEEcCCCCH
Confidence            345566666666666666667888888876655454 44557788887642 2233333444444543  2333333222


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccC-CeEEEEeccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTL  139 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~  139 (194)
                      +.+....     .+...+|++..+  +......++.+.++.+. |..+++|++.
T Consensus       125 e~l~~ai-----~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~  173 (380)
T PRK06176        125 SQIKKAI-----KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTF  173 (380)
T ss_pred             HHHHHhc-----CcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCc
Confidence            3333321     245678887533  11111224445555554 4555566554

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=81.98  E-value=9.3  Score=30.91  Aligned_cols=100  Identities=20%  Similarity=0.168  Sum_probs=59.8

Q ss_pred             CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      +++++--+|.| .|..+..+|+++  +.+|+++|.+...-+.+   +...|-+.-+... .|. +....+      .+..
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea---~~~LGAd~fv~~~-~d~-d~~~~~------~~~~  247 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEA---IKSLGADVFVDST-EDP-DIMKAI------MKTT  247 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHH---HHhcCcceeEEec-CCH-HHHHHH------HHhh
Confidence            56677777754 688999999987  58999999987544433   4444644222222 122 333333      1345


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      |.+.-... .-....++.+..+||++|.+|+-...
T Consensus       248 dg~~~~v~-~~a~~~~~~~~~~lk~~Gt~V~vg~p  281 (360)
T KOG0023|consen  248 DGGIDTVS-NLAEHALEPLLGLLKVNGTLVLVGLP  281 (360)
T ss_pred             cCcceeee-eccccchHHHHHHhhcCCEEEEEeCc
Confidence            54432211 01234467788999999999985443

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=81.98  E-value=24  Score=28.05  Aligned_cols=99  Identities=17%  Similarity=0.151  Sum_probs=54.6

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .++.+||-.|+|. |..+..+|+... ..++++++.+++..+.++    ..+.. .+--...+..+.+..+.    ....
T Consensus       166 ~~~~~vlI~g~~~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~----~~g~~-~~~~~~~~~~~~i~~~~----~~~~  235 (340)
T cd05284         166 DPGSTVVVIGVGGLGHIAVQILRALT-PATVIAVDRSEEALKLAE----RLGAD-HVLNASDDVVEEVRELT----GGRG  235 (340)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHH----HhCCc-EEEcCCccHHHHHHHHh----CCCC
Confidence            4567888888543 334444565542 268888888877665553    33432 11111111222222221    1246


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|+++-....   ...++.+++.|+++|.++.-
T Consensus       236 ~dvvld~~g~---~~~~~~~~~~l~~~g~~i~~  265 (340)
T cd05284         236 ADAVIDFVGS---DETLALAAKLLAKGGRYVIV  265 (340)
T ss_pred             CCEEEEcCCC---HHHHHHHHHHhhcCCEEEEE
Confidence            9988743221   24567788999999999863

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=81.96  E-value=17  Score=29.25  Aligned_cols=100  Identities=16%  Similarity=0.126  Sum_probs=54.2

Q ss_pred             cCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .++.+||-.|+| .|..+..+|+... ...+++++.+++....++    ..+...-+.....+..+.+..+.    ....
T Consensus       173 ~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~----~~~~  243 (350)
T cd08256         173 KFDDVVVLAGAGPLGLGMIGAARLKN-PKKLIVLDLKDERLALAR----KFGADVVLNPPEVDVVEKIKELT----GGYG  243 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCHHHHHHHH----HcCCcEEecCCCcCHHHHHHHHh----CCCC
Confidence            345666665553 3456666777754 346788888776554433    33432111111122323333321    1235


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|+++ |....  ...+..+++.++++|.++.-
T Consensus       244 vdvvl-d~~g~--~~~~~~~~~~l~~~G~~v~~  273 (350)
T cd08256         244 CDIYI-EATGH--PSAVEQGLNMIRKLGRFVEF  273 (350)
T ss_pred             CCEEE-ECCCC--hHHHHHHHHHhhcCCEEEEE
Confidence            89776 43221  23467788999999998864

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=81.74  E-value=3.4  Score=30.80  Aligned_cols=38  Identities=16%  Similarity=0.177  Sum_probs=27.1

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchH
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETY   64 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~   64 (194)
                      ...++++|-+|++. |..+..+..   +..+|+.+|++|.+.
T Consensus        42 ~~E~~~vli~G~YltG~~~a~~Ls---~~~~vtv~Di~p~~r   80 (254)
T COG4017          42 GEEFKEVLIFGVYLTGNYTAQMLS---KADKVTVVDIHPFMR   80 (254)
T ss_pred             ccCcceEEEEEeeehhHHHHHHhc---ccceEEEecCCHHHH
Confidence            34578999999984 545444443   478999999998543

>PRK07063 short chain dehydrogenase; Provisional

Probab=81.70  E-value=21  Score=27.20  Aligned_cols=85  Identities=14%  Similarity=0.150  Sum_probs=48.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-CCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE  101 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~~~  101 (194)
                      +++++|-.|+..| .+..+++.+ ..+.+|+.++.+++..+...+.+.......++.++..|..+.  ...+..+. ...
T Consensus         6 ~~k~vlVtGas~g-IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          6 AGKVALVTGAAQG-IGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4678898887543 334333333 136789999998887777766665432234677777775321  11111100 013


Q ss_pred             CceeEEEEeC
Q 029414          102 GSFDYAFVDA  111 (194)
Q Consensus       102 ~~fD~i~id~  111 (194)
                      +.+|.++...
T Consensus        85 g~id~li~~a   94 (260)
T PRK07063         85 GPLDVLVNNA   94 (260)
T ss_pred             CCCcEEEECC
Confidence            5789887654

>PRK08507 prephenate dehydrogenase; Validated

Probab=81.65  E-value=4.5  Score=31.66  Aligned_cols=84  Identities=19%  Similarity=0.189  Sum_probs=47.7

Q ss_pred             eEEEEcccccHHHHHHHhhCCCC---CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           29 KTIEIGVFTGYSLLLTALTIPED---GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~~~---~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      +|.=||+|  ..+..++..+...   .+|+++|.+++..+.+++    .+....   . .+.    ...       ...|
T Consensus         2 ~I~iIG~G--~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~~~---~-~~~----~~~-------~~aD   60 (275)
T PRK08507          2 KIGIIGLG--LMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLVDE---I-VSF----EEL-------KKCD   60 (275)
T ss_pred             EEEEEccC--HHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCCcc---c-CCH----HHH-------hcCC
Confidence            46667764  4444444433212   378999998877665432    332111   1 121    112       1279


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEE
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAV  134 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv  134 (194)
                      +|++..+.......++.+.+ ++++.+++
T Consensus        61 ~Vilavp~~~~~~~~~~l~~-l~~~~iv~   88 (275)
T PRK08507         61 VIFLAIPVDAIIEILPKLLD-IKENTTII   88 (275)
T ss_pred             EEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence            99988776666777777777 77766444

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=81.62  E-value=10  Score=27.64  Aligned_cols=88  Identities=13%  Similarity=0.048  Sum_probs=48.6

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .+++|.-+|+|. |......++.+  +.+|+++|.++....    .+...    .+  ...+..+.+.          ..
T Consensus        35 ~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~----~~~~~----~~--~~~~l~ell~----------~a   92 (178)
T PF02826_consen   35 RGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEE----GADEF----GV--EYVSLDELLA----------QA   92 (178)
T ss_dssp             TTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHH----HHHHT----TE--EESSHHHHHH----------H-
T ss_pred             CCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhh----hcccc----cc--eeeehhhhcc----------hh
Confidence            578999999864 44444455554  579999999886444    11111    22  2224444433          36


Q ss_pred             eEEEEeCCc-cccHHH-HHHHHhcccCCeEEEE
Q 029414          105 DYAFVDADK-DNYCNY-HERLMKLLKVGGIAVY  135 (194)
Q Consensus       105 D~i~id~~~-~~~~~~-~~~~~~~L~~gG~lv~  135 (194)
                      |+|++..+. +....+ =+..+..+|+|.+||=
T Consensus        93 Div~~~~plt~~T~~li~~~~l~~mk~ga~lvN  125 (178)
T PF02826_consen   93 DIVSLHLPLTPETRGLINAEFLAKMKPGAVLVN  125 (178)
T ss_dssp             SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEE
T ss_pred             hhhhhhhccccccceeeeeeeeeccccceEEEe
Confidence            888887652 222122 2445688888776553

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=81.58  E-value=15  Score=25.46  Aligned_cols=78  Identities=17%  Similarity=0.214  Sum_probs=39.8

Q ss_pred             eEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           29 KTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        29 ~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      +|+-+||| .|...+......+ -++++.+|.+.                   ...+.+++++.+....-+++.+.....
T Consensus         1 ~VliiG~GglGs~ia~~L~~~G-v~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSG-VGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence            47888986 3443333222222 46899998762                   123345556655442223444443332


Q ss_pred             HH-HHHHhhcCCCCCceeEEEEeCCc
Q 029414           89 SV-LDQLLKYSENEGSFDYAFVDADK  113 (194)
Q Consensus        89 ~~-~~~~~~~~~~~~~fD~i~id~~~  113 (194)
                      +. ...+      ...+|+|+...+.
T Consensus        80 ~~~~~~~------~~~~diVi~~~d~   99 (143)
T cd01483          80 EDNLDDF------LDGVDLVIDAIDN   99 (143)
T ss_pred             hhhHHHH------hcCCCEEEECCCC
Confidence            21 1222      2679988876553

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06153 hypothetical protein; Provisional

Probab=81.58  E-value=30  Score=28.85  Aligned_cols=97  Identities=18%  Similarity=0.111  Sum_probs=52.0

Q ss_pred             HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc----------------------chHHhHHHHHHHcCCCCc
Q 029414           23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR----------------------ETYEIGLPIIKKAGVDHK   79 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~----------------------~~~~~a~~~~~~~~~~~~   79 (194)
                      ...+..+|+-+|||. |...+......+ -++++.+|.+.                      .-.+.+++++.+.+  ..
T Consensus       172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~G-VgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in--~~  248 (393)
T PRK06153        172 AKLEGQRIAIIGLGGTGSYILDLVAKTP-VREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMR--RG  248 (393)
T ss_pred             HHHhhCcEEEEcCCccHHHHHHHHHHcC-CCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhC--Ce
Confidence            344568899999985 544444444444 68999999752                      11223455555443  24


Q ss_pred             EEEEecchHH-HHHHHhhcCCCCCceeEEEEeCCccccHH-HHHHHHhcccC
Q 029414           80 INFIESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCN-YHERLMKLLKV  129 (194)
Q Consensus        80 v~~~~~d~~~-~~~~~~~~~~~~~~fD~i~id~~~~~~~~-~~~~~~~~L~~  129 (194)
                      +..+.....+ ....+       ..+|+||...+...... ..+.+.+...|
T Consensus       249 I~~~~~~I~~~n~~~L-------~~~DiV~dcvDn~~aR~~ln~~a~~~gIP  293 (393)
T PRK06153        249 IVPHPEYIDEDNVDEL-------DGFTFVFVCVDKGSSRKLIVDYLEALGIP  293 (393)
T ss_pred             EEEEeecCCHHHHHHh-------cCCCEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence            5444333221 22222       57999987665333333 33445554444

>PRK07411 hypothetical protein; Validated

Probab=81.48  E-value=23  Score=29.47  Aligned_cols=96  Identities=19%  Similarity=0.118  Sum_probs=51.1

Q ss_pred             CCCeEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCcc-------------------hHHhHHHHHHHcCCCCcEEEEe
Q 029414           26 NAKKTIEIGVFT-GYS-LLLTALTIPEDGQITAIDVNRE-------------------TYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~-~~~la~~~~~~~~v~~iD~~~~-------------------~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      +..+||-+|||. |.. +..|+.. + -++++.+|.+.-                   ..+.+++++.+.+..-+++.+.
T Consensus        37 ~~~~VlivG~GGlG~~va~~La~~-G-vg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~  114 (390)
T PRK07411         37 KAASVLCIGTGGLGSPLLLYLAAA-G-IGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYE  114 (390)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHc-C-CCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEe
Confidence            457899999984 433 3334433 2 578888887541                   2345666666554333455555


Q ss_pred             cchHH-HHHHHhhcCCCCCceeEEEEeCCccccHHHH-HHHHhcccC
Q 029414           85 SEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYH-ERLMKLLKV  129 (194)
Q Consensus        85 ~d~~~-~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~-~~~~~~L~~  129 (194)
                      ..... ....+      -..||+|+...+.......+ +.|...-+|
T Consensus       115 ~~~~~~~~~~~------~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        115 TRLSSENALDI------LAPYDVVVDGTDNFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             cccCHHhHHHH------HhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence            44332 22233      25799887654433333333 334444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	194
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		3e-75
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		5e-64
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		2e-31
3cbg_A	232	Functional And Structural Characterization Of A Cat		5e-31
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		2e-29
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		1e-25
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		1e-23
3tfw_A	248	Crystal Structure Of A Putative O-Methyltransferase		1e-16
3dul_A	223	Crystal Structure Analysis Of The O-Methyltransfera		2e-12
2gpy_A	233	Crystal Structure Of Putative O-methyltransferase F		7e-11
3ntv_A	232	Crystal Structure Of A Putative Caffeoyl-Coa O-Meth		1e-07
3oe4_A	221	Rat Catechol O-Methyltransferase In Complex With A		6e-06
1jr4_A	221	Catechol O-Methyltransferase Bisubstrate-Inhibitor		2e-05
2zlb_A	223	Crystal Structure Of Apo Form Of Rat Catechol-O- Me		2e-05
3bwm_A	214	Crystal Structure Of Human Catechol O-Methyltransfe		6e-05
3a7e_A	216	Crystal Structure Of Human Comt Complexed With Sam		7e-05
3bwy_A	214	Crystal Structure Of Human 108m Catechol O- Methylt		2e-04

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score =  277 bits (708), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 128/189 (67%), Positives = 160/189 (84%), Gaps = 1/189 (0%)
Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
           + M T+P AGQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+ITAID +RE YE
Sbjct: 50  SYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYE 109
Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
           IGLP I+KAGV+HKINFIES+A+  LD LL+  E+EGS+D+ FVDADK NY  YHERLMK
Sbjct: 110 IGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMK 169
Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 185
           L+KVGGI  YDNTLWGGTVA PE +VPD F   +R+A+++LN+ LA DPR+++ H+ LGD
Sbjct: 170 LVKVGGIVAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGD 228
Query: 186 GITICRRIF 194
           GIT CRR++
Sbjct: 229 GITFCRRLY 237

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score =  239 bits (611), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 110/187 (58%), Positives = 147/187 (78%)
Query: 7   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 66
           +M T+ D GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+
Sbjct: 60  IMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL 119
Query: 67  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 126
           GLP+IKKAGVDHKI+F E  AL VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+ L
Sbjct: 120 GLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDL 179
Query: 127 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 186
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 180 VKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDG 239
Query: 187 ITICRRI 193
           ITICRRI
Sbjct: 240 ITICRRI 246

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 106/191 (55%), Gaps = 13/191 (6%)
Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
           A M  AP+  Q M ML+RL  AKK +E+G FTGYS L  +L +P+DGQ+   D+N    +
Sbjct: 40  ANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTK 99
Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG---SFDYAFVDADKDNYCNYHER 122
              P  ++A  +HKI      AL  L  LL    NEG    FD+ F+DADK NY NY+E 
Sbjct: 100 HAHPYWREAKQEHKIKLRLGPALDTLHSLL----NEGGEHQFDFIFIDADKTNYLNYYEL 155
Query: 123 LMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVA 182
            +KL+   G+   DN  W G V  P +       G +R+ I  LN+ + +D RV +S +A
Sbjct: 156 ALKLVTPKGLIAIDNIFWDGKVIDPNDT-----SGQTRE-IKKLNQVIKNDSRVFVSLLA 209
Query: 183 LGDGITICRRI 193
           + DG+ + + I
Sbjct: 210 IADGMFLVQPI 220

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 104/187 (55%), Gaps = 11/187 (5%)
Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
           A M  +P+  Q + +L+ L  AK+ +EIGVF GYS L  AL +P DGQI A D +     
Sbjct: 52  APMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATA 111
Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
           I     +KAGV  KI+     AL+ L+QL +  +    FD  F+DADK NY  Y+E  + 
Sbjct: 112 IAKKYWQKAGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDADKRNYPRYYEIGLN 170
Query: 126 LLKVGGIAVYDNTLWGGTVAV--PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL 183
           LL+ GG+ V DN LW G V    P+E        +  Q +   NR LA D RV++S + L
Sbjct: 171 LLRRGGLMVIDNVLWHGKVTEVDPQE--------AQTQVLQQFNRDLAQDERVRISVIPL 222
Query: 184 GDGITIC 190
           GDG+T+ 
Sbjct: 223 GDGMTLA 229

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 7/181 (3%)
Query: 13  DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 72
           +  QL+A L RL+ AKK +++G FTGYS L  AL +P DG++   +V+ +  E+G P+ +
Sbjct: 56  EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWR 115
Query: 73  KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 132
           +A  +HKI+     AL  LD+LL   E  G+FD A VDADK+N   Y+ER ++LL+ GGI
Sbjct: 116 QAEAEHKIDLRLKPALETLDELLAAGEA-GTFDVAVVDADKENCSAYYERCLQLLRPGGI 174
Query: 133 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 192
                 LW G V  P +         + + + +LN  +  D RV +S + LGDG+T+  +
Sbjct: 175 LAVLRVLWRGKVLQPPKG------DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 228
Query: 193 I 193
           I
Sbjct: 229 I 229

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 7/183 (3%)
Query: 10  TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP 69
           TAP+  QL+A+L++L  AKK I+IG FTGYS +   L +P+DG +   DV+ ++  +   
Sbjct: 48  TAPEQAQLLALLVKLXQAKKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKE 107
Query: 70  IIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 129
             +KAG+  KI    S A   L +L+ ++     +D  ++DADK N   Y+E  +KLL+ 
Sbjct: 108 YWEKAGLSDKIGLRLSPAKDTLAELI-HAGQAWQYDLIYIDADKANTDLYYEESLKLLRE 166
Query: 130 GGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITI 189
           GG+   DN L  G VA  E Q  ++      Q I   N+ +  D RV    + +GDG+T+
Sbjct: 167 GGLIAVDNVLRRGQVADEENQSENN------QLIRLFNQKVYKDERVDXILIPIGDGLTL 220
Query: 190 CRR 192
            R+
Sbjct: 221 ARK 223

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/198 (35%), Positives = 106/198 (53%), Gaps = 16/198 (8%)
Query: 5   RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
           +A M  +P+ GQ + +L ++  AK+ IEIG FTGYS L  A  +PEDG+I   DV+ E  
Sbjct: 39  QANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWT 98
Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLL----------KYSENEGSFDYAFVDADKD 114
            +     K+ G+++KI      AL  L  L+           ++    S D  F+DADK+
Sbjct: 99  NVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE 158
Query: 115 NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP 174
           NY NY+  ++KLLK GG+ + DN LW G+VA    Q P      S   I   N  + +D 
Sbjct: 159 NYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEP------STVGIRKFNELVYNDS 212
Query: 175 RVQLSHVALGDGITICRR 192
            V +S V + DG+++ R+
Sbjct: 213 LVDVSLVPIADGVSLVRK 230

>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From Klebsiella Pneumoniae Length = 248

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 11  APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI 70
           A + GQ +A+L+RL  AK+ +EIG   GYS +  A  +P DGQ+  ++ +    ++    
Sbjct: 48  AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVAREN 107
Query: 71  IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 130
           ++ AGVD ++   E  AL  L+ L +      +FD  F+DADK N  +Y    ++  + G
Sbjct: 108 LQLAGVDQRVTLREGPALQSLESLGECP----AFDLIFIDADKPNNPHYLRWALRYSRPG 163
Query: 131 GIAVYDNTLWGGTVAVPE 148
            + + DN +  G V  P+
Sbjct: 164 TLIIGDNVVRDGEVVNPQ 181

>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From Bacillus Cereus Length = 223

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 14/169 (8%)
Query: 11  APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI 70
           +P  G+ + +L+++  A+  +EIG   GYS +  A  +   G++  ++ + +  +I    
Sbjct: 43  SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSN 102
Query: 71  IKKAGVDHKINFIESEALSVLDQLLKYSENEG--SFDYAFVDADKDNYCNYHERLMKLLK 128
           I++A ++ ++      AL  L Q+    ENE    FD+ F+DADK N   Y E  +KL +
Sbjct: 103 IERANLNDRVEVRTGLALDSLQQI----ENEKYEPFDFIFIDADKQNNPAYFEWALKLSR 158
Query: 129 VGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR-QAILDLNRSLADDPRV 176
            G + + DN        V E +V D+     R Q I      +A +PRV
Sbjct: 159 PGTVIIGDNV-------VREGEVIDNTSNDPRVQGIRRFYELIAAEPRV 200

>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From Bacillus Halodurans Length = 233

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 21  LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI 80
           LL+     + +EIG   GYS +  A  +PE   I +I+ +   YE     +K  G++ +I
Sbjct: 49  LLKXAAPARILEIGTAIGYSAIRXAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRI 107
Query: 81  NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 140
             +  +AL + ++L  Y      FD  F+DA K  Y  + +     ++ GG+ + DN L+
Sbjct: 108 ELLFGDALQLGEKLELYP----LFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLF 163
Query: 141 GGTVAVPEEQVPDHFRGSSRQAILD-LNRSLADDPRVQLSHVALGDGITIC 190
            G VA   E   +H R       +D  N+ L + P+       +GDGI I 
Sbjct: 164 RGLVA---ETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAIS 211

>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa O-Methyltransferase From Staphylococcus Aureus Length = 232

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 17  LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 76
           L+  L+R  N K  +EIG   GYS    A +I +D  +T I+ N    +     +     
Sbjct: 62  LIKQLIRXNNVKNILEIGTAIGYSSXQFA-SISDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 77  DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 136
           ++++  IE  AL   + +     N+  +D  F+DA K     + E    LLK  G+ + D
Sbjct: 121 ENQVRIIEGNALEQFENV-----NDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITD 175
Query: 137 NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 190
           N L+ G V+        + R   ++ + D N  L   P    + + + DG+ I 
Sbjct: 176 NVLYHGFVSDIGIVRSRNVRQXVKK-VQDYNEWLIKQPGYTTNFLNIDDGLAIS 228

>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A Catechol-Type, Purine-Containing Bisubstrate Inhibitor - Humanized Form Length = 221

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 15  GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 74
           GQ+M  ++R  +    +E+G + GYS +  A  +    ++  +++N +   I   ++  A
Sbjct: 47  GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA 106
Query: 75  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 132
           G+  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L K  LL+ G +
Sbjct: 107 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 165
Query: 133 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 159
            + DN +  GT        PD   + RGSS
Sbjct: 166 LLADNVIVPGT--------PDFLAYVRGSS 187

>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex Length = 221

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 15  GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 74
           GQ+M  ++R  +    +E+G + GYS +  A  +    ++  +++N +   I   ++  A
Sbjct: 47  GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA 106
Query: 75  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 132
           G+  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L K  LL+ G +
Sbjct: 107 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 165
Query: 133 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 159
            + DN +  GT        PD   + RGSS
Sbjct: 166 LLADNVIVPGT--------PDFLAYVRGSS 187

>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O- Methyltransferase Length = 223

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 15  GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 74
           GQ+M  ++R  +    +E+G + GYS +  A  +    ++  +++N +   I   ++  A
Sbjct: 49  GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA 108
Query: 75  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 132
           G+  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L K  LL+ G +
Sbjct: 109 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 167
Query: 133 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 159
            + DN +  GT        PD   + RGSS
Sbjct: 168 LLADNVIVPGT--------PDFLAYVRGSS 189

>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase With Bound Sam And Dnc Length = 214

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 8   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 67
           M      G+++  +++       +E+G + GYS +  A  +    ++  I++N +   I 
Sbjct: 39  MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 68  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-- 125
             ++  AGV  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L +  
Sbjct: 99  QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECG 157
Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 159
           LL+ G + + DN +  G         PD   H RGSS
Sbjct: 158 LLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186

>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And 3,5- Dinitrocatechol Length = 216

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 8   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 67
           M      G+++  +++       +E+G + GYS +  A  +    ++  I++N +   I 
Sbjct: 42  MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 101
Query: 68  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-- 125
             ++  AGV  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L +  
Sbjct: 102 QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECG 160
Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 159
           LL+ G + + DN +  G         PD   H RGSS
Sbjct: 161 LLRKGTVLLADNVICPGA--------PDFLAHVRGSS 189

>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O- Methyltransferase Bound With S-Adenosylmethionine And Inhibitor Dinitrocatechol Length = 214

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 8   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 67
           M      G+++  +++       +E+G + GYS +  A  +    ++  I++N +   I 
Sbjct: 39  MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 68  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-- 125
             ++  AG+  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L +  
Sbjct: 99  QRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECG 157
Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 159
           LL+ G + + DN +  G         PD   H RGSS
Sbjct: 158 LLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	4e-86
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	2e-85
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	1e-79
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	4e-79
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	2e-78
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	6e-78
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	1e-77
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	2e-77
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	6e-77
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	2e-76
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	6e-76
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	6e-73
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	8e-70
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	1e-63
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	6e-05
2b25_A	336	Hypothetical protein; structural genomics, methyl	4e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	4e-04

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score =  252 bits (647), Expect = 4e-86
 Identities = 127/189 (67%), Positives = 160/189 (84%), Gaps = 1/189 (0%)

Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
           + M T+P AGQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+ITAID +RE YE
Sbjct: 50  SYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYE 109

Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
           IGLP I+KAGV+HKINFIES+A+  LD LL+  E+EGS+D+ FVDADK NY  YHERLMK
Sbjct: 110 IGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMK 169

Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 185
           L+KVGGI  YDNTLWGGTVA PE +VPD  +  +R+A+++LN+ LA DPR+++ H+ LGD
Sbjct: 170 LVKVGGIVAYDNTLWGGTVAQPESEVPDFMK-ENREAVIELNKLLAADPRIEIVHLPLGD 228

Query: 186 GITICRRIF 194
           GIT CRR++
Sbjct: 229 GITFCRRLY 237

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score =  251 bits (642), Expect = 2e-85
 Identities = 110/188 (58%), Positives = 147/188 (78%)

Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
            +M T+ D GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE
Sbjct: 59  NIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYE 118

Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
           +GLP+IKKAGVDHKI+F E  AL VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+ 
Sbjct: 119 LGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLID 178

Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 185
           L+KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GD
Sbjct: 179 LVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGD 238

Query: 186 GITICRRI 193
           GITICRRI
Sbjct: 239 GITICRRI 246

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score =  235 bits (602), Expect = 1e-79
 Identities = 67/191 (35%), Positives = 104/191 (54%), Gaps = 7/191 (3%)

Query: 2   LILRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR 61
                 M TAP+  QL+A+L++L+ AKK I+IG FTGYS +   L +P+DG +   DV+ 
Sbjct: 40  SFSTYAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDE 99

Query: 62  ETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE 121
           ++  +     +KAG+  KI    S A   L +L+   +    +D  ++DADK N   Y+E
Sbjct: 100 KSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQ-AWQYDLIYIDADKANTDLYYE 158

Query: 122 RLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV 181
             +KLL+ GG+   DN L  G VA  E Q  ++      Q I   N+ +  D RV +  +
Sbjct: 159 ESLKLLREGGLIAVDNVLRRGQVADEENQSENN------QLIRLFNQKVYKDERVDMILI 212

Query: 182 ALGDGITICRR 192
            +GDG+T+ R+
Sbjct: 213 PIGDGLTLARK 223

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score =  234 bits (600), Expect = 4e-79
 Identities = 71/188 (37%), Positives = 101/188 (53%), Gaps = 7/188 (3%)

Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
           A M  AP+  Q M ML+RL  AKK +E+G FTGYS L  +L +P+DGQ+   D+N    +
Sbjct: 40  ANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTK 99

Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
              P  ++A  +HKI      AL  L  LL     E  FD+ F+DADK NY NY+E  +K
Sbjct: 100 HAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGG-EHQFDFIFIDADKTNYLNYYELALK 158

Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 185
           L+   G+   DN  W G V  P +           + I  LN+ + +D RV +S +A+ D
Sbjct: 159 LVTPKGLIAIDNIFWDGKVIDPNDTSGQ------TREIKKLNQVIKNDSRVFVSLLAIAD 212

Query: 186 GITICRRI 193
           G+ + + I
Sbjct: 213 GMFLVQPI 220

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score =  232 bits (595), Expect = 2e-78
 Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 7/186 (3%)

Query: 7   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 66
           +         L+  L+R+ N K  +EIG   GYS +  A  I +D  +T I+ N    + 
Sbjct: 52  VPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQY 110

Query: 67  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 126
               +     ++++  IE  AL   + +     N+  +D  F+DA K     + E    L
Sbjct: 111 AKQNLATYHFENQVRIIEGNALEQFENV-----NDKVYDMIFIDAAKAQSKKFFEIYTPL 165

Query: 127 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 186
           LK  G+ + DN L+ G V+        + R    + + D N  L   P    + + + DG
Sbjct: 166 LKHQGLVITDNVLYHGFVSDIGIVRSRNVR-QMVKKVQDYNEWLIKQPGYTTNFLNIDDG 224

Query: 187 ITICRR 192
           + I  +
Sbjct: 225 LAISIK 230

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score =  231 bits (592), Expect = 6e-78
 Identities = 75/187 (40%), Positives = 103/187 (55%), Gaps = 7/187 (3%)

Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
           A M  +P+  Q + +L+ L  AK+ +EIGVF GYS L  AL +P DGQI A D +     
Sbjct: 52  APMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATA 111

Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
           I     +KAGV  KI+     AL+ L+QL +  +    FD  F+DADK NY  Y+E  + 
Sbjct: 112 IAKKYWQKAGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDADKRNYPRYYEIGLN 170

Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 185
           LL+ GG+ V DN LW G V   + Q          Q +   NR LA D RV++S + LGD
Sbjct: 171 LLRRGGLMVIDNVLWHGKVTEVDPQEAQT------QVLQQFNRDLAQDERVRISVIPLGD 224

Query: 186 GITICRR 192
           G+T+  +
Sbjct: 225 GMTLALK 231

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score =  231 bits (590), Expect = 1e-77
 Identities = 70/197 (35%), Positives = 104/197 (52%), Gaps = 16/197 (8%)

Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
           A M  +P+ GQ + +L ++  AK+ IEIG FTGYS L  A  +PEDG+I   DV+ E   
Sbjct: 40  ANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTN 99

Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLK----------YSENEGSFDYAFVDADKDN 115
           +     K+ G+++KI      AL  L  L+           ++    S D  F+DADK+N
Sbjct: 100 VARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN 159

Query: 116 YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPR 175
           Y NY+  ++KLLK GG+ + DN LW G+VA    Q P          I   N  + +D  
Sbjct: 160 YPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPST------VGIRKFNELVYNDSL 213

Query: 176 VQLSHVALGDGITICRR 192
           V +S V + DG+++ R+
Sbjct: 214 VDVSLVPIADGVSLVRK 230

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score =  231 bits (590), Expect = 2e-77
 Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 15/191 (7%)

Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
                A + GQ +A+L+RL  AK+ +EIG   GYS +  A  +P DGQ+  ++ +    +
Sbjct: 43  PAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQ 102

Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
           +    ++ AGVD ++   E  AL  L+ L        +FD  F+DADK N  +Y    ++
Sbjct: 103 VARENLQLAGVDQRVTLREGPALQSLESL----GECPAFDLIFIDADKPNNPHYLRWALR 158

Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRV-----QLSH 180
             + G + + DN +  G V  P+            Q +      +  +PR+     Q   
Sbjct: 159 YSRPGTLIIGDNVVRDGEVVNPQSADER------VQGVRQFIEMMGAEPRLTATALQTVG 212

Query: 181 VALGDGITICR 191
               DG T+  
Sbjct: 213 TKGWDGFTLAW 223

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score =  229 bits (585), Expect = 6e-77
 Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 7/188 (3%)

Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
                  +  QL+A L RL+ AKK +++G FTGYS L  AL +P DG++   +V+ +  E
Sbjct: 49  GDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPE 108

Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
           +G P+ ++A  +HKI+     AL  LD+LL  +   G+FD A VDADK+N   Y+ER ++
Sbjct: 109 LGRPLWRQAEAEHKIDLRLKPALETLDELLA-AGEAGTFDVAVVDADKENCSAYYERCLQ 167

Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 185
           LL+ GGI      LW G V  P +           + + +LN  +  D RV +S + LGD
Sbjct: 168 LLRPGGILAVLRVLWRGKVLQPPKGDVAA------ECVRNLNERIRRDVRVYISLLPLGD 221

Query: 186 GITICRRI 193
           G+T+  +I
Sbjct: 222 GLTLAFKI 229

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score =  228 bits (583), Expect = 2e-76
 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 7/186 (3%)

Query: 7   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 66
           +        + +  LL++    + +EIG   GYS +  A  +P +  I +I+ +   YE 
Sbjct: 35  VPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEE 93

Query: 67  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 126
               +K  G++ +I  +  +AL + ++L    E    FD  F+DA K  Y  + +    +
Sbjct: 94  AHKHVKALGLESRIELLFGDALQLGEKL----ELYPLFDVLFIDAAKGQYRRFFDMYSPM 149

Query: 127 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 186
           ++ GG+ + DN L+ G VA  + +   H +      I   N+ L + P+       +GDG
Sbjct: 150 VRPGGLILSDNVLFRGLVAETDIEHKRHKQ--LATKIDTYNQWLLEHPQYDTRIFPVGDG 207

Query: 187 ITICRR 192
           I I  +
Sbjct: 208 IAISIK 213

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score =  226 bits (578), Expect = 6e-76
 Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 13/192 (6%)

Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
                +P  G+ + +L+++  A+  +EIG   GYS +  A  +   G++  ++ + +  +
Sbjct: 38  PAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHAD 97

Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
           I    I++A ++ ++      AL  L Q+    E    FD+ F+DADK N   Y E  +K
Sbjct: 98  IARSNIERANLNDRVEVRTGLALDSLQQIEN--EKYEPFDFIFIDADKQNNPAYFEWALK 155

Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRV-----QLSH 180
           L + G + + DN +  G V       P        Q I      +A +PRV     Q   
Sbjct: 156 LSRPGTVIIGDNVVREGEVIDNTSNDPR------VQGIRRFYELIAAEPRVSATALQTVG 209

Query: 181 VALGDGITICRR 192
               DG  +   
Sbjct: 210 SKGYDGFIMAVV 221

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score =  218 bits (557), Expect = 6e-73
 Identities = 36/189 (19%), Positives = 72/189 (38%), Gaps = 14/189 (7%)

Query: 5   RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
           R +       G+L+ +L R+   +  +  G   G +    A  I    ++  ID +R+  
Sbjct: 35  RNIPIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNV 94

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
           E    ++   G+  ++     + L +          +   D  F+D D  N  +  ER+ 
Sbjct: 95  EHARRMLHDNGLIDRVELQVGDPLGIAA-------GQRDIDILFMDCDVFNGADVLERMN 147

Query: 125 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184
           + L    + +  N L  G+VA   E            A+ + N  L+       + V +G
Sbjct: 148 RCLAKNALLIAVNALRRGSVAESHEDP-------ETAALREFNHHLSRRRDFFTTIVPVG 200

Query: 185 DGITICRRI 193
           +G+ +  R+
Sbjct: 201 NGVLLGYRL 209

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score =  210 bits (537), Expect = 8e-70
 Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 15/191 (7%)

Query: 7   MMGTAPDAGQLMAMLLRLVN---AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRET 63
           +       GQL+  L    N   +   I I    G   L     + ++  +T ID   E 
Sbjct: 34  LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEH 93

Query: 64  YEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER 122
                 + ++AG    ++ F+ S  L V+ +L        S+   F      +     + 
Sbjct: 94  QRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-----ANDSYQLVFGQVSPMDLKALVDA 148

Query: 123 LMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVA 182
              LL+ GG  V  + L  GT+A    +  D       QA  D +  +       ++ + 
Sbjct: 149 AWPLLRRGGALVLADALLDGTIADQTRKDRDT------QAARDADEYIRSIEGAHVARLP 202

Query: 183 LGDGITICRRI 193
           LG G+T+  + 
Sbjct: 203 LGAGLTVVTKA 213

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score =  195 bits (497), Expect = 1e-63
 Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 16/188 (8%)

Query: 5   RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
              M      GQ+M  ++R  +    +E+G + GYS +  A  +    ++  +++N +  
Sbjct: 37  EWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCA 96

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
            I   ++  AG+  K+  +   +  ++ QL K   +  + D  F+D  KD Y      L 
Sbjct: 97  AITQQMLNFAGLQDKVTILNGASQDLIPQLKK-KYDVDTLDMVFLDHWKDRYLPDTLLLE 155

Query: 125 --KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVA 182
              LL+ G + + DN +  GT                   +   +          L ++ 
Sbjct: 156 KCGLLRKGTVLLADNVIVPGTPDFLA-------------YVRGSSSFECTHYSSYLEYMK 202

Query: 183 LGDGITIC 190
           + DG+   
Sbjct: 203 VVDGLEKA 210

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 22/148 (14%)

Query: 7   MMGTAPDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
           M          M  L         + +E+G     +   + +      +   I+ N   +
Sbjct: 42  MERWETP---YMHALAAAASSKGGRVLEVGFGMAIAA--SKVQEAPIDEHWIIECNDGVF 96

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH---- 120
           +       +    HK+  ++     V   L      +G FD    D    +   +H    
Sbjct: 97  QRLRDWAPRQT--HKVIPLKGLWEDVAPTLP-----DGHFDGILYDTYPLSEETWHTHQF 149

Query: 121 ----ERLMKLLKVGGIAVYDNTLWGGTV 144
                   +LLK GG+  Y N    G +
Sbjct: 150 NFIKNHAFRLLKPGGVLTYCNLTSWGEL 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 33/165 (20%)

Query: 46  LTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGS 103
           L++ ED  +   D  ++  ++   I+ K  +DH I      S  L +   LL   E    
Sbjct: 22  LSVFEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--M 78

Query: 104 FDYAFVDADKDNYCNYHERLMKLLKV------GGIAVYD---NTLWGGTVAVPEEQVPDH 154
                 +  + NY    + LM  +K           +Y    + L+       +  V   
Sbjct: 79  VQKFVEEVLRINY----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-- 132

Query: 155 FRGSSRQAILDLNR---SLADDPRVQLSHVALGDG-----ITICR 191
            R    Q  L L +    L     V +    LG G     + +C 
Sbjct: 133 -R---LQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCL 172

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 41.5 bits (97), Expect = 6e-05
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 1   MLILRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN 60
           M + R      P     +AM+L +    + I+ GV +G    + A  +   G++ A +  
Sbjct: 87  MNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKR 146

Query: 61  RETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 111
            E  ++    + K G+  ++     +     D+           D  F+D 
Sbjct: 147 EEFAKLAESNLTKWGLIERVTIKVRDISEGFDE--------KDVDALFLDV 189

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 39.4 bits (91), Expect = 4e-04
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 3/126 (2%)

Query: 12  PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 71
           P    ++  ++ +      +E G  +G   L  +  +   G++ + +V ++ +++     
Sbjct: 91  PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNY 150

Query: 72  KKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLK 128
           K      K++ +E    +V       S           DA   D  N           LK
Sbjct: 151 KHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLK 210

Query: 129 VGGIAV 134
            GG+  
Sbjct: 211 HGGVCA 216

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 21/138 (15%), Positives = 40/138 (28%), Gaps = 15/138 (10%)

Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTI-EIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
           A++ T    G     L R +     +  +       LL    +     Q+  ID + E  
Sbjct: 97  AVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEAL 156

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD------ADKDNYCN 118
           +    +     +  +I     +A  +        +    +D    +       D      
Sbjct: 157 DGATRLAAGHALAGQITLHRQDAWKL--------DTREGYDLLTSNGLNIYEPDDARVTE 208

Query: 119 YHERLMKLLKVGGIAVYD 136
            + R  + LK GG  V  
Sbjct: 209 LYRRFWQALKPGGALVTS 226

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	100.0
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	100.0
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	100.0
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	100.0
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.98
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.98
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.98
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.98
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.97
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.97
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.96
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.96
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.95
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.95
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.83
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	99.8
2o07_A	304	Spermidine synthase; structural genomics, structur	99.76
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.76
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.76
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.75
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.75
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.75
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.75
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.75
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.75
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.73
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.73
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.72
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.72
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.71
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.71
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.71
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.71
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.7
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.7
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.7
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.7
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.7
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.69
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.69
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.69
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.69
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.69
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.69
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.69
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.68
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.68
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.67
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.67
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.67
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.67
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.67
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.67
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.67
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.66
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.66
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.66
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.65
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.65
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.65
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.65
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.65
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.65
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.65
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.65
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.65
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.64
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.64
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.64
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.64
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.64
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.64
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.63
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.63
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.63
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.63
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.63
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.63
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.63
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.63
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.63
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.62
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.62
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.62
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.62
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.62
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.62
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.61
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.61
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.61
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.61
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.6
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.6
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.6
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.6
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.6
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.6
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.6
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.6
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.6
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.59
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.59
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.59
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.59
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.59
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.59
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.58
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.58
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.58
3ocj_A	305	Putative exported protein; structural genomics, PS	99.57
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.57
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.57
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.57
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.57
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.57
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.57
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.57
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.57
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.57
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.56
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.56
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.56
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.56
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.56
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.56
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.56
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.56
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.56
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.55
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.55
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.55
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.55
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.55
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.55
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.55
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.55
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.54
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.54
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.54
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.54
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.54
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.54
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.54
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.53
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.53
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.52
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.52
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.52
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.52
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.52
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.52
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.52
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.52
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.51
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.51
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.51
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.51
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.51
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.51
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.51
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.51
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.51
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.5
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.5
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.5
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.5
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.5
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.5
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.5
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.5
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.49
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.49
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.49
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.49
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.49
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.49
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.49
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.49
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.48
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.48
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.48
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.48
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.48
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.47
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.47
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.47
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.47
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.46
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.46
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.46
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.45
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.45
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.45
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.45
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.45
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.44
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.44
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.44
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.44
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.44
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.43
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.43
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.43
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.42
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.42
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.42
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.42
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.41
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.41
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.4
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.4
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.4
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.4
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.39
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	99.39
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.39
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.39
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.39
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.39
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.38
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.38
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.38
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.37
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.36
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	99.35
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.35
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.35
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.33
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.33
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.31
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.3
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.3
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.3
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.3
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.3
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.29
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.29
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.28
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.28
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.28
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.28
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.26
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.26
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.26
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.25
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.25
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.25
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.24
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.23
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.23
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.23
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.21
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.21
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.19
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.18
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.18
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.17
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.14
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.14
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.14
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.13
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.12
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.12
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.11
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.11
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.1
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.06
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.05
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.02
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.02
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.99
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.97
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.96
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.96
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.95
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.93
3khk_A	544	Type I restriction-modification system methylation	98.89
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.85
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.84
3lkd_A	542	Type I restriction-modification system methyltrans	98.83
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.79
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.77
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.75
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.7
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.68
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.61
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.47
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.29
3ufb_A	530	Type I restriction-modification system methyltran	98.29
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.18
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	98.16
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.06
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.04
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.94
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.91
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.89
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.77
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.66
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.65
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.6
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.54
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.47
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.42
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.39
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.38
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.34
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.22
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.21
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.2
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.18
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.14
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.12
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	97.06
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.05
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	97.03
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.01
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.98
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.96
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	96.91
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.86
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.82
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.81
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.79
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.78
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.78
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.76
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.74
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.72
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.72
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.67
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.67
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.67
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.65
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.62
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.59
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.59
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.59
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.57
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.54
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.53
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.51
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.47
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.46
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.42
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.4
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.36
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.33
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.32
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.28
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.28
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.25
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.23
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.22
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.21
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.19
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.17
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.13
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.1
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	96.07
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.07
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.03
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.02
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.97
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.96
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.95
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.9
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.9
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.88
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.8
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.58
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.53
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	95.24
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.03
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	94.97
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.87
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.72
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.65
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	94.64
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	94.62
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	94.54
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	94.36
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.33
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.28
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	94.23
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	94.19
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	94.12
3me5_A	482	Cytosine-specific methyltransferase; structural ge	93.98
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	93.92
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	93.91
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	93.87
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.65
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	93.55
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.46
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.45
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.34
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.21
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.15
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.08
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	93.07
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	92.91
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	92.9
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	92.79
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	92.77
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	92.53
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	92.22
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.15
1lnq_A	336	MTHK channels, potassium channel related protein;	92.13
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	91.96
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	91.83
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	91.79
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.64
4ezb_A	317	Uncharacterized conserved protein; structural geno	91.43
3t8y_A	164	CHEB, chemotaxis response regulator protein-glutam	91.29
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.14
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	91.04
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	90.88
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	90.51
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	90.42
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	90.33
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	90.17
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	90.05
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	89.82
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	89.81
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.74
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	89.73
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	89.57
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.55
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	89.4
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	89.27
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	89.22
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	89.1
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	88.92
3eul_A	152	Possible nitrate/nitrite response transcriptional	88.84
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	88.82
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	88.68
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	88.62
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	88.41
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	88.15
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	88.14
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	88.08
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	87.99
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	87.73
3eod_A	130	Protein HNR; response regulator, phosphoprotein, t	87.71
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	87.56
3f6c_A	134	Positive transcription regulator EVGA; structural	87.39
4g65_A	461	TRK system potassium uptake protein TRKA; structur	87.28
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	87.06
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	86.99
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	86.69
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	86.67
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	86.67
3hzh_A	157	Chemotaxis response regulator (CHEY-3); phosphatas	86.64
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	86.51
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	86.44
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	86.27
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	86.23
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	86.08
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	85.99
3kht_A	144	Response regulator; PSI-II, 11023K, structural gen	85.95
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	85.92
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	85.73
3to5_A	134	CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p	85.67
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	85.66
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	85.53
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	85.31
4g65_A	461	TRK system potassium uptake protein TRKA; structur	85.26
3kto_A	136	Response regulator receiver protein; PSI-II,struct	85.22
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	85.21
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	84.99
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	84.86
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	84.83
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	84.47
2zay_A	147	Response regulator receiver protein; structural ge	84.42
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	84.21
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	84.03
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	84.02
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	83.99
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	83.85
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	83.83
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	83.74
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	83.56
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	83.47
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	83.4
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	83.38
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	83.37
4e7p_A	150	Response regulator; DNA binding, cytosol, transcri	83.33
2rjn_A	154	Response regulator receiver:metal-dependent phosph	83.24
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	83.21
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	83.14
3rih_A	293	Short chain dehydrogenase or reductase; structural	83.0
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	82.96
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	82.91
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	82.86
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	82.86
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	82.8
3jte_A	143	Response regulator receiver protein; structural ge	82.74
3i42_A	127	Response regulator receiver domain protein (CHEY-	82.66
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	82.65
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	82.62
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	82.6

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=100.00  E-value=2e-33  Score=215.23  Aligned_cols=183  Identities=39%  Similarity=0.645  Sum_probs=162.1

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      .+.+.+++..+++|..++...++++|||+|||+|++++++|..++++++|+++|+++++++.|+++++..++.++++++.
T Consensus        39 ~~~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~  118 (242)
T 3r3h_A           39 LANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRL  118 (242)
T ss_dssp             GGGTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEE
T ss_pred             CCCCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            35788999999999999999999999999999999999999988768999999999999999999999999988999999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHH
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  164 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  164 (194)
                      +|+.+.++.+..+ ...++||+||+|+....+..+++.+.++|+|||+|+++|+.|.|.+.++....     . ....++
T Consensus       119 gda~~~l~~~~~~-~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~-----~-~~~~~~  191 (242)
T 3r3h_A          119 GPALDTLHSLLNE-GGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTS-----G-QTREIK  191 (242)
T ss_dssp             SCHHHHHHHHHHH-HCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCC-----H-HHHHHH
T ss_pred             cCHHHHHHHHhhc-cCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccC-----h-HHHHHH
Confidence            9999887664221 01268999999999888999999999999999999999999999877654321     1 556799


Q ss_pred             HHHHHhhcCCCeEEEeeecCCeeEEEEEcC
Q 029414          165 DLNRSLADDPRVQLSHVALGDGITICRRIF  194 (194)
Q Consensus       165 ~~~~~l~~~~~~~~~~~p~~~G~~i~~~~~  194 (194)
                      +|++.+.++++|+++++|+++|+.+++|++
T Consensus       192 ~~~~~l~~~~~~~~~~lp~~dG~~~~~k~~  221 (242)
T 3r3h_A          192 KLNQVIKNDSRVFVSLLAIADGMFLVQPIA  221 (242)
T ss_dssp             HHHHHHHTCCSEEEEEESSSSCEEEEEEC-
T ss_pred             HHHHHHhhCCCEEEEEEEccCceEEEEEcC
Confidence            999999999999999999999999999975

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=3.5e-33  Score=211.18  Aligned_cols=176  Identities=22%  Similarity=0.335  Sum_probs=157.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCC---eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEE
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAK---KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKIN   81 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~---~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~   81 (194)
                      +...+++..+++|..++...+++   +|||+|||+|++++++|..++++++++++|+++++++.|+++++..++. ++++
T Consensus        33 ~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~  112 (221)
T 3dr5_A           33 GLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVR  112 (221)
T ss_dssp             TCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEE
T ss_pred             CCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEE
Confidence            35567899999999999998888   9999999999999999998876899999999999999999999999987 7999


Q ss_pred             EEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHH
Q 029414           82 FIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQ  161 (194)
Q Consensus        82 ~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~  161 (194)
                      ++.+|+.+.++.+.     .++||+||+|+....+..+++.+.++|+|||+|+++|+.|.|.+.++...     .. ...
T Consensus       113 ~~~gda~~~l~~~~-----~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~-----~~-~~~  181 (221)
T 3dr5_A          113 FLLSRPLDVMSRLA-----NDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRK-----DR-DTQ  181 (221)
T ss_dssp             EECSCHHHHGGGSC-----TTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCC-----CH-HHH
T ss_pred             EEEcCHHHHHHHhc-----CCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCC-----Ch-HHH
Confidence            99999988766531     36899999999988999999999999999999999999999988765422     11 455


Q ss_pred             HHHHHHHHhhcCCCeEEEeeecCCeeEEEEE
Q 029414          162 AILDLNRSLADDPRVQLSHVALGDGITICRR  192 (194)
Q Consensus       162 ~~~~~~~~l~~~~~~~~~~~p~~~G~~i~~~  192 (194)
                      .+++|++++.++++++++++|+++|++++++
T Consensus       182 ~~~~~~~~l~~~~~~~~~~lp~gdGl~~~~~  212 (221)
T 3dr5_A          182 AARDADEYIRSIEGAHVARLPLGAGLTVVTK  212 (221)
T ss_dssp             HHHHHHHHHTTCTTEEEEEESSTTCEEEEEE
T ss_pred             HHHHHHHHHhhCCCeeEEEeeccchHHHHHH
Confidence            7899999999999999999999999999997

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=100.00  E-value=9.1e-33  Score=210.99  Aligned_cols=188  Identities=68%  Similarity=1.141  Sum_probs=164.5

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      ++.+.+++..++++..++...++++|||+|||+|++++++|..++++++++++|+++++++.++++++..++.++++++.
T Consensus        49 ~~~~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~  128 (237)
T 3c3y_A           49 DSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIE  128 (237)
T ss_dssp             TGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred             CCCCCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            45788899999999999999999999999999999999999998768999999999999999999999999877899999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHH
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  164 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  164 (194)
                      +|+.+.++.+..+....++||+||+|+....+..+++.+.++|+|||+|+++|+.|.|.+..+........+. ....++
T Consensus       129 gda~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~-~~~~i~  207 (237)
T 3c3y_A          129 SDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKE-NREAVI  207 (237)
T ss_dssp             SCHHHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHH-HHHHHH
T ss_pred             cCHHHHHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHH-HHHHHH
Confidence            9999887765322101368999999999889999999999999999999999999999887664333333444 567799


Q ss_pred             HHHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414          165 DLNRSLADDPRVQLSHVALGDGITICRRI  193 (194)
Q Consensus       165 ~~~~~l~~~~~~~~~~~p~~~G~~i~~~~  193 (194)
                      +|++.+.++++++++++|+++|+.+++|+
T Consensus       208 ~~~~~l~~~~~~~~~~lp~~dG~~~~~~~  236 (237)
T 3c3y_A          208 ELNKLLAADPRIEIVHLPLGDGITFCRRL  236 (237)
T ss_dssp             HHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHhcCCCeEEEEEEeCCceEEEEEc
Confidence            99999999999999999999999999986

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=100.00  E-value=2.6e-32  Score=209.66  Aligned_cols=188  Identities=59%  Similarity=1.030  Sum_probs=163.1

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      ++.+.+++..++++..++...++++|||+|||+|++++++|..++++++++++|+++++++.+++++...++.++++++.
T Consensus        58 ~~~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~  137 (247)
T 1sui_A           58 WNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE  137 (247)
T ss_dssp             TGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred             CCCCCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEE
Confidence            35788999999999999999899999999999999999999998767999999999999999999999999877899999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCc-ccchHHHH
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHF-RGSSRQAI  163 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~  163 (194)
                      +|+.+.++.+..+....++||+||+|+....+..+++.+.++|+|||+|+++|+.|.|.+.++....+... +. ....+
T Consensus       138 gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~-~~~~i  216 (247)
T 1sui_A          138 GPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRY-YRDFV  216 (247)
T ss_dssp             SCHHHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECTTGGGGGGCCTTSCCCHHHHH-HHHHH
T ss_pred             CCHHHHHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecCCcCCcccCCCccchhhhhhH-HHHHH
Confidence            99998776652110003689999999988889999999999999999999999999998877643322211 33 56679


Q ss_pred             HHHHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414          164 LDLNRSLADDPRVQLSHVALGDGITICRRI  193 (194)
Q Consensus       164 ~~~~~~l~~~~~~~~~~~p~~~G~~i~~~~  193 (194)
                      ++|++.+..+++++++.+|+++|+++++|+
T Consensus       217 ~~~~~~l~~~~~~~~~~lp~~dG~~l~~k~  246 (247)
T 1sui_A          217 LELNKALAVDPRIEICMLPVGDGITICRRI  246 (247)
T ss_dssp             HHHHHHHHTCTTBCCEEECSTTCEEEECBC
T ss_pred             HHHHHHHhhCCCeEEEEEecCCccEEEEEc
Confidence            999999999999999999999999999986

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.98  E-value=8.7e-31  Score=197.98  Aligned_cols=181  Identities=37%  Similarity=0.579  Sum_probs=159.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +.+.+++..++++..++...++++|||+|||+|.++.+++..++++++++++|+++++++.+++++...++.++++++++
T Consensus        44 ~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~  123 (225)
T 3tr6_A           44 YAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLS  123 (225)
T ss_dssp             GGGSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred             CccccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeC
Confidence            56789999999999999998999999999999999999999887678999999999999999999999998878999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHH
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  165 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  165 (194)
                      |+.+.++.+... ...++||+|++++....+..+++.+.++|+|||+|+++|+.|.|.+..+....      +....+++
T Consensus       124 d~~~~~~~~~~~-~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~------~~~~~~~~  196 (225)
T 3tr6_A          124 PAKDTLAELIHA-GQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQS------ENNQLIRL  196 (225)
T ss_dssp             CHHHHHHHHHTT-TCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCC------HHHHHHHH
T ss_pred             CHHHHHHHhhhc-cCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccC------hHHHHHHH
Confidence            998877665211 00168999999998888999999999999999999999999999877654321      14567999


Q ss_pred             HHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414          166 LNRSLADDPRVQLSHVALGDGITICRRI  193 (194)
Q Consensus       166 ~~~~l~~~~~~~~~~~p~~~G~~i~~~~  193 (194)
                      |++.+..+++++++++|+++|+.+++|+
T Consensus       197 ~~~~l~~~~~~~~~~lp~~dG~~~~~k~  224 (225)
T 3tr6_A          197 FNQKVYKDERVDMILIPIGDGLTLARKK  224 (225)
T ss_dssp             HHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHhcCCCeEEEEEEcCCccEEEEEC
Confidence            9999999999999999999999999986

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.98  E-value=1.8e-30  Score=196.14  Aligned_cols=181  Identities=24%  Similarity=0.406  Sum_probs=159.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +.+.+++..++++..++...++++|||+|||+|.++.+++..++++++++++|+++++++.+++++...+++++++++.+
T Consensus        38 ~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~  117 (223)
T 3duw_A           38 PAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTG  117 (223)
T ss_dssp             CSCSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred             CCcccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence            55778899999999999998999999999999999999999987678999999999999999999999998878999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHH
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  165 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  165 (194)
                      |+.+.++.+...  ..++||+||+|+....+..+++.+.++|+|||+++++++.+.|.+.++....     . ....+++
T Consensus       118 d~~~~~~~~~~~--~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~-----~-~~~~~~~  189 (223)
T 3duw_A          118 LALDSLQQIENE--KYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSND-----P-RVQGIRR  189 (223)
T ss_dssp             CHHHHHHHHHHT--TCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCC-----H-HHHHHHH
T ss_pred             CHHHHHHHHHhc--CCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccc-----h-HHHHHHH
Confidence            998877665322  1157999999999888899999999999999999999999999877654321     1 5567999


Q ss_pred             HHHHhhcCCCeEEEeeec-----CCeeEEEEEcC
Q 029414          166 LNRSLADDPRVQLSHVAL-----GDGITICRRIF  194 (194)
Q Consensus       166 ~~~~l~~~~~~~~~~~p~-----~~G~~i~~~~~  194 (194)
                      |++.+..+++++++++|+     ++|+.+++++|
T Consensus       190 ~~~~l~~~~~~~~~~~p~~~~~~~dG~~~~~~~~  223 (223)
T 3duw_A          190 FYELIAAEPRVSATALQTVGSKGYDGFIMAVVKE  223 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEEETTEEEEEEEEEEC-
T ss_pred             HHHHHhhCCCeEEEEEeccCCCCCCeeEEEEEeC
Confidence            999999999999999999     99999999986

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.98  E-value=4.1e-31  Score=201.15  Aligned_cols=179  Identities=24%  Similarity=0.319  Sum_probs=157.9

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      ...+.+..++++..++...++.+|||+|||+|.++.++|...+ +++++++|+++++++.|+++++..++.++++++.+|
T Consensus        52 ~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (232)
T 3ntv_A           52 VPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGN  130 (232)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             CCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence            3456789999999999988999999999999999999999765 889999999999999999999999988799999999


Q ss_pred             hHHHHH-HHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHH
Q 029414           87 ALSVLD-QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  165 (194)
Q Consensus        87 ~~~~~~-~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  165 (194)
                      +.+.++ .+      .++||+|+++.....+..+++.+.++|+|||+|+++|+.|.|.+.++....+...+. ....+++
T Consensus       131 ~~~~~~~~~------~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~-~~~~~~~  203 (232)
T 3ntv_A          131 ALEQFENVN------DKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQ-MVKKVQD  203 (232)
T ss_dssp             GGGCHHHHT------TSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHH-HHHHHHH
T ss_pred             HHHHHHhhc------cCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhH-HHHHHHH
Confidence            988766 54      478999999999889999999999999999999999999999887654312222222 5567999


Q ss_pred             HHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414          166 LNRSLADDPRVQLSHVALGDGITICRRI  193 (194)
Q Consensus       166 ~~~~l~~~~~~~~~~~p~~~G~~i~~~~  193 (194)
                      |++.+.++++++++++|+++|+.|++|+
T Consensus       204 ~~~~l~~~~~~~~~~lp~~dG~~i~~k~  231 (232)
T 3ntv_A          204 YNEWLIKQPGYTTNFLNIDDGLAISIKG  231 (232)
T ss_dssp             HHHHHHTCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHhcCCCeEEEEEEcCCceEEEEEC
Confidence            9999999999999999999999999997

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.98  E-value=1.2e-30  Score=198.57  Aligned_cols=181  Identities=41%  Similarity=0.643  Sum_probs=159.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +.+.+.+..++++..++...++++|||+|||+|+++.+++..++++++++++|++++.++.|++++...++.++++++.+
T Consensus        52 ~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~  131 (232)
T 3cbg_A           52 APMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLG  131 (232)
T ss_dssp             GGGSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred             CccCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence            45688999999999999988999999999999999999999887678999999999999999999999988778999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHH
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  165 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  165 (194)
                      |+.+.++.+... +..++||+||+|.....+..+++.+.++|+|||+|+++|+.|.|.+.++...     .. ....+++
T Consensus       132 d~~~~l~~l~~~-~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~-----~~-~~~~~~~  204 (232)
T 3cbg_A          132 PALATLEQLTQG-KPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQ-----EA-QTQVLQQ  204 (232)
T ss_dssp             CHHHHHHHHHTS-SSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCC-----SH-HHHHHHH
T ss_pred             CHHHHHHHHHhc-CCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccC-----Ch-HHHHHHH
Confidence            998877665321 0016899999999888899999999999999999999999999988765422     11 6677999


Q ss_pred             HHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414          166 LNRSLADDPRVQLSHVALGDGITICRRI  193 (194)
Q Consensus       166 ~~~~l~~~~~~~~~~~p~~~G~~i~~~~  193 (194)
                      |++.+.+++++.++++|+++|+.+++|+
T Consensus       205 ~~~~l~~~~~~~~~~lp~~dG~~~~~~~  232 (232)
T 3cbg_A          205 FNRDLAQDERVRISVIPLGDGMTLALKK  232 (232)
T ss_dssp             HHHHHTTCTTEEEEEECSBTCEEEEEEC
T ss_pred             HHHHHhhCCCeEEEEEEcCCeEEEEEeC
Confidence            9999999999999999999999999985

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.97  E-value=3.9e-30  Score=197.65  Aligned_cols=179  Identities=28%  Similarity=0.497  Sum_probs=158.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +.+.+++..++++..++...++++|||+|||+|.++..+|..++++++|+++|+++++++.|++++...++.++++++.+
T Consensus        43 p~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~  122 (248)
T 3tfw_A           43 PAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREG  122 (248)
T ss_dssp             BSCCCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred             CccccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence            55678899999999999988999999999999999999999987678999999999999999999999998889999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHH
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  165 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  165 (194)
                      |+.+.++.+.    ..++||+|++|+....+..+++.+.++|+|||+|+++|+.+.|.+.++...     .. ....+++
T Consensus       123 d~~~~l~~~~----~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~-----~~-~~~~~~~  192 (248)
T 3tfw_A          123 PALQSLESLG----ECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSA-----DE-RVQGVRQ  192 (248)
T ss_dssp             CHHHHHHTCC----SCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCC-----CH-HHHHHHH
T ss_pred             CHHHHHHhcC----CCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCcccc-----ch-HHHHHHH
Confidence            9988776641    124899999999988889999999999999999999999999988765432     11 6677999


Q ss_pred             HHHHhhcCCCeEEEee-ecC----CeeEEEEEcC
Q 029414          166 LNRSLADDPRVQLSHV-ALG----DGITICRRIF  194 (194)
Q Consensus       166 ~~~~l~~~~~~~~~~~-p~~----~G~~i~~~~~  194 (194)
                      |++.+.++++|+++++ |++    ||+.|+++++
T Consensus       193 ~~~~l~~~~~~~~~~l~~~g~~~~DG~~i~~~~~  226 (248)
T 3tfw_A          193 FIEMMGAEPRLTATALQTVGTKGWDGFTLAWVNA  226 (248)
T ss_dssp             HHHHHHHCTTEEEEEEEECSTTCSEEEEEEEECC
T ss_pred             HHHHHhhCCCEEEEEeecCCCCCCCeeEEEEEeC
Confidence            9999999999999988 666    9999999975

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.97  E-value=9.4e-30  Score=192.79  Aligned_cols=182  Identities=38%  Similarity=0.634  Sum_probs=159.6

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      ++.+.+++..++++..++...++++|||+|||+|.++..++..++++++++++|+++.+++.++++++..++.++++++.
T Consensus        48 ~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~  127 (229)
T 2avd_A           48 QGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL  127 (229)
T ss_dssp             TGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             CCCCccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEE
Confidence            45688999999999999999899999999999999999999987657899999999999999999999999877999999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHH
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  164 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  164 (194)
                      +|+.+.++.+... ...++||+|++|.....+..+++.+.++|+|||+++++|+.|.|.+.++...     .. ....++
T Consensus       128 ~d~~~~~~~~~~~-~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~-----~~-~~~~~~  200 (229)
T 2avd_A          128 KPALETLDELLAA-GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKG-----DV-AAECVR  200 (229)
T ss_dssp             SCHHHHHHHHHHT-TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTT-----CH-HHHHHH
T ss_pred             cCHHHHHHHHHhc-CCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccC-----Ch-HHHHHH
Confidence            9998876665321 0016899999999888889999999999999999999999999987665322     11 667799


Q ss_pred             HHHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414          165 DLNRSLADDPRVQLSHVALGDGITICRRI  193 (194)
Q Consensus       165 ~~~~~l~~~~~~~~~~~p~~~G~~i~~~~  193 (194)
                      +|++.+.++++++++++|+++|+.+++|+
T Consensus       201 ~~~~~l~~~~~~~~~~lp~~dGl~~~~k~  229 (229)
T 2avd_A          201 NLNERIRRDVRVYISLLPLGDGLTLAFKI  229 (229)
T ss_dssp             HHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHhhCCCEEEEEEecCCceEEEEEC
Confidence            99999999999999999999999999985

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.96  E-value=1.5e-28  Score=184.12  Aligned_cols=173  Identities=20%  Similarity=0.285  Sum_probs=147.1

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      ...+++....++..++...++++|||+|||+|.++.+++..++++++++++|+++.+++.+++++...++.++++++.+|
T Consensus        37 ~p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  116 (210)
T 3c3p_A           37 IPIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGD  116 (210)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESC
T ss_pred             CCCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEec
Confidence            45688899999999988888999999999999999999998865789999999999999999999998887789999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHH
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDL  166 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  166 (194)
                      +.+.++.+      .+ ||+|+++.....+..+++.+.++|+|||+++++++.|.|...++  ....     ....+++|
T Consensus       117 ~~~~~~~~------~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~--~~~~-----~~~~~~~~  182 (210)
T 3c3p_A          117 PLGIAAGQ------RD-IDILFMDCDVFNGADVLERMNRCLAKNALLIAVNALRRGSVAES--HEDP-----ETAALREF  182 (210)
T ss_dssp             HHHHHTTC------CS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEESSSSCC-------------------CCCHH
T ss_pred             HHHHhccC------CC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEECccccCcccCc--ccch-----HHHHHHHH
Confidence            98866543      35 99999998888889999999999999999999999998876533  1111     33348999


Q ss_pred             HHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414          167 NRSLADDPRVQLSHVALGDGITICRRI  193 (194)
Q Consensus       167 ~~~l~~~~~~~~~~~p~~~G~~i~~~~  193 (194)
                      ++.+..++++.+..+|+++|+.+++|+
T Consensus       183 ~~~l~~~~~~~~~~~p~~~G~~~~~~~  209 (210)
T 3c3p_A          183 NHHLSRRRDFFTTIVPVGNGVLLGYRL  209 (210)
T ss_dssp             HHHHTTCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHhhCCCeEEEEEecCCceEEEEeC
Confidence            999999999999999999999999986

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.96  E-value=7.2e-28  Score=183.84  Aligned_cols=182  Identities=38%  Similarity=0.586  Sum_probs=156.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +.+.+.+..++++..++...++++|||+|||+|.++..++..++++++++++|+++..++.+++++...++.+++++..+
T Consensus        40 ~~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~  119 (239)
T 2hnk_A           40 ANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLG  119 (239)
T ss_dssp             -CCSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred             cccccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEC
Confidence            45688999999999999988999999999999999999999986578999999999999999999999988767999999


Q ss_pred             chHHHHHHHhhc--------CCCC--CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCc
Q 029414           86 EALSVLDQLLKY--------SENE--GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHF  155 (194)
Q Consensus        86 d~~~~~~~~~~~--------~~~~--~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~  155 (194)
                      |+.+.++.+...        ....  ++||+|+++.....+..+++.+.++|+|||+++++++.|.|.+.++...     
T Consensus       120 d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~-----  194 (239)
T 2hnk_A          120 SALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQ-----  194 (239)
T ss_dssp             CHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCC-----
T ss_pred             CHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCcccc-----
Confidence            998866654210        0011  6799999998888888999999999999999999999999977655322     


Q ss_pred             ccchHHHHHHHHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414          156 RGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  193 (194)
Q Consensus       156 ~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~i~~~~  193 (194)
                      .. ....+++|++.+..++++.++++|+++|+.+++|+
T Consensus       195 ~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~  231 (239)
T 2hnk_A          195 EP-STVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKR  231 (239)
T ss_dssp             CH-HHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             ch-HHHHHHHHHHHHhhCCCeEEEEEEcCCceEeeeeh
Confidence            11 66779999999999999999999999999999986

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.95  E-value=5.6e-27  Score=176.92  Aligned_cols=165  Identities=22%  Similarity=0.371  Sum_probs=141.8

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      .+.+++..++++..++...++++|||+|||+|.+++++|..++++++|+++|+++++++.|+++++..++.++++++.+|
T Consensus        39 ~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  118 (221)
T 3u81_A           39 AMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGA  118 (221)
T ss_dssp             GGGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred             CcccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECC
Confidence            46889999999999999999999999999999999999998766889999999999999999999999988789999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCccccHH---HHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHH
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCN---YHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAI  163 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  163 (194)
                      +.+.++.+... ...++||+||+|+....+..   +++.+ ++|+|||+|+++|+.+++                    .
T Consensus       119 ~~~~l~~~~~~-~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~--------------------~  176 (221)
T 3u81_A          119 SQDLIPQLKKK-YDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPG--------------------T  176 (221)
T ss_dssp             HHHHGGGTTTT-SCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCC--------------------C
T ss_pred             HHHHHHHHHHh-cCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcc--------------------h
Confidence            98876654210 01158999999997666554   45555 999999999999988654                    4


Q ss_pred             HHHHHHhhcCCCeEEEeee-------cCCeeEEEEEc
Q 029414          164 LDLNRSLADDPRVQLSHVA-------LGDGITICRRI  193 (194)
Q Consensus       164 ~~~~~~l~~~~~~~~~~~p-------~~~G~~i~~~~  193 (194)
                      ++|++++.++++|++..+|       +++|+.+++++
T Consensus       177 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~  213 (221)
T 3u81_A          177 PDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  213 (221)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred             HHHHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence            7888899999999999999       79999999886

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.95  E-value=9.1e-27  Score=176.97  Aligned_cols=182  Identities=24%  Similarity=0.378  Sum_probs=141.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      ..+.+.+....++..++...++.+|||+|||+|..+..++..++ +++++++|+++..++.+++++...++.+++++..+
T Consensus        34 ~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~  112 (233)
T 2gpy_A           34 QVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFG  112 (233)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred             CCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            34567889999999999888999999999999999999999986 78999999999999999999999998778999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHH
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  165 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  165 (194)
                      |+.+.++...    ..++||+|+++.....+..+++.+.+.|+|||+++++++.+.|.+.++.. ..+..+. ....+++
T Consensus       113 d~~~~~~~~~----~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~-~~~~~~~-~~~~~~~  186 (233)
T 2gpy_A          113 DALQLGEKLE----LYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNVLFRGLVAETDI-EHKRHKQ-LATKIDT  186 (233)
T ss_dssp             CGGGSHHHHT----TSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEETTTC-------------------------
T ss_pred             CHHHHHHhcc----cCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEcCCcCCccCCccc-cccchhH-HHHHHHH
Confidence            9988655431    12689999999887788899999999999999999999999886644321 1111111 3345788


Q ss_pred             HHHHhhcCCCeEEEeeecCCeeEEEEEcC
Q 029414          166 LNRSLADDPRVQLSHVALGDGITICRRIF  194 (194)
Q Consensus       166 ~~~~l~~~~~~~~~~~p~~~G~~i~~~~~  194 (194)
                      |++.+..++.+.+.++|+++|+.+++|++
T Consensus       187 ~~~~l~~~~~~~~~~~p~~dG~~~~~~~~  215 (233)
T 2gpy_A          187 YNQWLLEHPQYDTRIFPVGDGIAISIKRE  215 (233)
T ss_dssp             --CTTTTCTTEEEEEECSTTCEEEEEEC-
T ss_pred             HHHHHHhCCCeEEEEEEcCCeEEEEEEcC
Confidence            98999999999999999999999999864

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.83  E-value=1.1e-19  Score=134.46  Aligned_cols=152  Identities=13%  Similarity=0.090  Sum_probs=116.6

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC--CCcEEE
Q 029414            5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINF   82 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~v~~   82 (194)
                      .|....++..+++|..  ...++++|||+||  |+||+++|+. + +++|+++|.+++..+.++++++++++  .+++++
T Consensus        11 ~P~~~v~~~~~~~L~~--~l~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~   84 (202)
T 3cvo_A           11 RPELTMPPAEAEALRM--AYEEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNI   84 (202)
T ss_dssp             CCCCCSCHHHHHHHHH--HHHHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEE
T ss_pred             CCCccCCHHHHHHHHH--HhhCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEE
Confidence            4678899999999988  4457899999998  6899999984 3 78999999999999999999999998  779999


Q ss_pred             EecchHHH--------------HHHHh----hcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccc
Q 029414           83 IESEALSV--------------LDQLL----KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV  144 (194)
Q Consensus        83 ~~~d~~~~--------------~~~~~----~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~  144 (194)
                      +.+|+.+.              ++.+.    .. ...++||+||+|+.+..  ..+..++++|+|||+|+++|+.+..+.
T Consensus        85 ~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~-~~~~~fDlIfIDg~k~~--~~~~~~l~~l~~GG~Iv~DNv~~r~~y  161 (202)
T 3cvo_A           85 VWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRT-EGFRHPDVVLVDGRFRV--GCALATAFSITRPVTLLFDDYSQRRWQ  161 (202)
T ss_dssp             EECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGC-TTCCCCSEEEECSSSHH--HHHHHHHHHCSSCEEEEETTGGGCSSG
T ss_pred             EEeCchhhhcccccccchhhhhHHHHhhhhhcc-ccCCCCCEEEEeCCCch--hHHHHHHHhcCCCeEEEEeCCcCCcch
Confidence            99996542              22211    11 11368999999997653  667778899999999999997654432


Q ss_pred             cCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEee
Q 029414          145 AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV  181 (194)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  181 (194)
                          .            .+.+|.+.+...++.....+
T Consensus       162 ----~------------~v~~~~~~~~~~~~~a~f~~  182 (202)
T 3cvo_A          162 ----H------------QVEEFLGAPLMIGRLAAFQV  182 (202)
T ss_dssp             ----G------------GGHHHHCCCEEETTEEEEEE
T ss_pred             ----H------------HHHHHHhHHhhcCceEEEEe
Confidence                1            15777666666665444333

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=99.80  E-value=5.7e-19  Score=137.01  Aligned_cols=160  Identities=12%  Similarity=0.084  Sum_probs=126.0

Q ss_pred             CCCCHHHHHHHHHHHHH----cCCCeEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCc------------------
Q 029414            8 MGTAPDAGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNR------------------   61 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~~~----~~~~v~~iD~~~------------------   61 (194)
                      ..+.......|+.+++.    ..+++|||+|++.|++++++|..++    ++.+++++|...                  
T Consensus        84 tmv~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~  163 (282)
T 2wk1_A           84 TMIGIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMAL  163 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCG
T ss_pred             cccCHHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccccccccccccc
Confidence            34566777788877775    4588999999999999999987763    368899999642                  


Q ss_pred             --------chHHhHHHHHHHcCCC-CcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc-cccHHHHHHHHhcccCCe
Q 029414           62 --------ETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGG  131 (194)
Q Consensus        62 --------~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~-~~~~~~~~~~~~~L~~gG  131 (194)
                              ..++.+++++++.++. ++++++.|++.+.++.+.     .++||+||+|++. ..+..+++.++++|+|||
T Consensus       164 ~~~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~-----~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGG  238 (282)
T 2wk1_A          164 HRRNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAP-----IDTLAVLRMDGDLYESTWDTLTNLYPKVSVGG  238 (282)
T ss_dssp             GGGHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCC-----CCCEEEEEECCCSHHHHHHHHHHHGGGEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCC-----CCCEEEEEEcCCccccHHHHHHHHHhhcCCCE
Confidence                    1467789999999984 799999999999887641     3689999999986 457889999999999999


Q ss_pred             EEEEecccc-cccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecCCeeEEEEE
Q 029414          132 IAVYDNTLW-GGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR  192 (194)
Q Consensus       132 ~lv~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~i~~~  192 (194)
                      +|+++|+.+ +|                ...++++|++.    .++...+.+++.+...-||
T Consensus       239 iIv~DD~~~~~G----------------~~~Av~Ef~~~----~~i~~~i~~~~~~~v~~rk  280 (282)
T 2wk1_A          239 YVIVDDYMMCPP----------------CKDAVDEYRAK----FDIADELITIDRDGVYWQR  280 (282)
T ss_dssp             EEEESSCTTCHH----------------HHHHHHHHHHH----TTCCSCCEECSSSCEEEEC
T ss_pred             EEEEcCCCCCHH----------------HHHHHHHHHHh----cCCceEEEEecCEEEEEEe
Confidence            999999853 22                55556666554    4577778888877776665

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.76  E-value=3.2e-18  Score=134.86  Aligned_cols=148  Identities=14%  Similarity=0.198  Sum_probs=114.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH--cCC-CCcEEEEecchHHHHHHHhhcCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGV-DHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      .++++|||+|||+|..+..+++..+ ..+++++|+++++++.+++++..  .++ .++++++.+|+.+.++..      .
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~------~  166 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------Q  166 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------S
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC------C
Confidence            4678999999999999999998754 68999999999999999999875  333 368999999998876542      4


Q ss_pred             CceeEEEEeCCcc-------ccHHHHHHHHhcccCCeEEEEeccc-ccccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 029414          102 GSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDNTL-WGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD  173 (194)
Q Consensus       102 ~~fD~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (194)
                      ++||+|++|...+       ....+++.+.+.|+|||+++++... |..             .. ....+.++++.+-.+
T Consensus       167 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~-------------~~-~~~~~~~~l~~~f~~  232 (304)
T 2o07_A          167 DAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLH-------------LD-LIKEMRQFCQSLFPV  232 (304)
T ss_dssp             SCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTC-------------HH-HHHHHHHHHHHHCSE
T ss_pred             CCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccc-------------hH-HHHHHHHHHHHhCCC
Confidence            7899999997632       2357899999999999999997632 211             01 445577777777766


Q ss_pred             CCeEEEeeecC----CeeEEEEEc
Q 029414          174 PRVQLSHVALG----DGITICRRI  193 (194)
Q Consensus       174 ~~~~~~~~p~~----~G~~i~~~~  193 (194)
                      ..+....+|.-    +|+.++++.
T Consensus       233 v~~~~~~vP~~~~g~~g~~~as~~  256 (304)
T 2o07_A          233 VAYAYCTIPTYPSGQIGFMLCSKN  256 (304)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEESS
T ss_pred             ceeEEEEeccccCcceEEEEEeCC
Confidence            77777777762    689888763

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.76  E-value=4e-18  Score=129.74  Aligned_cols=116  Identities=21%  Similarity=0.309  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT---IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~---~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      ++...++..++...++.+|||||||+|+++..+|..   +.++++|+++|+++++++.|+      +..++++++++|+.
T Consensus        67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~  140 (236)
T 2bm8_A           67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCS  140 (236)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcch
Confidence            888888888888888899999999999999999987   334789999999999999887      12358999999987


Q ss_pred             HH--HHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHh-cccCCeEEEEecc
Q 029414           89 SV--LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-LLKVGGIAVYDNT  138 (194)
Q Consensus        89 ~~--~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~-~L~~gG~lv~~~~  138 (194)
                      +.  ++.+     ...+||+|++++...++..+++.+.+ .|+|||++++++.
T Consensus       141 ~~~~l~~~-----~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          141 DLTTFEHL-----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             CSGGGGGG-----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             hHHHHHhh-----ccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            64  3322     12379999999887778889999997 9999999999875

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.76  E-value=9.7e-18  Score=125.68  Aligned_cols=172  Identities=18%  Similarity=0.119  Sum_probs=121.8

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC----cEEE
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH----KINF   82 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~----~v~~   82 (194)
                      .....+...+.+..++...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...++++    ++++
T Consensus        10 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~   88 (219)
T 3jwg_A           10 KLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL   88 (219)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEE
T ss_pred             CCcchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEE
Confidence            3445566666777777777889999999999999999998764 5799999999999999999998777654    8999


Q ss_pred             EecchHHHHHHHhhcCCCCCceeEEEEeCCc---c--ccHHHHHHHHhcccCCeEEEEecccccccccCCCC----CCCC
Q 029414           83 IESEALSVLDQLLKYSENEGSFDYAFVDADK---D--NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEE----QVPD  153 (194)
Q Consensus        83 ~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~---~--~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~----~~~~  153 (194)
                      +.+|.......       .++||+|++....   .  ....+++.+.+.|+|||++++......+.......    ....
T Consensus        89 ~~~d~~~~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~  161 (219)
T 3jwg_A           89 FQSSLVYRDKR-------FSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRD  161 (219)
T ss_dssp             EECCSSSCCGG-------GTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGC
T ss_pred             EeCcccccccc-------cCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccC
Confidence            99997432111       3689999987652   2  33578999999999999888754333222111100    0111


Q ss_pred             CcccchHHHHHHHHHHhhcCCCeEEEeeecCCe
Q 029414          154 HFRGSSRQAILDLNRSLADDPRVQLSHVALGDG  186 (194)
Q Consensus       154 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G  186 (194)
                      +........+++|.+.+.+..+|++...+++++
T Consensus       162 ~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~  194 (219)
T 3jwg_A          162 HRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEI  194 (219)
T ss_dssp             CTTSBCHHHHHHHHHHHHHHHTEEEEEEEESCC
T ss_pred             ceeeecHHHHHHHHHHHHHHCCcEEEEEecCCc
Confidence            111113455777878888888899998877654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.75  E-value=2.4e-17  Score=122.69  Aligned_cols=119  Identities=17%  Similarity=0.126  Sum_probs=98.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      ..+.+.....+...+...++.+|||+|||+|..+..++..   +.+|+++|+++++++.|+++++..+++++++++.+|+
T Consensus        37 ~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~  113 (204)
T 3njr_A           37 QITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA  113 (204)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT
T ss_pred             CCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch
Confidence            3455566666666666667789999999999999999986   5799999999999999999999999877899999999


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .+.++.       .++||+|+++... ... +++.+.+.|+|||.+++...
T Consensus       114 ~~~~~~-------~~~~D~v~~~~~~-~~~-~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          114 PAALAD-------LPLPEAVFIGGGG-SQA-LYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             TGGGTT-------SCCCSEEEECSCC-CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred             hhhccc-------CCCCCEEEECCcc-cHH-HHHHHHHhcCCCcEEEEEec
Confidence            774433       3679999998743 344 89999999999999999754

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.75  E-value=2.2e-17  Score=122.61  Aligned_cols=121  Identities=19%  Similarity=0.193  Sum_probs=102.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      +..+....+...+...++.+|||+|||+|..+..++...+ ..+++++|+++++++.+++++...++ ++++++.+|+.+
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~  101 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPE  101 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTT
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhh
Confidence            5566656655555666788999999999999999999875 78999999999999999999999888 489999999866


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      .++.       .++||+|+++........+++.+.+.|+|||.+++....
T Consensus       102 ~~~~-------~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          102 GLDD-------LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             TCTT-------SCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             hhhc-------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence            5433       367999999987668889999999999999999996543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.75  E-value=1.1e-17  Score=125.22  Aligned_cols=169  Identities=15%  Similarity=0.140  Sum_probs=120.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC----cEEEEec
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH----KINFIES   85 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~----~v~~~~~   85 (194)
                      ..+...+.+...+...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...+++.    +++++.+
T Consensus        13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (217)
T 3jwh_A           13 LNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG   91 (217)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEEC
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeC
Confidence            3445566666667777889999999999999999998764 6799999999999999999998777653    7999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCc-----cccHHHHHHHHhcccCCeEEEEecccccccccCC----CCCCCCCcc
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVP----EEQVPDHFR  156 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~----~~~~~~~~~  156 (194)
                      |.... +.      ..++||+|++....     +....+++.+.+.|+|||++++......+.....    ......+..
T Consensus        92 d~~~~-~~------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (217)
T 3jwh_A           92 ALTYQ-DK------RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRF  164 (217)
T ss_dssp             CTTSC-CG------GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCS
T ss_pred             Ccccc-cc------cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhccccccccccccccc
Confidence            97432 11      13689999988652     2346889999999999998887543322111100    000111111


Q ss_pred             cchHHHHHHHHHHhhcCCCeEEEeeecCCe
Q 029414          157 GSSRQAILDLNRSLADDPRVQLSHVALGDG  186 (194)
Q Consensus       157 ~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G  186 (194)
                      ......+++|.+.+.+..+|++...++++.
T Consensus       165 ~~~~~~l~~~~~~~~~~~Gf~v~~~~~g~~  194 (217)
T 3jwh_A          165 EWTRSQFQNWANKITERFAYNVQFQPIGEA  194 (217)
T ss_dssp             CBCHHHHHHHHHHHHHHSSEEEEECCCSCC
T ss_pred             ccCHHHHHHHHHHHHHHcCceEEEEecCCc
Confidence            114456788888888888999999887753

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.75  E-value=1.1e-17  Score=132.20  Aligned_cols=150  Identities=18%  Similarity=0.225  Sum_probs=110.7

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc--CC-CCcEEEEecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ..++++|||||||+|..+..+++..+ ..+++++|+++.+++.|++++...  ++ .++++++.+|+.+.++..      
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------  178 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------  178 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc------
Confidence            35678999999999999999998754 789999999999999999998654  33 468999999998876552      


Q ss_pred             CCceeEEEEeCCcc------cc-HHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 029414          101 EGSFDYAFVDADKD------NY-CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD  173 (194)
Q Consensus       101 ~~~fD~i~id~~~~------~~-~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (194)
                      .++||+|++|...+      .+ ..+++.+.+.|+|||+++++.....    .        ... ....+.++++.+-.+
T Consensus       179 ~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~----~--------~~~-~~~~~~~~l~~vF~~  245 (314)
T 2b2c_A          179 KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVW----L--------HLP-LIAHLVAFNRKIFPA  245 (314)
T ss_dssp             TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTT----T--------CHH-HHHHHHHHHHHHCSE
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcc----c--------CHH-HHHHHHHHHHHHCCc
Confidence            47899999987421      11 6889999999999999999752110    0        000 334466666666555


Q ss_pred             CCeEEEeeec---CC-eeEEEEEc
Q 029414          174 PRVQLSHVAL---GD-GITICRRI  193 (194)
Q Consensus       174 ~~~~~~~~p~---~~-G~~i~~~~  193 (194)
                      ..+....+|.   |+ |+.+++++
T Consensus       246 v~~~~~~iP~~~~g~~g~~~ask~  269 (314)
T 2b2c_A          246 VTYAQSIVSTYPSGSMGYLICAKN  269 (314)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEESS
T ss_pred             ceEEEEEecCcCCCceEEEEEeCC
Confidence            5666777776   34 89988764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.75  E-value=5.1e-17  Score=126.55  Aligned_cols=106  Identities=16%  Similarity=0.219  Sum_probs=91.0

Q ss_pred             HHHHcCCCeEEEEcccccHHH-HHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414           21 LLRLVNAKKTIEIGVFTGYSL-LLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        21 l~~~~~~~~vLeiG~G~G~~~-~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      ++...++.+|||||||+|..+ +.+|+ .+ +++|+++|+++++++.|+++++..++ ++++++++|+.+. +       
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~-~~-ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~-------  185 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSH-VY-GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D-------  185 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHH-TT-CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G-------
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHH-cc-CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C-------
Confidence            455678899999999998765 44554 34 78999999999999999999999998 6999999999774 2       


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                       .++||+|++++..++...+++.+.+.|||||++++.+.
T Consensus       186 -d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          186 -GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             -GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             -CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence             27899999988777888999999999999999999764

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.75  E-value=7.1e-17  Score=118.49  Aligned_cols=125  Identities=10%  Similarity=0.072  Sum_probs=97.6

Q ss_pred             cCCCCHHHHHHHHHHHHH--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            7 MMGTAPDAGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      +.++......++..+...  .++.+|||+|||+|..+..++..  ...+|+++|+++++++.+++++...++ +++++++
T Consensus        23 rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~   99 (189)
T 3p9n_A           23 RPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGL-SGATLRR   99 (189)
T ss_dssp             ---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEE
T ss_pred             ccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEE
Confidence            334444445555555443  57789999999999999988774  256899999999999999999999888 5899999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCc----cccHHHHHHHHh--cccCCeEEEEeccc
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADK----DNYCNYHERLMK--LLKVGGIAVYDNTL  139 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~----~~~~~~~~~~~~--~L~~gG~lv~~~~~  139 (194)
                      +|+.+....+     ..++||+|+++.+.    ......++.+.+  +|+|||++++....
T Consensus       100 ~d~~~~~~~~-----~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          100 GAVAAVVAAG-----TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             SCHHHHHHHC-----CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             ccHHHHHhhc-----cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            9998876543     14789999999763    346778888888  99999999996543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.73  E-value=4.1e-17  Score=118.38  Aligned_cols=121  Identities=18%  Similarity=0.231  Sum_probs=94.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      .......++..+....++.+|||+|||+|..+..++.. + ..+++++|+++.+++.+++++...++.++++++.+|+.+
T Consensus        15 ~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   92 (177)
T 2esr_A           15 SDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER   92 (177)
T ss_dssp             ---CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHH
Confidence            33333444444332446789999999999999999986 3 579999999999999999999998887789999999988


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHH--hcccCCeEEEEecc
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYDNT  138 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~--~~L~~gG~lv~~~~  138 (194)
                      .++..      .++||+|+++...  ......++.+.  +.|+|||++++...
T Consensus        93 ~~~~~------~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~  139 (177)
T 2esr_A           93 AIDCL------TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETD  139 (177)
T ss_dssp             HHHHB------CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             hHHhh------cCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence            66553      4679999998763  34556677776  89999999999654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.73  E-value=9.7e-17  Score=126.93  Aligned_cols=106  Identities=16%  Similarity=0.226  Sum_probs=89.5

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH--cC-C-CCcEEEEecchHHHHHHHhhcCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AG-V-DHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~-~-~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      ..++++|||||||+|..+..+++..+ ..+++++|+++.+++.+++++..  .+ + .++++++.+|+.+.++..     
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----  148 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-----  148 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-----
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc-----
Confidence            45778999999999999999998754 68999999999999999999865  22 2 358999999998876553     


Q ss_pred             CCCceeEEEEeCCccc----------cHHHHHHHHhcccCCeEEEEe
Q 029414          100 NEGSFDYAFVDADKDN----------YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~----------~~~~~~~~~~~L~~gG~lv~~  136 (194)
                       .++||+|++|...+.          ...+++.+.+.|+|||++++.
T Consensus       149 -~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  194 (314)
T 1uir_A          149 -EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (314)
T ss_dssp             -CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             -CCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence             478999999976433          478999999999999999996

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.72  E-value=2.6e-17  Score=119.21  Aligned_cols=120  Identities=18%  Similarity=0.162  Sum_probs=96.0

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      ..+..+.+...+...++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...+++.++ ++.+|..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~   87 (178)
T 3hm2_A           10 KQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRA   87 (178)
T ss_dssp             HHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGG
T ss_pred             HHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhh
Confidence            344444444444555677999999999999999999875 789999999999999999999998887788 888888664


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           91 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ++..      .++||+|++...... ..+++.+.+.|+|||.+++....
T Consensus        88 ~~~~------~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           88 FDDV------PDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             GGGC------CSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             hhcc------CCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEeec
Confidence            4331      278999999876444 67899999999999999997543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.72  E-value=9.6e-17  Score=123.82  Aligned_cols=106  Identities=15%  Similarity=0.180  Sum_probs=89.2

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .++.+|||+|||+|..+..+++.++ ++.+|+++|+++.+++.|++++...+...+++++++|..+. +        .+.
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~-~--------~~~  139 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A--------IEN  139 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC-C--------CCS
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc-c--------ccc
Confidence            3567999999999999999998864 36799999999999999999999988878999999998653 1        367


Q ss_pred             eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ||+|++...     ..+...+++.+.+.|||||++++.+..
T Consensus       140 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          140 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            999998754     234457899999999999999997654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.71  E-value=2.1e-16  Score=123.11  Aligned_cols=147  Identities=12%  Similarity=0.076  Sum_probs=105.7

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc--CC--------CCcEEEEecchHHHHHH
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV--------DHKINFIESEALSVLDQ   93 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~--------~~~v~~~~~d~~~~~~~   93 (194)
                      ..++++|||+|||+|..+..+++. + ..+++++|+++.+++.+++++ ..  ++        .++++++.+|+.+.++.
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~  149 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN  149 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc
Confidence            457789999999999999999987 4 789999999999999999998 44  32        35899999999887654


Q ss_pred             HhhcCCCCCceeEEEEeCCc-----cc--cHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHH
Q 029414           94 LLKYSENEGSFDYAFVDADK-----DN--YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDL  166 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~-----~~--~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  166 (194)
                             .++||+|++|...     ..  ...+++.+.+.|+|||+++++......     ...        ....+.+.
T Consensus       150 -------~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~-----~~~--------~~~~~~~~  209 (281)
T 1mjf_A          150 -------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYL-----FTD--------ELISAYKE  209 (281)
T ss_dssp             -------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTT-----SHH--------HHHHHHHH
T ss_pred             -------cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccc-----CHH--------HHHHHHHH
Confidence                   2689999999752     11  478899999999999999997321100     000        22334444


Q ss_pred             HHHhhcCCCeEEEeeecCC---eeEEEEEc
Q 029414          167 NRSLADDPRVQLSHVALGD---GITICRRI  193 (194)
Q Consensus       167 ~~~l~~~~~~~~~~~p~~~---G~~i~~~~  193 (194)
                      ++.+-.+..+....+|..+   |+.++++.
T Consensus       210 l~~~f~~v~~~~~~vP~~~g~~~~~~as~~  239 (281)
T 1mjf_A          210 MKKVFDRVYYYSFPVIGYASPWAFLVGVKG  239 (281)
T ss_dssp             HHHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred             HHHHCCceEEEEEecCCCCceEEEEEeeCC
Confidence            4444333334455667654   47777764

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.71  E-value=3e-16  Score=117.93  Aligned_cols=105  Identities=21%  Similarity=0.305  Sum_probs=88.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      +..+|||||||+|.++..+|...+ +.+|+++|+++.+++.+++++...+++ |++++.+|+.+.++...    ..++||
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~----~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMI----PDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHS----CTTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHc----CCCChh
Confidence            567999999999999999999886 789999999999999999999998876 79999999998766532    247899


Q ss_pred             EEEEeCC---c--cc------cHHHHHHHHhcccCCeEEEEe
Q 029414          106 YAFVDAD---K--DN------YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       106 ~i~id~~---~--~~------~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .|++...   .  ..      ...+++.+.+.|||||.+++.
T Consensus       108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A          108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence            9998632   1  11      135899999999999999985

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.71  E-value=1.8e-16  Score=115.75  Aligned_cols=102  Identities=13%  Similarity=0.119  Sum_probs=83.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++..   +.+|+++|+++++++.|++++...++ +++++++++..... .+     ..++|
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~-~~-----~~~~f   90 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLD-HY-----VREPI   90 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGG-GT-----CCSCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHH-hh-----ccCCc
Confidence            35789999999999999999986   67999999999999999999999888 58999997765432 22     14689


Q ss_pred             eEEEEeC-C-----------ccccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDA-D-----------KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~-~-----------~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+|+++. .           .......++.+.+.|+|||.+++.
T Consensus        91 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  134 (185)
T 3mti_A           91 RAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM  134 (185)
T ss_dssp             EEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence            9999873 1           133456789999999999999985

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.71  E-value=2e-16  Score=115.43  Aligned_cols=109  Identities=15%  Similarity=0.151  Sum_probs=89.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++.. + ..+++++|+++.+++.+++++...++.++++++++|+.+..+.+...   .++|
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~f  117 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE---KLQF  117 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT---TCCE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhc---CCCC
Confidence            46789999999999999998874 2 57999999999999999999999887678999999998866543211   3689


Q ss_pred             eEEEEeCC--ccccHHHHHHH--HhcccCCeEEEEecc
Q 029414          105 DYAFVDAD--KDNYCNYHERL--MKLLKVGGIAVYDNT  138 (194)
Q Consensus       105 D~i~id~~--~~~~~~~~~~~--~~~L~~gG~lv~~~~  138 (194)
                      |+|+++..  .......++.+  .++|+|||++++...
T Consensus       118 D~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~  155 (187)
T 2fhp_A          118 DLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETD  155 (187)
T ss_dssp             EEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence            99999976  23455666766  788999999999643

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.70  E-value=3.3e-16  Score=115.45  Aligned_cols=108  Identities=11%  Similarity=0.173  Sum_probs=90.2

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+..++..+++.++++++|+++.+++.+++++...++.++++++.+|+.+.....      .++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~   93 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI------DCP   93 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC------CSC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc------cCC
Confidence            34668999999999999999999875467999999999999999999999988669999999986653222      478


Q ss_pred             eeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEec
Q 029414          104 FDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       104 fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ||+|+++...            .....+++.+.+.|+|||.+++..
T Consensus        94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            9999988632            133578999999999999999854

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.70  E-value=3.9e-16  Score=128.88  Aligned_cols=122  Identities=16%  Similarity=0.221  Sum_probs=100.1

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      ......++..++...++.+|||+|||+|..+..+|..++..++|+++|+++.+++.+++++++.++.  +.+.++|+.+.
T Consensus        86 Qd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l  163 (464)
T 3m6w_A           86 QEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRAL  163 (464)
T ss_dssp             CCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHH
T ss_pred             ECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHh
Confidence            3344556666666667889999999999999999998875689999999999999999999999986  89999999886


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCc---------cc----------------cHHHHHHHHhcccCCeEEEEecccc
Q 029414           91 LDQLLKYSENEGSFDYAFVDADK---------DN----------------YCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~~---------~~----------------~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ....      .++||+|++|++.         ++                ...+++.+.++|||||.|++..+..
T Consensus       164 ~~~~------~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          164 AEAF------GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             HHHH------CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             hhhc------cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            5433      4789999999652         11                1678899999999999999976553

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.70  E-value=6.4e-16  Score=117.59  Aligned_cols=105  Identities=15%  Similarity=0.184  Sum_probs=88.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...+ +.+|+++|+++.+++.+++++...+++ +++++++|+.+.....    ...++|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~----~~~~~f  142 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRK----DVRESY  142 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCT----TTTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccc----cccCCc
Confidence            3678999999999999999997655 789999999999999999999998886 6999999997653110    003689


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+|++.. ..+...+++.+.+.|+|||.+++.
T Consensus       143 D~V~~~~-~~~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          143 DIVTARA-VARLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             EEEEEEC-CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cEEEEec-cCCHHHHHHHHHHhcCCCCEEEEE
Confidence            9999987 456788999999999999999985

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.70  E-value=8e-16  Score=119.52  Aligned_cols=145  Identities=16%  Similarity=0.178  Sum_probs=107.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc--CC-CCcEEEEecchHHHHHHHhhcCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      .++++|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...  ++ .++++++.+|+.+.++..      .
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~------~  146 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------E  146 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------C
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------C
Confidence            4688999999999999999998643 689999999999999999998652  33 368999999998876542      4


Q ss_pred             CceeEEEEeCCccc-------cHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcC-
Q 029414          102 GSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD-  173 (194)
Q Consensus       102 ~~fD~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  173 (194)
                      ++||+|++|...+.       ...+++.+.+.|+|||++++.....        ..        ....++...+.+++. 
T Consensus       147 ~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~--------~~--------~~~~~~~~~~~l~~~F  210 (275)
T 1iy9_A          147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP--------WF--------TPELITNVQRDVKEIF  210 (275)
T ss_dssp             SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT--------TT--------CHHHHHHHHHHHHTTC
T ss_pred             CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc--------cc--------cHHHHHHHHHHHHHhC
Confidence            68999999975321       3689999999999999999974210        00        112356666666655 


Q ss_pred             CCeEE--Eeeec----CCeeEEEEE
Q 029414          174 PRVQL--SHVAL----GDGITICRR  192 (194)
Q Consensus       174 ~~~~~--~~~p~----~~G~~i~~~  192 (194)
                      +.+..  ..+|.    .+|+.+++|
T Consensus       211 ~~v~~~~~~vp~~~~g~w~~~~ask  235 (275)
T 1iy9_A          211 PITKLYTANIPTYPSGLWTFTIGSK  235 (275)
T ss_dssp             SEEEEEEECCTTSGGGCEEEEEEES
T ss_pred             CCeEEEEEecCcccCcceEEEEeeC
Confidence            44333  33444    367888875

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.70  E-value=6.5e-17  Score=122.99  Aligned_cols=109  Identities=18%  Similarity=0.189  Sum_probs=89.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||||||+|.++.++++..+  .+++++|+++++++.|+++....+  .+++++.+|+.+....+     ..++|
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~-----~~~~F  129 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL-----PDGHF  129 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS-----CTTCE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccc-----cccCC
Confidence            3567999999999999999988643  589999999999999999987665  47899999998776554     25789


Q ss_pred             eEEEEeCC--------ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          105 DYAFVDAD--------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       105 D~i~id~~--------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      |.|+.|..        ..+...+++++.++|||||++++.+....+
T Consensus       130 D~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~  175 (236)
T 3orh_A          130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG  175 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHH
T ss_pred             ceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCch
Confidence            99999865        234567889999999999999997755444

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.69  E-value=4.6e-16  Score=123.87  Aligned_cols=110  Identities=23%  Similarity=0.402  Sum_probs=90.2

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc--CC-CCcEEEEecchHHHHHHHhhcCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...  ++ .++++++.+|+.+.++..     ..
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~-----~~  192 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----AE  192 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----CT
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc-----cC
Confidence            4678999999999999999998754 789999999999999999998753  33 358999999998876543     13


Q ss_pred             CceeEEEEeCCc----cc---cHHHHHHHHhcccCCeEEEEe-cccc
Q 029414          102 GSFDYAFVDADK----DN---YCNYHERLMKLLKVGGIAVYD-NTLW  140 (194)
Q Consensus       102 ~~fD~i~id~~~----~~---~~~~~~~~~~~L~~gG~lv~~-~~~~  140 (194)
                      ++||+|++|...    ..   ...+++.+.+.|+|||+++++ +..|
T Consensus       193 ~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~  239 (334)
T 1xj5_A          193 GSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW  239 (334)
T ss_dssp             TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             CCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCcc
Confidence            689999998651    11   578999999999999999996 4444

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.69  E-value=4.8e-16  Score=128.16  Aligned_cols=124  Identities=15%  Similarity=0.188  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      +......++..++...++.+|||+|||+|..++.+|..++..++|+++|+++.+++.+++++++.++. ++.+..+|+.+
T Consensus        89 vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~  167 (456)
T 3m4x_A           89 SQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAE  167 (456)
T ss_dssp             ECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHH
T ss_pred             EECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHH
Confidence            33444556666666677889999999999999999988765689999999999999999999999987 79999999987


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCcc-------------------------ccHHHHHHHHhcccCCeEEEEecccc
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADKD-------------------------NYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ....+      .++||+|++|++..                         ....+++.+.++|||||.|++..+..
T Consensus       168 l~~~~------~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          168 LVPHF------SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             HHHHH------TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             hhhhc------cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            65444      47899999997511                         11267889999999999999976653

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.69  E-value=2.7e-16  Score=116.66  Aligned_cols=125  Identities=12%  Similarity=0.087  Sum_probs=94.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecc
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESE   86 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d   86 (194)
                      .+.......++..+....++.+|||+|||+|..+..++...  ..+|+++|+++++++.+++++...++. ++++++.+|
T Consensus        35 p~~~~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d  112 (201)
T 2ift_A           35 PTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQS  112 (201)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSC
T ss_pred             cCHHHHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECC
Confidence            34444444555554443477899999999999999877652  369999999999999999999998874 589999999


Q ss_pred             hHHHHHHHhhcCCCCCc-eeEEEEeCC--ccccHHHHHHH--HhcccCCeEEEEeccc
Q 029414           87 ALSVLDQLLKYSENEGS-FDYAFVDAD--KDNYCNYHERL--MKLLKVGGIAVYDNTL  139 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~-fD~i~id~~--~~~~~~~~~~~--~~~L~~gG~lv~~~~~  139 (194)
                      +.+..+.+     ..++ ||+|+++..  .......++.+  .++|+|||++++....
T Consensus       113 ~~~~~~~~-----~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          113 SLDFLKQP-----QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             HHHHTTSC-----CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             HHHHHHhh-----ccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            97764331     1367 999999976  34456677777  5679999999986543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.69  E-value=5.9e-16  Score=120.18  Aligned_cols=122  Identities=20%  Similarity=0.197  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      ...++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++..+++ +++++.+|+.+....
T Consensus        71 ~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~  149 (274)
T 3ajd_A           71 SSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDY  149 (274)
T ss_dssp             GGGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHH
T ss_pred             HHHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchh
Confidence            3445555565667789999999999999999998763489999999999999999999999986 899999999876543


Q ss_pred             HhhcCCCCCceeEEEEeCCc---------------------cccHHHHHHHHhcccCCeEEEEeccc
Q 029414           94 LLKYSENEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~---------------------~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +...   .++||+|++|.+.                     .....+++.+.+.|||||.+++....
T Consensus       150 ~~~~---~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs  213 (274)
T 3ajd_A          150 LLKN---EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS  213 (274)
T ss_dssp             HHHT---TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             hhhc---cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            2111   3689999999542                     23467899999999999999997654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.69  E-value=4.6e-16  Score=123.08  Aligned_cols=122  Identities=21%  Similarity=0.251  Sum_probs=99.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      .......++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++..+++ +++++++|+.+
T Consensus       102 ~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~  180 (315)
T 1ixk_A          102 IQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLH  180 (315)
T ss_dssp             ECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGG
T ss_pred             EeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhh
Confidence            44455556666666667789999999999999999998765689999999999999999999999986 79999999876


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCcc---------c----------------cHHHHHHHHhcccCCeEEEEeccc
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADKD---------N----------------YCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ... .      .++||+|++|.+..         +                ...+++.+.++|||||.+++....
T Consensus       181 ~~~-~------~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          181 IGE-L------NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             GGG-G------CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             ccc-c------cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            532 2      36899999986411         0                147889999999999999997654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.69  E-value=6.2e-16  Score=121.34  Aligned_cols=107  Identities=17%  Similarity=0.187  Sum_probs=87.4

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH--cCC-CCcEEEEecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGV-DHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ..++++|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++..  .++ .++++++.+|+.+.++..      
T Consensus        88 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  160 (296)
T 1inl_A           88 HPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------  160 (296)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------
Confidence            34678999999999999999998754 68999999999999999999865  233 358999999998765442      


Q ss_pred             CCceeEEEEeCCcc--------ccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .++||+|++|...+        ....+++.+.+.|+|||++++..
T Consensus       161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            46899999987533        34788999999999999999963

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.69  E-value=1.2e-15  Score=109.54  Aligned_cols=118  Identities=14%  Similarity=0.114  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH
Q 029414           14 AGQLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   92 (194)
Q Consensus        14 ~~~~l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~   92 (194)
                      ...++..+.... ++.+|||+|||+|..+..++...+   +++++|+++++++.+++++...++  +++++++|+.+..+
T Consensus        28 ~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~  102 (171)
T 1ws6_A           28 RKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLP  102 (171)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHH
T ss_pred             HHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHH
Confidence            333444433323 778999999999999999998744   599999999999999999998876  79999999988655


Q ss_pred             HHhhcCCCCCceeEEEEeCCc-cccHHHHHHHH--hcccCCeEEEEeccc
Q 029414           93 QLLKYSENEGSFDYAFVDADK-DNYCNYHERLM--KLLKVGGIAVYDNTL  139 (194)
Q Consensus        93 ~~~~~~~~~~~fD~i~id~~~-~~~~~~~~~~~--~~L~~gG~lv~~~~~  139 (194)
                      .....   .++||+|+++... ......++.+.  +.|+|||++++....
T Consensus       103 ~~~~~---~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          103 EAKAQ---GERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             HHHHT---TCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             hhhcc---CCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence            54211   2479999998653 45556677777  999999999996543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.68  E-value=9e-16  Score=111.99  Aligned_cols=120  Identities=21%  Similarity=0.213  Sum_probs=100.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .+.......+...+...++.+|||+|||+|..+..++...   .+++++|+++.+++.+++++...+..+++++..+|..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   92 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP   92 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHH
Confidence            3445566666666666678899999999999999999864   6999999999999999999999888668999999987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +.++.       .++||+|+++........+++.+.+.|+|||.+++...
T Consensus        93 ~~~~~-------~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           93 EALCK-------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             HHHTT-------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             Hhccc-------CCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            74332       25899999988766778999999999999999999653

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.68  E-value=7.1e-16  Score=114.50  Aligned_cols=120  Identities=15%  Similarity=0.102  Sum_probs=91.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      .......++..+....++.+|||+|||+|..++.++...  ..+|+++|+++.+++.+++++...++ ++++++++|+.+
T Consensus        38 ~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~  114 (202)
T 2fpo_A           38 TDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMS  114 (202)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHH
Confidence            333334444444333367899999999999999877653  35999999999999999999999887 489999999987


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHh--cccCCeEEEEecc
Q 029414           90 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMK--LLKVGGIAVYDNT  138 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~--~L~~gG~lv~~~~  138 (194)
                      .++..      .++||+|+++..  .......++.+.+  .|+|||++++...
T Consensus       115 ~~~~~------~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          115 FLAQK------GTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESE  161 (202)
T ss_dssp             HHSSC------CCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             HHhhc------CCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence            65431      468999999976  3345567777755  5999999998643

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.67  E-value=2.8e-16  Score=120.22  Aligned_cols=117  Identities=21%  Similarity=0.262  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      ....+...+...++.+|||+|||+|..+..++...  +.+++++|+++.+++.+++++...++.+++++..+|+.+... 
T Consensus        24 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-  100 (256)
T 1nkv_A           24 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-  100 (256)
T ss_dssp             HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-
Confidence            33334344445567899999999999999999875  469999999999999999999999887799999999866321 


Q ss_pred             HhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414           94 LLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                             .++||+|++...   ..+...+++.+.+.|||||.+++.+..+
T Consensus       101 -------~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~  143 (256)
T 1nkv_A          101 -------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYW  143 (256)
T ss_dssp             -------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred             -------CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcc
Confidence                   368999998655   3467889999999999999999976554

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.67  E-value=1.9e-15  Score=119.85  Aligned_cols=147  Identities=17%  Similarity=0.220  Sum_probs=107.0

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc--CC-CCcEEEEecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ..++++|||+|||+|..+..+++..+ ..+++++|+++++++.+++++...  ++ .++++++.+|+.+.++..      
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  186 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------  186 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------
Confidence            34678999999999999999998654 789999999999999999998652  23 358999999998876543      


Q ss_pred             CCceeEEEEeCCcc-----c--cHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 029414          101 EGSFDYAFVDADKD-----N--YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD  173 (194)
Q Consensus       101 ~~~fD~i~id~~~~-----~--~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (194)
                      .++||+|++|...+     .  ...+++.+.+.|+|||++++......        .        ....+.++.+.+++.
T Consensus       187 ~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~--------~--------~~~~~~~~~~~l~~~  250 (321)
T 2pt6_A          187 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLW--------I--------HVGTIKNMIGYAKKL  250 (321)
T ss_dssp             CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTT--------T--------CHHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcc--------c--------CHHHHHHHHHHHHHH
Confidence            46899999997411     1  27889999999999999999632110        0        112356666677655


Q ss_pred             -CCeEEEe--eec----CCeeEEEEEc
Q 029414          174 -PRVQLSH--VAL----GDGITICRRI  193 (194)
Q Consensus       174 -~~~~~~~--~p~----~~G~~i~~~~  193 (194)
                       +.+....  +|.    .+|+.++++.
T Consensus       251 F~~v~~~~~~vp~~~~g~w~f~~as~~  277 (321)
T 2pt6_A          251 FKKVEYANISIPTYPCGCIGILCCSKT  277 (321)
T ss_dssp             CSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred             CCCeEEEEEEeccccCceEEEEEeeCC
Confidence             4444333  333    2457777653

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.67  E-value=7.9e-16  Score=115.07  Aligned_cols=112  Identities=19%  Similarity=0.281  Sum_probs=93.3

Q ss_pred             HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ....++.+|||+|||+|..+..++...++..+++++|+++.+++.+++++...+++ ++++..+|..+..  +     ..
T Consensus        33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--~-----~~  104 (219)
T 3dh0_A           33 FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIP--L-----PD  104 (219)
T ss_dssp             HTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCS--S-----CS
T ss_pred             hCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCC--C-----CC
Confidence            34556789999999999999999998744789999999999999999999988876 8999999986531  1     14


Q ss_pred             CceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414          102 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus       102 ~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      ++||+|++...   ..+...+++.+.+.|+|||.+++.+....
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  147 (219)
T 3dh0_A          105 NTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE  147 (219)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             CCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence            68999999865   34567899999999999999999765443

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.67  E-value=9.1e-16  Score=120.80  Aligned_cols=120  Identities=13%  Similarity=0.079  Sum_probs=94.9

Q ss_pred             CHHHHHHHHHHHH----HcCCC--eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414           11 APDAGQLMAMLLR----LVNAK--KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus        11 ~~~~~~~l~~l~~----~~~~~--~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      -.+...+...+..    ..+++  +|||||||+|..+.++++.++ +.+++++|+++.+++.+++++.... .++++++.
T Consensus        68 ~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~  145 (317)
T 3gjy_A           68 FEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIPR-APRVKIRV  145 (317)
T ss_dssp             SHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEE
T ss_pred             hHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhccccC-CCceEEEE
Confidence            3445555554443    34555  999999999999999999776 7799999999999999999985432 35899999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCcc-------ccHHHHHHHHhcccCCeEEEEec
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +|+.+++...     ..++||+|++|....       ....+++.+.+.|+|||+++++.
T Consensus       146 ~Da~~~l~~~-----~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          146 DDARMVAESF-----TPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             SCHHHHHHTC-----CTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcHHHHHhhc-----cCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence            9999877653     136899999986421       23789999999999999999864

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.67  E-value=1.8e-16  Score=121.38  Aligned_cols=119  Identities=22%  Similarity=0.257  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      ...++..+....++.+|||+|||+|..+..++...+  ++++++|+++.+++.+++++...+++++++++.+|..+. + 
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-  109 (257)
T 3f4k_A           34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-P-  109 (257)
T ss_dssp             HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-S-
T ss_pred             HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-C-
Confidence            333444333445677999999999999999999865  499999999999999999999999887899999998543 1 


Q ss_pred             HhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414           94 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      +     ..++||+|++...  ..+...+++.+.+.|+|||.+++.+..+.
T Consensus       110 ~-----~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  154 (257)
T 3f4k_A          110 F-----QNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWF  154 (257)
T ss_dssp             S-----CTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred             C-----CCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeecc
Confidence            1     1478999998865  22577889999999999999999876543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.67  E-value=2.9e-16  Score=117.00  Aligned_cols=104  Identities=20%  Similarity=0.311  Sum_probs=89.1

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      +.+|||+|||+|..+..++.. + +.+++++|+++.+++.+++++...++.++++++.+|..+..  +     ..++||+
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~-----~~~~~D~  114 (219)
T 3dlc_A           44 AGTCIDIGSGPGALSIALAKQ-S-DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP--I-----EDNYADL  114 (219)
T ss_dssp             EEEEEEETCTTSHHHHHHHHH-S-EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS--S-----CTTCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC--C-----CcccccE
Confidence            349999999999999999987 3 68999999999999999999999988779999999986631  1     1478999


Q ss_pred             EEEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          107 AFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       107 i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      |++...   ..+...+++.+.+.|+|||.+++.+..
T Consensus       115 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  150 (219)
T 3dlc_A          115 IVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF  150 (219)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEECchHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence            999865   356688999999999999999997644

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.67  E-value=1.6e-16  Score=122.58  Aligned_cols=108  Identities=19%  Similarity=0.237  Sum_probs=92.3

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+..++.. + ..+++++|+++.+++.+++++...+++++++++.+|..+..  +     ..++
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-----~~~~  114 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH-V-TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP--F-----RNEE  114 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT-C-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--C-----CTTC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC--C-----CCCC
Confidence            446789999999999999999987 3 67999999999999999999999998888999999986531  1     1478


Q ss_pred             eeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          104 FDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       104 fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ||+|++...  .-+...+++.+.+.|+|||.+++.+..+
T Consensus       115 fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  153 (267)
T 3kkz_A          115 LDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSW  153 (267)
T ss_dssp             EEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEE
T ss_pred             EEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEeee
Confidence            999998865  2256788999999999999999987654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.66  E-value=6.4e-15  Score=106.72  Aligned_cols=115  Identities=21%  Similarity=0.140  Sum_probs=95.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .........+...+...++.+|||+|||+|..+..++.  + ..+++++|+++.+++.+++++...+++ +++++.+|..
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~   93 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--R-CKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIKGRAE   93 (183)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--T-SSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEESCHH
T ss_pred             cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--c-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEECCcc
Confidence            44455666666666666778999999999999999998  3 789999999999999999999998874 8999999987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +.++        .++||+|+++.. .....+++.+.+.  |||.+++...
T Consensus        94 ~~~~--------~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A           94 DVLD--------KLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             HHGG--------GCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             cccc--------CCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEec
Confidence            7322        268999999887 7778888888887  9999999753

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.66  E-value=1.2e-14  Score=115.79  Aligned_cols=118  Identities=14%  Similarity=0.208  Sum_probs=93.5

Q ss_pred             HHHHHHHHH-HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC-cEEEEecchHHHHH
Q 029414           15 GQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLD   92 (194)
Q Consensus        15 ~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~   92 (194)
                      ..++...+. ..++.+|||+|||+|..++.++..   +.+|+++|+++.+++.+++++..+++.+ +++++++|+.+.++
T Consensus       141 ~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~  217 (332)
T 2igt_A          141 WEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQ  217 (332)
T ss_dssp             HHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHH
Confidence            334555544 235679999999999999999985   4499999999999999999999998875 59999999988765


Q ss_pred             HHhhcCCCCCceeEEEEeCCc-------------cccHHHHHHHHhcccCCeEEEEecc
Q 029414           93 QLLKYSENEGSFDYAFVDADK-------------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        93 ~~~~~~~~~~~fD~i~id~~~-------------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .....   .++||+|++|.+.             ..+..+++.+.++|+|||++++...
T Consensus       218 ~~~~~---~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~  273 (332)
T 2igt_A          218 REERR---GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  273 (332)
T ss_dssp             HHHHH---TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             HHHhc---CCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence            43211   3689999998762             1256788999999999999777543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.65  E-value=7.9e-16  Score=112.47  Aligned_cols=114  Identities=15%  Similarity=0.148  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC-cEEEEecchHHHHH
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLD   92 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~   92 (194)
                      ..+.+...+...++.+|||+|||+|..+..++..   ..+++++|+++.+++.+++++...++++ +++++.+|..+..+
T Consensus        40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~  116 (194)
T 1dus_A           40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK  116 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT
T ss_pred             HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc
Confidence            3334444444457789999999999999999987   5799999999999999999999888763 49999999866322


Q ss_pred             HHhhcCCCCCceeEEEEeCCc----cccHHHHHHHHhcccCCeEEEEecc
Q 029414           93 QLLKYSENEGSFDYAFVDADK----DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        93 ~~~~~~~~~~~fD~i~id~~~----~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                              .++||+|+++...    .....+++.+.+.|+|||.+++...
T Consensus       117 --------~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  158 (194)
T 1dus_A          117 --------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             --------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence                    3689999998752    3456788999999999999999654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.65  E-value=8.5e-16  Score=119.20  Aligned_cols=122  Identities=16%  Similarity=0.151  Sum_probs=100.5

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      ++...+...+.+..+....++.+|||+|||+|..++.+|...+ .++|+++|+++++++.++++++.++++ ++.++.+|
T Consensus       100 ~f~~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d  177 (272)
T 3a27_A          100 IMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILAD  177 (272)
T ss_dssp             SCCCGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESC
T ss_pred             EEECCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECC
Confidence            4455555555555555556778999999999999999999865 679999999999999999999999886 78999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +.+. +.       .++||+|++|.+. ....+++.+.+.|+|||++++....
T Consensus       178 ~~~~-~~-------~~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~~~  221 (272)
T 3a27_A          178 NRDV-EL-------KDVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHETV  221 (272)
T ss_dssp             GGGC-CC-------TTCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             hHHc-Cc-------cCCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            9775 32       3689999999765 6667889999999999999987544

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.65  E-value=5.3e-16  Score=119.38  Aligned_cols=114  Identities=18%  Similarity=0.206  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           15 GQLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        15 ~~~l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      +.+|..++... ++.+|||+|||+|..++.++...+  .+++++|+++.+++.|++++..+++.++++++++|+.+....
T Consensus        37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~  114 (259)
T 3lpm_A           37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL  114 (259)
T ss_dssp             HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh
Confidence            45666666666 688999999999999999998754  499999999999999999999999988899999999876432


Q ss_pred             HhhcCCCCCceeEEEEeCCc-----------------------cccHHHHHHHHhcccCCeEEEE
Q 029414           94 LLKYSENEGSFDYAFVDADK-----------------------DNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~-----------------------~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +     ..++||+|+++.+.                       .....+++.+.++|+|||.+++
T Consensus       115 ~-----~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  174 (259)
T 3lpm_A          115 I-----PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF  174 (259)
T ss_dssp             S-----CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             h-----ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence            2     14789999997542                       1234688999999999999998

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.65  E-value=4.9e-15  Score=114.97  Aligned_cols=118  Identities=19%  Similarity=0.252  Sum_probs=97.2

Q ss_pred             CCCHHHHHHHHHHHHH--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            9 GTAPDAGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      ...++...++..++..  .++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...+++ +++++++|
T Consensus        90 ipr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d  167 (276)
T 2b3t_A           90 IPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSD  167 (276)
T ss_dssp             CCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCS
T ss_pred             ccCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcc
Confidence            4456667777766665  4567999999999999999998876 789999999999999999999998876 79999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCc----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+..+        .++||+|+++.+.                            ..+..+++.+.+.|+|||.+++.
T Consensus       168 ~~~~~~--------~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~  237 (276)
T 2b3t_A          168 WFSALA--------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  237 (276)
T ss_dssp             TTGGGT--------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhhhcc--------cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            876422        3689999998531                            23467788899999999999996

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.65  E-value=6.7e-15  Score=121.02  Aligned_cols=162  Identities=18%  Similarity=0.205  Sum_probs=119.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      +.+.....+++..++...++.+|||+|||+|..+..++...+ +++++++|+++.+++.+++++...++  +++++.+|+
T Consensus       228 ~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~  304 (429)
T 1sqg_A          228 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDG  304 (429)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCT
T ss_pred             eEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCch
Confidence            344555666777777777788999999999999999999886 68999999999999999999999887  478899998


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCCcc---------c----------------cHHHHHHHHhcccCCeEEEEecccccc
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDADKD---------N----------------YCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      .+....+.     .++||+|++|++..         +                ...+++.+.++|||||.+++..+.+..
T Consensus       305 ~~~~~~~~-----~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~  379 (429)
T 1sqg_A          305 RYPSQWCG-----EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP  379 (429)
T ss_dssp             TCTHHHHT-----TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred             hhchhhcc-----cCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence            76543331     36899999986521         1                147789999999999999997755422


Q ss_pred             cccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEE-----------Eeeec---CCeeEEEEEcC
Q 029414          143 TVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL-----------SHVAL---GDGITICRRIF  194 (194)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~p~---~~G~~i~~~~~  194 (194)
                      .      +        -...+..|   +.++++|+.           .++|-   .+|+-+++.+|
T Consensus       380 ~------e--------ne~~v~~~---l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k  428 (429)
T 1sqg_A          380 E------E--------NSLQIKAF---LQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK  428 (429)
T ss_dssp             G------G--------THHHHHHH---HHHCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEEEC
T ss_pred             h------h--------HHHHHHHH---HHhCCCCEEeCCCCCCCCeEEECCCCCCCCceEEEEEEE
Confidence            1      1        11123444   445666654           44563   48999988765

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.65  E-value=4.5e-15  Score=110.03  Aligned_cols=112  Identities=15%  Similarity=0.194  Sum_probs=91.8

Q ss_pred             HHHHHHHH-HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414           16 QLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        16 ~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      .++..+.. ..++.+|||+|||+|..+..++.. + ..+++++|+++.+++.+++++...+.. ++++..+|..+..   
T Consensus        49 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~---  122 (205)
T 3grz_A           49 LAMLGIERAMVKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDISDESMTAAEENAALNGIY-DIALQKTSLLADV---  122 (205)
T ss_dssp             HHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCC-CCEEEESSTTTTC---
T ss_pred             HHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeccccccC---
Confidence            34444433 345789999999999999998874 3 569999999999999999999998876 4999999986531   


Q ss_pred             hhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           95 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                            .++||+|+++........+++.+.+.|+|||.+++.+..
T Consensus       123 ------~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  161 (205)
T 3grz_A          123 ------DGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGID  161 (205)
T ss_dssp             ------CSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred             ------CCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence                  478999999987766778889999999999999996543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.65  E-value=2.3e-15  Score=112.62  Aligned_cols=105  Identities=14%  Similarity=0.278  Sum_probs=87.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .+..+|||+|||+|..+..+|...+ +.+++++|+++.+++.|++++...+++ +++++.+|+.+....+     ..++|
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~-----~~~~~  109 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF-----EPGEV  109 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC-----CTTSC
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhc-----CcCCc
Confidence            3567999999999999999999876 889999999999999999999998875 8999999998743222     13679


Q ss_pred             eEEEEeCCcc-----------ccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |.|++....+           ....+++.+.+.|+|||.+++.
T Consensus       110 d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          110 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             CEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence            9998864311           1467899999999999999985

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.65  E-value=3.9e-15  Score=113.08  Aligned_cols=106  Identities=18%  Similarity=0.221  Sum_probs=84.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH------cCCCCcEEEEecchHHHHHHHhhcC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK------AGVDHKINFIESEALSVLDQLLKYS   98 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~~~~~~~~~~   98 (194)
                      .+..+|||||||+|..+..+|...+ +..++++|+++.+++.|++++..      .+. .|++++.+|+.+.++...   
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~---  119 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFF---  119 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHC---
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhC---
Confidence            4567899999999999999999876 78999999999999999988764      344 489999999987455432   


Q ss_pred             CCCCceeEEEEeCCccc-----------cHHHHHHHHhcccCCeEEEEe
Q 029414           99 ENEGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  136 (194)
                       ..++||.|++....+.           ...+++.+.+.|+|||.+++.
T Consensus       120 -~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          120 -YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             -CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence             1478999998643211           247899999999999999984

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.65  E-value=9.6e-16  Score=117.43  Aligned_cols=104  Identities=19%  Similarity=0.279  Sum_probs=88.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..++.+|...+ +.+|+++|+++.+++.+++++...++. +++++++|+.+.....    ...++||
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~----~~~~~fD  153 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRP-ELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREA----GHREAYA  153 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTST----TTTTCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhccc----ccCCCce
Confidence            467999999999999999999876 889999999999999999999999987 6999999997753210    0136899


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|++... .+...+++.+.++|+|||.+++-
T Consensus       154 ~I~s~a~-~~~~~ll~~~~~~LkpgG~l~~~  183 (249)
T 3g89_A          154 RAVARAV-APLCVLSELLLPFLEVGGAAVAM  183 (249)
T ss_dssp             EEEEESS-CCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEECCc-CCHHHHHHHHHHHcCCCeEEEEE
Confidence            9999764 45678899999999999999874

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.64  E-value=1.4e-14  Score=113.01  Aligned_cols=146  Identities=17%  Similarity=0.217  Sum_probs=106.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--C-CCcEEEEecchHHHHHHHhhcCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      .++++|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...+  + .++++++.+|+.+.++..      .
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~  149 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------T  149 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------C
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC------C
Confidence            4678999999999999999998754 7899999999999999999886542  2 358999999998876553      4


Q ss_pred             CceeEEEEeCCc----c-c--cHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcC-
Q 029414          102 GSFDYAFVDADK----D-N--YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD-  173 (194)
Q Consensus       102 ~~fD~i~id~~~----~-~--~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  173 (194)
                      ++||+|++|...    . .  ...+++.+.+.|+|||++++.......                ....+..+.+.+++. 
T Consensus       150 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~----------------~~~~~~~~~~~l~~~F  213 (283)
T 2i7c_A          150 NTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWI----------------HVGTIKNMIGYAKKLF  213 (283)
T ss_dssp             SCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTT----------------CHHHHHHHHHHHHTTC
T ss_pred             CCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCccc----------------CHHHHHHHHHHHHHHC
Confidence            789999998641    1 1  268999999999999999997432100                112256666666655 


Q ss_pred             CCeEE--Eeeec---C-CeeEEEEEc
Q 029414          174 PRVQL--SHVAL---G-DGITICRRI  193 (194)
Q Consensus       174 ~~~~~--~~~p~---~-~G~~i~~~~  193 (194)
                      +.+..  ..+|.   | +|+.++.+.
T Consensus       214 ~~v~~~~~~vP~y~~g~~g~~~~s~~  239 (283)
T 2i7c_A          214 KKVEYANISIPTYPCGCIGILCCSKT  239 (283)
T ss_dssp             SEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred             CceEEEEEEcCCcCCCcEEEEEEeCC
Confidence            33333  33343   2 378887653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.64  E-value=9e-16  Score=114.20  Aligned_cols=113  Identities=20%  Similarity=0.239  Sum_probs=93.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      +.+.....+...+...++.+|||+|||+|..+..++..   ..+++++|+++++++.+++++...+++ ++++..+|..+
T Consensus        61 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~  136 (210)
T 3lbf_A           61 SQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQ  136 (210)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCccc
Confidence            45666666666666677889999999999999999987   579999999999999999999998877 89999999877


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ....       .++||+|+++.......   +.+.+.|+|||.+++.
T Consensus       137 ~~~~-------~~~~D~i~~~~~~~~~~---~~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          137 GWQA-------RAPFDAIIVTAAPPEIP---TALMTQLDEGGILVLP  173 (210)
T ss_dssp             CCGG-------GCCEEEEEESSBCSSCC---THHHHTEEEEEEEEEE
T ss_pred             CCcc-------CCCccEEEEccchhhhh---HHHHHhcccCcEEEEE
Confidence            4332       37899999987644332   3578999999999995

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.64  E-value=7e-16  Score=118.15  Aligned_cols=117  Identities=21%  Similarity=0.273  Sum_probs=96.7

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      .+.....+...+...++.+|||+|||+|..+..++..+.+.++++++|+++++++.|+++++..++++++++..+|+.+.
T Consensus        78 ~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  157 (255)
T 3mb5_A           78 HPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG  157 (255)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC
T ss_pred             cHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc
Confidence            34445555556666678899999999999999999985448899999999999999999999999886799999999754


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           91 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ++        .++||+|+++..  +...+++.+.+.|+|||.+++..
T Consensus       158 ~~--------~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          158 IE--------EENVDHVILDLP--QPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             CC--------CCSEEEEEECSS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cC--------CCCcCEEEECCC--CHHHHHHHHHHHcCCCCEEEEEE
Confidence            21        367999999754  44567899999999999999863

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.64  E-value=2.4e-15  Score=124.38  Aligned_cols=125  Identities=18%  Similarity=0.238  Sum_probs=99.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      ......+++..++...++.+|||+|||+|..+..++..++..++++++|+++.+++.++++++..+++ ++++..+|+.+
T Consensus       243 ~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~  321 (450)
T 2yxl_A          243 VQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARK  321 (450)
T ss_dssp             ECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTC
T ss_pred             ecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhh
Confidence            44455566666666667789999999999999999998863489999999999999999999999986 79999999865


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCccc-------------------------cHHHHHHHHhcccCCeEEEEecccc
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ....+     ..++||+|++|++...                         ...+++.+.++|||||.+++..+..
T Consensus       322 ~~~~~-----~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          322 APEII-----GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             CSSSS-----CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             cchhh-----ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            42211     1267999999865211                         1567899999999999999876543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.64  E-value=3.2e-15  Score=117.31  Aligned_cols=117  Identities=8%  Similarity=0.063  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHH---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           13 DAGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        13 ~~~~~l~~l~~~---~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      .....+..++..   .++.+|||+|||+|..+..++...+  .+|+++|+++++++.+++++...++++++++..+|..+
T Consensus        56 a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (302)
T 3hem_A           56 AQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE  133 (302)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG
T ss_pred             HHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH
Confidence            344445555553   3567999999999999999998753  69999999999999999999999988899999999866


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEeccccc
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      .          .++||+|++....            .....+++.+.+.|+|||.+++.+....
T Consensus       134 ~----------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          134 F----------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             C----------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             c----------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence            4          3789999987652            2337899999999999999999876543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.64  E-value=8.6e-16  Score=114.14  Aligned_cols=124  Identities=15%  Similarity=0.222  Sum_probs=79.9

Q ss_pred             cCCCCHHHHHHHHHHHHH----cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEE
Q 029414            7 MMGTAPDAGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF   82 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~   82 (194)
                      .+...++...++..+...    .++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...+.  ++++
T Consensus         7 ~~~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~   83 (215)
T 4dzr_A            7 CLIPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGA--VVDW   83 (215)
T ss_dssp             GGSCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC---------------------C
T ss_pred             ccCCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCC--ceEE
Confidence            456667777777777664    5678999999999999999999876 78999999999999999999988776  7899


Q ss_pred             EecchHHHHHHHhhcCCCCCceeEEEEeCCcc-----------------------------ccHHHHHHHHhcccCCeE-
Q 029414           83 IESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------------------NYCNYHERLMKLLKVGGI-  132 (194)
Q Consensus        83 ~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~-----------------------------~~~~~~~~~~~~L~~gG~-  132 (194)
                      +++|+.+.++....   ..++||+|+++.+..                             .+..+++.+.++|+|||. 
T Consensus        84 ~~~d~~~~~~~~~~---~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  160 (215)
T 4dzr_A           84 AAADGIEWLIERAE---RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAG  160 (215)
T ss_dssp             CHHHHHHHHHHHHH---TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEE
T ss_pred             EEcchHhhhhhhhh---ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeE
Confidence            99998875443111   137899999975410                             015677888899999999 


Q ss_pred             EEEe
Q 029414          133 AVYD  136 (194)
Q Consensus       133 lv~~  136 (194)
                      +++.
T Consensus       161 ~~~~  164 (215)
T 4dzr_A          161 VFLE  164 (215)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5553

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.63  E-value=7.4e-16  Score=120.04  Aligned_cols=115  Identities=17%  Similarity=0.252  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414           15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      ..++..+....++.+|||+|||+|..+..++..++.+.+++++|+++.+++.+++++...+.  ++++.++|+.+..  +
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~--~   86 (284)
T 3gu3_A           11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE--L   86 (284)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC--C
T ss_pred             HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcC--c
Confidence            33444444456788999999999999999999887558999999999999999999886653  8999999987631  1


Q ss_pred             hhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           95 LKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                            .++||+|++...   ..+...+++.+.+.|+|||.+++.+..
T Consensus        87 ------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           87 ------NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             ------SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ------CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence                  368999999875   456688999999999999999987665

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.63  E-value=2.6e-14  Score=104.04  Aligned_cols=160  Identities=12%  Similarity=0.006  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHH-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414           13 DAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   91 (194)
Q Consensus        13 ~~~~~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   91 (194)
                      ....+....... .++.+|||+|||+|-.++.++...| ..+++++|+|+.+++.+++++...+...++++  .|..+..
T Consensus        35 ~ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~  111 (200)
T 3fzg_A           35 TLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV  111 (200)
T ss_dssp             GHHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH
T ss_pred             hHHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC
Confidence            344444444443 5688999999999999999988776 77999999999999999999999998767777  4554432


Q ss_pred             HHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHH
Q 029414           92 DQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR  168 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (194)
                      +        .++||+|+.-..   ..+....+..+.+.|+|||++|.-++..-+   ..   .+.-..     ...+.++
T Consensus       112 ~--------~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfptksl~---Gr---~~gm~~-----~Y~~~~~  172 (200)
T 3fzg_A          112 Y--------KGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLS---GK---EKGMEE-----NYQLWFE  172 (200)
T ss_dssp             T--------TSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC--------CTTCCC-----CHHHHHH
T ss_pred             C--------CCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhc---CC---Ccchhh-----hHHHHHH
Confidence            1        478999997654   122333455788999999999987633211   11   111111     1344444


Q ss_pred             HhhcCCCeEEEeeecCCeeEEEEEcC
Q 029414          169 SLADDPRVQLSHVALGDGITICRRIF  194 (194)
Q Consensus       169 ~l~~~~~~~~~~~p~~~G~~i~~~~~  194 (194)
                      ....+..+..-.+-+++-+....+++
T Consensus       173 ~~~~~~~~~~~~~~~~nEl~y~~~~~  198 (200)
T 3fzg_A          173 SFTKGWIKILDSKVIGNELVYITSGF  198 (200)
T ss_dssp             HHTTTTSCEEEEEEETTEEEEEECCC
T ss_pred             HhccCcceeeeeeeeCceEEEEEecc
Confidence            44466777888888888888777664

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.63  E-value=6.5e-15  Score=119.95  Aligned_cols=125  Identities=18%  Similarity=0.229  Sum_probs=100.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC-CCcEEEEe
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV-DHKINFIE   84 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~v~~~~   84 (194)
                      ++++.......++..+   .++++|||+|||+|..++.+|...  ..+|+++|+++.+++.+++++..+++ +++++++.
T Consensus       203 gff~~~~~~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~  277 (396)
T 3c0k_A          203 GYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR  277 (396)
T ss_dssp             SSCGGGHHHHHHHHHH---CTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CcCcCHHHHHHHHHHh---hCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence            4455555555554443   577899999999999999999852  35999999999999999999999998 66899999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEecc
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +|+.+.++.+..+   .++||+|++|++.            ..+..++..+.+.|+|||++++...
T Consensus       278 ~D~~~~~~~~~~~---~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          278 DDVFKLLRTYRDR---GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             SCHHHHHHHHHHT---TCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHhc---CCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            9999887654322   3689999999763            4567888999999999999998653

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.63  E-value=5.3e-15  Score=111.50  Aligned_cols=137  Identities=17%  Similarity=0.179  Sum_probs=100.0

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++.+|||+||| +|..+..++...  +.+++++|+++.+++.+++++...++  +++++.+|+.... .+     ..+
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~-~~-----~~~  122 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIK-GV-----VEG  122 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSST-TT-----CCS
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhh-hc-----ccC
Confidence            4567899999999 999999999874  57999999999999999999999887  7999999963221 11     137


Q ss_pred             ceeEEEEeCCcc----------------------ccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchH
Q 029414          103 SFDYAFVDADKD----------------------NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR  160 (194)
Q Consensus       103 ~fD~i~id~~~~----------------------~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~  160 (194)
                      +||+|+++.+..                      .+..+++.+.+.|+|||.+++.-...                   .
T Consensus       123 ~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------------~  183 (230)
T 3evz_A          123 TFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-------------------E  183 (230)
T ss_dssp             CEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-------------------H
T ss_pred             ceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-------------------H
Confidence            899999985421                      13678999999999999999842110                   0


Q ss_pred             HHHHHHHHHhhcCCCeEEEeeecCCeeEEE
Q 029414          161 QAILDLNRSLADDPRVQLSHVALGDGITIC  190 (194)
Q Consensus       161 ~~~~~~~~~l~~~~~~~~~~~p~~~G~~i~  190 (194)
                      ....++.+.+.+ .++....+....|..+.
T Consensus       184 ~~~~~~~~~l~~-~g~~~~~~~~~~g~~~~  212 (230)
T 3evz_A          184 KLLNVIKERGIK-LGYSVKDIKFKVGTRWR  212 (230)
T ss_dssp             HHHHHHHHHHHH-TTCEEEEEEECCCC-CE
T ss_pred             hHHHHHHHHHHH-cCCceEEEEecCCCeEE
Confidence            113444444443 35677777777665543

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.63  E-value=3.1e-14  Score=115.55  Aligned_cols=125  Identities=10%  Similarity=0.150  Sum_probs=96.3

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC-cEEEEec
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIES   85 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~~~~~   85 (194)
                      ++........++..++  .++++|||+|||+|..++.+|...  ..+|+++|+++.+++.|+++++.+++.+ +++++.+
T Consensus       195 ff~~~~~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~  270 (385)
T 2b78_A          195 IFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVM  270 (385)
T ss_dssp             SCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEES
T ss_pred             cCCcHHHHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC
Confidence            3433344444444332  567899999999999999999852  3589999999999999999999999876 8999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCcc------------ccHHHHHHHHhcccCCeEEEEecc
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKD------------NYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~------------~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      |+.+.++.+..+   ..+||+|++|++..            .+..+++.+.+.|+|||++++...
T Consensus       271 D~~~~l~~~~~~---~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          271 DVFDYFKYARRH---HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             CHHHHHHHHHHT---TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CHHHHHHHHHHh---CCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999877665322   35899999997631            234466777899999999999643

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=6.9e-16  Score=118.92  Aligned_cols=119  Identities=13%  Similarity=0.173  Sum_probs=93.2

Q ss_pred             HHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH---cCCCCcEEEEecchHHHHHH
Q 029414           17 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        17 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~~~~   93 (194)
                      +|..++...++.+|||+|||+|..++.++...+ ..+++++|+++++++.|++++..   +++.++++++++|..+..+.
T Consensus        27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~  105 (260)
T 2ozv_A           27 LLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKA  105 (260)
T ss_dssp             HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHH
T ss_pred             HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhh
Confidence            444444445667999999999999999999876 78999999999999999999988   77777899999999876442


Q ss_pred             HhhcCCCCCceeEEEEeCCc---------------------cccHHHHHHHHhcccCCeEEEEe
Q 029414           94 LLKYSENEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~---------------------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ........++||+|+++.+.                     .....+++.+.++|+|||.+++.
T Consensus       106 ~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  169 (260)
T 2ozv_A          106 RVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI  169 (260)
T ss_dssp             HHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence            11000113689999998541                     12567789999999999999883

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.63  E-value=5.5e-14  Score=107.88  Aligned_cols=110  Identities=20%  Similarity=0.249  Sum_probs=90.1

Q ss_pred             HHHHHHHH-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHh
Q 029414           17 LMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   95 (194)
Q Consensus        17 ~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~   95 (194)
                      ++..+... .++.+|||+|||+|..+..+++..   .+++++|+++.+++.+++++..+++.  +++..+|..+.++   
T Consensus       110 ~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g---~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~---  181 (254)
T 2nxc_A          110 ALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP---  181 (254)
T ss_dssp             HHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG---
T ss_pred             HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCc---
Confidence            34444333 467899999999999999988853   39999999999999999999988865  8999999877422   


Q ss_pred             hcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           96 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                           .++||+|+++........+++.+.+.|+|||.+++....
T Consensus       182 -----~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          182 -----FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             -----GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -----CCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEeec
Confidence                 268999999876666678899999999999999997544

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.63  E-value=2.4e-15  Score=112.43  Aligned_cols=105  Identities=16%  Similarity=0.302  Sum_probs=87.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...+ +.+++++|+++.+++.|++++...+++ +++++.+|+.+. +...    ..++|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~-~~~~----~~~~~  112 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDL-TDYF----EDGEI  112 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCG-GGTS----CTTCC
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCC-CEEEEeCCHHHH-Hhhc----CCCCC
Confidence            3567999999999999999999986 789999999999999999999988874 899999998763 2211    13679


Q ss_pred             eEEEEeCCcc-----------ccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+|+++...+           ....+++.+.+.|+|||.+++.
T Consensus       113 D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          113 DRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             SEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             CEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence            9999986522           2367899999999999999985

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.63  E-value=6.2e-15  Score=114.65  Aligned_cols=105  Identities=15%  Similarity=0.124  Sum_probs=89.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++++|||+|||+|..++.+|...+ . +|+++|+++.+++.+++++..+++.++++++++|+.+...        .++|
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~-~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--------~~~f  193 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGK-A-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIA  193 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTC-C-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCC-C-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--------cCCc
Confidence            3578999999999999999999854 3 8999999999999999999999988779999999977532        3689


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      |+|+++.+ .....+++.+.+.|+|||++++.....
T Consensus       194 D~Vi~~~p-~~~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          194 DRILMGYV-VRTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             EEEEECCC-SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cEEEECCc-hhHHHHHHHHHHHCCCCeEEEEEEeec
Confidence            99999865 344578889999999999999976543

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.62  E-value=2.2e-15  Score=113.32  Aligned_cols=114  Identities=11%  Similarity=0.087  Sum_probs=93.0

Q ss_pred             HHHHHHHHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHh
Q 029414           17 LMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   95 (194)
Q Consensus        17 ~l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~   95 (194)
                      -|..+.... ++.+|+|||||+|+.++.+|...+ ..+|+++|+++.+++.|+++++.+++.+++++..+|..+.++.  
T Consensus         5 RL~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~--   81 (225)
T 3kr9_A            5 RLELVASFVSQGAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE--   81 (225)
T ss_dssp             HHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--
T ss_pred             HHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc--
Confidence            345555554 456999999999999999999765 6799999999999999999999999988899999998764432  


Q ss_pred             hcCCCCCceeEEEEeCC-ccccHHHHHHHHhcccCCeEEEEecc
Q 029414           96 KYSENEGSFDYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                           .++||+|++.+. ......+++.+...|+++|.+|++-.
T Consensus        82 -----~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           82 -----TDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             -----GGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             -----CcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence                 126999987654 33357788999999999999999643

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.62  E-value=2.7e-15  Score=113.93  Aligned_cols=119  Identities=17%  Similarity=0.218  Sum_probs=95.9

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      ++.....+.......++.+|||+|||+|..+..++...   .+++++|+++.+++.+++++...+++ ++++..+|+.+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~   81 (239)
T 1xxl_A            6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL   81 (239)
T ss_dssp             CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC
T ss_pred             cCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccC
Confidence            33444455555566788899999999999999999874   49999999999999999999888876 899999998653


Q ss_pred             HHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414           91 LDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                       + +     ..++||+|++...   ..+...+++.+.+.|+|||.+++.+...
T Consensus        82 -~-~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           82 -P-F-----PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             -C-S-----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             -C-C-----CCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence             1 1     1468999998855   3466788999999999999999966543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.62  E-value=1.1e-14  Score=118.60  Aligned_cols=124  Identities=21%  Similarity=0.302  Sum_probs=98.9

Q ss_pred             cCCCCHHHHHHHHHHHHHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            7 MMGTAPDAGQLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      ++........++..   .. ++++|||+|||+|..++.+|.. + ..+|+++|+++.+++.+++++..+++.++++++.+
T Consensus       200 ~f~~~~~~~~~~~~---~~~~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~  274 (396)
T 2as0_A          200 FFLDQRENRLALEK---WVQPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG  274 (396)
T ss_dssp             CCSTTHHHHHHHGG---GCCTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred             ccCCHHHHHHHHHH---HhhCCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEC
Confidence            44444444444443   33 6789999999999999999986 2 46999999999999999999999988668999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEecc
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      |+.+.++.+..+   .++||+|++|++.            ..+..++..+.++|+|||++++...
T Consensus       275 d~~~~~~~~~~~---~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          275 SAFEEMEKLQKK---GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             CHHHHHHHHHHT---TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             CHHHHHHHHHhh---CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            998876654322   4689999999763            4466788999999999999888643

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.62  E-value=1.6e-14  Score=124.94  Aligned_cols=160  Identities=12%  Similarity=0.145  Sum_probs=113.5

Q ss_pred             HHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc------CCCCcEEEEecchHHHH
Q 029414           18 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA------GVDHKINFIESEALSVL   91 (194)
Q Consensus        18 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~   91 (194)
                      +...+...++.+|||+|||+|..+..+++..++..+|+++|+++.+++.|++++...      +.+ +++++++|+.+..
T Consensus       713 LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~-nVefiqGDa~dLp  791 (950)
T 3htx_A          713 ALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK-SATLYDGSILEFD  791 (950)
T ss_dssp             HHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS-EEEEEESCTTSCC
T ss_pred             HHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC-ceEEEECchHhCC
Confidence            344444557899999999999999999998643579999999999999999987643      333 8999999987642


Q ss_pred             HHHhhcCCCCCceeEEEEeCCccc-----cHHHHHHHHhcccCCeEEEEecccc------ccc----------c-cCCCC
Q 029414           92 DQLLKYSENEGSFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLW------GGT----------V-AVPEE  149 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~------~g~----------~-~~~~~  149 (194)
                      .       ..++||+|++......     ...+++.+.+.|+|| .+++.....      .+.          . .....
T Consensus       792 ~-------~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~f  863 (950)
T 3htx_A          792 S-------RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKF  863 (950)
T ss_dssp             T-------TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSC
T ss_pred             c-------ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccc
Confidence            2       1478999999865322     235788999999999 666644322      111          0 00001


Q ss_pred             CCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecCCe
Q 029414          150 QVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG  186 (194)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G  186 (194)
                      ...++.-......++.|.+.+.+..+|++.+.++|+|
T Consensus       864 Rh~DHrFEWTReEFr~Wae~LAer~GYsVefvGVGDg  900 (950)
T 3htx_A          864 RNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGVGGS  900 (950)
T ss_dssp             SCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEEESSC
T ss_pred             cccCcceeecHHHHHHHHHHHHHhcCcEEEEEccCCC
Confidence            1111111114566888888899999999999999988

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.62  E-value=2.3e-15  Score=115.55  Aligned_cols=107  Identities=13%  Similarity=0.247  Sum_probs=88.8

Q ss_pred             HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      +...++.+|||+|||+|..+..++...   .+++++|+++.+++.+++++...+++ ++++..+|+.+. + +     ..
T Consensus        33 l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l-~-~-----~~  101 (260)
T 1vl5_A           33 AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-F-----TD  101 (260)
T ss_dssp             HTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-S-----CT
T ss_pred             hCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhC-C-C-----CC
Confidence            344577899999999999999999874   49999999999999999999988876 899999998653 1 1     14


Q ss_pred             CceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          102 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       102 ~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ++||+|++...   ..+...+++.+.+.|+|||.+++.+..
T Consensus       102 ~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~  142 (260)
T 1vl5_A          102 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  142 (260)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            68999998855   356678999999999999999996543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.62  E-value=5.1e-15  Score=115.17  Aligned_cols=104  Identities=17%  Similarity=0.201  Sum_probs=88.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...+++++++++.+|..+..+.      ..++||
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~fD  138 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH------LETPVD  138 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG------CSSCEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh------cCCCce
Confidence            3569999999999999999986   5699999999999999999999988867999999999775322      147899


Q ss_pred             EEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +|++...   ..+...+++.+.+.|+|||.+++...
T Consensus       139 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          139 LILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            9999865   34667899999999999999999654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.61  E-value=1.9e-15  Score=116.98  Aligned_cols=107  Identities=26%  Similarity=0.315  Sum_probs=91.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...+.+ ++++..+|..+...       ..++|
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~-------~~~~f  106 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPF-------EDSSF  106 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCS-------CTTCE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCC-------CCCCe
Confidence            4678999999999999999999875 789999999999999999999988876 89999999876321       14789


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      |+|++...   ..+...+++.+.+.|+|||++++.+...
T Consensus       107 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          107 DHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             eEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            99998865   3456789999999999999999976443

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.61  E-value=3.6e-15  Score=115.17  Aligned_cols=119  Identities=16%  Similarity=0.299  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHH---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           13 DAGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        13 ~~~~~l~~l~~~---~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      ....+...++..   .++.+|||+|||+|..+..++...  +.+++++|+++.+++.+++++...++++++++..+|..+
T Consensus        45 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  122 (273)
T 3bus_A           45 ATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD  122 (273)
T ss_dssp             HHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc
Confidence            344455555543   356799999999999999999874  579999999999999999999999888789999999866


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414           90 VLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      . + +     ..++||+|++...   ..+...+++.+.+.|+|||.+++.+...
T Consensus       123 ~-~-~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  169 (273)
T 3bus_A          123 L-P-F-----EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVL  169 (273)
T ss_dssp             C-C-S-----CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             C-C-C-----CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence            3 1 1     1468999998764   3466889999999999999999987654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.61  E-value=3.4e-15  Score=113.22  Aligned_cols=115  Identities=18%  Similarity=0.188  Sum_probs=87.5

Q ss_pred             HHHHHHHHH--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           16 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        16 ~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      .++..+...  .++.+|||+|||+|..+..++...  ..+++++|+++.+++.|+++....+  .+++++++|+.+..+.
T Consensus        48 ~~~~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~  123 (236)
T 1zx0_A           48 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPT  123 (236)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGG
T ss_pred             HHHHHHHhhcCCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcc
Confidence            344444433  456799999999999999997642  3489999999999999999887665  4899999999876433


Q ss_pred             HhhcCCCCCceeEEEEeCC--------ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           94 LLKYSENEGSFDYAFVDAD--------KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~--------~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +     ..++||+|++|..        ......+++.+.++|||||++++.+..
T Consensus       124 ~-----~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          124 L-----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             S-----CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             c-----CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            3     2478999999432        112235689999999999999987654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.61  E-value=7.2e-15  Score=115.15  Aligned_cols=110  Identities=14%  Similarity=0.055  Sum_probs=87.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc-CCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .++.+|||+|||+|..+..++..+++..+++++|+++.+++.+++++... +..++++++++|+.+....- ......++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~~~  113 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLG-ADSVDKQK  113 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGC-TTTTTSSC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccc-cccccCCC
Confidence            36789999999999999999987634889999999999999999999887 44568999999987642110 00000168


Q ss_pred             eeEEEEeCC--ccccHHHHHHHHhcccCCeEEEE
Q 029414          104 FDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       104 fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ||+|++...  .-+...+++.+.+.|+|||.+++
T Consensus       114 fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          114 IDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             eeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            999998865  12778899999999999999988

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=3.4e-15  Score=111.41  Aligned_cols=116  Identities=27%  Similarity=0.322  Sum_probs=93.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      ..+.....+...+...++.+|||+|||+|..+..++...++..+++++|+++.+++.+++++...+.+ ++++..+|..+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~  139 (215)
T 2yxe_A           61 SAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTL  139 (215)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGG
T ss_pred             CcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCccc
Confidence            44556666666666667889999999999999999998743589999999999999999999988876 69999999854


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+.       .++||+|++........   +.+.+.|+|||.+++.
T Consensus       140 ~~~~-------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~lv~~  176 (215)
T 2yxe_A          140 GYEP-------LAPYDRIYTTAAGPKIP---EPLIRQLKDGGKLLMP  176 (215)
T ss_dssp             CCGG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             CCCC-------CCCeeEEEECCchHHHH---HHHHHHcCCCcEEEEE
Confidence            3221       36899999987644432   4788999999999985

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.60  E-value=1.7e-15  Score=114.52  Aligned_cols=106  Identities=13%  Similarity=0.129  Sum_probs=86.3

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+..+|..+.++++|+++|+++++++.++++....   +|+..+.+|........    ...+.
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~----~~~~~  147 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYR----HLVEG  147 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGT----TTCCC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccc----cccce
Confidence            456789999999999999999999877999999999999999998887554   38888888875532111    12468


Q ss_pred             eeEEEEeCC-ccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|+||+|.. ..+...++.++.+.|||||.+++.
T Consensus       148 vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          148 VDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            999999876 344567889999999999999985

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.60  E-value=7.1e-15  Score=110.63  Aligned_cols=120  Identities=21%  Similarity=0.291  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHH--HHcCCCeEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCcchHHhHHHHHHHcCC----CCc
Q 029414           10 TAPDAGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGV----DHK   79 (194)
Q Consensus        10 ~~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~   79 (194)
                      +.+.....+...+  ...++.+|||+|||+|..+..++....    +.++++++|+++++++.+++++...++    .++
T Consensus        62 ~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  141 (227)
T 2pbf_A           62 SAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDN  141 (227)
T ss_dssp             CCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTT
T ss_pred             CChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCC
Confidence            3444554444444  355678999999999999999999864    467999999999999999999998873    348


Q ss_pred             EEEEecchHHHHHHH-hhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           80 INFIESEALSVLDQL-LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        80 v~~~~~d~~~~~~~~-~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +++..+|..+..+.. ..    .++||+|+++...+.   +++.+.+.|+|||.+++.
T Consensus       142 v~~~~~d~~~~~~~~~~~----~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          142 FKIIHKNIYQVNEEEKKE----LGLFDAIHVGASASE---LPEILVDLLAENGKLIIP  192 (227)
T ss_dssp             EEEEECCGGGCCHHHHHH----HCCEEEEEECSBBSS---CCHHHHHHEEEEEEEEEE
T ss_pred             EEEEECChHhcccccCcc----CCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEE
Confidence            999999987743100 00    268999999876544   357788999999999985

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.60  E-value=4.6e-15  Score=110.03  Aligned_cols=100  Identities=14%  Similarity=0.121  Sum_probs=87.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...+++ ++++..+|..+..+        .++||
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~--------~~~~D  134 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPS--------EPPFD  134 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCC--------CSCEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCCc--------cCCcC
Confidence            378999999999999999999876 789999999999999999999998876 59999999866421        36899


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|++.. ......+++.+.+.|+|||.+++.
T Consensus       135 ~i~~~~-~~~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          135 GVISRA-FASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             EEECSC-SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             EEEEec-cCCHHHHHHHHHHhcCCCcEEEEE
Confidence            999765 456778999999999999999996

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.60  E-value=3.7e-15  Score=117.97  Aligned_cols=116  Identities=22%  Similarity=0.350  Sum_probs=93.5

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      .+.....+...+...++.+|||+|||+|..+..+++..+..++|+++|+++++++.+++++...+++ ++++..+|..+.
T Consensus        60 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~  138 (317)
T 1dl5_A           60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYG  138 (317)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhc
Confidence            3455555555555667889999999999999999988653578999999999999999999998886 599999998764


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           91 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+.       .++||+|+++...+...   +.+.+.|+|||++++..
T Consensus       139 ~~~-------~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          139 VPE-------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             CGG-------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEB
T ss_pred             ccc-------CCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEEE
Confidence            332       36899999987654433   56778999999999964

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.60  E-value=2.1e-15  Score=112.09  Aligned_cols=118  Identities=10%  Similarity=0.022  Sum_probs=86.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC-----------C
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-----------V   76 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-----------~   76 (194)
                      -..++...+++..+ ...++.+|||+|||+|..+.++++.   +.+|+++|+|+.+++.|+++.....           .
T Consensus         5 ~~~~~~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~   80 (203)
T 1pjz_A            5 SEVNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYA   80 (203)
T ss_dssp             SSSTHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEE
T ss_pred             ccCCHHHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCccccccccccccc
Confidence            34555555555443 2346789999999999999999986   5699999999999999998764210           1


Q ss_pred             CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEE
Q 029414           77 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        77 ~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ..+++++++|..+....-      .++||+|++...     ......+++.+.+.|||||.+++
T Consensus        81 ~~~v~~~~~d~~~l~~~~------~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l  138 (203)
T 1pjz_A           81 APGIEIWCGDFFALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL  138 (203)
T ss_dssp             CSSSEEEEECCSSSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred             CCccEEEECccccCCccc------CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            247999999987643220      157999997654     12345678999999999998443

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.60  E-value=9.3e-15  Score=121.46  Aligned_cols=123  Identities=14%  Similarity=0.203  Sum_probs=98.8

Q ss_pred             CHHHHHHHHHHHHHc--CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           11 APDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~--~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      ......++..++...  ++.+|||+|||+|..|..+|..++..++|+++|+++.+++.+++++++.++. ++.++++|+.
T Consensus       100 Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~  178 (479)
T 2frx_A          100 QEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGR  178 (479)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCST
T ss_pred             ECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHH
Confidence            334445555566555  7789999999999999999998865689999999999999999999999986 7999999997


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCcc---------c----------------cHHHHHHHHhcccCCeEEEEecccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKD---------N----------------YCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      +.....      .+.||.|++|++..         +                ...+++.+.++|||||.|++..+..
T Consensus       179 ~~~~~~------~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          179 VFGAAV------PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             THHHHS------TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             Hhhhhc------cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence            754322      46899999986521         1                2367888999999999999976643

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.60  E-value=4.6e-15  Score=116.01  Aligned_cols=109  Identities=13%  Similarity=0.199  Sum_probs=91.6

Q ss_pred             HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           23 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ...++.+|||+|||+|..+..++...  +.+++++|+++.+++.+++++...++++++++..+|+.+. + +     ..+
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~  149 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P-C-----EDN  149 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S-S-----CTT
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-C-C-----CCC
Confidence            33567899999999999999999874  4599999999999999999999988877999999998663 1 1     146


Q ss_pred             ceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          103 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       103 ~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      +||+|++...   ..+...+++.+.+.|+|||.+++.+...
T Consensus       150 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  190 (297)
T 2o57_A          150 SYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  190 (297)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            8999998765   3456888999999999999999987654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.60  E-value=2.6e-15  Score=117.55  Aligned_cols=114  Identities=15%  Similarity=0.269  Sum_probs=87.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC-----------------------------
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV-----------------------------   76 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----------------------------   76 (194)
                      ++++|||||||+|..+..++..++ ..+|+++|+++.+++.|++++...+.                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            578999999999999999999986 78999999999999999988765432                             


Q ss_pred             ----------------------------CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc---c------ccHHH
Q 029414           77 ----------------------------DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---D------NYCNY  119 (194)
Q Consensus        77 ----------------------------~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~---~------~~~~~  119 (194)
                                                  +.++++.++|.......+..  ...++||+|++....   .      ....+
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~--~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~  202 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVE--AQTPEYDVVLCLSLTKWVHLNWGDEGLKRM  202 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHT--TCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCcccccc--ccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence                                        25899999998642211110  025789999998752   2      56678


Q ss_pred             HHHHHhcccCCeEEEEecccccc
Q 029414          120 HERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       120 ~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      ++.+.++|+|||++++....|..
T Consensus       203 l~~~~~~LkpGG~lil~~~~~~~  225 (292)
T 3g07_A          203 FRRIYRHLRPGGILVLEPQPWSS  225 (292)
T ss_dssp             HHHHHHHEEEEEEEEEECCCHHH
T ss_pred             HHHHHHHhCCCcEEEEecCCchh
Confidence            99999999999999997665543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.59  E-value=6.5e-15  Score=110.96  Aligned_cols=112  Identities=13%  Similarity=0.124  Sum_probs=92.0

Q ss_pred             HHHHHHHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhh
Q 029414           18 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   96 (194)
Q Consensus        18 l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~   96 (194)
                      |..+.... ++.+|+|||||+|+.++.++...+ ..+|+++|+++..++.|+++++.+++.+++++..+|..+.+..   
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~---   87 (230)
T 3lec_A           12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE---   87 (230)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---
T ss_pred             HHHHHHhCCCCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc---
Confidence            44455544 456999999999999999999754 6799999999999999999999999988899999998875432   


Q ss_pred             cCCCCCceeEEEEeCC-ccccHHHHHHHHhcccCCeEEEEec
Q 029414           97 YSENEGSFDYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                          .++||+|++.+. ..-...+++...+.|+++|.+|++.
T Consensus        88 ----~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp  125 (230)
T 3lec_A           88 ----ADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQP  125 (230)
T ss_dssp             ----GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred             ----ccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEEC
Confidence                237999987654 3446677888889999999999975

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.59  E-value=2.1e-14  Score=112.00  Aligned_cols=118  Identities=19%  Similarity=0.265  Sum_probs=94.4

Q ss_pred             CCCCHHHHHHHHHHHHH---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            8 MGTAPDAGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~---~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      +...++...++..+...   .++.+|||+|||+|..++.++.. + +.+++++|+++++++.|++++...++.+++++++
T Consensus       102 lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~  179 (284)
T 1nv8_A          102 FVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRK  179 (284)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred             eecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEE
Confidence            34455556555555442   35679999999999999999998 5 8899999999999999999999999887799999


Q ss_pred             cchHHHHHHHhhcCCCCCce---eEEEEeCCcc----------------------ccHHHHHHHH-hcccCCeEEEEe
Q 029414           85 SEALSVLDQLLKYSENEGSF---DYAFVDADKD----------------------NYCNYHERLM-KLLKVGGIAVYD  136 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~f---D~i~id~~~~----------------------~~~~~~~~~~-~~L~~gG~lv~~  136 (194)
                      +|..+.++         ++|   |+|+++++..                      +...+++.+. +.|+|||.+++.
T Consensus       180 ~D~~~~~~---------~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          180 GEFLEPFK---------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             SSTTGGGG---------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             Ccchhhcc---------cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence            99977421         357   9999985411                      1126789999 999999999985

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.59  E-value=1.2e-14  Score=112.78  Aligned_cols=113  Identities=21%  Similarity=0.288  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414           15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      ...+...+...++.+|||+|||+|..+..++..+.+.++++++|+++++++.+++++...++.+++++..+|..+.++  
T Consensus       101 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--  178 (277)
T 1o54_A          101 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--  178 (277)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--
T ss_pred             HHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc--
Confidence            334444445556789999999999999999998544789999999999999999999998886689999999876521  


Q ss_pred             hhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           95 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                            .++||+|+++..  +...+++.+.+.|+|||.+++..
T Consensus       179 ------~~~~D~V~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          179 ------EKDVDALFLDVP--DPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             ------CCSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             ------CCccCEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence                  367999999753  44577899999999999999964

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.59  E-value=7.8e-15  Score=112.56  Aligned_cols=118  Identities=9%  Similarity=0.023  Sum_probs=87.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH----------c-----
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK----------A-----   74 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~----------~-----   74 (194)
                      ..+...+++..+....++.+|||+|||+|..+.+||..   +.+|+++|+++.+++.|++....          .     
T Consensus        52 ~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~  128 (252)
T 2gb4_A           52 GHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVF  128 (252)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEE
T ss_pred             CCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhccccccccccccccccccc
Confidence            44445555544433346789999999999999999985   56999999999999999876531          0     


Q ss_pred             -CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414           75 -GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        75 -~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                       ....+++++++|+.+....      ..++||+|+....     ......+++.+.++|||||.+++.
T Consensus       129 ~~~~~~i~~~~~D~~~l~~~------~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          129 KSSSGSISLYCCSIFDLPRA------NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             EETTSSEEEEESCTTTGGGG------CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccCCCceEEEECccccCCcc------cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence             0124799999998774221      1278999997543     234567899999999999999653

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.59  E-value=6.1e-14  Score=113.07  Aligned_cols=153  Identities=16%  Similarity=0.188  Sum_probs=105.9

Q ss_pred             CCCeEEEEccc------ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhc
Q 029414           26 NAKKTIEIGVF------TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY   97 (194)
Q Consensus        26 ~~~~vLeiG~G------~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~   97 (194)
                      ++.+|||||||      +|..++.+++.+.++++|+++|+++.+..          ..++++++++|+.+.  ...+...
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~----------~~~rI~fv~GDa~dlpf~~~l~~~  285 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV----------DELRIRTIQGDQNDAEFLDRIARR  285 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG----------CBTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh----------cCCCcEEEEecccccchhhhhhcc
Confidence            67899999999      77777777766434899999999998731          135899999998763  2222111


Q ss_pred             CCCCCceeEEEEeCCc--cccHHHHHHHHhcccCCeEEEEeccccccc--ccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 029414           98 SENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTLWGGT--VAVPEEQVPDHFRGSSRQAILDLNRSLADD  173 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (194)
                         .++||+|++++..  .+....|+.+++.|||||++++.|....-.  ..... ......++ ....++++.+.+...
T Consensus       286 ---d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~-~~~~~~~t-ii~~lk~l~D~l~~~  360 (419)
T 3sso_A          286 ---YGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQA-DPQECSGT-SLGLLKSLIDAIQHQ  360 (419)
T ss_dssp             ---HCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCS-STTCCTTS-HHHHHHHHHHHHTGG
T ss_pred             ---cCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCc-cCCcchhH-HHHHHHHHHHHhccc
Confidence               2789999998763  456788999999999999999998873211  11110 01123344 777788887776632


Q ss_pred             ---------CCe---EEEeeecCCeeEEEEEc
Q 029414          174 ---------PRV---QLSHVALGDGITICRRI  193 (194)
Q Consensus       174 ---------~~~---~~~~~p~~~G~~i~~~~  193 (194)
                               |.+   ++.-+.+-+++.+..|.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~h~y~~i~~~~kg  392 (419)
T 3sso_A          361 ELPSDPNRSPGYVDRNIVGLHVYHNVAFVEKG  392 (419)
T ss_dssp             GSCCCTTCCCCHHHHHEEEEEEETTEEEEEES
T ss_pred             ccCCCcCCCCCccccceeEEEecCcEEEEEec
Confidence                     222   25667788888888875

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.59  E-value=6.7e-16  Score=117.32  Aligned_cols=113  Identities=15%  Similarity=0.149  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      ...++..+....++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++...++.++++++++|+.+..+ 
T Consensus        66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-  141 (241)
T 3gdh_A           66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS-  141 (241)
T ss_dssp             HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG-
T ss_pred             HHHHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc-
Confidence            3444445555557899999999999999999986   479999999999999999999999986689999999987642 


Q ss_pred             HhhcCCCCCceeEEEEeCCcc---ccHHHHHHHHhcccCCeEEEEec
Q 029414           94 LLKYSENEGSFDYAFVDADKD---NYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~~---~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                             .++||+|+++....   .....+..+.+.|+|||++++..
T Consensus       142 -------~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          142 -------FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             -------GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             -------cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence                   37899999987622   22224556778999999987754

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.58  E-value=1.5e-14  Score=118.38  Aligned_cols=124  Identities=14%  Similarity=0.145  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhH-------HHHHHHcCCC-CcEEEE
Q 029414           12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG-------LPIIKKAGVD-HKINFI   83 (194)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a-------~~~~~~~~~~-~~v~~~   83 (194)
                      +.....+...+...++.+|||+|||+|..++.+|...+ ..+|+++|+++.+++.|       ++++...++. .+++++
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i  306 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  306 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence            33333333444455778999999999999999999765 56899999999999988       8888888853 589999


Q ss_pred             ecchHHH---HHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414           84 ESEALSV---LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        84 ~~d~~~~---~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      ++|....   +...      .++||+|++...  .++....++.+.+.|+|||.|++.+...+.
T Consensus       307 ~gD~~~~~~~~~~~------~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~p~  364 (433)
T 1u2z_A          307 LKKSFVDNNRVAEL------IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSL  364 (433)
T ss_dssp             ESSCSTTCHHHHHH------GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred             EcCccccccccccc------cCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeeccCCc
Confidence            8765421   2221      267999998633  356667788999999999999998765443

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.58  E-value=1.1e-14  Score=118.12  Aligned_cols=106  Identities=24%  Similarity=0.344  Sum_probs=90.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++++|||+|||+|..++.+|..   ..+|+++|+++.+++.+++++..++++ +++++.+|+.+.++.+...   .++||
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~~---~~~fD  281 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKE---GERFD  281 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHhc---CCCee
Confidence            6789999999999999999987   468999999999999999999999987 5999999999887664322   46899


Q ss_pred             EEEEeCCc------------cccHHHHHHHHhcccCCeEEEEecc
Q 029414          106 YAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       106 ~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +|++|++.            ..+..++..+.++|+|||++++...
T Consensus       282 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          282 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            99999763            3456788899999999999999653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.58  E-value=2.1e-14  Score=116.69  Aligned_cols=119  Identities=17%  Similarity=0.236  Sum_probs=92.5

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      .+...+....++..++  .++++|||+|||+|..++.+|..   +.+|+++|+++.+++.++++++.+++..  ++.++|
T Consensus       197 ~f~dqr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D  269 (393)
T 4dmg_A          197 YYLDQRENRRLFEAMV--RPGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGE  269 (393)
T ss_dssp             SCGGGHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESC
T ss_pred             cCCCHHHHHHHHHHHh--cCCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEcc
Confidence            3344455555544332  23789999999999999999986   4469999999999999999999998864  456999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEecc
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +.+.++.+      .+.||+|++|++.            ..+..+++.+.++|+|||.|++...
T Consensus       270 ~~~~l~~~------~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          270 ALPTLRGL------EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             HHHHHHTC------CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHh------cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            98877654      2449999999763            3456788889999999999996543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.57  E-value=2.6e-15  Score=118.14  Aligned_cols=109  Identities=15%  Similarity=0.077  Sum_probs=89.1

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+..++....++.+++++|+++.+++.+++++...++.++++++.+|+.+..  +      .++
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~~  187 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD--T------REG  187 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC--C------CSC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC--c------cCC
Confidence            35678999999999999999973333478999999999999999999998888778999999987631  1      378


Q ss_pred             eeEEEEeCCc---cc---cHHHHHHHHhcccCCeEEEEecccc
Q 029414          104 FDYAFVDADK---DN---YCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       104 fD~i~id~~~---~~---~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ||+|++....   .+   ...+++.+.+.|+|||.+++.+...
T Consensus       188 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          188 YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             EEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred             eEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            9999987642   12   2347899999999999999987544

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.57  E-value=6.8e-15  Score=111.32  Aligned_cols=104  Identities=12%  Similarity=0.107  Sum_probs=86.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...+...+++++.+|+.+..+        .++||
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~fD  134 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP--------TELFD  134 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC--------SSCEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC--------CCCee
Confidence            4569999999999999999873   679999999999999999999876555689999999876321        36899


Q ss_pred             EEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          106 YAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       106 ~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      +|++...     ..+...+++.+.+.|+|||.+++.....
T Consensus       135 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  174 (235)
T 3lcc_A          135 LIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI  174 (235)
T ss_dssp             EEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             EEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence            9998754     2366788999999999999999865443

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.57  E-value=1.7e-14  Score=112.22  Aligned_cols=115  Identities=8%  Similarity=0.091  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHH---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           14 AGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        14 ~~~~l~~l~~~---~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      ....+..++..   .++.+|||+|||+|..+..++...  +.+++++|+++++++.+++++...++.+++++..+|..+.
T Consensus        49 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  126 (287)
T 1kpg_A           49 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF  126 (287)
T ss_dssp             HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC
Confidence            33445555443   356799999999999999999654  3599999999999999999999888877999999998542


Q ss_pred             HHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414           91 LDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                                .++||+|++...     ..+...+++.+.+.|||||.+++.+...
T Consensus       127 ----------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          127 ----------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             ----------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             ----------CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence                      268999998754     2466889999999999999999977654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.57  E-value=1.2e-14  Score=110.27  Aligned_cols=112  Identities=11%  Similarity=0.133  Sum_probs=91.6

Q ss_pred             HHHHHHHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhh
Q 029414           18 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   96 (194)
Q Consensus        18 l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~   96 (194)
                      |..+.... ++.+|||||||+|+.++.++...+ ..+|+++|+++..++.|+++++.+++.+++++..+|..+.+..   
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~---   87 (244)
T 3gnl_A           12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK---   87 (244)
T ss_dssp             HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---
T ss_pred             HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc---
Confidence            44455544 456999999999999999999754 6799999999999999999999999988899999998775432   


Q ss_pred             cCCCCCceeEEEEeCC-ccccHHHHHHHHhcccCCeEEEEec
Q 029414           97 YSENEGSFDYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                          .++||+|++.+. ..-...+++.....|++++.+|+.-
T Consensus        88 ----~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~  125 (244)
T 3gnl_A           88 ----KDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQP  125 (244)
T ss_dssp             ----GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred             ----cccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEc
Confidence                135999987543 3456778888899999999999974

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.57  E-value=2.8e-15  Score=113.26  Aligned_cols=104  Identities=17%  Similarity=0.238  Sum_probs=85.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...+   +++++.+|..+...        .++|
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~--------~~~f  110 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF--------EEKY  110 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC--------CSCE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC--------CCCc
Confidence            3568999999999999999999886 7899999999999999999875443   89999999866311        2689


Q ss_pred             eEEEEeCCcc-----ccHHHHHHHHhcccCCeEEEEecccc
Q 029414          105 DYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       105 D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      |+|++.....     ....+++.+.+.|+|||.+++.+...
T Consensus       111 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          111 DMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH  151 (234)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             eEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            9999986522     22358999999999999999976543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.57  E-value=1.3e-14  Score=108.34  Aligned_cols=104  Identities=16%  Similarity=0.149  Sum_probs=79.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...+ .++|+++|+++.+++.+.+..+..   +++.++.+|+.+......    ..++|
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~----~~~~f  127 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSG----IVEKV  127 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTT----TCCCE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcc----cccce
Confidence            4567999999999999999999886 789999999999887766655543   378888888755311000    13689


Q ss_pred             eEEEEeCCccc-cHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+|+++...+. ...+++.+.+.|||||.+++.
T Consensus       128 D~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          128 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            99999865433 234489999999999999996

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.57  E-value=1.1e-14  Score=111.21  Aligned_cols=105  Identities=16%  Similarity=0.219  Sum_probs=85.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc--------CCCCcEEEEecchHHHHHHHhhc
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--------GVDHKINFIESEALSVLDQLLKY   97 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~~~~~~   97 (194)
                      ++.+|||+|||+|..+..+|...+ ..+++++|+++.+++.+++++...        +++ +++++.+|+.+.++...  
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~--  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFF--  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTS--
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhc--
Confidence            567899999999999999999876 789999999999999999998876        664 89999999977444321  


Q ss_pred             CCCCCceeEEEEeCCccc-----------cHHHHHHHHhcccCCeEEEEe
Q 029414           98 SENEGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  136 (194)
                        ..+.+|.|++....+.           ...+++.+.+.|+|||.+++.
T Consensus       125 --~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          125 --EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             --CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             --cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence              2468999987643221           257899999999999999984

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.57  E-value=1.4e-14  Score=112.35  Aligned_cols=105  Identities=15%  Similarity=0.146  Sum_probs=89.3

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..++.+|...  ..+|+++|++|.+++.+++|++.+++.++++++++|+.++..        .+.
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~--------~~~  192 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENI  192 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc--------ccC
Confidence            4568899999999999999999873  469999999999999999999999999899999999976532        368


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ||.|+++.+. ....+++.+.++|++||+|.++...
T Consensus       193 ~D~Vi~~~p~-~~~~~l~~a~~~lk~gG~ih~~~~~  227 (278)
T 3k6r_A          193 ADRILMGYVV-RTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             EEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCEEEECCCC-cHHHHHHHHHHHcCCCCEEEEEeee
Confidence            9999998653 3346788899999999999886543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.57  E-value=6e-15  Score=116.38  Aligned_cols=107  Identities=13%  Similarity=0.244  Sum_probs=90.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...  +.+|+++|+++.+++.+++++...++.++++++.+|+.+..  +     ..++|
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-----~~~~f  186 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP--F-----DKGAV  186 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--C-----CTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC--C-----CCCCE
Confidence            356799999999999999999874  46999999999999999999999998889999999986531  1     14789


Q ss_pred             eEEEEeCC--ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          105 DYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       105 D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      |+|++...  .-+...+++.+.+.|+|||.+++.+...
T Consensus       187 D~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  224 (312)
T 3vc1_A          187 TASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCW  224 (312)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             eEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccc
Confidence            99998754  2247889999999999999999876443

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.57  E-value=1.9e-14  Score=113.62  Aligned_cols=115  Identities=9%  Similarity=0.114  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHH---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           14 AGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        14 ~~~~l~~l~~~---~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      ....+..++..   .++.+|||+|||+|..+..++...  +.+++++|+++++++.+++++...++.+++++..+|..+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  152 (318)
T 2fk8_A           75 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF  152 (318)
T ss_dssp             HHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC
Confidence            34444555443   356799999999999999999874  4599999999999999999999988877899999998553


Q ss_pred             HHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414           91 LDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                                .++||+|++...     ..+...+++.+.+.|+|||.+++.+...
T Consensus       153 ----------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  197 (318)
T 2fk8_A          153 ----------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS  197 (318)
T ss_dssp             ----------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             ----------CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence                      267999998854     2566889999999999999999977654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.56  E-value=3.1e-14  Score=108.91  Aligned_cols=112  Identities=18%  Similarity=0.162  Sum_probs=90.9

Q ss_pred             HHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc-CCCCcEEEEecchHHHHHHH
Q 029414           16 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        16 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~   94 (194)
                      ..+...+...++.+|||+|||+|..+..++..+.+.++++++|+++++++.+++++... + .+++++..+|+.+.  .+
T Consensus        86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~--~~  162 (258)
T 2pwy_A           86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEA--EL  162 (258)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGC--CC
T ss_pred             HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhc--CC
Confidence            34444445567789999999999999999998544789999999999999999999887 7 45899999998764  11


Q ss_pred             hhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           95 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                           ..++||+|+++..  +...+++.+.+.|+|||.+++..
T Consensus       163 -----~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          163 -----EEAAYDGVALDLM--EPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             -----CTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             -----CCCCcCEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence                 1367999999753  44477899999999999999864

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.56  E-value=2.8e-14  Score=104.86  Aligned_cols=107  Identities=15%  Similarity=0.175  Sum_probs=88.0

Q ss_pred             HHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414           20 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        20 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      ..+...++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...+++ ++++..+|..+..  +     
T Consensus        26 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--~-----   94 (199)
T 2xvm_A           26 EAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLT--F-----   94 (199)
T ss_dssp             HHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCC--C-----
T ss_pred             HHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCC--C-----
Confidence            3344557789999999999999999986   569999999999999999999888875 6999999986631  1     


Q ss_pred             CCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          100 NEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       100 ~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                       .++||+|++...     ..+...+++.+.+.|+|||.+++.+.
T Consensus        95 -~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A           95 -DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             -CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence             368999998865     23667889999999999999877443

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.56  E-value=2.2e-14  Score=112.96  Aligned_cols=107  Identities=15%  Similarity=0.198  Sum_probs=86.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHH---cCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      .++++|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++..   ....++++++.+|+.+.....     ..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-----~~  167 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-----PD  167 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-----CT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-----cC
Confidence            4678999999999999999998644 67999999999999999998843   222358999999998865431     14


Q ss_pred             CceeEEEEeCCccc-------cHHHHHHHHhcccCCeEEEEec
Q 029414          102 GSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       102 ~~fD~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ++||+|++|.....       ...+++.+.+.|+|||++++..
T Consensus       168 ~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  210 (304)
T 3bwc_A          168 NTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG  210 (304)
T ss_dssp             TCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            68999999875221       1688999999999999999963

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.56  E-value=1.5e-14  Score=109.62  Aligned_cols=115  Identities=21%  Similarity=0.318  Sum_probs=91.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      +.+.....+...+...++.+|||+|||+|..+..++...+  .+++++|+++..++.+++++...+++ ++++..+|...
T Consensus        75 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~  151 (235)
T 1jg1_A           75 SAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSK  151 (235)
T ss_dssp             CCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGG
T ss_pred             ccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCccc
Confidence            4555666666666666778999999999999999999864  79999999999999999999998876 69999999733


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .++.       ..+||+|+++.......   +.+.+.|+|||.+++..
T Consensus       152 ~~~~-------~~~fD~Ii~~~~~~~~~---~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          152 GFPP-------KAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             CCGG-------GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEEE
T ss_pred             CCCC-------CCCccEEEECCcHHHHH---HHHHHhcCCCcEEEEEE
Confidence            2222       24699999987644432   46789999999999853

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.56  E-value=1.6e-14  Score=108.58  Aligned_cols=104  Identities=18%  Similarity=0.246  Sum_probs=84.4

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC----CCcEEEEecchHHHHHHHhhcCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      ..++.+|||+|||+|..+..++...++.++++++|+++.+++.+++++...+.    .+++++..+|..+....      
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------  148 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE------  148 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc------
Confidence            44678999999999999999998764467999999999999999999988664    34899999998643221      


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                       .++||+|+++.....   +++.+.+.|+|||.+++..
T Consensus       149 -~~~fD~i~~~~~~~~---~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          149 -EAPYDAIHVGAAAPV---VPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             -GCCEEEEEECSBBSS---CCHHHHHTEEEEEEEEEEE
T ss_pred             -CCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEE
Confidence             368999999876443   3467889999999999953

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.56  E-value=7.1e-15  Score=111.51  Aligned_cols=107  Identities=16%  Similarity=0.178  Sum_probs=86.8

Q ss_pred             HHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHh
Q 029414           16 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   95 (194)
Q Consensus        16 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~   95 (194)
                      .++..+....++.+|||+|||+|..+..++...   .+++++|+++.+++.+++++..     +++++.+|..+..    
T Consensus        32 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~----   99 (250)
T 2p7i_A           32 FMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ----   99 (250)
T ss_dssp             HHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC----
T ss_pred             HHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC----
Confidence            344444445677899999999999999999864   4899999999999999987632     7999999987651    


Q ss_pred             hcCCCCCceeEEEEeCC---ccccHHHHHHHH-hcccCCeEEEEecc
Q 029414           96 KYSENEGSFDYAFVDAD---KDNYCNYHERLM-KLLKVGGIAVYDNT  138 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~---~~~~~~~~~~~~-~~L~~gG~lv~~~~  138 (194)
                          ..++||+|++...   ..+...+++.+. +.|+|||.+++...
T Consensus       100 ----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          100 ----LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             ----CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ----cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence                1478999998865   346678999999 99999999999654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.56  E-value=1.6e-14  Score=115.07  Aligned_cols=116  Identities=14%  Similarity=0.195  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC----------CCCcEEEEe
Q 029414           15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG----------VDHKINFIE   84 (194)
Q Consensus        15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----------~~~~v~~~~   84 (194)
                      ...+...+...++.+|||+|||+|..+..++....+.++++++|+++.+++.|++++...+          ...++++..
T Consensus        94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            4444445556678899999999999999999975446899999999999999999998643          235899999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +|+.+....+.     .++||+|+++...  ...+++.+.+.|+|||.+++..
T Consensus       174 ~d~~~~~~~~~-----~~~fD~V~~~~~~--~~~~l~~~~~~LkpgG~lv~~~  219 (336)
T 2b25_A          174 KDISGATEDIK-----SLTFDAVALDMLN--PHVTLPVFYPHLKHGGVCAVYV  219 (336)
T ss_dssp             SCTTCCC------------EEEEEECSSS--TTTTHHHHGGGEEEEEEEEEEE
T ss_pred             CChHHcccccC-----CCCeeEEEECCCC--HHHHHHHHHHhcCCCcEEEEEe
Confidence            99876432221     3579999998643  2347889999999999999743

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.56  E-value=4.4e-15  Score=112.12  Aligned_cols=125  Identities=18%  Similarity=0.177  Sum_probs=90.7

Q ss_pred             CccccccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHhH---HHHHHHcCC
Q 029414            1 MLILRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIG---LPIIKKAGV   76 (194)
Q Consensus         1 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a---~~~~~~~~~   76 (194)
                      |-++.+...+.-....++....  .++.+|||||||+|..+..+|...+ +.+|+++|++++ +++.|   +++....++
T Consensus         1 ~~~l~g~~~~~~~~~~~~~~~~--~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~   77 (225)
T 3p2e_A            1 MLILKGTKTVDLSKDELTEIIG--QFDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGL   77 (225)
T ss_dssp             -CEEETTEEECCCHHHHHHHHT--TCSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCC
T ss_pred             CccccccccccCCHHHHHHHhC--CCCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence            4455555445544555554433  4667999999999999999997655 789999999954 55554   877777777


Q ss_pred             CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc--------cccHHHHHHHHhcccCCeEEEE
Q 029414           77 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        77 ~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--------~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      + ++++..+|+.+.....      ...+|.+++....        .....+++.+.+.|||||.+++
T Consensus        78 ~-~v~~~~~d~~~l~~~~------~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           78 S-NVVFVIAAAESLPFEL------KNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             S-SEEEECCBTTBCCGGG------TTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             C-CeEEEEcCHHHhhhhc------cCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            6 8999999987652111      2568888876431        1345688999999999999999

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.56  E-value=7.3e-15  Score=118.76  Aligned_cols=103  Identities=13%  Similarity=0.107  Sum_probs=86.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC--cEEEEecchHHHHHHHhhcCCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH--KINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..+.+|||+|||+|..++.++...+ +.+|+++|+++.+++.+++++..+++.+  +++++.+|..+.++        .+
T Consensus       221 ~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--------~~  291 (375)
T 4dcm_A          221 NLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PF  291 (375)
T ss_dssp             SCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--------TT
T ss_pred             cCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--------CC
Confidence            3457999999999999999999876 7899999999999999999999988653  58889999876321        36


Q ss_pred             ceeEEEEeCCc--------cccHHHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~--------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +||+|+++.+.        .....+++.+.+.|+|||.+++.
T Consensus       292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            89999998652        12346789999999999999984

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.55  E-value=7.6e-14  Score=120.93  Aligned_cols=110  Identities=20%  Similarity=0.343  Sum_probs=92.9

Q ss_pred             HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecchHHHHHHHhhcCCC
Q 029414           22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ....++++|||+|||+|..++.++...  ..+|+++|+|+.+++.++++++.+++. ++++++++|+.+.++..      
T Consensus       535 ~~~~~g~~VLDlg~GtG~~sl~aa~~g--a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~------  606 (703)
T 3v97_A          535 GQMSKGKDFLNLFSYTGSATVHAGLGG--ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA------  606 (703)
T ss_dssp             HHHCTTCEEEEESCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC------
T ss_pred             HHhcCCCcEEEeeechhHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc------
Confidence            334578899999999999999998752  357999999999999999999999987 68999999999977653      


Q ss_pred             CCceeEEEEeCCc--------------cccHHHHHHHHhcccCCeEEEEeccc
Q 029414          101 EGSFDYAFVDADK--------------DNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       101 ~~~fD~i~id~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      .++||+|++|++.              ..+..+++.+.++|+|||+|++....
T Consensus       607 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          607 NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            4789999999752              23556788889999999999987654

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.55  E-value=1.8e-14  Score=111.77  Aligned_cols=117  Identities=17%  Similarity=0.198  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc-C-CCCcEEEEecchHH
Q 029414           12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-G-VDHKINFIESEALS   89 (194)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~-~~~~v~~~~~d~~~   89 (194)
                      +.....+...+...++.+|||+|||+|..+..++..+.+.++++++|+++++++.+++++... + +.+++++..+|+.+
T Consensus        85 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~  164 (280)
T 1i9g_A           85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  164 (280)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence            434444444455567789999999999999999987544789999999999999999999887 5 44589999999876


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ..  +     ..++||+|+++..  +...+++.+.+.|+|||.+++..
T Consensus       165 ~~--~-----~~~~~D~v~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          165 SE--L-----PDGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             CC--C-----CTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cC--C-----CCCceeEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence            41  1     1367999999764  44477899999999999999964

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.55  E-value=5.6e-14  Score=106.28  Aligned_cols=106  Identities=14%  Similarity=0.128  Sum_probs=79.9

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+..+|..+.+.++|+++|+++.+++...+.....   .|+.++.+|+.......    ...++
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~----~~~~~  146 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYK----SVVEN  146 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTT----TTCCC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhh----ccccc
Confidence            446789999999999999999998766899999999998876554444333   38999999986531100    01368


Q ss_pred             eeEEEEeCCccccHHHH-HHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDADKDNYCNYH-ERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~-~~~~~~L~~gG~lv~~  136 (194)
                      ||+|++|...++....+ +.+.+.|||||.+++.
T Consensus       147 ~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          147 VDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence            99999998765555554 4455599999999986

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.55  E-value=5.3e-14  Score=113.76  Aligned_cols=115  Identities=12%  Similarity=0.036  Sum_probs=89.6

Q ss_pred             HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHH-------HHcCCC-CcEEEEecchHHHHHH
Q 029414           22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII-------KKAGVD-HKINFIESEALSVLDQ   93 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-------~~~~~~-~~v~~~~~d~~~~~~~   93 (194)
                      +...++.+|||+|||+|..++.+|...+ ..+++++|+++.+++.|+++.       ...++. .+++++++|+.+....
T Consensus       169 l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~  247 (438)
T 3uwp_A          169 IKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR  247 (438)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHH
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccc
Confidence            3455778999999999999999998765 567999999999999998764       345652 5899999999774221


Q ss_pred             HhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414           94 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      ..     ...||+||+...  .++....+..+.+.|||||.||+.+.+.+.
T Consensus       248 d~-----~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~  293 (438)
T 3uwp_A          248 ER-----IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPL  293 (438)
T ss_dssp             HH-----HHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred             cc-----cCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence            00     146999998754  456677788899999999999998776544

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.55  E-value=4.4e-14  Score=109.13  Aligned_cols=112  Identities=13%  Similarity=0.095  Sum_probs=86.2

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc------hHHhHHHHHHHcCCCCcEEEEecc-hHHHHHHHhh
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE------TYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLK   96 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~------~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~   96 (194)
                      ..++.+|||||||+|..+..++...++..+++++|+++.      +++.+++++...++.+++++..+| .......+  
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--  118 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPI--  118 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGG--
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCC--
Confidence            346789999999999999999998643689999999997      999999999988876789999998 22110011  


Q ss_pred             cCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414           97 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                         ..++||+|++...   ..+...+++.+..+++|||.+++.+...
T Consensus       119 ---~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          119 ---ADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             ---TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             ---CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence               1478999998865   2344556666667777899999976544

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.55  E-value=5.6e-14  Score=109.31  Aligned_cols=103  Identities=14%  Similarity=0.184  Sum_probs=86.4

Q ss_pred             HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           23 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ...++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++...++  +++++.+|..+...        .+
T Consensus       117 ~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--------~~  183 (286)
T 3m70_A          117 KIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI--------QE  183 (286)
T ss_dssp             HHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC--------CS
T ss_pred             hccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc--------cC
Confidence            3447889999999999999999986   56999999999999999999998886  79999999866321        37


Q ss_pred             ceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          103 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       103 ~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +||+|++...     .+....+++.+.+.|+|||.+++...
T Consensus       184 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          184 NYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             CEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            8999999764     34456899999999999999776433

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.55  E-value=5.1e-15  Score=114.85  Aligned_cols=108  Identities=14%  Similarity=0.255  Sum_probs=87.3

Q ss_pred             HHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc-CCCCcEEEEecchHHHHHHHhhc
Q 029414           19 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKY   97 (194)
Q Consensus        19 ~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~   97 (194)
                      ...+...++.+|||+|||+|..+..+++.+.++.+++++|+++++++.+++++... +. +++++..+|+.+.+      
T Consensus       103 ~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~------  175 (275)
T 1yb2_A          103 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFI------  175 (275)
T ss_dssp             ---CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCC------
T ss_pred             HHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccC------
Confidence            33334556789999999999999999987434789999999999999999999887 74 48999999987621      


Q ss_pred             CCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           98 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                        ..++||+|+++..  +...+++.+.+.|+|||.+++..
T Consensus       176 --~~~~fD~Vi~~~~--~~~~~l~~~~~~LkpgG~l~i~~  211 (275)
T 1yb2_A          176 --SDQMYDAVIADIP--DPWNHVQKIASMMKPGSVATFYL  211 (275)
T ss_dssp             --CSCCEEEEEECCS--CGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             --cCCCccEEEEcCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence              1367999999653  44578899999999999999964

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.54  E-value=1.5e-14  Score=108.86  Aligned_cols=103  Identities=18%  Similarity=0.211  Sum_probs=83.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH--HHHhhcCCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSENEG  102 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~  102 (194)
                      .++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++....   ++++++.+|+.+..  ..+      .+
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~------~~  142 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRAL------VP  142 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTT------CC
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcc------cC
Confidence            35679999999999999999988644689999999999999999887654   48999999986631  111      35


Q ss_pred             ceeEEEEeCCccccH-HHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~  136 (194)
                      +||+|+++....... .+++.+.+.|+|||.+++.
T Consensus       143 ~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          143 KVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            799999987644443 4489999999999999986

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.54  E-value=7.6e-15  Score=109.52  Aligned_cols=107  Identities=20%  Similarity=0.210  Sum_probs=85.0

Q ss_pred             HHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhc
Q 029414           18 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   97 (194)
Q Consensus        18 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~   97 (194)
                      +..+....++.+|||+|||+|..+..++..   ..+++++|+++.+++.+++++...+   +++++.+|..+.. .    
T Consensus        43 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~-~----  111 (216)
T 3ofk_A           43 LRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS-T----  111 (216)
T ss_dssp             HHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC-C----
T ss_pred             HHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC-C----
Confidence            333333445679999999999999999986   3599999999999999999886543   8999999987643 1    


Q ss_pred             CCCCCceeEEEEeCCc------cccHHHHHHHHhcccCCeEEEEecc
Q 029414           98 SENEGSFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                         .++||+|++....      .....+++.+.+.|+|||.+++...
T Consensus       112 ---~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          112 ---AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             ---SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ---CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence               4789999998542      2225679999999999999999653

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.54  E-value=3e-14  Score=108.37  Aligned_cols=114  Identities=24%  Similarity=0.327  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414           12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   91 (194)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   91 (194)
                      +.....+...+...++.+|||+|||+|..+..++..   ..+++++|+++++++.+++++...++++++++..+|..+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  153 (248)
T 2yvl_A           77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE  153 (248)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC
T ss_pred             chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc
Confidence            444445555555557789999999999999999987   57999999999999999999999888678999999986632


Q ss_pred             HHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           92 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .       ..++||+|+++..  +...+++.+.+.|+|||.+++..
T Consensus       154 ~-------~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          154 V-------PEGIFHAAFVDVR--EPWHYLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             C-------CTTCBSEEEECSS--CGGGGHHHHHHHBCTTCEEEEEE
T ss_pred             c-------CCCcccEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence            0       1357999999754  44567899999999999999954

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.54  E-value=1.4e-13  Score=101.62  Aligned_cols=110  Identities=12%  Similarity=-0.012  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH
Q 029414           13 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   92 (194)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~   92 (194)
                      ....++..+.... +.+|||+|||+|..+..++..   +.+++++|+++.+++.++++.      ++++++.+|..+.. 
T Consensus        29 ~~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~-   97 (203)
T 3h2b_A           29 PDRVLIEPWATGV-DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLS-   97 (203)
T ss_dssp             TTHHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGG-
T ss_pred             HHHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccc-
Confidence            3455666666554 789999999999999999986   559999999999999999872      37899999987642 


Q ss_pred             HHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           93 QLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        93 ~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                       +     ..++||+|++...     ..+...+++.+.+.|+|||.+++....
T Consensus        98 -~-----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  143 (203)
T 3h2b_A           98 -D-----SPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFS  143 (203)
T ss_dssp             -G-----SCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             -c-----CCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence             1     1478999999764     236788999999999999999997543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.54  E-value=8.7e-15  Score=111.16  Aligned_cols=117  Identities=13%  Similarity=0.184  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHc----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           14 AGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        14 ~~~~l~~l~~~~----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      ...++..+....    ++.+|||+|||+|..+..++...  ..+++++|+++.+++.+++++...+ ..+++++.+|..+
T Consensus        63 ~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~  139 (241)
T 2ex4_A           63 SRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQD  139 (241)
T ss_dssp             HHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGG
T ss_pred             HHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhh
Confidence            334444444432    47899999999999999998764  4699999999999999999987664 2378999999765


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCc-----cccHHHHHHHHhcccCCeEEEEecccc
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ...       ..++||+|++....     +....+++.+.+.|+|||.+++.+...
T Consensus       140 ~~~-------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  188 (241)
T 2ex4_A          140 FTP-------EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  188 (241)
T ss_dssp             CCC-------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cCC-------CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence            321       13589999998652     124578999999999999999965443

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.54  E-value=9.9e-14  Score=108.13  Aligned_cols=119  Identities=14%  Similarity=0.171  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC---CcEEEEecchH
Q 029414           12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEAL   88 (194)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~   88 (194)
                      .....++..++...++.+|||+|||+|..+..++..   +.+++++|+++.+++.++++....+..   .++.+..+|..
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~  119 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL  119 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh
Confidence            344566666666677899999999999999999986   459999999999999999887554322   36788999987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeC-C---ccc-------cHHHHHHHHhcccCCeEEEEec
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDA-D---KDN-------YCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~-~---~~~-------~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +....+.    ..++||+|++.+ .   ..+       ...+++.+.+.|+|||++++..
T Consensus       120 ~~~~~~~----~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          120 TLDKDVP----AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             GHHHHSC----CTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hCccccc----cCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            7643321    147899999963 2   233       7789999999999999999864

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.54  E-value=1.6e-14  Score=117.14  Aligned_cols=116  Identities=14%  Similarity=0.261  Sum_probs=91.3

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc-----C-CC-CcEEEEecchHHHHHHHhh
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-----G-VD-HKINFIESEALSVLDQLLK   96 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----~-~~-~~v~~~~~d~~~~~~~~~~   96 (194)
                      ..++.+|||+|||+|..+..++...+++.+|+++|+++.+++.+++++...     + .. ++++++++|+.+.... ..
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~-~~  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA-EP  159 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC-BS
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc-cc
Confidence            346789999999999999999998755789999999999999999998765     3 22 5899999998664210 00


Q ss_pred             cCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414           97 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      .....++||+|++...   ..+...+++.+.+.|||||++++.+...
T Consensus       160 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            0012468999999875   3567889999999999999999976544

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.53  E-value=3.5e-14  Score=113.95  Aligned_cols=119  Identities=16%  Similarity=0.160  Sum_probs=96.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      ..+..++.+..++...++.+|||+|||+|..++.+|....+..+++++|+++.+++.|++++...+++ ++++.++|+.+
T Consensus       187 l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~  265 (354)
T 3tma_A          187 LTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARH  265 (354)
T ss_dssp             CCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGG
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhh
Confidence            34445555555555556789999999999999999997623789999999999999999999999988 89999999977


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCcc-----------ccHHHHHHHHhcccCCeEEEEe
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ....       .+.||+|++|.+..           .+..+++.+.+.|+|||.+++.
T Consensus       266 ~~~~-------~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          266 LPRF-------FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             GGGT-------CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             Cccc-------cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            5322       35689999987521           1367788899999999999985

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.53  E-value=9.3e-14  Score=111.85  Aligned_cols=110  Identities=15%  Similarity=0.122  Sum_probs=90.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||||||+|..+..+++.++ +.+++++|+ +.+++.+++++...++.++++++.+|..+.-..+      .++|
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------p~~~  249 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF------PTGF  249 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHST-TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC------CCCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC------CCCc
Confidence            4678999999999999999999987 889999999 9999999999988887779999999986520001      2579


Q ss_pred             eEEEEeCCc-----cccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          105 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       105 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      |+|++....     +....+++.+.+.|+|||.+++.+..++.
T Consensus       250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (363)
T 3dp7_A          250 DAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR  292 (363)
T ss_dssp             SEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred             CEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence            999987542     23457799999999999999997766543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.52  E-value=4.3e-14  Score=104.38  Aligned_cols=111  Identities=14%  Similarity=0.104  Sum_probs=87.3

Q ss_pred             HHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhc
Q 029414           18 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   97 (194)
Q Consensus        18 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~   97 (194)
                      +..++...++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...+.  ++++..+|..+..  +   
T Consensus        21 l~~~~~~~~~~~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~---   90 (202)
T 2kw5_A           21 LVSVANQIPQGKILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFD--I---   90 (202)
T ss_dssp             HHHHHHHSCSSEEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBS--C---
T ss_pred             HHHHHHhCCCCCEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcC--C---
Confidence            344444333449999999999999999985   56999999999999999999988765  7899999986541  1   


Q ss_pred             CCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414           98 SENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        98 ~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                        ..++||+|++...   ..+...+++.+.+.|+|||.+++.....
T Consensus        91 --~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  134 (202)
T 2kw5_A           91 --VADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP  134 (202)
T ss_dssp             --CTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred             --CcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence              1368999998643   2356788999999999999999976543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.52  E-value=1.8e-14  Score=108.63  Aligned_cols=116  Identities=16%  Similarity=0.213  Sum_probs=87.8

Q ss_pred             CHHHHHHHHHHH--HHcCCCeEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCcchHHhHHHHHHHcCC----CCc
Q 029414           11 APDAGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPE-----DGQITAIDVNRETYEIGLPIIKKAGV----DHK   79 (194)
Q Consensus        11 ~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~~~~la~~~~~-----~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~   79 (194)
                      .+...+.+...+  ...++.+|||+|||+|+.+..++...+.     .++++++|+++++++.+++++...+.    .++
T Consensus        67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  146 (227)
T 1r18_A           67 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ  146 (227)
T ss_dssp             CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc
Confidence            444444444333  3446679999999999999999986541     26999999999999999999987651    238


Q ss_pred             EEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           80 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        80 v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +++..+|..+.++.       .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       147 v~~~~~d~~~~~~~-------~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          147 LLIVEGDGRKGYPP-------NAPYNAIHVGAAAPDT---PTELINQLASGGRLIVP  193 (227)
T ss_dssp             EEEEESCGGGCCGG-------GCSEEEEEECSCBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             eEEEECCcccCCCc-------CCCccEEEECCchHHH---HHHHHHHhcCCCEEEEE
Confidence            99999998763222       2689999998765443   36788999999999996

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.52  E-value=1.1e-14  Score=111.92  Aligned_cols=104  Identities=15%  Similarity=0.131  Sum_probs=81.1

Q ss_pred             HHHHHHHHHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414           16 QLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        16 ~~l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      +++..+.... ...+|||||||+|..+..++..   ..+|+++|+++.+++.|+++       +++++.++++.+..  +
T Consensus        28 ~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~--~   95 (257)
T 4hg2_A           28 ALFRWLGEVAPARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTG--L   95 (257)
T ss_dssp             HHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCC--C
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhc--c
Confidence            3444454443 3578999999999999999986   45999999999999877532       48999999986641  1


Q ss_pred             hhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEe
Q 029414           95 LKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                           .+++||+|++...  ..+...+++++.+.|||||+|++-
T Consensus        96 -----~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~  134 (257)
T 4hg2_A           96 -----PPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAV  134 (257)
T ss_dssp             -----CSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----cCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEE
Confidence                 2578999998754  335678899999999999999874

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.52  E-value=6.6e-14  Score=113.32  Aligned_cols=115  Identities=14%  Similarity=0.167  Sum_probs=93.4

Q ss_pred             CCHHHHHHHHHHHHHc-----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414           10 TAPDAGQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~-----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      ..+....++..+....     ++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++..+++.  ++++.
T Consensus       212 ~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~  286 (381)
T 3dmg_A          212 VDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK--AQALH  286 (381)
T ss_dssp             CCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEE
T ss_pred             CCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEE
Confidence            4556666676666543     5679999999999999999986   569999999999999999999988864  89999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCC--------ccccHHHHHHHHhcccCCeEEEEe
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDAD--------KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~--------~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|..+....       .++||+|+++..        ......+++.+.+.|+|||.+++.
T Consensus       287 ~D~~~~~~~-------~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          287 SDVDEALTE-------EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             CSTTTTSCT-------TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhhcccc-------CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            998765321       368999999854        234567889999999999999985

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.52  E-value=8.1e-14  Score=106.28  Aligned_cols=110  Identities=16%  Similarity=0.314  Sum_probs=87.2

Q ss_pred             HHHHHHHHHH---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414           15 GQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   91 (194)
Q Consensus        15 ~~~l~~l~~~---~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   91 (194)
                      ..++..++..   .++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...+.  +++++++|..+..
T Consensus        27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~  101 (252)
T 1wzn_A           27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA  101 (252)
T ss_dssp             HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC
T ss_pred             HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcc
Confidence            3445555543   34579999999999999999985   56999999999999999999987764  6899999987631


Q ss_pred             HHHhhcCCCCCceeEEEEeCC------ccccHHHHHHHHhcccCCeEEEEec
Q 029414           92 DQLLKYSENEGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                        .      .++||+|++...      ..+...+++.+.+.|+|||.++++.
T Consensus       102 --~------~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          102 --F------KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             --C------CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --c------CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence              1      367999998532      1345778899999999999999853

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.52  E-value=5.1e-14  Score=112.85  Aligned_cols=105  Identities=18%  Similarity=0.241  Sum_probs=87.3

Q ss_pred             HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           23 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ...++++|||+|||+|..+..+++. + ..+|+++|++ ++++.|++++...+++++++++.+|..+.  .+     ..+
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-----~~~  132 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEV--EL-----PVE  132 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTC--CC-----SSS
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHc--cC-----CCC
Confidence            3457899999999999999999987 2 5699999999 59999999999999887899999999765  11     137


Q ss_pred             ceeEEEEeCC------ccccHHHHHHHHhcccCCeEEEEec
Q 029414          103 SFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       103 ~fD~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +||+|+++..      ......+++.+.+.|+|||+++.+.
T Consensus       133 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  173 (349)
T 3q7e_A          133 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR  173 (349)
T ss_dssp             CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             ceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence            8999998642      3456778888899999999998644

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.52  E-value=1.7e-13  Score=111.03  Aligned_cols=105  Identities=19%  Similarity=0.127  Sum_probs=90.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc-EEEEecchHHHHH-HHhhcCCCCCc
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD-QLLKYSENEGS  103 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~-~~~~~~~~~~~  103 (194)
                      ++.+|||++||+|..++.+|...+...+|+++|+++++++.+++|++.+++.++ ++++.+|+.+.+. .+      .++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------~~~  125 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------GFG  125 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC------SSC
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh------CCC
Confidence            468999999999999999998754126899999999999999999999998766 9999999988876 53      367


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ||+|++|+ ......+++.+.+.|++||+|++.-
T Consensus       126 fD~V~lDP-~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          126 FDYVDLDP-FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcEEEECC-CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            99999998 3344678999999999999988854

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.52  E-value=5.2e-14  Score=106.09  Aligned_cols=112  Identities=24%  Similarity=0.332  Sum_probs=89.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      ..+.....+...+...++.+|||+|||+|..+..++...   .+++++|+++.+++.+++++...+   +++++.+|..+
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~  127 (231)
T 1vbf_A           54 TALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTL  127 (231)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccc
Confidence            455555555555556677899999999999999999874   699999999999999999987665   79999999876


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ..+.       .++||+|+++.......   +.+.+.|+|||.+++..
T Consensus       128 ~~~~-------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          128 GYEE-------EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             CCGG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEE
T ss_pred             cccc-------CCCccEEEECCcHHHHH---HHHHHHcCCCcEEEEEE
Confidence            3221       36899999987644332   46789999999999864

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.51  E-value=2.5e-13  Score=109.81  Aligned_cols=123  Identities=16%  Similarity=0.195  Sum_probs=97.3

Q ss_pred             ccCCCCHHHHHHH-HHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc----------
Q 029414            6 AMMGTAPDAGQLM-AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA----------   74 (194)
Q Consensus         6 ~~~~~~~~~~~~l-~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----------   74 (194)
                      .+++........+ ...+...++.+|||+|||+|..++.+|...+ ..+|+++|+++++++.+++|++.+          
T Consensus        26 ~F~np~~~~nr~l~~~~l~~~~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~  104 (378)
T 2dul_A           26 VFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKG  104 (378)
T ss_dssp             CCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSS
T ss_pred             ceeCCchHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccc
Confidence            3444444444433 2233334788999999999999999999875 678999999999999999999998          


Q ss_pred             -----CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           75 -----GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        75 -----~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                           ++. +++++++|+.+.+...      .+.||+|++|+. .....+++.+++.|++||++++..
T Consensus       105 ~~~~~gl~-~i~v~~~Da~~~~~~~------~~~fD~I~lDP~-~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          105 RAILKGEK-TIVINHDDANRLMAER------HRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             EEEEESSS-EEEEEESCHHHHHHHS------TTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccCCC-ceEEEcCcHHHHHHhc------cCCCCEEEeCCC-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence                 775 5999999998876653      357999999874 344688999999999999988753

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.51  E-value=3.1e-14  Score=106.04  Aligned_cols=109  Identities=15%  Similarity=0.172  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414           15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      ..++..+....++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++    .+. .+++++.+|..+.   .
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~---~  103 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW---T  103 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC---C
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC---C
Confidence            344455544556789999999999999999987   5699999999999999887    344 4899999998765   1


Q ss_pred             hhcCCCCCceeEEEEeCCc---cc--cHHHHHHHHhcccCCeEEEEeccc
Q 029414           95 LKYSENEGSFDYAFVDADK---DN--YCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~---~~--~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                           ..++||+|++....   .+  ...+++.+.+.|+|||.+++.+..
T Consensus       104 -----~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          104 -----PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             -----CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -----CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence                 14789999998652   22  367899999999999999997653

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.51  E-value=9.6e-15  Score=112.01  Aligned_cols=104  Identities=17%  Similarity=0.231  Sum_probs=86.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...  +.+++++|+++.+++.+++++...   ++++++.+|..+. + +     ..++|
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~-~-----~~~~f  121 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK-E-F-----PENNF  121 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC-C-C-----CTTCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC-C-C-----CCCcE
Confidence            356799999999999999999874  569999999999999999887544   4899999998664 1 1     14789


Q ss_pred             eEEEEeCC---c--cccHHHHHHHHhcccCCeEEEEecccc
Q 029414          105 DYAFVDAD---K--DNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       105 D~i~id~~---~--~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      |+|++...   .  .+...+++.+.+.|+|||.+++.+...
T Consensus       122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  162 (266)
T 3ujc_A          122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA  162 (266)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            99999865   2  567788999999999999999987543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.51  E-value=4.2e-14  Score=104.84  Aligned_cols=118  Identities=12%  Similarity=0.186  Sum_probs=90.8

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      ......++..+....++.+|||+|||+|..+..++..  .+.+++++|+++.+++.+++++...+  .++++..+|..+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~   83 (209)
T 2p8j_A            8 QPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKL   83 (209)
T ss_dssp             CTHHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSC
T ss_pred             hhhHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhC
Confidence            3345566666666667889999999999975544433  26799999999999999999988766  3688999988653


Q ss_pred             HHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           91 LDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                       + +     ..++||+|++...     ..+...+++.+.+.|+|||.+++....
T Consensus        84 -~-~-----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           84 -P-F-----KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             -C-S-----CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -C-C-----CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence             1 1     1468999998654     145678899999999999999997654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.51  E-value=1.8e-13  Score=102.26  Aligned_cols=105  Identities=11%  Similarity=0.107  Sum_probs=83.5

Q ss_pred             HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ....++.+|||+|||+|..+..++..   +.+++++|+++.+++.++++       .++.+..++..+.......   ..
T Consensus        48 ~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~---~~  114 (227)
T 3e8s_A           48 ILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVP---VG  114 (227)
T ss_dssp             HHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSC---CC
T ss_pred             hhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccc---cC
Confidence            33456799999999999999999986   56999999999999999877       3677888888665222111   13


Q ss_pred             CceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          102 GSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       102 ~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ++||+|++...  ..+...+++.+.+.|+|||.+++.+..
T Consensus       115 ~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~  154 (227)
T 3e8s_A          115 KDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLH  154 (227)
T ss_dssp             CCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecC
Confidence            46999998755  567789999999999999999997653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.51  E-value=3.2e-14  Score=108.68  Aligned_cols=98  Identities=10%  Similarity=0.205  Sum_probs=82.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..++...+  .+++++|+++.+++.+++++.    ..+++++.+|+.+..  +     ..++||
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~--~-----~~~~fD  110 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIA--I-----EPDAYN  110 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCC--C-----CTTCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCC--C-----CCCCeE
Confidence            578999999999999999998743  399999999999999998865    358999999986531  1     147899


Q ss_pred             EEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414          106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|++...   ..+...+++.+.+.|+|||.+++.
T Consensus       111 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          111 VVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence            9999865   356788999999999999999996

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.51  E-value=2.1e-13  Score=107.43  Aligned_cols=123  Identities=19%  Similarity=0.148  Sum_probs=92.7

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      ......++..++...++.+|||+|||+|..+..+|..+...++|+++|+++.+++.+++++++.++. +++++.+|+.+.
T Consensus        87 Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~  165 (309)
T 2b9e_A           87 QDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAV  165 (309)
T ss_dssp             CCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGS
T ss_pred             ECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhc
Confidence            3344455555666667789999999999999999998754689999999999999999999999986 799999998764


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCc---------cc------------------cHHHHHHHHhcccCCeEEEEeccc
Q 029414           91 LDQLLKYSENEGSFDYAFVDADK---------DN------------------YCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~~---------~~------------------~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      .....    ..++||.|++|++.         ++                  ...+++.++++++ ||.|++..+.
T Consensus       166 ~~~~~----~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs  236 (309)
T 2b9e_A          166 SPSDP----RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS  236 (309)
T ss_dssp             CTTCG----GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred             Ccccc----ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence            32110    01579999998641         01                  0235677777787 9999987554

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.51  E-value=7.4e-14  Score=105.60  Aligned_cols=103  Identities=17%  Similarity=0.165  Sum_probs=82.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH--HHHhhcCCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSENEG  102 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~  102 (194)
                      .++.+|||+|||+|..+..++...++.++++++|+++.+++.+.++....   .+++++.+|+.+..  +..      .+
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~------~~  146 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRML------IA  146 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGG------CC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhccc------CC
Confidence            35679999999999999999998644689999999999888887777665   48999999987632  211      46


Q ss_pred             ceeEEEEeCCccc-cHHHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +||+|+++....+ ...+++.+.+.|+|||.+++.
T Consensus       147 ~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          147 MVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             CEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEE
Confidence            8999999876332 244578899999999999994

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.51  E-value=4.8e-14  Score=106.50  Aligned_cols=104  Identities=16%  Similarity=0.079  Sum_probs=82.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...+ .++|+++|+++++++.++++....   +++.++.+|+.+......    ..++|
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~----~~~~~  144 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYAN----IVEKV  144 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTT----TSCCE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccc----cCccE
Confidence            3567999999999999999999876 689999999999999999887544   489999999865211010    02679


Q ss_pred             eEEEEeCCc-cccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADK-DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~-~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+|+.+... .....+++.+.+.|+|||.+++.
T Consensus       145 D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            999977542 23366799999999999999995

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.50  E-value=3.2e-13  Score=107.24  Aligned_cols=106  Identities=16%  Similarity=0.212  Sum_probs=88.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...+ +.+++++|++ .+++.+++++...++.+++++..+|..+.  .+      .+.|
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~------~~~~  233 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--DY------GNDY  233 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--CC------CSCE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--CC------CCCC
Confidence            5668999999999999999999986 7899999999 99999999999888877899999998653  11      2459


Q ss_pred             eEEEEeCCc-----cccHHHHHHHHhcccCCeEEEEecccc
Q 029414          105 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       105 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      |+|++....     ++...+++.+.+.|+|||.+++.+...
T Consensus       234 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  274 (335)
T 2r3s_A          234 DLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP  274 (335)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             cEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence            999986542     334688999999999999888876554

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.50  E-value=6.1e-14  Score=113.45  Aligned_cols=106  Identities=14%  Similarity=0.193  Sum_probs=88.0

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++++|||+|||+|..+..+++..  ..+|+++|.+ .+++.+++++...++.++++++++|..+..  +      .++
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~~  129 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS--L------PEK  129 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTT--CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC--C------SSC
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcC--CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC--c------CCc
Confidence            4567899999999999999999862  3599999999 999999999999999888999999997642  1      268


Q ss_pred             eeEEEEeCC------ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          104 FDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       104 fD~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ||+|+++..      ......+++.+.+.|+|||+++++....
T Consensus       130 ~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~  172 (376)
T 3r0q_C          130 VDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARM  172 (376)
T ss_dssp             EEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEE
T ss_pred             ceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCeE
Confidence            999999652      1345668888899999999999865543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.50  E-value=8e-14  Score=100.17  Aligned_cols=100  Identities=11%  Similarity=0.060  Sum_probs=81.9

Q ss_pred             HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           23 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ...++.+|||+|||+|..+..++...   .+++++|+++.+++.++++      .+++++..+|    .+ +     ..+
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d----~~-~-----~~~   74 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK------FDSVITLSDP----KE-I-----PDN   74 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH------CTTSEEESSG----GG-S-----CTT
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC----CC-C-----CCC
Confidence            45567799999999999999999864   3999999999999999988      2389999988    11 1     247


Q ss_pred             ceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414          103 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus       103 ~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      +||+|++...   ..+...+++.+.+.|+|||.+++.+....
T Consensus        75 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  116 (170)
T 3i9f_A           75 SVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE  116 (170)
T ss_dssp             CEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             ceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence            8999998865   34667889999999999999999765443

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.50  E-value=3.9e-13  Score=107.55  Aligned_cols=108  Identities=16%  Similarity=0.127  Sum_probs=90.6

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      +.+|||+|||+|..+..+++.++ +.+++++|+ +..++.+++++...++.++++++.+|..+..+..      .++||+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~D~  251 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE------GGAADV  251 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT------TCCEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC------CCCccE
Confidence            78999999999999999999987 789999999 8899999999999888778999999987642111      356999


Q ss_pred             EEEeCCc-----cccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          107 AFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       107 i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      |++....     +....+++.+.+.|+|||.+++.+...+.
T Consensus       252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (352)
T 3mcz_A          252 VMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND  292 (352)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            9987652     23467899999999999999998766543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.50  E-value=1e-13  Score=103.93  Aligned_cols=102  Identities=15%  Similarity=0.179  Sum_probs=84.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..++...+   +++++|+++++++.+++++...+  .+++++.+|..+..  +     ..++||
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--~-----~~~~~D  105 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLS--F-----EDKTFD  105 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCC--S-----CTTCEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCC--C-----CCCcEE
Confidence            467999999999999999998743   99999999999999999998776  48999999986531  1     136899


Q ss_pred             EEEEeCC--c---cccHHHHHHHHhcccCCeEEEEeccc
Q 029414          106 YAFVDAD--K---DNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       106 ~i~id~~--~---~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +|++...  .   .+...+++.+.+.|+|||.+++.+..
T Consensus       106 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          106 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            9998765  2   34567889999999999999987554

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.50  E-value=1.9e-13  Score=109.00  Aligned_cols=117  Identities=17%  Similarity=0.144  Sum_probs=92.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      +.........+.......++.+|||+|||+|..++. |.  + ..+|+++|+++.+++.++++++.+++.++++++.+|+
T Consensus       177 ~~~~~~~~er~~i~~~~~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~  252 (336)
T 2yx1_A          177 YFSPRLGGERARIMKKVSLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDV  252 (336)
T ss_dssp             CCCGGGHHHHHHHHHHCCTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCG
T ss_pred             ccCCccHHHHHHHHHhcCCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCh
Confidence            344443444443333334778999999999999999 87  2 6799999999999999999999999877899999999


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      .+..          ++||+|++|.+. ....+++.+.++|+|||++++....
T Consensus       253 ~~~~----------~~fD~Vi~dpP~-~~~~~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          253 REVD----------VKGNRVIMNLPK-FAHKFIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             GGCC----------CCEEEEEECCTT-TGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHhc----------CCCcEEEECCcH-hHHHHHHHHHHHcCCCCEEEEEEee
Confidence            7642          579999998653 3347888999999999999986544

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.50  E-value=2.9e-13  Score=109.26  Aligned_cols=128  Identities=13%  Similarity=0.089  Sum_probs=95.0

Q ss_pred             ccccCCCCHHHHHHHHHHHH-Hc--CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcE
Q 029414            4 LRAMMGTAPDAGQLMAMLLR-LV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI   80 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~-~~--~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v   80 (194)
                      ...++++++...+.+...+. ..  .+.+|||+|||+|..++.+|..   ..+|+++|+++++++.|+++++.++++ ++
T Consensus       188 ~~~F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v  263 (369)
T 3bt7_A          188 ENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHID-NV  263 (369)
T ss_dssp             TTSCCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCC-SE
T ss_pred             CCCeecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCC-ce
Confidence            34678888887666654443 22  3578999999999999999985   459999999999999999999999985 89


Q ss_pred             EEEecchHHHHHHHhhcCC---------CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414           81 NFIESEALSVLDQLLKYSE---------NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        81 ~~~~~d~~~~~~~~~~~~~---------~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +++.+|+.+.++.+.....         ...+||+|++|++....   .+.+.+.|+++|.|++...
T Consensus       264 ~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          264 QIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL---DSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             EEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC---CHHHHHHHTTSSEEEEEES
T ss_pred             EEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcccc---HHHHHHHHhCCCEEEEEEC
Confidence            9999999988766521100         00279999999875432   2345566668888877543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.50  E-value=8.5e-14  Score=106.60  Aligned_cols=100  Identities=22%  Similarity=0.246  Sum_probs=82.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++ . +..+++++..+|+.+. + +     ..++|
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~-~-~-----~~~~f  105 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAI-P-L-----PDESV  105 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSC-C-S-----CTTCE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccC-C-C-----CCCCe
Confidence            46789999999999999999985   569999999999999999987 2 2235899999998653 1 1     14689


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+|++...   ..+...+++.+.+.|+|||.+++.
T Consensus       106 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          106 HGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            99998765   335678899999999999999986

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.49  E-value=1e-13  Score=110.75  Aligned_cols=102  Identities=17%  Similarity=0.186  Sum_probs=84.2

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++++|||+|||+|..+..+++. + ..+|+++|+++ +++.|+++++..++.++++++.+|+.+.  .+     ..++
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~-----~~~~  131 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV--HL-----PVEK  131 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS--CC-----SCSC
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh--cC-----CCCc
Confidence            457789999999999999999986 2 46999999996 9999999999999877999999998764  11     1368


Q ss_pred             eeEEEEeCC------ccccHHHHHHHHhcccCCeEEEE
Q 029414          104 FDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       104 fD~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ||+|++...      ......+++.+.+.|+|||.++.
T Consensus       132 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip  169 (340)
T 2fyt_A          132 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  169 (340)
T ss_dssp             EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             EEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence            999998752      23456688888999999999984

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.49  E-value=1e-12  Score=106.00  Aligned_cols=106  Identities=11%  Similarity=0.131  Sum_probs=89.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      +..+|||+|||+|..+..+++.++ +.+++++|+ +..++.+++++...++.+++++..+|..+   .+      ...||
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~---~~------p~~~D  270 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE---TI------PDGAD  270 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT---CC------CSSCS
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC---CC------CCCce
Confidence            568999999999999999999987 889999999 99999999999999887899999999863   11      23799


Q ss_pred             EEEEeCCcc-----ccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          106 YAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       106 ~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      +|++.....     ....+++.+.+.|+|||.+++.+...+.
T Consensus       271 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  312 (369)
T 3gwz_A          271 VYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE  312 (369)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred             EEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            999876522     2346899999999999999998766543

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.49  E-value=1.6e-13  Score=106.88  Aligned_cols=106  Identities=12%  Similarity=0.112  Sum_probs=86.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++.. + ..+++++|+++.+++.+++++...+...+++++.+|..+....      ..++|
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~f  134 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD------LGKEF  134 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC------CSSCE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC------CCCCc
Confidence            46789999999999999998876 2 4699999999999999999999888766899999998664110      14689


Q ss_pred             eEEEEeCCc-------cccHHHHHHHHhcccCCeEEEEecc
Q 029414          105 DYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       105 D~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      |+|++....       .+...+++.+.+.|+|||.+++...
T Consensus       135 D~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  175 (298)
T 1ri5_A          135 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  175 (298)
T ss_dssp             EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            999988642       3456789999999999999998643

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.49  E-value=2.5e-13  Score=107.94  Aligned_cols=105  Identities=17%  Similarity=0.199  Sum_probs=85.5

Q ss_pred             HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ....++++|||+|||+|..+..+++. + ..+|+++|++ .+++.|++++...++.++++++.+|..+..  +     ..
T Consensus        34 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-----~~  103 (328)
T 1g6q_1           34 KDLFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH--L-----PF  103 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC--C-----SS
T ss_pred             HhhcCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc--C-----CC
Confidence            34567889999999999999999886 2 4699999999 599999999999998888999999987641  1     13


Q ss_pred             CceeEEEEeCC------ccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++||+|+++..      ......++..+.+.|+|||.++.+
T Consensus       104 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~  144 (328)
T 1g6q_1          104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             CcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence            68999998743      234567788888999999999853

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.49  E-value=1.2e-13  Score=104.57  Aligned_cols=110  Identities=15%  Similarity=0.136  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHc--CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414           14 AGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   91 (194)
Q Consensus        14 ~~~~l~~l~~~~--~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   91 (194)
                      ....+..++...  ++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...+.  ++++..+|..+..
T Consensus        23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~   97 (246)
T 1y8c_A           23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN   97 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCC
Confidence            344455555443  6789999999999999999986   46899999999999999999987764  7899999986531


Q ss_pred             HHHhhcCCCCCceeEEEEeC-C---c---cccHHHHHHHHhcccCCeEEEEe
Q 029414           92 DQLLKYSENEGSFDYAFVDA-D---K---DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~-~---~---~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                        +      .++||+|++.. .   .   .+...+++.+.+.|+|||.++++
T Consensus        98 --~------~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           98 --I------NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             --C------SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             --c------cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence              1      26899999976 3   2   45678899999999999999984

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.49  E-value=2.7e-14  Score=110.10  Aligned_cols=97  Identities=9%  Similarity=0.044  Sum_probs=80.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc--CC-CCcEEEEecchHHHHHHHhhcCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      .++++|||||||+|..+..+++. +  .+++++|+++.+++.|++++...  ++ .++++++.+|+.+.+          
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence            46789999999999999999987 3  79999999999999999876431  11 358999999986642          


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++||+|++|..  +...+++.+.+.|+|||++++.
T Consensus       138 ~~fD~Ii~d~~--dp~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          138 KKYDLIFCLQE--PDIHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             CCEEEEEESSC--CCHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhCCEEEECCC--ChHHHHHHHHHhcCCCcEEEEE
Confidence            47999999964  3345899999999999999995

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.49  E-value=7.9e-14  Score=105.78  Aligned_cols=98  Identities=15%  Similarity=0.187  Sum_probs=80.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++..   +.+++++|+++++++.++++         ++++.+|..+.+..+     ..++|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~-----~~~~f  102 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL-----PDKYL  102 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS-----CTTCB
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc-----CCCCe
Confidence            45689999999999999999986   45899999999999988765         688889988765443     24789


Q ss_pred             eEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          105 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       105 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      |+|++...     .++...+++.+.+.|+|||.+++....
T Consensus       103 D~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A          103 DGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             SEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             eEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            99998765     224578999999999999999996543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.49  E-value=4.7e-14  Score=107.90  Aligned_cols=98  Identities=18%  Similarity=0.143  Sum_probs=83.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...+ +.+++++|+++.+++.++++      .+++++..+|+.+.. .       .++|
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~-~-------~~~f   96 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK-P-------AQKA   96 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC-C-------SSCE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC-c-------cCCc
Confidence            4567999999999999999999875 78999999999999999887      237899999986642 1       4789


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEec
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |+|++...   ..+...+++.+.+.|+|||.+++..
T Consensus        97 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A           97 DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             EEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence            99999865   3467888999999999999999964

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.48  E-value=4.9e-13  Score=106.25  Aligned_cols=106  Identities=12%  Similarity=0.071  Sum_probs=89.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      +..+|||+|||+|..+..+++.++ +.+++++|+ +.+++.+++++...++.+++++..+|..+   .+      ..+||
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~------p~~~D  237 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD---PL------PAGAG  237 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS---CC------CCSCS
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC---CC------CCCCc
Confidence            357999999999999999999987 889999999 99999999999998887899999999863   11      23799


Q ss_pred             EEEEeCCc-----cccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          106 YAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       106 ~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      +|++....     +....+++++.+.|+|||.+++.+...+.
T Consensus       238 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  279 (332)
T 3i53_A          238 GYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD  279 (332)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred             EEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence            99987652     22467899999999999999998776544

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.48  E-value=7.2e-14  Score=104.43  Aligned_cols=108  Identities=19%  Similarity=0.188  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414           15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      ..++..+. ..++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++.     .+++++.+|+.+.. . 
T Consensus        35 ~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~-~-  103 (220)
T 3hnr_A           35 EDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFE-V-  103 (220)
T ss_dssp             HHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCC-C-
T ss_pred             HHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcC-C-
Confidence            34454444 447789999999999999999986   5699999999999999998864     47899999986631 1 


Q ss_pred             hhcCCCCCceeEEEEeCCc---ccc--HHHHHHHHhcccCCeEEEEeccc
Q 029414           95 LKYSENEGSFDYAFVDADK---DNY--CNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~---~~~--~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                            .++||+|++....   .+.  ..+++.+.+.|+|||.+++.+..
T Consensus       104 ------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  147 (220)
T 3hnr_A          104 ------PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI  147 (220)
T ss_dssp             ------CSCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             ------CCCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence                  2689999998652   222  23899999999999999997644

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.48  E-value=5.9e-13  Score=96.05  Aligned_cols=106  Identities=16%  Similarity=0.175  Sum_probs=82.7

Q ss_pred             CCCCHHHHHHHHHHHHH--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            8 MGTAPDAGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +...++...++..+ ..  .++.+|||+|||+|..+..++..   . +++++|+++.+++.          .++++++++
T Consensus         4 ~~P~~~~~~l~~~l-~~~~~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~----------~~~~~~~~~   68 (170)
T 3q87_B            4 YEPGEDTYTLMDAL-EREGLEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES----------HRGGNLVRA   68 (170)
T ss_dssp             CCCCHHHHHHHHHH-HHHTCCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT----------CSSSCEEEC
T ss_pred             cCcCccHHHHHHHH-HhhcCCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc----------ccCCeEEEC
Confidence            45667777777774 44  56789999999999999999985   3 99999999998886          347899999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCcc------------ccHHHHHHHHhcccCCeEEEEec
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKD------------NYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~------------~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |+.+..+        .++||+|+++....            .....++.+.+.+ |||.+++..
T Consensus        69 d~~~~~~--------~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           69 DLLCSIN--------QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             STTTTBC--------GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             Chhhhcc--------cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence            9876321        26899999986522            2356778888888 999999854

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.48  E-value=1.3e-13  Score=103.06  Aligned_cols=103  Identities=13%  Similarity=0.094  Sum_probs=78.4

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHH----HHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII----KKAGVDHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~----~~~~~~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      ..++.+|||+|||+|..+..++...+ +.+|+++|+++.+++.+.++.    ...+++ +++++++|+.+. +.      
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l-~~------   95 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERL-PP------   95 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTC-CS------
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhC-CC------
Confidence            45678999999999999999999876 889999999999888643333    334544 899999998763 21      


Q ss_pred             CCCceeEEEEeCC--------ccccHHHHHHHHhcccCCeEEEEe
Q 029414          100 NEGSFDYAFVDAD--------KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       100 ~~~~fD~i~id~~--------~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+. |.+++...        ..+...+++.+.+.|||||.+++.
T Consensus        96 ~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           96 LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            1234 77775542        123368899999999999999984

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.48  E-value=1.4e-12  Score=104.69  Aligned_cols=106  Identities=12%  Similarity=0.061  Sum_probs=88.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..+++..+ +.+++++|+ +.+++.+++++...+++++++++.+|..+.  .       .+.+
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~-------~~~~  257 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--S-------YPEA  257 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS--C-------CCCC
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC--C-------CCCC
Confidence            4568999999999999999999986 789999999 999999999999988887899999998663  1       1345


Q ss_pred             eEEEEeCCcc-----ccHHHHHHHHhcccCCeEEEEeccccc
Q 029414          105 DYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus       105 D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      |+|++.....     ....+++.+.+.|+|||.+++.+...+
T Consensus       258 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~  299 (359)
T 1x19_A          258 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID  299 (359)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred             CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence            9999876522     256789999999999999988765543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.47  E-value=1.2e-13  Score=103.82  Aligned_cols=104  Identities=22%  Similarity=0.290  Sum_probs=84.7

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC----CcEEEEecchHHHHHHHhhcCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD----HKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      .++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...++.    .++++..+|..+..  +     .
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~-----~   98 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS--F-----H   98 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC--S-----C
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC--C-----C
Confidence            46789999999999999999986   569999999999999999998877652    36899999986531  1     1


Q ss_pred             CCceeEEEEeCCc---cccH---HHHHHHHhcccCCeEEEEecc
Q 029414          101 EGSFDYAFVDADK---DNYC---NYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       101 ~~~fD~i~id~~~---~~~~---~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .++||+|++....   .+..   .+++.+.+.|+|||.+++.+.
T Consensus        99 ~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A           99 DSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             TTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            4789999988652   2233   789999999999999999754

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.47  E-value=1e-12  Score=104.45  Aligned_cols=103  Identities=8%  Similarity=0.039  Sum_probs=87.3

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  107 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i  107 (194)
                      .+|||+|||+|..+..++...+ +.+++++|+ +.+++.+++++...++.++++++.+|..+.   +      .++||+|
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~~~D~v  237 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE---V------PSNGDIY  237 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC---C------CSSCSEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC---C------CCCCCEE
Confidence            7999999999999999999886 789999999 999999999998877767899999998651   2      3579999


Q ss_pred             EEeCCcc-----ccHHHHHHHHhcccCCeEEEEeccccc
Q 029414          108 FVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus       108 ~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      ++.....     ....+++.+.+.|+|||.+++.+...+
T Consensus       238 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  276 (334)
T 2ip2_A          238 LLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS  276 (334)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             EEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            9876532     234789999999999999999876543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.47  E-value=2.1e-13  Score=109.28  Aligned_cols=102  Identities=16%  Similarity=0.168  Sum_probs=84.4

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++++|||+|||+|..+..+++. + ..+|+++|.++ +++.++++++..++.++++++.+|..+.  .+      .++
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~--~~------~~~  116 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV--SL------PEQ  116 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SSC
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhC--CC------CCc
Confidence            346789999999999999999885 2 56999999996 8899999999999877999999998664  11      367


Q ss_pred             eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ||+|++...     .+.....+..+.+.|+|||++++.
T Consensus       117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          117 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             EEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             eeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            999999754     244567788889999999999864

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.47  E-value=3.5e-14  Score=108.51  Aligned_cols=118  Identities=13%  Similarity=0.113  Sum_probs=86.0

Q ss_pred             HHHHHHHHHc---CCCeEEEEcccccHHHHHHHhh--CCCCCEEEEEeCCcchHHhHHHHHHHc---CCCCc--------
Q 029414           16 QLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALT--IPEDGQITAIDVNRETYEIGLPIIKKA---GVDHK--------   79 (194)
Q Consensus        16 ~~l~~l~~~~---~~~~vLeiG~G~G~~~~~la~~--~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~~~~--------   79 (194)
                      .++..++...   ++.+|||+|||+|..+..++..  .+ ..+|+++|+++.+++.|++++...   ++.++        
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~-~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~  116 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRS-LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQS  116 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGG-EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccC-CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhh
Confidence            4555555432   4569999999999999999987  43 579999999999999999988765   43322        


Q ss_pred             -----------------EE-------------EEecchHHHHHHHhhcCCCCCceeEEEEeCCc------------cccH
Q 029414           80 -----------------IN-------------FIESEALSVLDQLLKYSENEGSFDYAFVDADK------------DNYC  117 (194)
Q Consensus        80 -----------------v~-------------~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~------------~~~~  117 (194)
                                       ++             +.++|..+..+.....  ...+||+|+++.+.            ..+.
T Consensus       117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~  194 (250)
T 1o9g_A          117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVL--AGSAPDVVLTDLPYGERTHWEGQVPGQPVA  194 (250)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH--TTCCCSEEEEECCGGGSSSSSSCCCHHHHH
T ss_pred             hhcccccchhhhhhhhhhhhhccccccccccceeeccccccccccccc--CCCCceEEEeCCCeeccccccccccccHHH
Confidence                             56             8889886643210000  02489999998641            2234


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 029414          118 NYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       118 ~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+++.+.+.|+|||++++.
T Consensus       195 ~~l~~~~~~LkpgG~l~~~  213 (250)
T 1o9g_A          195 GLLRSLASALPAHAVIAVT  213 (250)
T ss_dssp             HHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHhcCCCcEEEEe
Confidence            7889999999999999984

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.46  E-value=4.4e-14  Score=106.42  Aligned_cols=92  Identities=13%  Similarity=0.063  Sum_probs=76.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC-CCc
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN-EGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~-~~~  103 (194)
                      .++.+|||+|||+|..+..++..   +.+|+++|+++.+++.++++      .++++++++|..+.++.      . .++
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~------~~~~~  111 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPA------GLGAP  111 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCT------TCCCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCC------cCCCC
Confidence            46789999999999999999987   56999999999999999988      23799999998543221      1 368


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEE
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV  134 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv  134 (194)
                      ||+|++..   +...+++.+.+.|+|||.++
T Consensus       112 fD~v~~~~---~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          112 FGLIVSRR---GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EEEEEEES---CCSGGGGGHHHHEEEEEEEE
T ss_pred             EEEEEeCC---CHHHHHHHHHHHcCCCcEEE
Confidence            99999973   55567888999999999999

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.46  E-value=1.2e-13  Score=107.20  Aligned_cols=101  Identities=18%  Similarity=0.138  Sum_probs=82.9

Q ss_pred             HHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           21 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        21 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      .+...++.+|||+|||+|..+..++.   ++.+++++|+++.+++.+++++      +++++..+|+.+. + +      
T Consensus        52 ~l~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~------  114 (279)
T 3ccf_A           52 LLNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNF-R-V------  114 (279)
T ss_dssp             HHCCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTC-C-C------
T ss_pred             HhCCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhC-C-c------
Confidence            33345678999999999999999998   3789999999999999998875      3788999998653 1 1      


Q ss_pred             CCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          101 EGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       101 ~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .++||+|++...   ..+...+++.+.+.|+|||.+++...
T Consensus       115 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          115 DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEec
Confidence            368999998865   35677899999999999999998643

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.46  E-value=1.2e-13  Score=104.61  Aligned_cols=108  Identities=14%  Similarity=0.209  Sum_probs=85.2

Q ss_pred             HHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhh
Q 029414           17 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   96 (194)
Q Consensus        17 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~   96 (194)
                      .+..++...++.+|||+|||+|..+..++...  ..+++++|+++.+++.++++...    .++++..+|..+..  +  
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~--~--  103 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHG--ASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLH--L--  103 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCC--C--
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHCC--CCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhcc--C--
Confidence            34444444567899999999999999999862  23999999999999999887532    37999999986631  1  


Q ss_pred             cCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEec
Q 029414           97 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                         ..++||+|++...   ..+...+++.+.+.|+|||.+++..
T Consensus       104 ---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          104 ---PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             ---CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence               1468999998865   3456788999999999999999864

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.45  E-value=4.9e-14  Score=110.40  Aligned_cols=104  Identities=11%  Similarity=0.127  Sum_probs=84.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC--CcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++...+..  .+++++++|..+..  +      .++
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~--~------~~~  150 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA--L------DKR  150 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC--C------SCC
T ss_pred             CCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC--c------CCC
Confidence            4469999999999999999986   568999999999999999999877642  58999999987631  1      478


Q ss_pred             eeEEEEeCC------ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          104 FDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       104 fD~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ||+|++...      ..+...+++.+.+.|+|||.+++.....
T Consensus       151 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  193 (299)
T 3g2m_A          151 FGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS  193 (299)
T ss_dssp             EEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence            999987522      2245788999999999999999975443

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.45  E-value=5.6e-14  Score=107.55  Aligned_cols=121  Identities=12%  Similarity=0.163  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHc-----CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414           12 PDAGQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus        12 ~~~~~~l~~l~~~~-----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      +....++..++...     ++.+|||+|||+|..+..++...+ +.+++++|+++.+++.|++++...+++++++++++|
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  124 (254)
T 2h00_A           46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP  124 (254)
T ss_dssp             HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             HHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcc
Confidence            55666666666432     456999999999999999988765 689999999999999999999999987779999999


Q ss_pred             hHH-HHHHHhhcCCCCCceeEEEEeCCccc------------------cHHHHHHHHhcccCCeEEEE
Q 029414           87 ALS-VLDQLLKYSENEGSFDYAFVDADKDN------------------YCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        87 ~~~-~~~~~~~~~~~~~~fD~i~id~~~~~------------------~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +.+ ....+...  ..++||+|+++.+...                  ...++..+.++|+|||.+.+
T Consensus       125 ~~~~~~~~~~~~--~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~  190 (254)
T 2h00_A          125 QKTLLMDALKEE--SEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF  190 (254)
T ss_dssp             TTCSSTTTSTTC--CSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred             hhhhhhhhhhcc--cCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence            765 22222100  0157999999854211                  11234556677788777655

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=9.3e-14  Score=106.81  Aligned_cols=110  Identities=14%  Similarity=0.078  Sum_probs=85.6

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      .+...+.+...+...++.+|||+|||+|..+..++.   ++.+++++|+++.+++.++++.       +++++.+|+.+.
T Consensus        19 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~   88 (261)
T 3ege_A           19 DIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENL   88 (261)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSC
T ss_pred             cHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhC
Confidence            344455555555456788999999999999999997   3789999999998888766542       799999998653


Q ss_pred             HHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414           91 LDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                       + +     ..++||+|++...   ..+...+++.+.+.|| ||.+++.+.
T Consensus        89 -~-~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A           89 -A-L-----PDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             -C-S-----CTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             -C-C-----CCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence             1 1     1478999999875   4677889999999999 997776544

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.45  E-value=2e-13  Score=104.86  Aligned_cols=105  Identities=14%  Similarity=0.108  Sum_probs=82.8

Q ss_pred             HHHHHHHHHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414           16 QLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        16 ~~l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      .++..+.... ++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++.      +++++.+|..+...  
T Consensus        39 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~--  107 (263)
T 3pfg_A           39 DLAALVRRHSPKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL--  107 (263)
T ss_dssp             HHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC--
T ss_pred             HHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc--
Confidence            3334444333 4589999999999999999986   4589999999999999998742      78999999866311  


Q ss_pred             hhcCCCCCceeEEEEeC-C---c---cccHHHHHHHHhcccCCeEEEEec
Q 029414           95 LKYSENEGSFDYAFVDA-D---K---DNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~-~---~---~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                            .++||+|++.. .   .   .+...+++.+.+.|+|||.++++.
T Consensus       108 ------~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          108 ------GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             ------SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             ------cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence                  37899999986 3   1   355678999999999999999974

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.45  E-value=1.5e-13  Score=102.20  Aligned_cols=97  Identities=16%  Similarity=0.111  Sum_probs=79.7

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++       ++.+..+|..+..  .      .++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--~------~~~  102 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--A------IDA  102 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC--C------CSC
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC--C------CCc
Confidence            345789999999999999999986   569999999999999999887       4566778876542  1      578


Q ss_pred             eeEEEEeCCc-----cccHHHHHHHHhcccCCeEEEEecc
Q 029414          104 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       104 fD~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ||+|++....     .+...+++.+.+.|+|||++++...
T Consensus       103 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  142 (211)
T 3e23_A          103 YDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYK  142 (211)
T ss_dssp             EEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            9999998652     2566889999999999999999743

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.44  E-value=1.2e-12  Score=107.44  Aligned_cols=117  Identities=19%  Similarity=0.164  Sum_probs=92.4

Q ss_pred             cccCCCCHHHHHHHHHHH-HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414            5 RAMMGTAPDAGQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   83 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~-~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~   83 (194)
                      ..+++.++...+.|...+ ...++.+|||+|||+|..++.+|..   ..+|+++|+++++++.|++++..+++.  ++++
T Consensus       268 ~~F~q~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~  342 (425)
T 2jjq_A          268 NSFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD--AEFE  342 (425)
T ss_dssp             TSCCCSBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEE
T ss_pred             ccccccCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEE
Confidence            457777777666554443 3556789999999999999999986   459999999999999999999988875  9999


Q ss_pred             ecchHHHHHHHhhcCCCCCceeEEEEeCCccccH-HHHHHHHhcccCCeEEEEe
Q 029414           84 ESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        84 ~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+|+.+.+         ..+||+|++|.+..... .+++.+ ..|+|+|++++.
T Consensus       343 ~~d~~~~~---------~~~fD~Vv~dPPr~g~~~~~~~~l-~~l~p~givyvs  386 (425)
T 2jjq_A          343 VASDREVS---------VKGFDTVIVDPPRAGLHPRLVKRL-NREKPGVIVYVS  386 (425)
T ss_dssp             ECCTTTCC---------CTTCSEEEECCCTTCSCHHHHHHH-HHHCCSEEEEEE
T ss_pred             ECChHHcC---------ccCCCEEEEcCCccchHHHHHHHH-HhcCCCcEEEEE
Confidence            99987642         13799999998754433 355555 569999999986

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.44  E-value=3.4e-13  Score=108.96  Aligned_cols=103  Identities=14%  Similarity=0.151  Sum_probs=84.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++++|||+| |+|..+..++...+ ..+|+++|+++.+++.++++++..++. +++++.+|+.+.++..     ..++||
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~-----~~~~fD  243 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDY-----ALHKFD  243 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTT-----TSSCBS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhh-----ccCCcc
Confidence            478999999 99999999988754 679999999999999999999999887 8999999987633210     035899


Q ss_pred             EEEEeCCc--cccHHHHHHHHhcccCCe-EEEEe
Q 029414          106 YAFVDADK--DNYCNYHERLMKLLKVGG-IAVYD  136 (194)
Q Consensus       106 ~i~id~~~--~~~~~~~~~~~~~L~~gG-~lv~~  136 (194)
                      +|+++.+.  .....+++.+.+.|+||| ++++.
T Consensus       244 ~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          244 TFITDPPETLEAIRAFVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEE
T ss_pred             EEEECCCCchHHHHHHHHHHHHHcccCCeEEEEE
Confidence            99999752  234678899999999999 43553

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.44  E-value=1.7e-13  Score=104.41  Aligned_cols=101  Identities=9%  Similarity=0.146  Sum_probs=83.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..++...  ..+++++|+++.+++.+++++...   .+++++.+|..+. + +     ..++||
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~-~-----~~~~fD  160 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA-T-L-----PPNTYD  160 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC-C-C-----CSSCEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHC-C-C-----CCCCeE
Confidence            56899999999999999998764  458999999999999999987644   4899999998663 1 1     146899


Q ss_pred             EEEEeCCc-----cccHHHHHHHHhcccCCeEEEEecc
Q 029414          106 YAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       106 ~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +|++....     .+...+++.+.+.|+|||.+++.+.
T Consensus       161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            99988652     3457889999999999999999764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.44  E-value=4.2e-13  Score=108.14  Aligned_cols=104  Identities=14%  Similarity=0.252  Sum_probs=83.9

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++++|||||||+|..++..|++.  ..+|+++|.++ +++.|++.++.+++.++|++++++..+.  .+      .++
T Consensus        81 ~~~~k~VLDvG~GtGiLs~~Aa~aG--A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~--~l------pe~  149 (376)
T 4hc4_A           81 ALRGKTVLDVGAGTGILSIFCAQAG--ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV--EL------PEQ  149 (376)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SSC
T ss_pred             hcCCCEEEEeCCCccHHHHHHHHhC--CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee--cC------Ccc
Confidence            4478999999999999998888763  35899999986 8899999999999998999999998764  12      468


Q ss_pred             eeEEEEeCC------ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          104 FDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       104 fD~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ||+|+....      ......++....++|+|||+++.+.+
T Consensus       150 ~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~a  190 (376)
T 4hc4_A          150 VDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASA  190 (376)
T ss_dssp             EEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             ccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccc
Confidence            999987532      23455667777799999999986544

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.44  E-value=5.7e-13  Score=100.80  Aligned_cols=107  Identities=23%  Similarity=0.318  Sum_probs=84.8

Q ss_pred             HHHHHHHHHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414           16 QLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        16 ~~l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      .++..+.... ++.+|||+|||+|..+..++..    .+++++|+++.+++.+++++...+  .++++..+|..+..  .
T Consensus        22 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--~   93 (243)
T 3d2l_A           22 EWVAWVLEQVEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELE--L   93 (243)
T ss_dssp             HHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCC--C
T ss_pred             HHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcC--C
Confidence            3444444433 4679999999999999999875    599999999999999999998766  37899999986531  1


Q ss_pred             hhcCCCCCceeEEEEeCC-------ccccHHHHHHHHhcccCCeEEEEe
Q 029414           95 LKYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                            .++||+|++...       ..+...+++.+.+.|+|||.++++
T Consensus        94 ------~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           94 ------PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             ------SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                  368999998652       144567889999999999999984

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.43  E-value=5.6e-13  Score=104.78  Aligned_cols=106  Identities=18%  Similarity=0.194  Sum_probs=76.7

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC-----cEEEEecchH-----HHHHHHhh
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEAL-----SVLDQLLK   96 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~-----~~~~~~~~   96 (194)
                      +.+|||+|||+|..+..++..  ...+|+++|+++.+++.|+++....+...     ++++.+.|..     +.++... 
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~-  125 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF-  125 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC-
T ss_pred             CCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc-
Confidence            579999999999766555543  24699999999999999999987765321     2567676652     1122111 


Q ss_pred             cCCCCCceeEEEEeCCc------cccHHHHHHHHhcccCCeEEEEecc
Q 029414           97 YSENEGSFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                         ..++||+|++....      ++...+++.+.++|||||++++...
T Consensus       126 ---~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          126 ---YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             ---CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence               13689999876431      3457899999999999999998654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=5.2e-13  Score=101.45  Aligned_cols=104  Identities=13%  Similarity=0.077  Sum_probs=81.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH--HhhcCCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ--LLKYSENEG  102 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~~~~  102 (194)
                      .++.+|||+|||+|..+..++...+   +|+++|+++.+++.+++++   . ..+++++++|..+....  +..    ..
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~---~-~~~~~~~~~d~~~~~~~~~~~~----~~  123 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKEN---T-AANISYRLLDGLVPEQAAQIHS----EI  123 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHS---C-CTTEEEEECCTTCHHHHHHHHH----HH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhC---c-ccCceEEECccccccccccccc----cc
Confidence            4567999999999999999999754   8999999999999999876   2 23899999998764222  100    13


Q ss_pred             ceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          103 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       103 ~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      .||+|++...     ..+...+++.+.+.|+|||.+++.+..
T Consensus       124 ~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          124 GDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             CSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             CccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            5999998864     235678999999999999998776543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.43  E-value=3.2e-13  Score=102.19  Aligned_cols=100  Identities=14%  Similarity=0.200  Sum_probs=82.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++..   +.+++++|+++.+++.++++.    ...+++++.+|..+..  +     ..++|
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~--~-----~~~~f  117 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLP--F-----ENEQF  117 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCS--S-----CTTCE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCC--C-----CCCCc
Confidence            35779999999999999999986   569999999999999988764    2358999999986531  1     14789


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      |+|++...   ..+...+++.+.+.|+|||.+++...
T Consensus       118 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          118 EAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             EEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence            99998765   45667889999999999999999753

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.42  E-value=6.1e-13  Score=107.21  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=86.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...+ +.+++++|+ +.+++.+++++...++.++++++.+|..+.   +      ...|
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~~~  249 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP---L------PVTA  249 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------SCCE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc---C------CCCC
Confidence            3568999999999999999999986 789999999 999999999999988877999999998652   1      2349


Q ss_pred             eEEEEeCCcc-----ccHHHHHHHHhcccCCeEEEEecc
Q 029414          105 DYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       105 D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      |+|++.....     ....+++.+.+.|+|||.+++.+.
T Consensus       250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          250 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            9999876522     224789999999999999988665

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.42  E-value=9.7e-12  Score=92.02  Aligned_cols=112  Identities=11%  Similarity=0.104  Sum_probs=86.1

Q ss_pred             CCCHHHHHHHHHHHH---HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            9 GTAPDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      .+.+.....+...+.   ..++.+|||+|||+|..+..++...  ..+++++|+++.+++.+++++...++  +++++++
T Consensus        29 ~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~  104 (207)
T 1wy7_A           29 RTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIG  104 (207)
T ss_dssp             CCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEES
T ss_pred             cCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEEC
Confidence            345555555554444   2356899999999999999999862  35899999999999999999988876  7999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCc-----cccHHHHHHHHhcccCCeEEEEe
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+.+.          .++||+|+++.+.     .....+++.+.+.+  |+++++.
T Consensus       105 d~~~~----------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          105 DVSEF----------NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             CGGGC----------CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             chHHc----------CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            98763          2589999999761     33457788888887  6665553

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.42  E-value=2.6e-12  Score=103.76  Aligned_cols=115  Identities=22%  Similarity=0.201  Sum_probs=89.7

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      .+...+.|..++ ..++.+|||+|||+|..++.+|...+ .++++++|+++.+++.|++++..+++.+++++.++|+.+.
T Consensus       203 ~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~  280 (373)
T 3tm4_A          203 KASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL  280 (373)
T ss_dssp             CHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG
T ss_pred             cHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence            455566666666 66778999999999999999998754 5699999999999999999999999877899999999775


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCcc-----------ccHHHHHHHHhcccCCeEEEE
Q 029414           91 LDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ...       .++||+|+++.+..           -+..+++.+.+.| .|+.+++
T Consensus       281 ~~~-------~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i  328 (373)
T 3tm4_A          281 SQY-------VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI  328 (373)
T ss_dssp             GGT-------CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE
T ss_pred             Ccc-------cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE
Confidence            221       36899999986511           1356777788877 3333333

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.42  E-value=6e-13  Score=106.77  Aligned_cols=104  Identities=15%  Similarity=0.195  Sum_probs=87.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...+ +.+++++|+ +.+++.+++++...++.++++++.+|..+.   +      ...|
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~~~  250 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP---L------PRKA  250 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------SSCE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC---C------CCCc
Confidence            3567999999999999999999886 789999999 999999999999988877999999998652   1      2359


Q ss_pred             eEEEEeCCcc-----ccHHHHHHHHhcccCCeEEEEeccc
Q 029414          105 DYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       105 D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      |+|++.....     ....+++.+.+.|+|||.+++.+..
T Consensus       251 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          251 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            9999876522     2257899999999999999987665

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.41  E-value=1.4e-12  Score=101.88  Aligned_cols=108  Identities=12%  Similarity=0.117  Sum_probs=77.6

Q ss_pred             CCCeEEEEcccccHHHHHH----HhhCCCCCEE--EEEeCCcchHHhHHHHHHHc-CCCCcEE--EEecchHHHHHHHhh
Q 029414           26 NAKKTIEIGVFTGYSLLLT----ALTIPEDGQI--TAIDVNRETYEIGLPIIKKA-GVDHKIN--FIESEALSVLDQLLK   96 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~l----a~~~~~~~~v--~~iD~~~~~~~~a~~~~~~~-~~~~~v~--~~~~d~~~~~~~~~~   96 (194)
                      ++.+|||||||+|..+..+    +...+ ..++  +++|+++++++.+++++... +++ +++  +..+++.+....+..
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~-~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYP-GVCINNEVVEPSAEQIAKYKELVAKTSNLE-NVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHST-TCEEEEEEECSCHHHHHHHHHHHHTCSSCT-TEEEEEECSCHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCC-CceeeEEEEeCCHHHHHHHHHHHHhccCCC-cceEEEEecchhhhhhhhcc
Confidence            4568999999999876543    33333 5654  99999999999999998764 333 554  456666554322100


Q ss_pred             cCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414           97 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                       ....++||+|++...   .++....++.+.++|||||.+++.
T Consensus       130 -~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          130 -KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             -TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEE
Confidence             001478999998865   456788999999999999999985

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.41  E-value=4.3e-13  Score=103.13  Aligned_cols=104  Identities=15%  Similarity=0.195  Sum_probs=75.2

Q ss_pred             HHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414           20 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        20 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      ..+...++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++....  -...+...+.. ....+     
T Consensus        39 ~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~~--v~~~~~~~~~~-~~~~~-----  107 (261)
T 3iv6_A           39 FLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADRC--VTIDLLDITAE-IPKEL-----  107 (261)
T ss_dssp             HTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSSC--CEEEECCTTSC-CCGGG-----
T ss_pred             HhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhcc--ceeeeeecccc-ccccc-----
Confidence            3334556789999999999999999986   5699999999999999999875441  12233222210 00111     


Q ss_pred             CCCceeEEEEeCCc-----cccHHHHHHHHhcccCCeEEEEe
Q 029414          100 NEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       100 ~~~~fD~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                       .++||+|+++...     .+....++.+.++| |||.+++.
T Consensus       108 -~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          108 -AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             -TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             -CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence             3689999998652     34566788889999 99999986

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.40  E-value=3.2e-13  Score=107.94  Aligned_cols=100  Identities=19%  Similarity=0.211  Sum_probs=83.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ..+.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...++.  ++++.+|..+..         .++|
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~---------~~~f  262 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV---------KGRF  262 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC---------CSCE
T ss_pred             CCCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc---------cCCe
Confidence            3567999999999999999999875 679999999999999999999988764  567888876531         3689


Q ss_pred             eEEEEeCCcc--------ccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+|+++....        ....+++.+.+.|+|||.+++.
T Consensus       263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~  302 (343)
T 2pjd_A          263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (343)
T ss_dssp             EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            9999986522        3467899999999999999984

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.40  E-value=1.3e-12  Score=93.70  Aligned_cols=98  Identities=16%  Similarity=0.156  Sum_probs=75.2

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH-----HHHhhcC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-----DQLLKYS   98 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~~~   98 (194)
                      ..++.+|||+|||+|..+..++..++++.+++++|+++ +.+.           .++++..+|..+..     +...   
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~---   84 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERV---   84 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHH---
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccC---
Confidence            34567999999999999999999864368999999999 6532           37899999986642     1111   


Q ss_pred             CCCCceeEEEEeCCcc---cc-----------HHHHHHHHhcccCCeEEEEec
Q 029414           99 ENEGSFDYAFVDADKD---NY-----------CNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~---~~-----------~~~~~~~~~~L~~gG~lv~~~  137 (194)
                       ..++||+|+++....   ..           ..+++.+.+.|+|||.+++..
T Consensus        85 -~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (180)
T 1ej0_A           85 -GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             -TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence             136899999976521   11           578899999999999999854

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.40  E-value=4.8e-13  Score=99.28  Aligned_cols=102  Identities=10%  Similarity=0.057  Sum_probs=81.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++....  .+++++|+++.+++.+++++..   .+++++..+|..+.  .+     ..++|
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~--~~-----~~~~f  108 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKL--DF-----PSASF  108 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSC--CS-----CSSCE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcC--CC-----CCCcc
Confidence            4567999999999999999998743  3899999999999999998753   24799999998663  11     14689


Q ss_pred             eEEEEeCCc------------------cccHHHHHHHHhcccCCeEEEEecc
Q 029414          105 DYAFVDADK------------------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       105 D~i~id~~~------------------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      |+|++....                  .....+++.+.+.|+|||.+++.+.
T Consensus       109 D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          109 DVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             EEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence            999986431                  2346789999999999999999653

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.40  E-value=4.5e-12  Score=98.26  Aligned_cols=111  Identities=9%  Similarity=0.026  Sum_probs=83.3

Q ss_pred             CCCeEEEEcccc---cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH--h--hcC
Q 029414           26 NAKKTIEIGVFT---GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL--L--KYS   98 (194)
Q Consensus        26 ~~~~vLeiG~G~---G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~--~~~   98 (194)
                      ...+|||||||+   |..+..+++..+ +.+|+++|+++.+++.+++++..   .++++++.+|..+....+  .  ...
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRM  152 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhcc
Confidence            347999999999   988777766665 78999999999999999998843   248999999986531100  0  000


Q ss_pred             CCCCceeEEEEeCC---cc--ccHHHHHHHHhcccCCeEEEEecccc
Q 029414           99 ENEGSFDYAFVDAD---KD--NYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        99 ~~~~~fD~i~id~~---~~--~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ...++||+|++...   ..  ....+++.+.+.|+|||++++.+...
T Consensus       153 ~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          153 IDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             CCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             CCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            01247999998754   12  36789999999999999999987553

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.39  E-value=3.4e-13  Score=100.15  Aligned_cols=96  Identities=17%  Similarity=0.205  Sum_probs=77.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..+    + ..+++++|+++.+++.+++++      ++++++.+|..+. + +     ..++||
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~-----~~~~fD   97 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEAL-P-F-----PGESFD   97 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSC-C-S-----CSSCEE
T ss_pred             CCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccC-C-C-----CCCcEE
Confidence            6789999999999988877    2 238999999999999999876      3788999887653 1 1     146899


Q ss_pred             EEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +|++...   ..+...+++.+.+.|+|||.+++....
T Consensus        98 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A           98 VVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             EEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecC
Confidence            9998865   346778999999999999999997543

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=99.39  E-value=1.1e-11  Score=94.60  Aligned_cols=149  Identities=15%  Similarity=0.050  Sum_probs=103.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhh------CCCCCEEEEEeC-----Ccch-------------------HHhHHHH----
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALT------IPEDGQITAIDV-----NRET-------------------YEIGLPI----   70 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~------~~~~~~v~~iD~-----~~~~-------------------~~~a~~~----   70 (194)
                      .-+..|+|+|+..|.++..++..      .....+++++|.     .+..                   .+..++.    
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            34789999999999999997653      123679999993     2210                   0112221    


Q ss_pred             --HHHcCC-CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc-cccHHHHHHHHhcccCCeEEEEecccccccccC
Q 029414           71 --IKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV  146 (194)
Q Consensus        71 --~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~-~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~  146 (194)
                        ++..+. +++++++.|++.+.++.+..+ ...++||++++|++. ..+...++.+++.|+|||+|+++|..+++    
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~-~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~----  222 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAE-NPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPK----  222 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHHHHHHH-CTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTT----
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHHHHHHh-CCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCC----
Confidence              123454 378999999999998886433 113479999999985 56778899999999999999999964211    


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecCCeeEEEE
Q 029414          147 PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICR  191 (194)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~i~~  191 (194)
                                  . ..+++.++.+..........+|+..+....+
T Consensus       223 ------------w-~G~~~A~~ef~~~~~~~i~~~p~~~~~~y~~  254 (257)
T 3tos_A          223 ------------W-PGENIAMRKVLGLDHAPLRLLPGRPAPAYLR  254 (257)
T ss_dssp             ------------C-THHHHHHHHHTCTTSSCCEECTTCSCCEEEE
T ss_pred             ------------C-hHHHHHHHHHHhhCCCeEEEccCCCCCEEEE
Confidence                        0 0144444555556678888888887776543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.39  E-value=1e-12  Score=100.70  Aligned_cols=109  Identities=20%  Similarity=0.107  Sum_probs=81.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC----------------------------C
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----------------------------D   77 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----------------------------~   77 (194)
                      ++.+|||+|||+|..+..++....  .+|+++|+++.+++.+++++...+.                            .
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            457899999999999999887532  4899999999999999998864321                            0


Q ss_pred             CcE-EEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc-------ccHHHHHHHHhcccCCeEEEEeccc
Q 029414           78 HKI-NFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        78 ~~v-~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      .++ ++..+|..+..+.. .  ...++||+|++.....       +...+++.+.++|+|||.+++.+..
T Consensus       134 ~~v~~~~~~d~~~~~~~~-~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLG-G--VSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             HHEEEEEECCTTSSSTTT-T--CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhheeEEEeeeccCCCCC-c--cccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence            127 88999886642211 0  0126899999876522       5678899999999999999997643

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.39  E-value=8.1e-13  Score=109.94  Aligned_cols=100  Identities=16%  Similarity=0.185  Sum_probs=83.2

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++++|||+|||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|..+.  .+      .++|
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~--~~------~~~f  225 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV--SL------PEQV  225 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SSCE
T ss_pred             cCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC--cc------CCCe
Confidence            36789999999999999999874 3 57999999998 9999999999999877999999998763  11      3689


Q ss_pred             eEEEEeCC-----ccccHHHHHHHHhcccCCeEEEE
Q 029414          105 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       105 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      |+|+++..     .+.....+..+.+.|+|||++++
T Consensus       226 D~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          226 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             EEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             EEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            99998764     24456667778899999999985

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.39  E-value=1.5e-12  Score=102.50  Aligned_cols=108  Identities=13%  Similarity=0.099  Sum_probs=83.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC------CCCcEEEEecchHHHH--HHHhhc
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVL--DQLLKY   97 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~--~~~~~~   97 (194)
                      ++.+|||+|||+|..+..++..  ...+++++|+++.+++.+++++...+      ...+++++.+|..+..  ..+.  
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--  109 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR--  109 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS--
T ss_pred             CCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc--
Confidence            6789999999999999999874  26799999999999999999987642      2247999999987641  0010  


Q ss_pred             CCCCCceeEEEEeCCc-------cccHHHHHHHHhcccCCeEEEEecc
Q 029414           98 SENEGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                       ...++||+|++....       .+...+++.+.+.|+|||++++...
T Consensus       110 -~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          110 -DPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             -STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             -cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence             013589999987653       2345889999999999999998643

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.39  E-value=3e-12  Score=105.36  Aligned_cols=123  Identities=11%  Similarity=0.130  Sum_probs=92.4

Q ss_pred             ccCCCCHH-HHHHHHHHHHH---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEE
Q 029414            6 AMMGTAPD-AGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN   81 (194)
Q Consensus         6 ~~~~~~~~-~~~~l~~l~~~---~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~   81 (194)
                      .+++.++. ...++..+...   .++.+|||+|||+|..++.+|..   ..+|+++|+++++++.|++++..++++ +++
T Consensus       262 ~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~  337 (433)
T 1uwv_A          262 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVT  337 (433)
T ss_dssp             SCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEE
T ss_pred             cccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceE
Confidence            45565555 34444444332   35679999999999999999986   569999999999999999999999887 899


Q ss_pred             EEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           82 FIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        82 ~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++.+|+.+.++.+..   ..++||+|++|.+.......++.+ ..++|+++++++
T Consensus       338 f~~~d~~~~l~~~~~---~~~~fD~Vv~dPPr~g~~~~~~~l-~~~~p~~ivyvs  388 (433)
T 1uwv_A          338 FYHENLEEDVTKQPW---AKNGFDKVLLDPARAGAAGVMQQI-IKLEPIRIVYVS  388 (433)
T ss_dssp             EEECCTTSCCSSSGG---GTTCCSEEEECCCTTCCHHHHHHH-HHHCCSEEEEEE
T ss_pred             EEECCHHHHhhhhhh---hcCCCCEEEECCCCccHHHHHHHH-HhcCCCeEEEEE
Confidence            999999774332110   135799999998865555666555 447899988875

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.38  E-value=8.9e-13  Score=99.50  Aligned_cols=98  Identities=10%  Similarity=0.106  Sum_probs=79.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...+   +++++|+++.+++.+++++      ++++++.+|..+..  .      .++|
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~--~------~~~~  101 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFR--L------GRKF  101 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCC--C------SSCE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcc--c------CCCC
Confidence            4668999999999999999998743   9999999999999998874      36899999986531  1      3689


Q ss_pred             eEEEEeCC----c---cccHHHHHHHHhcccCCeEEEEeccc
Q 029414          105 DYAFVDAD----K---DNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       105 D~i~id~~----~---~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      |+|++...    .   .+...+++.+.+.|+|||.+++....
T Consensus       102 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (239)
T 3bxo_A          102 SAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW  143 (239)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             cEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            99996432    1   44578899999999999999997543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.38  E-value=2.9e-12  Score=99.63  Aligned_cols=104  Identities=14%  Similarity=0.116  Sum_probs=75.2

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHhHHHHH-----HHcCCC----CcEEEEecch---HH-H
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPII-----KKAGVD----HKINFIESEA---LS-V   90 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~-----~~~~~~----~~v~~~~~d~---~~-~   90 (194)
                      .++++|||+|||+|..++.++.. . ..+|+++|+ ++++++.+++++     ...++.    +++++...+.   .+ .
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence            46789999999999999999875 2 359999999 899999999999     555543    4688874442   22 2


Q ss_pred             HHHHhhcCCCCCceeEEEE-eCC--ccccHHHHHHHHhccc---C--CeEEEE
Q 029414           91 LDQLLKYSENEGSFDYAFV-DAD--KDNYCNYHERLMKLLK---V--GGIAVY  135 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~i-d~~--~~~~~~~~~~~~~~L~---~--gG~lv~  135 (194)
                      ...+     ..++||+|++ |..  ......+++.+.++|+   |  ||.+++
T Consensus       156 ~~~~-----~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          156 QRCT-----GLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             HHHH-----SCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             Hhhc-----cCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            2211     1368999987 433  4557788999999999   9  998766

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.38  E-value=2.1e-12  Score=94.22  Aligned_cols=97  Identities=12%  Similarity=0.090  Sum_probs=78.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++      .+++++.+|..+..  +     ..++|
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~--~-----~~~~~  108 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQ--I-----SETDF  108 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSC--C-----CCCCE
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCC--C-----CCCce
Confidence            46789999999999999999986   569999999999999999875      25888998886531  1     13689


Q ss_pred             eEEEEeCC-c-----cccHHHHHHHHhcccCCeEEEEec
Q 029414          105 DYAFVDAD-K-----DNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       105 D~i~id~~-~-----~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |+|++.+. .     .....+++.+.+.|+|||.+++..
T Consensus       109 D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A          109 DLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            99999743 1     334788999999999999999964

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.37  E-value=1.3e-12  Score=100.28  Aligned_cols=95  Identities=17%  Similarity=0.221  Sum_probs=76.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..++..   +.+++++|+++.+++.++++..     .+  +..+|..+..  +     ..++||
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~~--~-----~~~~fD  116 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDLP--F-----PSGAFE  116 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSCC--S-----CTTCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHCC--C-----CCCCEE
Confidence            6789999999999999999985   5699999999999999998753     12  7777775531  1     146899


Q ss_pred             EEEEeCC----ccccHHHHHHHHhcccCCeEEEEec
Q 029414          106 YAFVDAD----KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       106 ~i~id~~----~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +|++...    ..+...+++.+.+.|+|||.+++..
T Consensus       117 ~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          117 AVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV  152 (260)
T ss_dssp             EEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEe
Confidence            9998753    2457888999999999999999854

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.36  E-value=1.9e-12  Score=100.57  Aligned_cols=107  Identities=20%  Similarity=0.229  Sum_probs=89.3

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc--C-C-CCcEEEEecchHHHHHHHhhcCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--G-V-DHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~-~-~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      ..+|++||-||.|.|..+.++++..+ ..+++.+|+++..++.+++.+...  + . +++++++.+|+.+++...     
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~-----  154 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT-----  154 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS-----
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc-----
Confidence            45789999999999999999998754 689999999999999999998542  1 1 369999999998876542     


Q ss_pred             CCCceeEEEEeCC-------ccccHHHHHHHHhcccCCeEEEEec
Q 029414          100 NEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       100 ~~~~fD~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                       .++||+|++|..       .-...++++.+.+.|+|||+++...
T Consensus       155 -~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          155 -SQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             -SCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             -cccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence             578999999964       1235689999999999999999853

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=99.35  E-value=7.9e-12  Score=100.04  Aligned_cols=147  Identities=15%  Similarity=0.084  Sum_probs=106.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc-----CC--CCcEEEEecchHHHHHHHhhc
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-----GV--DHKINFIESEALSVLDQLLKY   97 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----~~--~~~v~~~~~d~~~~~~~~~~~   97 (194)
                      .++++||-||.|.|..+.++++. + ..+++.+|++++.++.+++.+...     ..  .++++++.+|+.+++......
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence            35789999999999999999886 4 479999999999999999987431     11  146899999999988764332


Q ss_pred             CCCCCceeEEEEeCCc-------------cccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHH
Q 029414           98 SENEGSFDYAFVDADK-------------DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  164 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~-------------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  164 (194)
                         .++||+|++|...             ....++++.+.+.|+|||+++.+....         .        ......
T Consensus       282 ---~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~---------~--------~~~~~~  341 (381)
T 3c6k_A          282 ---GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV---------N--------LTEALS  341 (381)
T ss_dssp             ---TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEET---------T--------CHHHHH
T ss_pred             ---cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCC---------c--------chhHHH
Confidence               4689999999531             113577899999999999999853211         0        122356


Q ss_pred             HHHHHhhcC-CCeEE----Eeee---cCCeeEEEEEc
Q 029414          165 DLNRSLADD-PRVQL----SHVA---LGDGITICRRI  193 (194)
Q Consensus       165 ~~~~~l~~~-~~~~~----~~~p---~~~G~~i~~~~  193 (194)
                      .+.+.+++. +.+..    ..+|   -.||+.++.|+
T Consensus       342 ~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~  378 (381)
T 3c6k_A          342 LYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWKK  378 (381)
T ss_dssp             HHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEEC
T ss_pred             HHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEECC
Confidence            666777654 44432    2334   35899999885

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.35  E-value=3.3e-12  Score=98.04  Aligned_cols=108  Identities=17%  Similarity=0.117  Sum_probs=79.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhh-------CCC----CCEEEEEeCCc--------------chHHhHHHHHHHcC-----
Q 029414           26 NAKKTIEIGVFTGYSLLLTALT-------IPE----DGQITAIDVNR--------------ETYEIGLPIIKKAG-----   75 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~-------~~~----~~~v~~iD~~~--------------~~~~~a~~~~~~~~-----   75 (194)
                      ++.+|||+|+|+|++++.++..       .|.    ..+++++|..|              +..+.+++.+..+.     
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            3468999999999999998765       332    25899999987              34446677766521     


Q ss_pred             -----CC---CcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--c----cHHHHHHHHhcccCCeEEEE
Q 029414           76 -----VD---HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--N----YCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        76 -----~~---~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~----~~~~~~~~~~~L~~gG~lv~  135 (194)
                           +.   .+++++.+|+.+.++.+...  ....||+||+|+..+  +    ...+++.+.++|+|||+++.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~--~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDS--LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGG--GTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccc--cCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                 11   36789999999987765110  013799999997522  2    57899999999999999997

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.35  E-value=4.1e-12  Score=99.06  Aligned_cols=97  Identities=12%  Similarity=0.055  Sum_probs=78.1

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      +.++..++.....+...+...++.+|||+|||+|..+..++..   ..+++++|+++.+++.+++++...+..+++++++
T Consensus         7 gq~fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~   83 (285)
T 1zq9_A            7 GQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLV   83 (285)
T ss_dssp             -CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEE
T ss_pred             CcCccCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence            4555667777666666666667789999999999999999987   4599999999999999999987766645899999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCc
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADK  113 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~  113 (194)
                      +|+.+.  .       .+.||+|+++.+.
T Consensus        84 ~D~~~~--~-------~~~fD~vv~nlpy  103 (285)
T 1zq9_A           84 GDVLKT--D-------LPFFDTCVANLPY  103 (285)
T ss_dssp             SCTTTS--C-------CCCCSEEEEECCG
T ss_pred             cceecc--c-------chhhcEEEEecCc
Confidence            998763  1       2579999998653

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.33  E-value=1.4e-11  Score=90.73  Aligned_cols=107  Identities=13%  Similarity=0.173  Sum_probs=79.0

Q ss_pred             CCHHHHHHHHHHHHH---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414           10 TAPDAGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~---~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      +.......+...+..   .++.+|||+|||+|..+..++.. + ..+++++|+++.+++.+++++.      +++++++|
T Consensus        32 ~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d  103 (200)
T 1ne2_A           32 TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG------GVNFMVAD  103 (200)
T ss_dssp             CCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT------TSEEEECC
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC------CCEEEECc
Confidence            334444444444432   25679999999999999999986 2 4689999999999999998864      68999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCc-----cccHHHHHHHHhcccCCeEEEEe
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +.+.          .++||+|+++.+.     .....+++.+.+.+  |+++++.
T Consensus       104 ~~~~----------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A          104 VSEI----------SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             GGGC----------CCCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEE
T ss_pred             HHHC----------CCCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEE
Confidence            8763          2689999999762     23456788888887  5555554

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.33  E-value=4e-12  Score=97.85  Aligned_cols=95  Identities=18%  Similarity=0.231  Sum_probs=77.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++...+ +.+++++|+++.+++.++++.      .++.+..+|..+. + +     ..++|
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~-----~~~~f  149 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P-F-----SDTSM  149 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S-B-----CTTCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhC-C-C-----CCCce
Confidence            4678999999999999999999875 779999999999999998764      3678888887553 1 1     14689


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |+|++....    ..++.+.+.|+|||.+++..
T Consensus       150 D~v~~~~~~----~~l~~~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          150 DAIIRIYAP----CKAEELARVVKPGGWVITAT  178 (269)
T ss_dssp             EEEEEESCC----CCHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEeCCh----hhHHHHHHhcCCCcEEEEEE
Confidence            999986543    34788999999999999864

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.31  E-value=3.4e-11  Score=96.58  Aligned_cols=105  Identities=16%  Similarity=0.097  Sum_probs=84.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .+..+|+|||||+|..+..+++.+| +.+++..|. |+.++.+++++...+ .++++++.+|+.+.  .       .+.+
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~--~-------~~~~  245 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKD--P-------LPEA  245 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTS--C-------CCCC
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccC--C-------CCCc
Confidence            3567999999999999999999998 889999997 889999998876544 46999999998642  1       3568


Q ss_pred             eEEEEeCCc-----cccHHHHHHHHhcccCCeEEEEeccccc
Q 029414          105 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus       105 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      |++++....     +.....++++.+.|+|||.+++.+...+
T Consensus       246 D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~  287 (353)
T 4a6d_A          246 DLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLD  287 (353)
T ss_dssp             SEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred             eEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence            999987653     2345779999999999999988776543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.30  E-value=6.5e-13  Score=102.29  Aligned_cols=109  Identities=21%  Similarity=0.077  Sum_probs=77.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC----------------------------
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD----------------------------   77 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----------------------------   77 (194)
                      ++.+|||||||+|..+..++...  ..+|+++|+++.+++.|+++++.....                            
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            56789999999998777666542  247999999999999999987653210                            


Q ss_pred             CcEE-EEecchHHHHHHHhhcCCCCCceeEEEEeCC-------ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           78 HKIN-FIESEALSVLDQLLKYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        78 ~~v~-~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      .+++ ++++|..+..+.. .  ...++||+|++...       .++....++.+.++|||||.+++.+..
T Consensus       133 ~~i~~~~~~D~~~~~~~~-~--~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLA-P--AVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             HHEEEEEECCTTSSSTTT-T--CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhhheEEeccccCCCCCC-c--cccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence            1243 7777775521100 0  01368999998754       134567889999999999999998643

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.30  E-value=7.8e-12  Score=92.05  Aligned_cols=99  Identities=16%  Similarity=0.210  Sum_probs=70.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH------------
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL------------   91 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------   91 (194)
                      .++.+|||+|||+|..+..++..+++ +++|+++|+++..           .. ++++++++|..+..            
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhcccccccc
Confidence            45679999999999999999998763 5899999999842           12 36888888875531            


Q ss_pred             -------HHHhhcCCCCCceeEEEEeCCcc-------cc-------HHHHHHHHhcccCCeEEEEe
Q 029414           92 -------DQLLKYSENEGSFDYAFVDADKD-------NY-------CNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        92 -------~~~~~~~~~~~~fD~i~id~~~~-------~~-------~~~~~~~~~~L~~gG~lv~~  136 (194)
                             ..+... ...++||+|+++....       +.       ...++.+.+.|+|||.+++.
T Consensus        89 ~~~~~~~~~~~~~-~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~  153 (201)
T 2plw_A           89 MNNNSVDYKLKEI-LQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK  153 (201)
T ss_dssp             ---CHHHHHHHHH-HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchhhHHHHHhh-cCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence                   000000 0136899999986421       11       13678889999999999984

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.30  E-value=5.1e-12  Score=94.50  Aligned_cols=101  Identities=20%  Similarity=0.248  Sum_probs=79.5

Q ss_pred             HHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhh
Q 029414           17 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   96 (194)
Q Consensus        17 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~   96 (194)
                      .+..+....++.+|||+|||+|..+..++..       +++|+++.+++.++++        ++++..+|..+. + +  
T Consensus        38 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~--   98 (219)
T 1vlm_A           38 ELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--------GVFVLKGTAENL-P-L--   98 (219)
T ss_dssp             HHHHHHHHCCSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--------TCEEEECBTTBC-C-S--
T ss_pred             HHHHHHHhCCCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--------CCEEEEcccccC-C-C--
Confidence            3445555556889999999999999888752       9999999999998876        578888887553 1 1  


Q ss_pred             cCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           97 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                         ..++||+|++...   ..+...+++.+.+.|+|||.+++....
T Consensus        99 ---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A           99 ---KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             ---CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ---CCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence               1468999998865   345678999999999999999997543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.30  E-value=2.9e-12  Score=104.74  Aligned_cols=100  Identities=15%  Similarity=0.176  Sum_probs=75.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..++..   +.+++++|+++.+++.++++    +.+....++..+..+.++..      .++||
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~------~~~fD  173 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT------EGPAN  173 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH------HCCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC------CCCEE
Confidence            5679999999999999999985   56999999999999988876    33312222222222222221      37899


Q ss_pred             EEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          106 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       106 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +|++...   .++...+++.+.++|+|||++++...
T Consensus       174 ~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          174 VIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             EEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9998865   45678999999999999999999743

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.30  E-value=1.1e-11  Score=99.06  Aligned_cols=103  Identities=13%  Similarity=0.076  Sum_probs=79.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      +..+|||||||+|..+..+++.++ +.+++++|+ +..+.  ++++...+..++++++.+|..+   .+       ++||
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~---~~-------p~~D  249 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR---EV-------PHAD  249 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT---CC-------CCCS
T ss_pred             CCceEEEECCccCHHHHHHHHHCC-CCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC---CC-------CCCc
Confidence            467999999999999999999987 789999999 44443  3333334555689999999852   11       3899


Q ss_pred             EEEEeCCcc-----ccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          106 YAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       106 ~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      +|++.....     ....+++++.+.|||||.+++.+...+.
T Consensus       250 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~  291 (348)
T 3lst_A          250 VHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE  291 (348)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred             EEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            999876522     2258899999999999999998765544

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.29  E-value=4.7e-11  Score=87.71  Aligned_cols=96  Identities=21%  Similarity=0.231  Sum_probs=69.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HH---HHhhcCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LD---QLLKYSE   99 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~---~~~~~~~   99 (194)
                      .++.+|||+|||+|.++..+++.   .++|+++|+++..           .. ++++++++|..+.  ..   ..... .
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~-~   87 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALRE-E   87 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHH-H
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhc-c
Confidence            35789999999999999999986   6799999999852           12 3799999997542  11   11100 0


Q ss_pred             CCCceeEEEEeCCcc--------------ccHHHHHHHHhcccCCeEEEEe
Q 029414          100 NEGSFDYAFVDADKD--------------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       100 ~~~~fD~i~id~~~~--------------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..++||+|++|....              .....++.+.++|+|||.+++.
T Consensus        88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k  138 (191)
T 3dou_A           88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK  138 (191)
T ss_dssp             TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            014899999986421              1235677788999999999985

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.29  E-value=8.1e-11  Score=94.23  Aligned_cols=120  Identities=15%  Similarity=0.083  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-----CcEEEEecchH
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-----HKINFIESEAL   88 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~   88 (194)
                      ...+...++...++.+|||+++|.|.=|..+|...+ +++++++|+++..+...++++++.+..     .++.+...|+.
T Consensus       136 aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~  214 (359)
T 4fzv_A          136 ASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGR  214 (359)
T ss_dssp             GGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGG
T ss_pred             HHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchh
Confidence            344445555566778999999999999999998765 678999999999999999999987653     47899999987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCccc---------------------------cHHHHHHHHhcccCCeEEEEecccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKDN---------------------------YCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~~---------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ......      .+.||.|++|++.+.                           ....++.++++|||||+||...+..
T Consensus       215 ~~~~~~------~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          215 KWGELE------GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             GHHHHS------TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             hcchhc------cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            764432      478999999975111                           1356788899999999999987664

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.28  E-value=1.5e-11  Score=93.65  Aligned_cols=145  Identities=9%  Similarity=-0.026  Sum_probs=104.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ..+.+|||+|||+|-.++.++...+ ..+++++|+++.+++.+++++..+++.  .++.+.|.....+        .++|
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p--------~~~~  199 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRL--------DEPA  199 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCC--------CSCC
T ss_pred             CCCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCC--------CCCc
Confidence            4588999999999999999988665 899999999999999999999999875  6788877654322        4789


Q ss_pred             eEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEE
Q 029414          105 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS  179 (194)
Q Consensus       105 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (194)
                      |++++.-.     .......+ .+...|+++|++|--+.-.-          ..+..+ +.....++++....+.++...
T Consensus       200 DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl----------~Grs~g-m~~~Y~~~~e~~~~~~g~~~~  267 (281)
T 3lcv_B          200 DVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSL----------GQRSKG-MFQNYSQSFESQARERSCRIQ  267 (281)
T ss_dssp             SEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-----------------C-HHHHHHHHHHHHHHHHTCCEE
T ss_pred             chHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhh----------cCCCcc-hhhHHHHHHHHHHHhcCCcee
Confidence            99988654     12222445 68899999999998655211          111222 444555555555555566777


Q ss_pred             eeecCCeeEEEEE
Q 029414          180 HVALGDGITICRR  192 (194)
Q Consensus       180 ~~p~~~G~~i~~~  192 (194)
                      .+-+++-+..+.+
T Consensus       268 ~~~~~nEl~y~i~  280 (281)
T 3lcv_B          268 RLEIGNELIYVIQ  280 (281)
T ss_dssp             EEEETTEEEEEEC
T ss_pred             eeeecCeeEEEec
Confidence            7788888776654

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.28  E-value=3.6e-11  Score=93.96  Aligned_cols=107  Identities=13%  Similarity=0.059  Sum_probs=80.6

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      +.++.+.+.....+...+...++.+|||||||+|..|..++..   ..+|+++|+++++++.+++++...   +++++++
T Consensus        29 GQnfL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~  102 (295)
T 3gru_A           29 GQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKELY---NNIEIIW  102 (295)
T ss_dssp             -CCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEE
T ss_pred             CccccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhccC---CCeEEEE
Confidence            3455666767666666666667789999999999999999987   469999999999999999998732   3899999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHH
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  124 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~  124 (194)
                      +|+.+....       ..+||.|+.+.+.......+..+.
T Consensus       103 gD~l~~~~~-------~~~fD~Iv~NlPy~is~pil~~lL  135 (295)
T 3gru_A          103 GDALKVDLN-------KLDFNKVVANLPYQISSPITFKLI  135 (295)
T ss_dssp             SCTTTSCGG-------GSCCSEEEEECCGGGHHHHHHHHH
T ss_pred             CchhhCCcc-------cCCccEEEEeCcccccHHHHHHHH
Confidence            999774211       246999998876443344433333

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.28  E-value=1.2e-11  Score=97.01  Aligned_cols=97  Identities=13%  Similarity=0.121  Sum_probs=73.9

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      +..+..++.....+...+...++.+|||+|||+|..+..++..   ..+|+++|+++.+++.+++++...+.+ +++++.
T Consensus        21 Gq~fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~-~v~~~~   96 (299)
T 2h1r_A           21 GQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYN-NLEVYE   96 (299)
T ss_dssp             --CEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCC-CEEC--
T ss_pred             ccceecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEE
Confidence            3455666777776666666667789999999999999999985   569999999999999999999877764 899999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCcc
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADKD  114 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~~  114 (194)
                      +|+.+.  .       .++||+|+++.+..
T Consensus        97 ~D~~~~--~-------~~~~D~Vv~n~py~  117 (299)
T 2h1r_A           97 GDAIKT--V-------FPKFDVCTANIPYK  117 (299)
T ss_dssp             --CCSS--C-------CCCCSEEEEECCGG
T ss_pred             CchhhC--C-------cccCCEEEEcCCcc
Confidence            998653  1       25799999987643

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.28  E-value=6.5e-12  Score=97.80  Aligned_cols=110  Identities=14%  Similarity=0.012  Sum_probs=74.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC-----------------CC-----------
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-----------------VD-----------   77 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-----------------~~-----------   77 (194)
                      ++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.+++++....                 ..           
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACS-H-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGG-G-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhcc-C-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            5689999999999954444432 2 5699999999999999998764321                 00           


Q ss_pred             -CcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc-------cccHHHHHHHHhcccCCeEEEEecc
Q 029414           78 -HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        78 -~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                       ..++++.+|..+.++. .......++||+|++....       .+...+++.+.++|||||.+++.+.
T Consensus       149 ~~~~~~~~~D~~~~~~~-~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~  216 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPL-GAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  216 (289)
T ss_dssp             HHEEEEECCCTTSSSTT-CSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhhceEEecccCCCCCc-cccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence             0145666676542210 0000013569999988651       2567889999999999999999753

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.26  E-value=1.5e-11  Score=99.13  Aligned_cols=98  Identities=9%  Similarity=0.084  Sum_probs=77.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      +..+|||||||+|..+..+++.++ +.+++++|+ +.+++.+++.       ++++++.+|..+.   +      ... |
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~------p~~-D  263 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYP-SINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDG---V------PKG-D  263 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTC---C------CCC-S
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCC---C------CCC-C
Confidence            357999999999999999999987 889999999 8887766532       4899999998651   1      123 9


Q ss_pred             EEEEeCCcc-----ccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          106 YAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       106 ~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      +|++.....     ....+++++.+.|+|||.+++.+...+.
T Consensus       264 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  305 (368)
T 3reo_A          264 AIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPP  305 (368)
T ss_dssp             EEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCS
T ss_pred             EEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            999876532     3357799999999999999998776543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.26  E-value=1.1e-11  Score=96.39  Aligned_cols=113  Identities=22%  Similarity=0.151  Sum_probs=77.9

Q ss_pred             CHHHHHHHHHHHHH---cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-cc
Q 029414           11 APDAGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SE   86 (194)
Q Consensus        11 ~~~~~~~l~~l~~~---~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d   86 (194)
                      ++....+...+...   .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+.++      .+++..+. .+
T Consensus        67 srg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-g-a~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~n  138 (291)
T 3hp7_A           67 SRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-G-AKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYN  138 (291)
T ss_dssp             STTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSSSCSCHHHHT------CTTEEEECSCC
T ss_pred             cchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHh------CcccceecccC
Confidence            34444444444432   24579999999999999999886 2 46999999999999875432      12444332 33


Q ss_pred             hHHHHH-HHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           87 ALSVLD-QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        87 ~~~~~~-~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ...... .+     ...+||+|++|.........+..+.+.|+|||.+++-
T Consensus       139 i~~l~~~~l-----~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          139 FRYAEPVDF-----TEGLPSFASIDVSFISLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             GGGCCGGGC-----TTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             ceecchhhC-----CCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence            322111 11     1235999999987667788899999999999999884

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.26  E-value=9.8e-12  Score=99.30  Aligned_cols=116  Identities=16%  Similarity=0.145  Sum_probs=88.7

Q ss_pred             CHHHHHHHHHHHH----HcCCCeEEEEcccccHHHHHHHhhCCCC----CEEEEEeCCcchHHhHHHHHHHcCCCCcEEE
Q 029414           11 APDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPED----GQITAIDVNRETYEIGLPIIKKAGVDHKINF   82 (194)
Q Consensus        11 ~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~~~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~   82 (194)
                      ......++..++.    ..++.+|||+|||+|..+..++..++..    .+++++|+++.+++.|+.++...++  ++.+
T Consensus       111 P~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i  188 (344)
T 2f8l_A          111 PDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTL  188 (344)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEE
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceE
Confidence            3455555554443    2245799999999999999998876422    7899999999999999999988876  5789


Q ss_pred             EecchHHHHHHHhhcCCCCCceeEEEEeCCccc---------------------cHHHHHHHHhcccCCeEEEEe
Q 029414           83 IESEALSVLDQLLKYSENEGSFDYAFVDADKDN---------------------YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        83 ~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~---------------------~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +.+|+....        ..++||+|+.+++...                     ...+++.+.+.|+|||.+++.
T Consensus       189 ~~~D~l~~~--------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v  255 (344)
T 2f8l_A          189 LHQDGLANL--------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL  255 (344)
T ss_dssp             EESCTTSCC--------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EECCCCCcc--------ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence            999986521        1368999999976211                     125789999999999998874

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.25  E-value=6e-11  Score=86.85  Aligned_cols=100  Identities=11%  Similarity=0.150  Sum_probs=71.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCC--------CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE-ecchHHHHH--H
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPED--------GQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLD--Q   93 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~--------~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~~--~   93 (194)
                      .++.+|||+|||+|..+..++..++..        ++++++|+++..           .. ++++++ .+|..+...  .
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHH
Confidence            356899999999999999999987632        799999999842           12 368888 888654311  1


Q ss_pred             HhhcCCCCCceeEEEEeCCcc-------cc-------HHHHHHHHhcccCCeEEEEec
Q 029414           94 LLKYSENEGSFDYAFVDADKD-------NY-------CNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~~-------~~-------~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +... ...++||+|+++....       +.       ..+++.+.+.|+|||.+++..
T Consensus        89 ~~~~-~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           89 ILEV-LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHH-SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHh-cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            1000 0125799999976311       11       367888999999999999964

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.25  E-value=5.9e-11  Score=91.44  Aligned_cols=123  Identities=14%  Similarity=0.134  Sum_probs=83.1

Q ss_pred             HHHHHHHHH----HcCCCeEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           15 GQLMAMLLR----LVNAKKTIEIGVFT--GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        15 ~~~l~~l~~----~~~~~~vLeiG~G~--G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      ..++...++    .....++||+|||+  +.++..++....++.+|+++|.|+.+++.+++++...+ ..+++++++|..
T Consensus        63 r~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~  141 (277)
T 3giw_A           63 RDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADML  141 (277)
T ss_dssp             HHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTT
T ss_pred             HHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEeccc
Confidence            444544443    23457999999997  44556666544348999999999999999999986543 247999999987


Q ss_pred             HHHHHHhhcCCCCCcee-----EEEEeCC---ccc---cHHHHHHHHhcccCCeEEEEeccc
Q 029414           89 SVLDQLLKYSENEGSFD-----YAFVDAD---KDN---YCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD-----~i~id~~---~~~---~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +....+... ...+.||     .|++...   ..+   ....++.+.+.|+|||+|++....
T Consensus       142 ~~~~~l~~~-~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~  202 (277)
T 3giw_A          142 DPASILDAP-ELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT  202 (277)
T ss_dssp             CHHHHHTCH-HHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred             Chhhhhccc-ccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence            752211000 0013344     4666554   122   467899999999999999997654

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.25  E-value=2.4e-12  Score=97.44  Aligned_cols=98  Identities=15%  Similarity=0.138  Sum_probs=68.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHHHH-HHHhhcCCCCCc
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVL-DQLLKYSENEGS  103 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~-~~~~~~~~~~~~  103 (194)
                      ++++|||+|||+|..+..++...  ..+|+++|+++.+++.++++..      ++..... +..... ..+     ....
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g--~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~~~~~-----~~~~  103 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNG--AKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAVLADF-----EQGR  103 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCCGGGC-----CSCC
T ss_pred             CCCEEEEEccCCCHHHHHHHhcC--CCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeCHhHc-----CcCC
Confidence            45699999999999999999862  3599999999999998766432      3332221 221110 111     0123


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ||.+.+|........+++.+.+.|+|||.+++.
T Consensus       104 ~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          104 PSFTSIDVSFISLDLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             CSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             CCEEEEEEEhhhHHHHHHHHHHhccCCCEEEEE
Confidence            677777766555678899999999999999984

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.24  E-value=7.4e-12  Score=93.63  Aligned_cols=97  Identities=13%  Similarity=0.103  Sum_probs=76.6

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++        .++..+|..+....+     ..++|
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~-----~~~~f   94 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPY-----EEEQF   94 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT---TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCS-----CTTCE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCC-----CCCcc
Confidence            36789999999999999999986   379999999999998887653        267778875421111     13689


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEec
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |+|++...   ..+...+++.+.+.|+|||.+++..
T Consensus        95 D~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A           95 DCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI  130 (230)
T ss_dssp             EEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEE
T ss_pred             CEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence            99998765   3456788999999999999999964

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.23  E-value=7.5e-12  Score=96.17  Aligned_cols=92  Identities=17%  Similarity=0.171  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-------chHHhHHHHHHHcCCCCcEEEEecch
Q 029414           15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-------ETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus        15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~-------~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      ..++...+...++.+|||+|||+|..++.+|..   +++|+++|+++       ++++.++++.+.+++.++++++++|+
T Consensus        72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~  148 (258)
T 2r6z_A           72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA  148 (258)
T ss_dssp             -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH
T ss_pred             hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH
Confidence            344444444455689999999999999999985   56999999999       99999999888777665799999999


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCC
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      .+.++.+...   .++||+|++|+.
T Consensus       149 ~~~l~~~~~~---~~~fD~V~~dP~  170 (258)
T 2r6z_A          149 AEQMPALVKT---QGKPDIVYLDPM  170 (258)
T ss_dssp             HHHHHHHHHH---HCCCSEEEECCC
T ss_pred             HHHHHhhhcc---CCCccEEEECCC
Confidence            9877655210   157999999975

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.23  E-value=6.8e-11  Score=95.17  Aligned_cols=98  Identities=9%  Similarity=0.077  Sum_probs=78.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      +..+|||||||+|..+..+++.++ +.+++++|+ +++++.+++.       ++++++.+|..+  +.       ... |
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~-------p~~-D  261 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK--EV-------PSG-D  261 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT--CC-------CCC-S
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC--CC-------CCC-C
Confidence            467999999999999999999987 889999999 8777766532       489999999865  21       123 9


Q ss_pred             EEEEeCCc-----cccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          106 YAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       106 ~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      +|++....     ++...+++++.+.|+|||.+++.+...+.
T Consensus       262 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  303 (364)
T 3p9c_A          262 TILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPV  303 (364)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred             EEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            99987653     33457899999999999999998776543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.23  E-value=8.1e-11  Score=99.96  Aligned_cols=103  Identities=21%  Similarity=0.205  Sum_probs=79.7

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||||||.|..+..||+.   +..|+++|.++..++.|+.+..+.+.. ++++.++++.+.....     +.++
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~-----~~~~  134 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAAL-----EEGE  134 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHC-----CTTS
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhc-----cCCC
Confidence            346789999999999999999996   679999999999999999999887744 7999999998876553     2468


Q ss_pred             eeEEEEeCCccc-----cHHHHHHHHhcccCCeEEEE
Q 029414          104 FDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       104 fD~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ||+|++-...+.     ....+..+.+.|+++|..++
T Consensus       135 fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~  171 (569)
T 4azs_A          135 FDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVI  171 (569)
T ss_dssp             CSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred             ccEEEECcchhcCCCHHHHHHHHHHHHHhccccceee
Confidence            999998866222     12223445566777765444

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.21  E-value=5.9e-11  Score=90.99  Aligned_cols=110  Identities=9%  Similarity=0.060  Sum_probs=81.5

Q ss_pred             ccccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414            4 LRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   83 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~   83 (194)
                      ++.++..++.....+...+...++.+|||||||+|..|..++..   ..+|+++|+++++++.+++++..   .++++++
T Consensus         7 ~GQnFL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~---~~~v~~i   80 (255)
T 3tqs_A            7 FGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ---QKNITIY   80 (255)
T ss_dssp             --CCEECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT---CTTEEEE
T ss_pred             CCcccccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh---CCCcEEE
Confidence            45667778888888777777777889999999999999999986   46999999999999999999865   2489999


Q ss_pred             ecchHHH-HHHHhhcCCCCCceeEEEEeCCccccHHHHHHHH
Q 029414           84 ESEALSV-LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  124 (194)
Q Consensus        84 ~~d~~~~-~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~  124 (194)
                      ++|+.+. ++.+.    ..++|| |+.+.+..-....+..+.
T Consensus        81 ~~D~~~~~~~~~~----~~~~~~-vv~NlPY~is~~il~~ll  117 (255)
T 3tqs_A           81 QNDALQFDFSSVK----TDKPLR-VVGNLPYNISTPLLFHLF  117 (255)
T ss_dssp             ESCTTTCCGGGSC----CSSCEE-EEEECCHHHHHHHHHHHH
T ss_pred             EcchHhCCHHHhc----cCCCeE-EEecCCcccCHHHHHHHH
Confidence            9999875 23321    124688 777665333334444443

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.21  E-value=4e-10  Score=84.92  Aligned_cols=146  Identities=11%  Similarity=0.029  Sum_probs=100.3

Q ss_pred             HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      .....+.+|||+|||+|-.++.+.   + ..+++++|+++.+++.+++++...+.  +.++.++|.....+        .
T Consensus       101 ~~~~~p~~VLDlGCG~gpLal~~~---~-~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~--------~  166 (253)
T 3frh_A          101 FSAETPRRVLDIACGLNPLALYER---G-IASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPP--------A  166 (253)
T ss_dssp             TSSCCCSEEEEETCTTTHHHHHHT---T-CSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCC--------C
T ss_pred             hcCCCCCeEEEecCCccHHHHHhc---c-CCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCC--------C
Confidence            333568899999999999998877   3 78999999999999999999988873  68888888765322        3


Q ss_pred             CceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCe
Q 029414          102 GSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRV  176 (194)
Q Consensus       102 ~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  176 (194)
                      ++||++++.-.     .......+ .+...|++++++|.-++-.-+   ..       ..+ +.....++++.......+
T Consensus       167 ~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfPtksl~---Gr-------~~g-m~~~Y~~~~e~~~~~~~~  234 (253)
T 3frh_A          167 EAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFPTRSLG---GR-------GKG-MEANYAAWFEGGLPAEFE  234 (253)
T ss_dssp             CBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEECC----------------------CHHHHHHHHSCTTEE
T ss_pred             CCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcChHHhc---CC-------Ccc-hhhHHHHHHHHHhhccch
Confidence            68999987633     12222334 677899999998876532211   11       111 222244555554466667


Q ss_pred             EEEeeecCCeeEEEEEc
Q 029414          177 QLSHVALGDGITICRRI  193 (194)
Q Consensus       177 ~~~~~p~~~G~~i~~~~  193 (194)
                      ..-.+-+++-+....++
T Consensus       235 ~~~~~~~~nEl~~~i~~  251 (253)
T 3frh_A          235 IEDKKTIGTELIYLIKK  251 (253)
T ss_dssp             EEEEEEETTEEEEEEEE
T ss_pred             hhhheecCceEEEEEec
Confidence            77788888888776665

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.19  E-value=1.9e-10  Score=88.89  Aligned_cols=118  Identities=10%  Similarity=-0.007  Sum_probs=86.0

Q ss_pred             ccccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414            4 LRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   83 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~   83 (194)
                      ++.++..++.....+...+...++ +|||||||+|..|..++..   +.+|+++|+++++++.+++++.    ..+++++
T Consensus        25 ~GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~----~~~v~vi   96 (271)
T 3fut_A           25 FGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLS----GLPVRLV   96 (271)
T ss_dssp             SSCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTT----TSSEEEE
T ss_pred             CCccccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcC----CCCEEEE
Confidence            345666777777777777766677 9999999999999999986   4699999999999999999875    2489999


Q ss_pred             ecchHHHH-HHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhc-ccCCeEEEEe
Q 029414           84 ESEALSVL-DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL-LKVGGIAVYD  136 (194)
Q Consensus        84 ~~d~~~~~-~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~-L~~gG~lv~~  136 (194)
                      ++|+.+.. +.       ...+|.|+.+.+..-....+..+... .-+.+++++.
T Consensus        97 ~~D~l~~~~~~-------~~~~~~iv~NlPy~iss~il~~ll~~~~~~~~~lm~Q  144 (271)
T 3fut_A           97 FQDALLYPWEE-------VPQGSLLVANLPYHIATPLVTRLLKTGRFARLVFLVQ  144 (271)
T ss_dssp             ESCGGGSCGGG-------SCTTEEEEEEECSSCCHHHHHHHHHHCCEEEEEEEEE
T ss_pred             ECChhhCChhh-------ccCccEEEecCcccccHHHHHHHhcCCCCCEEEEEee
Confidence            99998752 22       13689999887654444454444433 1134555553

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.18  E-value=3.4e-11  Score=98.37  Aligned_cols=111  Identities=16%  Similarity=0.211  Sum_probs=82.3

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      +++. +.....+..++...++.+|||+|||+|..+..+++...+..+++++|+++.+++.|          .+++++++|
T Consensus        21 ~~TP-~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D   89 (421)
T 2ih2_A           21 VETP-PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILAD   89 (421)
T ss_dssp             CCCC-HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESC
T ss_pred             EeCC-HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCC
Confidence            4443 44455555544434567999999999999999998763367999999999998876          378999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCc---cc-----------------------------cHHHHHHHHhcccCCeEEE
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADK---DN-----------------------------YCNYHERLMKLLKVGGIAV  134 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~---~~-----------------------------~~~~~~~~~~~L~~gG~lv  134 (194)
                      ..+..+        .++||+|+++++.   ..                             +..+++.+.++|+|||.++
T Consensus        90 ~~~~~~--------~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~  161 (421)
T 2ih2_A           90 FLLWEP--------GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLV  161 (421)
T ss_dssp             GGGCCC--------SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhhcCc--------cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEE
Confidence            876421        3689999997541   00                             1256888999999999988


Q ss_pred             Ee
Q 029414          135 YD  136 (194)
Q Consensus       135 ~~  136 (194)
                      +-
T Consensus       162 ~i  163 (421)
T 2ih2_A          162 FV  163 (421)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.18  E-value=2e-11  Score=90.81  Aligned_cols=95  Identities=15%  Similarity=0.118  Sum_probs=72.1

Q ss_pred             HHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHh
Q 029414           16 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   95 (194)
Q Consensus        16 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~   95 (194)
                      .++..+....++.+|||+|||+|..+..++      .+++++|+++.                ++++..+|..+. + + 
T Consensus        57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------------~~~~~~~d~~~~-~-~-  111 (215)
T 2zfu_A           57 RIARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------------DPRVTVCDMAQV-P-L-  111 (215)
T ss_dssp             HHHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------------STTEEESCTTSC-S-C-
T ss_pred             HHHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------------CceEEEeccccC-C-C-
Confidence            455555545567899999999999988773      48999999986                356677777552 1 1 


Q ss_pred             hcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           96 KYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                          ..++||+|++...  ..+...+++.+.+.|+|||.+++.+..
T Consensus       112 ----~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~  153 (215)
T 2zfu_A          112 ----EDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVS  153 (215)
T ss_dssp             ----CTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             ----CCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence                1468999998755  356678899999999999999997543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.17  E-value=1.3e-11  Score=95.62  Aligned_cols=105  Identities=22%  Similarity=0.220  Sum_probs=75.1

Q ss_pred             CCCeEEEEcccccH----HHHHHHhhCCC---CCEEEEEeCCcchHHhHHHHHHH-----------------------cC
Q 029414           26 NAKKTIEIGVFTGY----SLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKK-----------------------AG   75 (194)
Q Consensus        26 ~~~~vLeiG~G~G~----~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~-----------------------~~   75 (194)
                      ++.+|+|+|||+|.    .+..+++..+.   +.+|+++|+|+++++.|++++-.                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    44555555332   35899999999999999986410                       00


Q ss_pred             ---C----CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEe
Q 029414           76 ---V----DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        76 ---~----~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                         +    ..++++.++|..+.  .+.    ..++||+|+|...     .+....+++.+.+.|+|||++++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~--~~~----~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEK--QYN----VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCS--SCC----CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCC--CCC----cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence               0    02688888887652  110    0268999999754     233467899999999999999994

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.14  E-value=5.3e-11  Score=95.98  Aligned_cols=97  Identities=14%  Similarity=0.155  Sum_probs=78.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..++...+ ..+++++|+ +.+++.+++      . ++++++.+|..+  + +       +.||
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~--~-~-------~~~D  269 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFA--S-V-------PQGD  269 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTT--C-C-------CCEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCccc--C-C-------CCCC
Confidence            467999999999999999999987 789999999 888877764      2 379999999865  1 1       3399


Q ss_pred             EEEEeCCcc---c--cHHHHHHHHhcccCCeEEEEeccccc
Q 029414          106 YAFVDADKD---N--YCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus       106 ~i~id~~~~---~--~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      +|++.....   +  ...+++.+.+.|+|||.+++.+...+
T Consensus       270 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~  310 (372)
T 1fp1_D          270 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP  310 (372)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            999876522   2  23889999999999999999776543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.14  E-value=2.1e-10  Score=89.88  Aligned_cols=85  Identities=16%  Similarity=0.101  Sum_probs=69.6

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+..++..++ +++|+++|.++++++.|++++..++  ++++++++|+.+....+...  ..++
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~--g~~~   98 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTL--GIEK   98 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHT--TCSC
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhc--CCCC
Confidence            44678999999999999999999886 7899999999999999999998877  48999999987753222110  1157


Q ss_pred             eeEEEEeCCc
Q 029414          104 FDYAFVDADK  113 (194)
Q Consensus       104 fD~i~id~~~  113 (194)
                      ||.|++|...
T Consensus        99 ~D~Vl~D~gv  108 (301)
T 1m6y_A           99 VDGILMDLGV  108 (301)
T ss_dssp             EEEEEEECSC
T ss_pred             CCEEEEcCcc
Confidence            9999999754

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.14  E-value=1.7e-11  Score=94.09  Aligned_cols=106  Identities=8%  Similarity=0.108  Sum_probs=73.8

Q ss_pred             HHHHHHHHcCC--CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--------CCCcEEEEecc
Q 029414           17 LMAMLLRLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--------VDHKINFIESE   86 (194)
Q Consensus        17 ~l~~l~~~~~~--~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--------~~~~v~~~~~d   86 (194)
                      .+...+...++  .+|||+|||+|..++++|..   +++|+++|.++.....++++++...        +..+++++++|
T Consensus        77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D  153 (258)
T 2oyr_A           77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (258)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred             HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence            33344444555  79999999999999999987   4589999999998888877775432        22479999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCccc--cHHHHHHHHhcccCCe
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVGG  131 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~~~--~~~~~~~~~~~L~~gG  131 (194)
                      +.+.++.+      .+.||+||+|+....  ..+.++...+.|++.+
T Consensus       154 ~~~~L~~~------~~~fDvV~lDP~y~~~~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          154 SLTALTDI------TPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             HHHHSTTC------SSCCSEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred             HHHHHHhC------cccCCEEEEcCCCCCcccchHHHHHHHHHHHhh
Confidence            98876654      247999999986321  2234444555555543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.13  E-value=1.1e-10  Score=94.69  Aligned_cols=114  Identities=12%  Similarity=0.050  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCC---C----------------------------------CCEEEE
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---E----------------------------------DGQITA   56 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~---~----------------------------------~~~v~~   56 (194)
                      .++.|-.++...++..+||.+||+|..++..|....   +                                  ..+|++
T Consensus       189 lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  268 (393)
T 3k0b_A          189 MAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG  268 (393)
T ss_dssp             HHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence            333333444344567899999999999888776532   1                                  156999


Q ss_pred             EeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc-------cccHHHHHHHHhcccC
Q 029414           57 IDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKLLKV  129 (194)
Q Consensus        57 iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~-------~~~~~~~~~~~~~L~~  129 (194)
                      +|+++.+++.|++++..+++.+++++.++|+.+...        ..+||+|+++++.       .....+++.+.+.|++
T Consensus       269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~--------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~  340 (393)
T 3k0b_A          269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT--------EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR  340 (393)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC--------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC--------CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc
Confidence            999999999999999999998789999999977421        3589999999773       2233344444444444


Q ss_pred             --CeEEEE
Q 029414          130 --GGIAVY  135 (194)
Q Consensus       130 --gG~lv~  135 (194)
                        ||.+++
T Consensus       341 ~~g~~~~i  348 (393)
T 3k0b_A          341 MPTWSVYV  348 (393)
T ss_dssp             CTTCEEEE
T ss_pred             CCCCEEEE
Confidence              766655

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.12  E-value=9.4e-11  Score=95.25  Aligned_cols=77  Identities=18%  Similarity=0.133  Sum_probs=66.9

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc--CCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      +.+|||+|||+|..++.++..   +.+|+++|+++.+++.++++++..  ++ ++++++++|+.+.++...     .++|
T Consensus        94 g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~-----~~~f  164 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK-----TFHP  164 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH-----HHCC
T ss_pred             CCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc-----CCCc
Confidence            789999999999999999986   569999999999999999999988  77 589999999988655431     2579


Q ss_pred             eEEEEeCC
Q 029414          105 DYAFVDAD  112 (194)
Q Consensus       105 D~i~id~~  112 (194)
                      |+||+|++
T Consensus       165 DvV~lDPP  172 (410)
T 3ll7_A          165 DYIYVDPA  172 (410)
T ss_dssp             SEEEECCE
T ss_pred             eEEEECCC
Confidence            99999964

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.12  E-value=5.5e-11  Score=98.16  Aligned_cols=118  Identities=16%  Similarity=0.124  Sum_probs=90.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCC------------CCCEEEEEeCCcchHHhHHHHHHHcCCC
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP------------EDGQITAIDVNRETYEIGLPIIKKAGVD   77 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~------------~~~~v~~iD~~~~~~~~a~~~~~~~~~~   77 (194)
                      +.+....+|..++....+.+|+|.|||+|..+..+++.+.            ...+++++|+++.+++.|+.++...++.
T Consensus       155 TP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~  234 (445)
T 2okc_A          155 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  234 (445)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            3444566666666555667999999999999998887541            1367999999999999999999888875


Q ss_pred             C-cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccc--------------------cHHHHHHHHhcccCCeEEEE
Q 029414           78 H-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--------------------YCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        78 ~-~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~--------------------~~~~~~~~~~~L~~gG~lv~  135 (194)
                      . ++.+.++|+....        ..++||+|+.+++...                    ...+++.+.++|+|||.+++
T Consensus       235 ~~~~~i~~gD~l~~~--------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~  305 (445)
T 2okc_A          235 TDRSPIVCEDSLEKE--------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  305 (445)
T ss_dssp             SSCCSEEECCTTTSC--------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCCCEeeCCCCCCc--------ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence            3 6788999986531        1248999999865110                    14789999999999999876

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.11  E-value=1.1e-10  Score=93.39  Aligned_cols=99  Identities=9%  Similarity=0.106  Sum_probs=79.1

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..+..+|||+|||+|..+..+++.++ +.+++++|+ +.+++.+++      . ++++++.+|..+   .+       +.
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~---~~-------p~  246 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFT---SI-------PN  246 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTT---CC-------CC
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhccc------C-CCcEEEeccccC---CC-------CC
Confidence            34568999999999999999999887 789999999 988887764      1 369999999854   11       34


Q ss_pred             eeEEEEeCCcc-----ccHHHHHHHHhcccC---CeEEEEeccccc
Q 029414          104 FDYAFVDADKD-----NYCNYHERLMKLLKV---GGIAVYDNTLWG  141 (194)
Q Consensus       104 fD~i~id~~~~-----~~~~~~~~~~~~L~~---gG~lv~~~~~~~  141 (194)
                      ||+|++.....     ....+++.+.+.|+|   ||.+++.+...+
T Consensus       247 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  292 (352)
T 1fp2_A          247 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID  292 (352)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred             ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence            99999876522     223889999999999   999998776543

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.11  E-value=8.8e-11  Score=95.17  Aligned_cols=108  Identities=17%  Similarity=0.138  Sum_probs=79.9

Q ss_pred             HHHHHcCCCeEEEEcccccHHHHHHHhhCC-------------------------------------CCCEEEEEeCCcc
Q 029414           20 MLLRLVNAKKTIEIGVFTGYSLLLTALTIP-------------------------------------EDGQITAIDVNRE   62 (194)
Q Consensus        20 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~-------------------------------------~~~~v~~iD~~~~   62 (194)
                      .+....++.++||.+||+|..++..|....                                     ...+|+++|+++.
T Consensus       189 ~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~  268 (385)
T 3ldu_A          189 YLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEE  268 (385)
T ss_dssp             HTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHH
T ss_pred             HhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHH
Confidence            333334567899999999999999876532                                     1257999999999


Q ss_pred             hHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc-------ccHHHHHHHHhcccC--CeEE
Q 029414           63 TYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLMKLLKV--GGIA  133 (194)
Q Consensus        63 ~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~-------~~~~~~~~~~~~L~~--gG~l  133 (194)
                      +++.|++++..+++.+++++.++|+.+...        ..+||+|+++++..       ....+++.+.+.|++  |+.+
T Consensus       269 ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~  340 (385)
T 3ldu_A          269 SIDIARENAEIAGVDEYIEFNVGDATQFKS--------EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSY  340 (385)
T ss_dssp             HHHHHHHHHHHHTCGGGEEEEECCGGGCCC--------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEE
T ss_pred             HHHHHHHHHHHcCCCCceEEEECChhhcCc--------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEE
Confidence            999999999999988789999999977421        35899999998732       233445544445544  6655


Q ss_pred             EE
Q 029414          134 VY  135 (194)
Q Consensus       134 v~  135 (194)
                      .+
T Consensus       341 ~i  342 (385)
T 3ldu_A          341 YL  342 (385)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.10  E-value=2.4e-10  Score=92.52  Aligned_cols=114  Identities=8%  Similarity=0.010  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCC-------------------------------------CCEEEE
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-------------------------------------DGQITA   56 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-------------------------------------~~~v~~   56 (194)
                      .++.|-.+....+...++|.+||+|..++..|.....                                     ..++++
T Consensus       182 LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G  261 (384)
T 3ldg_A          182 MAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG  261 (384)
T ss_dssp             HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence            3444444444445678999999999999887764321                                     156999


Q ss_pred             EeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc-------cccHHHHHHHHhcccC
Q 029414           57 IDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKLLKV  129 (194)
Q Consensus        57 iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~-------~~~~~~~~~~~~~L~~  129 (194)
                      +|+++.+++.|++++..+++.+++++.++|+.+...        ..+||+|+++++.       .....+++.+.+.|++
T Consensus       262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~--------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~  333 (384)
T 3ldg_A          262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT--------NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP  333 (384)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC--------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc--------cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999998789999999977421        2589999999762       2334455555555554


Q ss_pred             --CeEEEE
Q 029414          130 --GGIAVY  135 (194)
Q Consensus       130 --gG~lv~  135 (194)
                        |+.+.+
T Consensus       334 ~~g~~~~i  341 (384)
T 3ldg_A          334 LKTWSQFI  341 (384)
T ss_dssp             CTTSEEEE
T ss_pred             CCCcEEEE
Confidence              766655

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.06  E-value=5.8e-10  Score=84.92  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=64.0

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      +.++..++.....+...+...++.+|||+|||+|..+..++...   .+++++|+++++++.+++++...   +++++++
T Consensus         9 gQ~fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~   82 (244)
T 1qam_A            9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDH---DNFQVLN   82 (244)
T ss_dssp             -CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTC---CSEEEEC
T ss_pred             CccccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccC---CCeEEEE
Confidence            34556666666666555555567899999999999999999873   69999999999999999987532   4899999


Q ss_pred             cchHHH
Q 029414           85 SEALSV   90 (194)
Q Consensus        85 ~d~~~~   90 (194)
                      +|+.+.
T Consensus        83 ~D~~~~   88 (244)
T 1qam_A           83 KDILQF   88 (244)
T ss_dssp             CCGGGC
T ss_pred             ChHHhC
Confidence            999764

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.05  E-value=1e-09  Score=85.09  Aligned_cols=114  Identities=10%  Similarity=0.049  Sum_probs=78.7

Q ss_pred             ccccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEE
Q 029414            4 LRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINF   82 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~   82 (194)
                      ++.++..++.....+...+...++.+|||||||+|..+..++...+. +++|+++|+++++++.++++.     .+++++
T Consensus        20 ~GQ~fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~   94 (279)
T 3uzu_A           20 FGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLEL   94 (279)
T ss_dssp             CSCCEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEE
T ss_pred             CCccccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEE
Confidence            34556677777777777776667889999999999999999987552 245999999999999999983     248999


Q ss_pred             EecchHHH-HHHHhhcCCCCCceeEEEEeCCccccHHHHHHHH
Q 029414           83 IESEALSV-LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  124 (194)
Q Consensus        83 ~~~d~~~~-~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~  124 (194)
                      +++|+.+. ++.+...  .....+.|+.+.+.......+..++
T Consensus        95 i~~D~~~~~~~~~~~~--~~~~~~~vv~NlPY~iss~il~~ll  135 (279)
T 3uzu_A           95 HAGDALTFDFGSIARP--GDEPSLRIIGNLPYNISSPLLFHLM  135 (279)
T ss_dssp             EESCGGGCCGGGGSCS--SSSCCEEEEEECCHHHHHHHHHHHG
T ss_pred             EECChhcCChhHhccc--ccCCceEEEEccCccccHHHHHHHH
Confidence            99999875 2332100  0002345666655333334443333

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.02  E-value=6.1e-10  Score=89.26  Aligned_cols=98  Identities=12%  Similarity=0.081  Sum_probs=78.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .+..+|||+|||+|..+..+++.++ +.+++++|+ +.+++.+++      . ++++++.+|..+   .+       +.|
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~---~~-------~~~  252 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK---SI-------PSA  252 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT---CC-------CCC
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC---CC-------CCc
Confidence            3668999999999999999999987 789999999 777776654      2 369999999865   21       359


Q ss_pred             eEEEEeCCc---cc--cHHHHHHHHhcccC---CeEEEEeccccc
Q 029414          105 DYAFVDADK---DN--YCNYHERLMKLLKV---GGIAVYDNTLWG  141 (194)
Q Consensus       105 D~i~id~~~---~~--~~~~~~~~~~~L~~---gG~lv~~~~~~~  141 (194)
                      |+|++....   .+  ...+++.+.+.|+|   ||.+++.+...+
T Consensus       253 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  297 (358)
T 1zg3_A          253 DAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISID  297 (358)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred             eEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence            999987652   22  34889999999999   999998766543

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.02  E-value=8.6e-10  Score=93.02  Aligned_cols=122  Identities=9%  Similarity=-0.003  Sum_probs=91.3

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCC-----------------CCEEEEEeCCcchHHhHHH
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-----------------DGQITAIDVNRETYEIGLP   69 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-----------------~~~v~~iD~~~~~~~~a~~   69 (194)
                      ++++ +....+|..++...+..+|+|.+||+|.+.+.++..+..                 ...++++|+++.++..|+.
T Consensus       151 fyTP-~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~  229 (541)
T 2ar0_A          151 YFTP-RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM  229 (541)
T ss_dssp             CCCC-HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHH
T ss_pred             eeCC-HHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHH
Confidence            4443 445566666665556679999999999998888765421                 1379999999999999999


Q ss_pred             HHHHcCCCC----cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccc-----------------cHHHHHHHHhccc
Q 029414           70 IIKKAGVDH----KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-----------------YCNYHERLMKLLK  128 (194)
Q Consensus        70 ~~~~~~~~~----~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~-----------------~~~~~~~~~~~L~  128 (194)
                      ++...+...    ++.+.++|+.......      .++||+|+.+++...                 ...++..+.++|+
T Consensus       230 nl~l~gi~~~~~~~~~I~~gDtL~~~~~~------~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk  303 (541)
T 2ar0_A          230 NCLLHDIEGNLDHGGAIRLGNTLGSDGEN------LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH  303 (541)
T ss_dssp             HHHTTTCCCBGGGTBSEEESCTTSHHHHT------SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEE
T ss_pred             HHHHhCCCccccccCCeEeCCCccccccc------ccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhC
Confidence            998887763    2788999987643221      368999999876211                 2368899999999


Q ss_pred             CCeEEEE
Q 029414          129 VGGIAVY  135 (194)
Q Consensus       129 ~gG~lv~  135 (194)
                      |||.+++
T Consensus       304 ~gGr~a~  310 (541)
T 2ar0_A          304 PGGRAAV  310 (541)
T ss_dssp             EEEEEEE
T ss_pred             CCCEEEE
Confidence            9998877

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.99  E-value=6.3e-10  Score=86.64  Aligned_cols=90  Identities=14%  Similarity=0.170  Sum_probs=66.9

Q ss_pred             HcCCCeEEEEcccc------cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEE-EecchHHHHHHHhh
Q 029414           24 LVNAKKTIEIGVFT------GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF-IESEALSVLDQLLK   96 (194)
Q Consensus        24 ~~~~~~vLeiG~G~------G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~-~~~d~~~~~~~~~~   96 (194)
                      ..++.+|||+|||+      |.  ..++...+++++|+++|+++.             ++ ++++ +++|..+..  +  
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~-~v~~~i~gD~~~~~--~--  120 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VS-DADSTLIGDCATVH--T--  120 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BC-SSSEEEESCGGGCC--C--
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CC-CCEEEEECccccCC--c--
Confidence            34567999999944      66  555666665789999999997             12 6788 999986531  1  


Q ss_pred             cCCCCCceeEEEEeCCcc--------------ccHHHHHHHHhcccCCeEEEEec
Q 029414           97 YSENEGSFDYAFVDADKD--------------NYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~~~--------------~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                          .++||+|+++....              .+..+++.+.+.|||||.+++..
T Consensus       121 ----~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          121 ----ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             ----SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                26799999975311              12478899999999999999963

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.97  E-value=2.1e-10  Score=90.18  Aligned_cols=95  Identities=9%  Similarity=0.018  Sum_probs=66.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeC----CcchHHhHHHHHHHcCCCCcEEEEec-chHHHHHHHhhcCCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV----NRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSEN  100 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~----~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~  100 (194)
                      ++.+|||+|||+|.++..+++.    ++|+++|+    ++..++...  .+..+ .++++++++ |..+. +        
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l-~--------  145 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFI-P--------  145 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTS-C--------
T ss_pred             CCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccC-C--------
Confidence            4579999999999999999985    48999999    443332111  11111 147999988 77542 1        


Q ss_pred             CCceeEEEEeCCcc--c-------cHHHHHHHHhcccCCeEEEEe
Q 029414          101 EGSFDYAFVDADKD--N-------YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       101 ~~~fD~i~id~~~~--~-------~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .++||+|++|....  .       ....++.+.+.|+|||.+++.
T Consensus       146 ~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          146 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            36899999986521  1       114677888999999999984

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.96  E-value=1.6e-10  Score=89.63  Aligned_cols=97  Identities=7%  Similarity=-0.008  Sum_probs=68.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHH-HHcCCCCcEEEE--ecchHHHHHHHhhcCCCCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII-KKAGVDHKINFI--ESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~~~~~~~~~~~~~~  102 (194)
                      ++.+|||+|||+|.++..++..    ++|+++|+++ +...+++.. .......++.++  ++|+.+. +        .+
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~--------~~  147 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM-E--------PF  147 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC-C--------CC
T ss_pred             CCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC-C--------CC
Confidence            4679999999999999999985    5899999998 433332210 000111268888  8888662 1        36


Q ss_pred             ceeEEEEeCCc--cc-------cHHHHHHHHhcccCCe--EEEEe
Q 029414          103 SFDYAFVDADK--DN-------YCNYHERLMKLLKVGG--IAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~--~~-------~~~~~~~~~~~L~~gG--~lv~~  136 (194)
                      +||+|++|...  ..       ...+++.+.+.|+|||  .+++.
T Consensus       148 ~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~  192 (276)
T 2wa2_A          148 QADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK  192 (276)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred             CcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence            89999998641  11       1136788889999999  88884

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.96  E-value=1.6e-10  Score=89.13  Aligned_cols=98  Identities=11%  Similarity=-0.010  Sum_probs=68.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHH-HHcCCCCcEEEE--ecchHHHHHHHhhcCCCCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII-KKAGVDHKINFI--ESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~~~~~~~~~~~~~~  102 (194)
                      ++.+|||+|||+|.++..++..    ++|+++|+++ +...+++.. .......++.++  ++|+.+. +        .+
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~--------~~  139 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL-P--------VE  139 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS-C--------CC
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC-C--------CC
Confidence            4679999999999999999875    5899999998 433222110 000011168888  8888652 1        36


Q ss_pred             ceeEEEEeCCc--cc-------cHHHHHHHHhcccCCe--EEEEec
Q 029414          103 SFDYAFVDADK--DN-------YCNYHERLMKLLKVGG--IAVYDN  137 (194)
Q Consensus       103 ~fD~i~id~~~--~~-------~~~~~~~~~~~L~~gG--~lv~~~  137 (194)
                      +||+|++|...  ..       ...+++.+.+.|+|||  .+++..
T Consensus       140 ~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          140 RTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            89999998641  11       1136788889999999  888853

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.95  E-value=2.8e-11  Score=92.17  Aligned_cols=117  Identities=15%  Similarity=0.120  Sum_probs=82.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      .++.+.+.....+...+...++.+|||+|||+|..+..++..   +.+++++|+++++++.+++++.  . .++++++++
T Consensus         9 q~fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~---~~~v~~id~~~~~~~~a~~~~~--~-~~~v~~~~~   82 (245)
T 1yub_A            9 QNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK--L-NTRVTLIHQ   82 (245)
T ss_dssp             CCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT--T-CSEEEECCS
T ss_pred             CCCCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHhc--c-CCceEEEEC
Confidence            444555555555555555556779999999999999999987   3699999999999999988765  2 358999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccc--------------cHHHH----HHHHhcccCCeEEEE
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDN--------------YCNYH----ERLMKLLKVGGIAVY  135 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~--------------~~~~~----~~~~~~L~~gG~lv~  135 (194)
                      |+.+..  +.    ..++| .|+.+.+...              ....+    +.+.++|+|||.+.+
T Consensus        83 D~~~~~--~~----~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v  143 (245)
T 1yub_A           83 DILQFQ--FP----NKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL  143 (245)
T ss_dssp             CCTTTT--CC----CSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred             ChhhcC--cc----cCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence            987642  10    02568 6777654211              11122    557789999998765

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.93  E-value=4e-09  Score=80.50  Aligned_cols=119  Identities=15%  Similarity=0.104  Sum_probs=83.1

Q ss_pred             ccccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414            4 LRAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   83 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~   83 (194)
                      ++.++..++.....+...+...++.+|||+|||+|..+..++.. + ..+++++|+++.+++.++++    . ..+++++
T Consensus         9 ~GQnfl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~----~-~~~v~~i   81 (249)
T 3ftd_A            9 FGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSI----G-DERLEVI   81 (249)
T ss_dssp             CCSSCEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS----C-CTTEEEE
T ss_pred             ccccccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc----c-CCCeEEE
Confidence            34556666766666666666667789999999999999999986 2 47999999999999999876    2 2489999


Q ss_pred             ecchHHH-HHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcc--cCCeEEEEe
Q 029414           84 ESEALSV-LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL--KVGGIAVYD  136 (194)
Q Consensus        84 ~~d~~~~-~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L--~~gG~lv~~  136 (194)
                      ++|+.+. ++..      .+.| .|+.+.+.......+..+....  -+.+++++.
T Consensus        82 ~~D~~~~~~~~~------~~~~-~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Q  130 (249)
T 3ftd_A           82 NEDASKFPFCSL------GKEL-KVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQ  130 (249)
T ss_dssp             CSCTTTCCGGGS------CSSE-EEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             EcchhhCChhHc------cCCc-EEEEECchhccHHHHHHHHhcCCCCceEEEEEe
Confidence            9999774 2221      1233 6677666544445555554432  345666664

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.89  E-value=1.9e-09  Score=90.85  Aligned_cols=119  Identities=10%  Similarity=0.102  Sum_probs=87.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCC--------------CCEEEEEeCCcchHHhHHHHHHHcC
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE--------------DGQITAIDVNRETYEIGLPIIKKAG   75 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~--------------~~~v~~iD~~~~~~~~a~~~~~~~~   75 (194)
                      +.+.+..+|..++...+ .+|+|.+||+|...+..+..+..              ...++++|+++.++..|+.++...+
T Consensus       229 TP~~Vv~lmv~ll~p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g  307 (544)
T 3khk_A          229 TPKSIVTLIVEMLEPYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG  307 (544)
T ss_dssp             CCHHHHHHHHHHHCCCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHhcCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC
Confidence            44556667776665433 49999999999988877544310              3589999999999999999999888


Q ss_pred             CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccc--------------------------------cHHHHHHH
Q 029414           76 VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--------------------------------YCNYHERL  123 (194)
Q Consensus        76 ~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~--------------------------------~~~~~~~~  123 (194)
                      +..++.+.++|+......      ...+||+|+.+++...                                ...++..+
T Consensus       308 i~~~i~i~~gDtL~~~~~------~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~  381 (544)
T 3khk_A          308 IDFNFGKKNADSFLDDQH------PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHM  381 (544)
T ss_dssp             CCCBCCSSSCCTTTSCSC------TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHH
T ss_pred             CCcccceeccchhcCccc------ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHH
Confidence            876665588887543110      1368999999866211                                12688999


Q ss_pred             HhcccCCeEEEE
Q 029414          124 MKLLKVGGIAVY  135 (194)
Q Consensus       124 ~~~L~~gG~lv~  135 (194)
                      .++|+|||.+++
T Consensus       382 l~~Lk~gGr~ai  393 (544)
T 3khk_A          382 LYHLAPTGSMAL  393 (544)
T ss_dssp             HHTEEEEEEEEE
T ss_pred             HHHhccCceEEE
Confidence            999999999766

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.85  E-value=7.3e-09  Score=88.28  Aligned_cols=100  Identities=12%  Similarity=0.056  Sum_probs=76.4

Q ss_pred             CCeEEEEcccccHH---HHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           27 AKKTIEIGVFTGYS---LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        27 ~~~vLeiG~G~G~~---~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ...|+|+|||+|-.   ++..++......+|+++|-++ +...+++....+++.++|+++++|..++  ++      .++
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev--~L------PEK  428 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREW--VA------PEK  428 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTC--CC------SSC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceec--cC------Ccc
Confidence            35799999999987   444444333234799999997 6678888899999999999999999875  22      478


Q ss_pred             eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEE
Q 029414          104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +|+|+....     .+...+.+....+.|||||+++=
T Consensus       429 VDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiP  465 (637)
T 4gqb_A          429 ADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIP  465 (637)
T ss_dssp             EEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEES
T ss_pred             cCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEcc
Confidence            999986532     34556777778899999999763

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.84  E-value=8.9e-09  Score=78.72  Aligned_cols=107  Identities=12%  Similarity=-0.004  Sum_probs=72.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      +.+++.....+...+...++.+|||||||+|..|. ++. .+ ..+|+++|+++++++.+++++...   ++++++++|+
T Consensus         3 fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~   76 (252)
T 1qyr_A            3 FLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDA   76 (252)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCG
T ss_pred             CcCCHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC---CceEEEECch
Confidence            44566666666666666677899999999999999 654 22 234999999999999999877542   3899999999


Q ss_pred             HHH-HHHHhhcCCCCCceeEEEEeCCccccHHHHHHH
Q 029414           88 LSV-LDQLLKYSENEGSFDYAFVDADKDNYCNYHERL  123 (194)
Q Consensus        88 ~~~-~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~  123 (194)
                      .+. ++.....   .+..|.|+.+.+.......+..+
T Consensus        77 ~~~~~~~~~~~---~~~~~~vvsNlPY~i~~~il~~l  110 (252)
T 1qyr_A           77 MTFNFGELAEK---MGQPLRVFGNLPYNISTPLMFHL  110 (252)
T ss_dssp             GGCCHHHHHHH---HTSCEEEEEECCTTTHHHHHHHH
T ss_pred             hhCCHHHhhcc---cCCceEEEECCCCCccHHHHHHH
Confidence            874 3332100   02357777776543333344333

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.83  E-value=2.5e-08  Score=83.98  Aligned_cols=121  Identities=14%  Similarity=0.080  Sum_probs=92.1

Q ss_pred             CCHHHHHHHHHHHH----HcCCCeEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEE
Q 029414           10 TAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVD-HKINF   82 (194)
Q Consensus        10 ~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~   82 (194)
                      +.+.+..+|..++.    .....+|+|.+||+|...+.++..+.  ....++|+|+++.++..|+.++...+.. +++.+
T Consensus       201 TP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I  280 (542)
T 3lkd_A          201 TPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFL  280 (542)
T ss_dssp             CCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             ccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccce
Confidence            44556777777776    33567999999999999888888763  2568999999999999999999888875 47899


Q ss_pred             EecchHHHH-HHHhhcCCCCCceeEEEEeCCcc-----------c---------------cHHHHHHHHhccc-CCeEEE
Q 029414           83 IESEALSVL-DQLLKYSENEGSFDYAFVDADKD-----------N---------------YCNYHERLMKLLK-VGGIAV  134 (194)
Q Consensus        83 ~~~d~~~~~-~~~~~~~~~~~~fD~i~id~~~~-----------~---------------~~~~~~~~~~~L~-~gG~lv  134 (194)
                      .++|+...- +..     ...+||+|+.+++..           +               ...++..+.++|+ +||.+.
T Consensus       281 ~~gDtL~~d~p~~-----~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a  355 (542)
T 3lkd_A          281 HNADTLDEDWPTQ-----EPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMA  355 (542)
T ss_dssp             EESCTTTSCSCCS-----SCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEE
T ss_pred             Eecceeccccccc-----ccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEE
Confidence            999986530 111     146899999886510           0               1247899999999 999986


Q ss_pred             E
Q 029414          135 Y  135 (194)
Q Consensus       135 ~  135 (194)
                      +
T Consensus       356 ~  356 (542)
T 3lkd_A          356 I  356 (542)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.79  E-value=9.7e-09  Score=89.09  Aligned_cols=117  Identities=14%  Similarity=0.120  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhC---C--------------------------------------CCC
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---P--------------------------------------EDG   52 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~---~--------------------------------------~~~   52 (194)
                      .++.|-.++...++..+||.+||+|..++..|...   +                                      +..
T Consensus       178 LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~  257 (703)
T 3v97_A          178 LAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS  257 (703)
T ss_dssp             HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence            33444444433456789999999999998877642   1                                      125


Q ss_pred             EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc-------ccHHHHH---H
Q 029414           53 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHE---R  122 (194)
Q Consensus        53 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~-------~~~~~~~---~  122 (194)
                      +++++|+++.+++.|++|+..+++.+.+++.++|+.+.....     ..++||+|+++++..       ....+++   .
T Consensus       258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~-----~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~  332 (703)
T 3v97_A          258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPL-----PKGPYGTVLSNPPYGERLDSEPALIALHSLLGR  332 (703)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC-----TTCCCCEEEECCCCCC---CCHHHHHHHHHHHH
T ss_pred             cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccc-----ccCCCCEEEeCCCccccccchhHHHHHHHHHHH
Confidence            899999999999999999999999878999999997742111     123799999997621       2223333   3


Q ss_pred             HHhcccCCeEEEE
Q 029414          123 LMKLLKVGGIAVY  135 (194)
Q Consensus       123 ~~~~L~~gG~lv~  135 (194)
                      .++.+.|||.+++
T Consensus       333 ~lk~~~~g~~~~i  345 (703)
T 3v97_A          333 IMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHCTTCEEEE
T ss_pred             HHHhhCCCCeEEE
Confidence            3455567887765

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.77  E-value=2.1e-08  Score=85.78  Aligned_cols=120  Identities=11%  Similarity=-0.046  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHcC----CCeEEEEcccccHHHHHHHhhC---C---------CCCEEEEEeCCcchHHhHHHHHHHcCC
Q 029414           13 DAGQLMAMLLRLVN----AKKTIEIGVFTGYSLLLTALTI---P---------EDGQITAIDVNRETYEIGLPIIKKAGV   76 (194)
Q Consensus        13 ~~~~~l~~l~~~~~----~~~vLeiG~G~G~~~~~la~~~---~---------~~~~v~~iD~~~~~~~~a~~~~~~~~~   76 (194)
                      +..++...+....+    .+.|||+|||+|-.+...+.+.   .         ...+|+++|-++.+....+.... +++
T Consensus       392 Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~  470 (745)
T 3ua3_A          392 YGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW  470 (745)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT
T ss_pred             HHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC
Confidence            44455555544432    4689999999999864322211   0         13499999999977766555544 778


Q ss_pred             CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEE
Q 029414           77 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        77 ~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      .++|+++++|..++-.....  +..++.|+|+....     .+-..+.+..+.+.|+|||+++=
T Consensus       471 ~d~VtVI~gd~eev~lp~~~--~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP  532 (745)
T 3ua3_A          471 KRRVTIIESDMRSLPGIAKD--RGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIP  532 (745)
T ss_dssp             TTCSEEEESCGGGHHHHHHH--TTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred             CCeEEEEeCchhhccccccc--CCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEEC
Confidence            88899999999887321000  12378999987643     23345677777899999998763

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.75  E-value=8.3e-08  Score=83.35  Aligned_cols=121  Identities=12%  Similarity=0.057  Sum_probs=82.5

Q ss_pred             CCCCHHHHHHHHHHHH--Hc----CCCeEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHhH--HHHHHH----
Q 029414            8 MGTAPDAGQLMAMLLR--LV----NAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIG--LPIIKK----   73 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~--~~----~~~~vLeiG~G~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a--~~~~~~----   73 (194)
                      +-+.+....+|..++.  ..    .+.+|||.|||+|...+.++..++  ...+++++|+++.+++.|  +.++..    
T Consensus       297 FYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~Ll  376 (878)
T 3s1s_A          297 VPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLV  376 (878)
T ss_dssp             SSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTC
T ss_pred             EcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhh
Confidence            3455667777776632  11    356999999999999999988764  135799999999999999  444433    


Q ss_pred             cCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--------------------------------ccHHHHH
Q 029414           74 AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------------------------------NYCNYHE  121 (194)
Q Consensus        74 ~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--------------------------------~~~~~~~  121 (194)
                      .+.. ...+...|.......      ..++||+|+.+++..                                .+..+++
T Consensus       377 hGi~-~~~I~~dD~L~~~~~------~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe  449 (878)
T 3s1s_A          377 SSNN-APTITGEDVCSLNPE------DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLE  449 (878)
T ss_dssp             BTTB-CCEEECCCGGGCCGG------GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHH
T ss_pred             cCCC-cceEEecchhccccc------ccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHH
Confidence            2222 235555565442111      136899999987620                                0234678


Q ss_pred             HHHhcccCCeEEEE
Q 029414          122 RLMKLLKVGGIAVY  135 (194)
Q Consensus       122 ~~~~~L~~gG~lv~  135 (194)
                      .+.++|++||.+++
T Consensus       450 ~Al~lLKpGGrLAf  463 (878)
T 3s1s_A          450 LVTELVQDGTVISA  463 (878)
T ss_dssp             HHHHHSCTTCEEEE
T ss_pred             HHHHhcCCCcEEEE
Confidence            88999999999887

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.70  E-value=6.8e-09  Score=74.70  Aligned_cols=88  Identities=9%  Similarity=0.086  Sum_probs=67.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.+|||+|||.                 +++|+++.+++.+++++.     .++++..+|..+.....    ...++|
T Consensus        11 ~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~----~~~~~f   64 (176)
T 2ld4_A           11 SAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSA----HKESSF   64 (176)
T ss_dssp             CTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGC----CCSSCE
T ss_pred             CCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCcccc----CCCCCE
Confidence            4678999999975                 238999999999998753     24889999987642200    014789


Q ss_pred             eEEEEeCC---c-cccHHHHHHHHhcccCCeEEEEecc
Q 029414          105 DYAFVDAD---K-DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       105 D~i~id~~---~-~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      |+|++...   . .+...+++++.+.|||||.+++.+.
T Consensus        65 D~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           65 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             EEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence            99998643   2 5678999999999999999999543

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.68  E-value=3e-08  Score=76.35  Aligned_cols=112  Identities=13%  Similarity=0.152  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      ...++..+.. .++..+||+-+|+|..++.+...   ..+++.+|.+++..+..+++++.   .++++++.+|+.+.+..
T Consensus        80 l~~yf~~l~~-~n~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~  152 (283)
T 2oo3_A           80 FLEYISVIKQ-INLNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNA  152 (283)
T ss_dssp             GHHHHHHHHH-HSSSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHH-hcCCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHH
Confidence            3455555555 46678999999999999998873   57999999999999999998864   35899999999888776


Q ss_pred             HhhcCCCCCceeEEEEeCCcc---ccHHHHHHHHh--cccCCeEEEE
Q 029414           94 LLKYSENEGSFDYAFVDADKD---NYCNYHERLMK--LLKVGGIAVY  135 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~~---~~~~~~~~~~~--~L~~gG~lv~  135 (194)
                      +.+.   ..+||+||+|++.+   .+...++.+.+  .+.|+|++++
T Consensus       153 l~~~---~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          153 LLPP---PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             HCSC---TTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             hcCC---CCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence            6432   34799999999743   45555555543  5678999888

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.61  E-value=1.9e-07  Score=71.84  Aligned_cols=83  Identities=7%  Similarity=0.037  Sum_probs=65.8

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++..+||++||.|..+..+++.   +++|+++|.++++++.+++ +..    ++++++++++.++...+...  ..++
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~--g~~~   89 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAAL--GVER   89 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHT--TCSC
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHc--CCCC
Confidence            446689999999999999999986   6799999999999999998 643    48999999998764333221  1257


Q ss_pred             eeEEEEeCCcccc
Q 029414          104 FDYAFVDADKDNY  116 (194)
Q Consensus       104 fD~i~id~~~~~~  116 (194)
                      +|.|++|...+.+
T Consensus        90 vDgIL~DLGvSS~  102 (285)
T 1wg8_A           90 VDGILADLGVSSF  102 (285)
T ss_dssp             EEEEEEECSCCHH
T ss_pred             cCEEEeCCccccc
Confidence            9999999764443

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.47  E-value=5.9e-07  Score=62.24  Aligned_cols=84  Identities=8%  Similarity=0.038  Sum_probs=58.2

Q ss_pred             CCCeEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .+.+|||+|||.| ..+..|++..  +..|+++|+++..++                ++..|..+....+      -+.|
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~----------------~v~dDiF~P~~~~------Y~~~   90 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG----------------IVRDDITSPRMEI------YRGA   90 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT----------------EECCCSSSCCHHH------HTTE
T ss_pred             CCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc----------------eEEccCCCCcccc------cCCc
Confidence            4679999999999 6999999742  568999999997776                6666665532222      1589


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      |+|+.-.++.+....+-.+.+..  |.-+++
T Consensus        91 DLIYsirPP~El~~~i~~lA~~v--~adliI  119 (153)
T 2k4m_A           91 ALIYSIRPPAEIHSSLMRVADAV--GARLII  119 (153)
T ss_dssp             EEEEEESCCTTTHHHHHHHHHHH--TCEEEE
T ss_pred             CEEEEcCCCHHHHHHHHHHHHHc--CCCEEE
Confidence            99976666555555554454443  455555

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.29  E-value=2.8e-06  Score=66.85  Aligned_cols=84  Identities=17%  Similarity=0.158  Sum_probs=65.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++..++|..+|.|..+..+++.++++++|+++|.++++++.++ ++   . .++++++++++.++...+... .-.+++
T Consensus        56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~-~~Rv~lv~~nF~~l~~~L~~~-g~~~~v  129 (347)
T 3tka_A           56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---D-DPRFSIIHGPFSALGEYVAER-DLIGKI  129 (347)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---C-CTTEEEEESCGGGHHHHHHHT-TCTTCE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---c-CCcEEEEeCCHHHHHHHHHhc-CCCCcc
Confidence            35679999999999999999998876899999999999999884 33   2 358999999987765444321 001369


Q ss_pred             eEEEEeCCcc
Q 029414          105 DYAFVDADKD  114 (194)
Q Consensus       105 D~i~id~~~~  114 (194)
                      |.|++|-..+
T Consensus       130 DgILfDLGVS  139 (347)
T 3tka_A          130 DGILLDLGVS  139 (347)
T ss_dssp             EEEEEECSCC
T ss_pred             cEEEECCccC
Confidence            9999996543

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.29  E-value=1.3e-06  Score=73.56  Aligned_cols=123  Identities=13%  Similarity=0.118  Sum_probs=87.5

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCC------------CCEEEEEeCCcchHHhHHHHHHHc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE------------DGQITAIDVNRETYEIGLPIIKKA   74 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~------------~~~v~~iD~~~~~~~~a~~~~~~~   74 (194)
                      ++ +.+.+..+|..++....+.+|+|-.||+|.+.+.....+..            ...++|+|+++.....|+-++--+
T Consensus       199 fy-TP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lh  277 (530)
T 3ufb_A          199 FY-TPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLH  277 (530)
T ss_dssp             CC-CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHH
T ss_pred             EC-CcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhc
Confidence            44 44567778888887777789999999999988776554321            246999999999999999998888


Q ss_pred             CCCCcEEEEecchHHHH-HHHhhcCCCCCceeEEEEeCCcc-------------------ccHHHHHHHHhccc------
Q 029414           75 GVDHKINFIESEALSVL-DQLLKYSENEGSFDYAFVDADKD-------------------NYCNYHERLMKLLK------  128 (194)
Q Consensus        75 ~~~~~v~~~~~d~~~~~-~~~~~~~~~~~~fD~i~id~~~~-------------------~~~~~~~~~~~~L~------  128 (194)
                      +.. ...+..+|+.... ...    ....+||+|+.+++..                   ....++.++++.|+      
T Consensus       278 g~~-~~~I~~~dtL~~~~~~~----~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l  352 (530)
T 3ufb_A          278 GLE-YPRIDPENSLRFPLREM----GDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGS  352 (530)
T ss_dssp             TCS-CCEEECSCTTCSCGGGC----CGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSS
T ss_pred             CCc-cccccccccccCchhhh----cccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhcc
Confidence            875 4567788875421 111    1125799999987621                   12356778888876      


Q ss_pred             -CCeEEEE
Q 029414          129 -VGGIAVY  135 (194)
Q Consensus       129 -~gG~lv~  135 (194)
                       +||.+.+
T Consensus       353 ~~gGr~av  360 (530)
T 3ufb_A          353 DNGGRAAV  360 (530)
T ss_dssp             SSCCEEEE
T ss_pred             CCCceEEE
Confidence             6888766

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.18  E-value=9.7e-06  Score=64.75  Aligned_cols=70  Identities=7%  Similarity=0.148  Sum_probs=53.5

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++.++||+||+.|.+|..+++.   +++|++||+.+ +...    +.  . .++|+++++|+.+..+.       .++|
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~-l~~~----l~--~-~~~V~~~~~d~~~~~~~-------~~~~  271 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP-MAQS----LM--D-TGQVTWLREDGFKFRPT-------RSNI  271 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC-CCHH----HH--T-TTCEEEECSCTTTCCCC-------SSCE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh-cChh----hc--c-CCCeEEEeCccccccCC-------CCCc
Confidence            46789999999999999999885   67999999865 2221    11  1 24899999998765322       3679


Q ss_pred             eEEEEeCC
Q 029414          105 DYAFVDAD  112 (194)
Q Consensus       105 D~i~id~~  112 (194)
                      |+|++|..
T Consensus       272 D~vvsDm~  279 (375)
T 4auk_A          272 SWMVCDMV  279 (375)
T ss_dssp             EEEEECCS
T ss_pred             CEEEEcCC
Confidence            99999976

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=98.16  E-value=5e-06  Score=66.30  Aligned_cols=82  Identities=9%  Similarity=0.005  Sum_probs=64.9

Q ss_pred             ccccCCCCHHHHHHHHHHHHHcC------CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC
Q 029414            4 LRAMMGTAPDAGQLMAMLLRLVN------AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD   77 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~~------~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~   77 (194)
                      ++..+..++....-+...+...+      ...|||||.|.|..|..|+.... ..+++++|+++..+...++.+ .   .
T Consensus        30 lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~---~  104 (353)
T 1i4w_A           30 YGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E---G  104 (353)
T ss_dssp             GGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T---T
T ss_pred             CCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c---C
Confidence            34566777777777776666543      47899999999999999998532 458999999999998888876 2   2


Q ss_pred             CcEEEEecchHHH
Q 029414           78 HKINFIESEALSV   90 (194)
Q Consensus        78 ~~v~~~~~d~~~~   90 (194)
                      ++++++.+|+.++
T Consensus       105 ~~l~ii~~D~l~~  117 (353)
T 1i4w_A          105 SPLQILKRDPYDW  117 (353)
T ss_dssp             SSCEEECSCTTCH
T ss_pred             CCEEEEECCccch
Confidence            4899999999765

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.06  E-value=7.7e-06  Score=70.86  Aligned_cols=110  Identities=12%  Similarity=0.033  Sum_probs=75.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCcchHHhHHHHH--------------HHcC-----
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-------PE----DGQITAIDVNRETYEIGLPII--------------KKAG-----   75 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-------~~----~~~v~~iD~~~~~~~~a~~~~--------------~~~~-----   75 (194)
                      +.-+|+|+|.|+|.+.+.+.+..       |.    ..+++++|..|-..+.+++.+              ..+.     
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            34589999999999888775543       11    257999999775555554422              2221     


Q ss_pred             -----CC-C--cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcccc------HHHHHHHHhcccCCeEEEEec
Q 029414           76 -----VD-H--KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY------CNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        76 -----~~-~--~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~------~~~~~~~~~~L~~gG~lv~~~  137 (194)
                           ++ +  .++++.||+.+.++++...  ....+|.+|+|+..+..      ..++..+.++++|||.+....
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~--~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDS--LNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGG--GTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccc--cCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence                 11 1  4678899999988775210  02679999999874433      788899999999999988743

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.04  E-value=3.6e-06  Score=64.42  Aligned_cols=100  Identities=14%  Similarity=0.120  Sum_probs=61.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      +..+|||+|||.|.++...+...+ ...++++|+.-+........ ...+  .++..+.++... . .+     ..++||
T Consensus        74 ~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~dv-~-~l-----~~~~~D  142 (277)
T 3evf_A           74 LEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKTDI-H-RL-----EPVKCD  142 (277)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSCCT-T-TS-----CCCCCS
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCccccccc-CcCC--CCeEEEecccee-h-hc-----CCCCcc
Confidence            456899999999999999887644 45788888764321110000 0001  134444554311 1 11     246899


Q ss_pred             EEEEeCCcc----c-----cHHHHHHHHhcccCC-eEEEEe
Q 029414          106 YAFVDADKD----N-----YCNYHERLMKLLKVG-GIAVYD  136 (194)
Q Consensus       106 ~i~id~~~~----~-----~~~~~~~~~~~L~~g-G~lv~~  136 (194)
                      +|++|..+.    .     ....++.+.+.|+|| |.+++.
T Consensus       143 lVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K  183 (277)
T 3evf_A          143 TLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK  183 (277)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence            999997422    1     113357778999999 999994

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.94  E-value=9.6e-05  Score=57.62  Aligned_cols=105  Identities=15%  Similarity=0.213  Sum_probs=66.6

Q ss_pred             CCeEEEEcccccHHHHHHHh---hCCCCC--EEEEEeCCc--------chHH-hHHHHHHHcC-C-CCc--EEEEecchH
Q 029414           27 AKKTIEIGVFTGYSLLLTAL---TIPEDG--QITAIDVNR--------ETYE-IGLPIIKKAG-V-DHK--INFIESEAL   88 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~---~~~~~~--~v~~iD~~~--------~~~~-~a~~~~~~~~-~-~~~--v~~~~~d~~   88 (194)
                      .-+|||+|-|+|.+.+....   ...+..  +++++|..+        +... ..+....... . ..+  .++..||+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            35899999999997654322   222244  456677533        1112 2222222221 1 123  467889999


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCcc--c----cHHHHHHHHhcccCCeEEEEe
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKD--N----YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~--~----~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +.++++.     ...||++|.|+..+  +    ...+|+.+.++++|||+++..
T Consensus       177 ~~l~~l~-----~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTY  225 (308)
T 3vyw_A          177 KRIKEVE-----NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSY  225 (308)
T ss_dssp             HHGGGCC-----SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEES
T ss_pred             HHHhhhc-----ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEE
Confidence            9887761     34799999998521  1    257899999999999999874

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.91  E-value=4.1e-06  Score=63.36  Aligned_cols=94  Identities=13%  Similarity=0.047  Sum_probs=59.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCC--C-CCEEEEEe--CCcchHHhHHHHHHHcCCCCcEEEEec-chHHHHHHHhhcCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIP--E-DGQITAID--VNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE   99 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~--~-~~~v~~iD--~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~   99 (194)
                      ++.+|||+||+.|.++.+.+...+  . .+.++++|  +.|-...       ..++ +-+++.++ |+.+.         
T Consensus        73 pg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~-------~~Gv-~~i~~~~G~Df~~~---------  135 (269)
T 2px2_A           73 PIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ-------SYGW-NIVTMKSGVDVFYK---------  135 (269)
T ss_dssp             CCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC-------STTG-GGEEEECSCCGGGS---------
T ss_pred             CCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc-------CCCc-eEEEeeccCCccCC---------
Confidence            567999999999999999998622  1 24455555  2221000       0111 13466667 88762         


Q ss_pred             CCCceeEEEEeCCcc---------ccHHHHHHHHhcccCCe-EEEEe
Q 029414          100 NEGSFDYAFVDADKD---------NYCNYHERLMKLLKVGG-IAVYD  136 (194)
Q Consensus       100 ~~~~fD~i~id~~~~---------~~~~~~~~~~~~L~~gG-~lv~~  136 (194)
                      +..++|+|++|..+.         ....+++.+.+.|+||| .+++-
T Consensus       136 ~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK  182 (269)
T 2px2_A          136 PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK  182 (269)
T ss_dssp             CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence            135899999996521         11235777789999999 88873

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.89  E-value=3.9e-06  Score=64.28  Aligned_cols=101  Identities=11%  Similarity=-0.005  Sum_probs=63.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .+..+|||+|||.|.++...+...+ ...++++|+.......+... ...+  .++..+..+.. . ..+     ..+++
T Consensus        89 k~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~d-v-~~l-----~~~~~  157 (282)
T 3gcz_A           89 KPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTD-V-FNM-----EVIPG  157 (282)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCC-G-GGS-----CCCCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcc-h-hhc-----CCCCc
Confidence            3556999999999999999987654 56789999875432222110 0011  13333332221 1 111     14789


Q ss_pred             eEEEEeCCcc---------ccHHHHHHHHhcccCC--eEEEEe
Q 029414          105 DYAFVDADKD---------NYCNYHERLMKLLKVG--GIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~---------~~~~~~~~~~~~L~~g--G~lv~~  136 (194)
                      |+|++|..+.         .....++.+.+.|+||  |.+++-
T Consensus       158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K  200 (282)
T 3gcz_A          158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK  200 (282)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence            9999997532         1123467777899999  999984

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.77  E-value=9.4e-05  Score=57.58  Aligned_cols=57  Identities=12%  Similarity=0.106  Sum_probs=46.2

Q ss_pred             HHHHHHHHH--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC
Q 029414           16 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG   75 (194)
Q Consensus        16 ~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   75 (194)
                      +++..++..  .++..|||++||+|..++..+..   +.+++++|+++++++.|++++....
T Consensus       223 ~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          223 ELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            344444432  46789999999999999998875   5699999999999999999998754

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.66  E-value=2.5e-05  Score=60.28  Aligned_cols=99  Identities=11%  Similarity=0.101  Sum_probs=61.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~~f  104 (194)
                      +.++|||+||+.|.++-.+++..+ ...|+++|+.......... ....+. +.+.+..+ |..    .+     ..+++
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~----~l-----~~~~~  148 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVF----TM-----PTEPS  148 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTT----TS-----CCCCC
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEecccccccccc-ccccCC-ceEEeecCceee----ec-----CCCCc
Confidence            567999999999999999998654 4578899986532111000 000010 12333322 211    11     14689


Q ss_pred             eEEEEeCCcc---------ccHHHHHHHHhcccCC-eEEEEe
Q 029414          105 DYAFVDADKD---------NYCNYHERLMKLLKVG-GIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~---------~~~~~~~~~~~~L~~g-G~lv~~  136 (194)
                      |+|++|..+.         .....++.+.+.|+|| |.+++-
T Consensus       149 DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          149 DTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             CEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            9999997532         1123467778999999 999985

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.65  E-value=9.8e-05  Score=55.18  Aligned_cols=98  Identities=10%  Similarity=0.056  Sum_probs=67.0

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~~  103 (194)
                      .+..+|+|+||+.|.++.+.+.... ..+|+++|+-+.-.+.-+ .++..|.+ .+++..+ |....         ...+
T Consensus        77 ~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~P~-~~~s~gwn-~v~fk~gvDv~~~---------~~~~  144 (267)
T 3p8z_A           77 IPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEEPV-PMSTYGWN-IVKLMSGKDVFYL---------PPEK  144 (267)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCCC-CCCCTTTT-SEEEECSCCGGGC---------CCCC
T ss_pred             CCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccCcc-hhhhcCcC-ceEEEeccceeec---------CCcc
Confidence            3567999999999999999988765 568999998664332100 01223444 7999998 86332         1357


Q ss_pred             eeEEEEeCCcc---------ccHHHHHHHHhcccCCeEEEE
Q 029414          104 FDYAFVDADKD---------NYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       104 fD~i~id~~~~---------~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +|.|+||....         .....++.+.+.|++ |-+++
T Consensus       145 ~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~  184 (267)
T 3p8z_A          145 CDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI  184 (267)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred             ccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence            99999996532         223456777788888 66666

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.60  E-value=0.00045  Score=59.66  Aligned_cols=108  Identities=15%  Similarity=0.057  Sum_probs=70.8

Q ss_pred             CeEEEEcccccHHHHHHHhhC-------C----CCCEEEEEeCCcchHHhHH--------------HHHHHcCCC-----
Q 029414           28 KKTIEIGVFTGYSLLLTALTI-------P----EDGQITAIDVNRETYEIGL--------------PIIKKAGVD-----   77 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~-------~----~~~~v~~iD~~~~~~~~a~--------------~~~~~~~~~-----   77 (194)
                      -+|+|+|.|+|.+.+......       |    ..-+++++|..|-..+..+              +....+...     
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  147 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence            489999999999877765442       1    1246899998443222222              222222210     


Q ss_pred             --------CcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccc------cHHHHHHHHhcccCCeEEEEec
Q 029414           78 --------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------YCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        78 --------~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~------~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                              -.+++..+|+.+.++++...  ....||++|.|+..+.      ...+|+.+.++++|||.+....
T Consensus       148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~--~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~  219 (676)
T 3ps9_A          148 RLLLDAGRVTLDLWFGDINELTSQLDDS--LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT  219 (676)
T ss_dssp             EEEEGGGTEEEEEEESCHHHHGGGBCGG--GTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC
T ss_pred             EEEecCCcEEEEEecCCHHHHHHhcccc--cCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence                    13557889999888775210  1257999999986221      3677899999999999998753

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.54  E-value=0.00037  Score=53.71  Aligned_cols=98  Identities=12%  Similarity=0.063  Sum_probs=64.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-chHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~~f  104 (194)
                      +..+|||+||++|.++.+.+.... ..+|+++|+...-.+.-+ .+++.+. +.+.+..+ |....         ...++
T Consensus        94 ~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~P~-~~~ql~w-~lV~~~~~~Dv~~l---------~~~~~  161 (321)
T 3lkz_A           94 PVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEEPQ-LVQSYGW-NIVTMKSGVDVFYR---------PSECC  161 (321)
T ss_dssp             CCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCCCC-CCCBTTG-GGEEEECSCCTTSS---------CCCCC
T ss_pred             CCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccCcc-hhhhcCC-cceEEEeccCHhhC---------CCCCC
Confidence            556999999999999999888764 468999998664221000 0012222 25788877 65322         12569


Q ss_pred             eEEEEeCCcc---------ccHHHHHHHHhcccCC-eEEEE
Q 029414          105 DYAFVDADKD---------NYCNYHERLMKLLKVG-GIAVY  135 (194)
Q Consensus       105 D~i~id~~~~---------~~~~~~~~~~~~L~~g-G~lv~  135 (194)
                      |+|+||....         .....++.+.+.|++| |-+++
T Consensus       162 D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~  202 (321)
T 3lkz_A          162 DTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV  202 (321)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence            9999996521         2234566667888888 77777

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.47  E-value=0.00032  Score=54.14  Aligned_cols=88  Identities=15%  Similarity=0.211  Sum_probs=58.6

Q ss_pred             CCCeEEEEcc------cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414           26 NAKKTIEIGV------FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        26 ~~~~vLeiG~------G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      ...+|||+|+      ..|.+  .+.+..+.++.|+++|+.+-..            ... .+++||..+..        
T Consensus       109 ~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s------------da~-~~IqGD~~~~~--------  165 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS------------DAD-STLIGDCATVH--------  165 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC------------SSS-EEEESCGGGEE--------
T ss_pred             CCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc------------CCC-eEEEccccccc--------
Confidence            3579999996      56663  3334444346999999987321            112 44889964421        


Q ss_pred             CCCceeEEEEeCCc--------c------ccHHHHHHHHhcccCCeEEEEe
Q 029414          100 NEGSFDYAFVDADK--------D------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       100 ~~~~fD~i~id~~~--------~------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..++||+|+.|..+        .      -...+++-+.+.|+|||.+++-
T Consensus       166 ~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK  216 (344)
T 3r24_A          166 TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK  216 (344)
T ss_dssp             ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence            13789999999531        1      1345566778999999999996

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.42  E-value=0.00045  Score=56.21  Aligned_cols=60  Identities=15%  Similarity=0.183  Sum_probs=47.7

Q ss_pred             cCCCeEEEEcccccHHHHHHH-hhCCCCCEEEEEeCCcchHHhHHHHHHH--c-CCCCcEEEEe
Q 029414           25 VNAKKTIEIGVFTGYSLLLTA-LTIPEDGQITAIDVNRETYEIGLPIIKK--A-GVDHKINFIE   84 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la-~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~-~~~~~v~~~~   84 (194)
                      .++..++|+|++.|..++.++ ...++.++|+++|++|..++..+++++.  + +.+++++++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~  288 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG  288 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEE
Confidence            466899999999999999998 5555348999999999999999999987  2 2313555543

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.39  E-value=0.00042  Score=55.82  Aligned_cols=108  Identities=14%  Similarity=0.060  Sum_probs=62.8

Q ss_pred             CCeEEEEcccccHHHHHHHhh-------------C---CCCCEEEEEeCCcchHH-------hHHHHHH-HcCCCCcEEE
Q 029414           27 AKKTIEIGVFTGYSLLLTALT-------------I---PEDGQITAIDVNRETYE-------IGLPIIK-KAGVDHKINF   82 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~-------------~---~~~~~v~~iD~~~~~~~-------~a~~~~~-~~~~~~~v~~   82 (194)
                      .-+|+|+||++|.+|+.+...             .   ++.-+|+.-|+-..-.+       ...+.+. ..+...+.-+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            468999999999999987665             1   12456777776422111       1111111 1221112355


Q ss_pred             EecchHHHHHHHhhcCCCCCceeEEEEeCC------cc-c-----------------------------------cHHHH
Q 029414           83 IESEALSVLDQLLKYSENEGSFDYAFVDAD------KD-N-----------------------------------YCNYH  120 (194)
Q Consensus        83 ~~~d~~~~~~~~~~~~~~~~~fD~i~id~~------~~-~-----------------------------------~~~~~  120 (194)
                      +.+....+...+++    .+++|+||....      .+ .                                   ...++
T Consensus       133 ~~gvpgSFy~rlfp----~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL  208 (384)
T 2efj_A          133 IGAMPGSFYSRLFP----EESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFL  208 (384)
T ss_dssp             EEECCSCTTSCCSC----TTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCC----CCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            55555555444433    478999997743      11 1                                   11225


Q ss_pred             HHHHhcccCCeEEEEecc
Q 029414          121 ERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       121 ~~~~~~L~~gG~lv~~~~  138 (194)
                      +.-.+.|+|||.+++.-.
T Consensus       209 ~~Ra~eL~pGG~mvl~~~  226 (384)
T 2efj_A          209 RIHSEELISRGRMLLTFI  226 (384)
T ss_dssp             HHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHhccCCeEEEEEe
Confidence            666799999999999643

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.38  E-value=0.00015  Score=58.27  Aligned_cols=108  Identities=10%  Similarity=0.124  Sum_probs=61.3

Q ss_pred             CCeEEEEcccccHHHHHHHhh--------C------CCCCEEEEEeCCcchHHhHHHHHHHcC-----------CCCcEE
Q 029414           27 AKKTIEIGVFTGYSLLLTALT--------I------PEDGQITAIDVNRETYEIGLPIIKKAG-----------VDHKIN   81 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~--------~------~~~~~v~~iD~~~~~~~~a~~~~~~~~-----------~~~~v~   81 (194)
                      +.+|+|+||++|.+|+.++..        +      ++.-+|..-|+-....+..-+.+....           ...+--
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            468999999999999987321        1      135677777765444333222222110           000111


Q ss_pred             EEecchHHHHHHHhhcCCCCCceeEEEEeCC------cc-----------------------------------ccHHHH
Q 029414           82 FIESEALSVLDQLLKYSENEGSFDYAFVDAD------KD-----------------------------------NYCNYH  120 (194)
Q Consensus        82 ~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~------~~-----------------------------------~~~~~~  120 (194)
                      +..+....+...+.+    .++||+|+....      .+                                   +...++
T Consensus       133 f~~gvpgSFy~rlfP----~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL  208 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFP----ARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFL  208 (374)
T ss_dssp             EEEEEESCTTSCCSC----TTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCC----CcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence            233332222222222    478999997743      11                                   334467


Q ss_pred             HHHHhcccCCeEEEEecc
Q 029414          121 ERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       121 ~~~~~~L~~gG~lv~~~~  138 (194)
                      +...+.|+|||.+++.-.
T Consensus       209 ~~ra~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          209 RARAAEVKRGGAMFLVCL  226 (374)
T ss_dssp             HHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHhCCCCEEEEEEe
Confidence            777899999999998543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.34  E-value=0.00081  Score=53.73  Aligned_cols=102  Identities=19%  Similarity=0.267  Sum_probs=66.3

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++++||.+|+|. |..+..+|+... ..+|+++|.+++..+.+++.    +...-+.....+..+.+.+..     .+
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~~-----~g  257 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQL----GATHVINSKTQDPVAAIKEIT-----DG  257 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT-----TS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHHc----CCCEEecCCccCHHHHHHHhc-----CC
Confidence            44678999999876 778888888753 33799999999888877643    432111111123333333321     23


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .+|+|+-...   ....++.+++.|+++|.++.-..
T Consensus       258 g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          258 GVNFALESTG---SPEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             CEEEEEECSC---CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCcEEEECCC---CHHHHHHHHHHHhcCCEEEEeCC
Confidence            7998875432   23567888999999999998543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.22  E-value=0.00082  Score=51.17  Aligned_cols=57  Identities=11%  Similarity=0.130  Sum_probs=44.7

Q ss_pred             HHHHHHHHH--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC
Q 029414           16 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG   75 (194)
Q Consensus        16 ~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   75 (194)
                      +++..++..  .++..|||..||+|..+......   +.+++++|+++..++.+++++...+
T Consensus       200 ~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            344444442  46789999999999999888775   5699999999999999999997654

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.21  E-value=0.00011  Score=58.75  Aligned_cols=108  Identities=12%  Similarity=0.122  Sum_probs=68.9

Q ss_pred             CCeEEEEcccccHHHHHHHhh---------------CCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414           27 AKKTIEIGVFTGYSLLLTALT---------------IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   91 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~---------------~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   91 (194)
                      +-+|+|+||++|.+|+.+...               -++..+|+.-|+-....+.+-+.+.......+..+..+....+.
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            357999999999988876555               23357888899877666665555433211112344555544443


Q ss_pred             HHHhhcCCCCCceeEEEEeCC-------c-----------------------------cccHHHHHHHHhcccCCeEEEE
Q 029414           92 DQLLKYSENEGSFDYAFVDAD-------K-----------------------------DNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~-------~-----------------------------~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ..+++    .+++|+||....       +                             .+...+++.-.+.|+|||.+++
T Consensus       132 ~rlfp----~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl  207 (359)
T 1m6e_X          132 GRLFP----RNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL  207 (359)
T ss_dssp             SCCSC----TTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred             hccCC----CCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            34432    378999987632       1                             0223457777899999999998


Q ss_pred             ecc
Q 029414          136 DNT  138 (194)
Q Consensus       136 ~~~  138 (194)
                      .-.
T Consensus       208 ~~~  210 (359)
T 1m6e_X          208 TIL  210 (359)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            643

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.20  E-value=0.00094  Score=48.38  Aligned_cols=98  Identities=14%  Similarity=0.059  Sum_probs=61.5

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE--ecchHHHHHHHhhcCC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYSE   99 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~~~~   99 (194)
                      ..++++||.+|+  |.|..+..++...  +.+|++++.+++..+.+++    .+..  ..+-  ..+..+.+.+..    
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~~~~~~----  103 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVE--YVGDSRSVDFADEILELT----  103 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCS--EEEETTCSTHHHHHHHHT----
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC--EEeeCCcHHHHHHHHHHh----
Confidence            345689999994  5677777776653  5689999998876665543    3432  1121  122222222221    


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ....+|+++....    ...++.+.+.|+++|.++.-.
T Consensus       104 ~~~~~D~vi~~~g----~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          104 DGYGVDVVLNSLA----GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             TTCCEEEEEECCC----THHHHHHHHTEEEEEEEEECS
T ss_pred             CCCCCeEEEECCc----hHHHHHHHHHhccCCEEEEEc
Confidence            1246998886543    246788899999999999853

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.18  E-value=0.0018  Score=51.07  Aligned_cols=99  Identities=13%  Similarity=0.177  Sum_probs=67.0

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++++||-+|+|. |..+..+|+..  +.+|+++|.+++..+.+++    .+...-+.....+..+.+...      .+
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~------~g  231 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARR----LGAEVAVNARDTDPAAWLQKE------IG  231 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH------HS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHh------CC
Confidence            44678999999875 88888899885  4699999999988887654    353311111112333333321      24


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+|.++....   ....++.+++.|+++|.++.-.
T Consensus       232 ~~d~vid~~g---~~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          232 GAHGVLVTAV---SPKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             SEEEEEESSC---CHHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCEEEEeCC---CHHHHHHHHHHhccCCEEEEeC
Confidence            7998876542   2356788899999999999854

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.14  E-value=0.0041  Score=49.37  Aligned_cols=102  Identities=13%  Similarity=0.082  Sum_probs=65.7

Q ss_pred             HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc---hHHHHHHHhhcC
Q 029414           23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLKYS   98 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~~~   98 (194)
                      ...++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .+.+   .++..+   ..+....+... 
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~-  238 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQ-  238 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHH-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHH-
Confidence            344678999999875 778888888753 3389999999888777654    3543   222222   22332222111 


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      . .+.+|+||-....   ...++.+++.|+++|.++.-.
T Consensus       239 ~-~~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          239 L-GCKPEVTIECTGA---EASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             H-TSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred             h-CCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEEe
Confidence            0 1469988754322   345678889999999999754

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.12  E-value=0.0012  Score=53.35  Aligned_cols=105  Identities=16%  Similarity=0.145  Sum_probs=66.9

Q ss_pred             HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch-HHHHHHHhhcCCC
Q 029414           23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSEN  100 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~  100 (194)
                      ...++++||.+|+|. |..++.+|+... ..+|+++|.+++.++.+++    .|. ..+.....+. .+.+..+.    .
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~~~~~~----~  251 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLSD----AGF-ETIDLRNSAPLRDQIDQIL----G  251 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHT----TTC-EEEETTSSSCHHHHHHHHH----S
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCC-cEEcCCCcchHHHHHHHHh----C
Confidence            345678999999876 788888888753 3389999999988776653    343 1111111232 33333331    1


Q ss_pred             CCceeEEEEeCCccc-----------cHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ...+|+||-......           ....++.+++.|+++|.+++-.
T Consensus       252 g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          252 KPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             SSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             CCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence            236998875433221           1346788899999999998744

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=97.06  E-value=0.0092  Score=47.00  Aligned_cols=102  Identities=17%  Similarity=0.101  Sum_probs=67.4

Q ss_pred             HcCCCeEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++++||-+|+|.+ ..+..+++... +.+|+++|.+++..+.+++    .+...-+.....|..+.+.++.    ...
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t----~g~  231 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKIT----GGL  231 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHT----TSS
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhc----CCC
Confidence            445789999999864 45566666554 7899999999987766554    3433223334445555444442    134


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+|.++.+..   ....+..+++.++++|.++.-.
T Consensus       232 g~d~~~~~~~---~~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          232 GVQSAIVCAV---ARIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             CEEEEEECCS---CHHHHHHHHHTEEEEEEEEECC
T ss_pred             CceEEEEecc---CcchhheeheeecCCceEEEEe
Confidence            6888877653   2355778889999999998854

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.05  E-value=0.0014  Score=52.03  Aligned_cols=104  Identities=16%  Similarity=0.218  Sum_probs=66.6

Q ss_pred             HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ...++++||-+|+|. |..+..+|+... ..+|+++|.+++..+.+++.    |...-+.....+..+.+.+..    ..
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~l----Ga~~vi~~~~~~~~~~v~~~t----~g  233 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALEY----GATDIINYKNGDIVEQILKAT----DG  233 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHHH----TCCEEECGGGSCHHHHHHHHT----TT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHh----CCceEEcCCCcCHHHHHHHHc----CC
Confidence            345678999999875 777888888753 33899999999888777653    432111111223333333331    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ..+|+||-....   ...++.+++.|+++|.++.-..
T Consensus       234 ~g~D~v~d~~g~---~~~~~~~~~~l~~~G~~v~~G~  267 (352)
T 3fpc_A          234 KGVDKVVIAGGD---VHTFAQAVKMIKPGSDIGNVNY  267 (352)
T ss_dssp             CCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEecc
Confidence            469988743322   1356778899999999997543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=97.03  E-value=0.0051  Score=48.54  Aligned_cols=103  Identities=14%  Similarity=0.107  Sum_probs=68.4

Q ss_pred             HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ...++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .|.. .+--...+..+.+.++..    .
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~----lGa~-~~i~~~~~~~~~v~~~t~----g  237 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALARE----VGAD-AAVKSGAGAADAIRELTG----G  237 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH----TTCS-EEEECSTTHHHHHHHHHG----G
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCC-EEEcCCCcHHHHHHHHhC----C
Confidence            345678999999865 778888888764 6799999999988887764    3543 221112233333333321    2


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ..+|++|-...   ....++.+++.|+++|.++.-..
T Consensus       238 ~g~d~v~d~~G---~~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          238 QGATAVFDFVG---AQSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             GCEEEEEESSC---CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCeEEEECCC---CHHHHHHHHHHHhcCCEEEEECC
Confidence            47998775432   23467888999999999998543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.01  E-value=0.0035  Score=50.12  Aligned_cols=107  Identities=11%  Similarity=0.076  Sum_probs=67.3

Q ss_pred             HHHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           22 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ....++++||-+|+|. |..++.+|+... -.+|+++|.+++..+.+++    .|...-+.....+..+.+......  .
T Consensus       178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~--~  250 (370)
T 4ej6_A          178 SGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGL--V  250 (370)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSS--S
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhc--c
Confidence            3455678999999875 678888888754 3489999999988877765    353311111122333332220000  1


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .+.+|+||-...   ....++.+++.|++||.+++-..
T Consensus       251 ~gg~Dvvid~~G---~~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          251 PGGVDVVIECAG---VAETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             TTCEEEEEECSC---CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHhccCCEEEEEec
Confidence            247998875332   23567888999999999998543

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.98  E-value=0.0076  Score=47.42  Aligned_cols=103  Identities=19%  Similarity=0.116  Sum_probs=67.2

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++++||-.|+|. |..+..+|+... ...++++|.+++.++.+++    .|...-+.....+..+....+..    ..
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~----~~  228 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRE----LR  228 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGG----GC
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcc----cC
Confidence            44678999999875 456777787764 5678899999988777664    45432222222344444444321    35


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .+|+|+-...   ....++.+++.++++|.+++-..
T Consensus       229 g~d~v~d~~G---~~~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          229 FNQLILETAG---VPQTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             SSEEEEECSC---SHHHHHHHHHHCCTTCEEEECCC
T ss_pred             Cccccccccc---ccchhhhhhheecCCeEEEEEec
Confidence            6887765432   23567888899999999998543

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.96  E-value=0.0021  Score=51.06  Aligned_cols=75  Identities=15%  Similarity=0.058  Sum_probs=54.7

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH-HhhcCCCCCcee
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEGSFD  105 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~~~~~fD  105 (194)
                      +.+++|+.||.|..++.+....-.-..+.++|+++.+.+..+.++.      +..++.+|..++... +.     ...+|
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~-----~~~~D   70 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFD-----RLSFD   70 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHH-----HHCCS
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcC-----cCCcC
Confidence            4579999999999999998763101368999999999999888863      334677887765322 21     12699


Q ss_pred             EEEEeCC
Q 029414          106 YAFVDAD  112 (194)
Q Consensus       106 ~i~id~~  112 (194)
                      +++.+.+
T Consensus        71 ~l~~gpP   77 (343)
T 1g55_A           71 MILMSPP   77 (343)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9998865

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=96.91  E-value=0.036  Score=38.62  Aligned_cols=103  Identities=13%  Similarity=0.147  Sum_probs=70.8

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      +.-|||+|-|+|..=-.+.+.+| +-+|+.+|..-....        .-.|+.-.++.||+.+.++.....  -..+.-+
T Consensus        41 ~GpVlElGLGNGRTydHLRe~~P-~R~I~vfDR~~~~hp--------~~~P~~e~~ilGdi~~tL~~~~~r--~g~~a~L  109 (174)
T 3iht_A           41 SGPVYELGLGNGRTYHHLRQHVQ-GREIYVFERAVASHP--------DSTPPEAQLILGDIRETLPATLER--FGATASL  109 (174)
T ss_dssp             CSCEEEECCTTCHHHHHHHHHCC-SSCEEEEESSCCCCG--------GGCCCGGGEEESCHHHHHHHHHHH--HCSCEEE
T ss_pred             CCceEEecCCCChhHHHHHHhCC-CCcEEEEEeeeccCC--------CCCCchHheecccHHHHHHHHHHh--cCCceEE
Confidence            45699999999999999999998 889999997432211        123456689999999988763211  0356777


Q ss_pred             EEEeCCcccc---HHH---H-HHHHhcccCCeEEEEecccc
Q 029414          107 AFVDADKDNY---CNY---H-ERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       107 i~id~~~~~~---~~~---~-~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ++.|-...+.   ...   + ..+..+|.|||+++....+.
T Consensus       110 aHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl~  150 (174)
T 3iht_A          110 VHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRMY  150 (174)
T ss_dssp             EEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCCC
T ss_pred             EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccC
Confidence            8887552221   111   1 22347999999999987664

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.86  E-value=0.0063  Score=49.00  Aligned_cols=105  Identities=14%  Similarity=0.107  Sum_probs=66.7

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc-hHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~~~  101 (194)
                      ..++++||-+|+|. |..++.+|+... ..+|+++|.+++.++.+++    .|.. .+.....+ ..+.+..+.    ..
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~----lGa~-~i~~~~~~~~~~~v~~~t----~g  252 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA----QGFE-IADLSLDTPLHEQIAALL----GE  252 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCE-EEETTSSSCHHHHHHHHH----SS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH----cCCc-EEccCCcchHHHHHHHHh----CC
Confidence            44678999999865 778888888764 3489999999988887754    3531 11111112 233333321    12


Q ss_pred             CceeEEEEeCCccc------------cHHHHHHHHhcccCCeEEEEecc
Q 029414          102 GSFDYAFVDADKDN------------YCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       102 ~~fD~i~id~~~~~------------~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ..+|+||-......            ....++.+++.|+++|.+++-..
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          253 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            47998875433221            22467889999999999987543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.82  E-value=0.014  Score=46.08  Aligned_cols=105  Identities=11%  Similarity=0.074  Sum_probs=64.8

Q ss_pred             HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-cchHHHHHHHhhcCCC
Q 029414           23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSEN  100 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~  100 (194)
                      ...++++||-+|+|. |..+..+|+..  +.+|++++.+++..+.+++    .+.+.-+.... .+..+.+...... ..
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~i~~~~~~-~~  237 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRS-AI  237 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHH-HS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCcccccHHHHHHHHhcc-cc
Confidence            345678999999864 67778888875  4679999999988877653    35431111110 2222222222110 00


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ...+|++|-....   ...++.+++.|+++|.++.-.
T Consensus       238 g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          238 GDLPNVTIDCSGN---EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             SSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence            1469988754322   345778889999999998754

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.81  E-value=0.015  Score=46.20  Aligned_cols=104  Identities=11%  Similarity=0.008  Sum_probs=66.2

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe--cchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~~  100 (194)
                      ..++++||-+|+|. |..++.+|+... -.+|+++|.+++..+.+++. .    +.-+....  .+..++...+... ..
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~l-~----~~~~~~~~~~~~~~~~~~~v~~~-t~  249 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAG-ACPLVITDIDEGRLKFAKEI-C----PEVVTHKVERLSAEESAKKIVES-FG  249 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESCHHHHHHHHHH-C----TTCEEEECCSCCHHHHHHHHHHH-TS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh-c----hhcccccccccchHHHHHHHHHH-hC
Confidence            44678999999865 778888888753 23499999999999888865 2    11223221  1122222222111 11


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ...+|++|-...   ....++.+++.|+++|.++.-.
T Consensus       250 g~g~Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          250 GIEPAVALECTG---VESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             SCCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECC
T ss_pred             CCCCCEEEECCC---ChHHHHHHHHHhcCCCEEEEEc
Confidence            357998875432   2345778889999999999854

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.79  E-value=0.0076  Score=47.96  Aligned_cols=100  Identities=16%  Similarity=0.115  Sum_probs=65.4

Q ss_pred             HHcCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           23 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        23 ~~~~~~~vLeiG--~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ...++++||-+|  .|.|..+..+|+..  +.+|++++.+++..+.+++    .+...-+.....+..+.+....     
T Consensus       160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~-----  228 (362)
T 2c0c_A          160 GLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS----LGCDRPINYKTEPVGTVLKQEY-----  228 (362)
T ss_dssp             CCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHC-----
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHH----cCCcEEEecCChhHHHHHHHhc-----
Confidence            345678999999  45678888888875  5699999999887777664    3432111111122323333321     


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ...+|+++-....    ..++.+++.|+++|.++.-.
T Consensus       229 ~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          229 PEGVDVVYESVGG----AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             TTCEEEEEECSCT----HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCCH----HHHHHHHHHHhcCCEEEEEe
Confidence            2479988754432    46788899999999998754

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.78  E-value=0.0036  Score=49.19  Aligned_cols=101  Identities=13%  Similarity=0.109  Sum_probs=65.6

Q ss_pred             HHcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           23 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        23 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ...++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+.+   ..+...-+.....+..+.+.+..     
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~-----  215 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLVE---ELGFDGAIDYKNEDLAAGLKREC-----  215 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TTCCSEEEETTTSCHHHHHHHHC-----
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCCEEEECCCHHHHHHHHHhc-----
Confidence            3556789999998  5677888888774  5699999999887776632   23432111111123333333321     


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+.+|+++-....    ..++.+++.|+++|.++.-.
T Consensus       216 ~~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          216 PKGIDVFFDNVGG----EILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             CCCceEEEECCCc----chHHHHHHHHhhCCEEEEEe
Confidence            2579988754432    46788999999999999854

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.78  E-value=0.0084  Score=47.85  Aligned_cols=98  Identities=16%  Similarity=0.295  Sum_probs=64.5

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-----cchHHHHHHHhhc
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLLKY   97 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~~~~~~~~~~   97 (194)
                      ..++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .+.. .  ++.     .+..+.+....  
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~-~--vi~~~~~~~~~~~~~~~~~--  259 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV----FGAT-D--FVNPNDHSEPISQVLSKMT--  259 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCC-E--EECGGGCSSCHHHHHHHHH--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCc-e--EEeccccchhHHHHHHHHh--
Confidence            34568999999864 677888888753 2389999999988887764    3532 1  221     12333333321  


Q ss_pred             CCCCCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEec
Q 029414           98 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  137 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~  137 (194)
                         .+.+|+||-....   ...++.+++.|+++ |.++.-.
T Consensus       260 ---~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          260 ---NGGVDFSLECVGN---VGVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             ---TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECS
T ss_pred             ---CCCCCEEEECCCC---HHHHHHHHHHhhcCCcEEEEEc
Confidence               2479988754322   34578889999999 9998754

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.76  E-value=0.0082  Score=48.49  Aligned_cols=104  Identities=8%  Similarity=0.051  Sum_probs=62.1

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .++++||-+|+|. |..++.+|+... -.+|+++|.+++..+.+++.    |...-+.....+..+.+.++.    ....
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~l----Ga~~vi~~~~~~~~~~i~~~t----~g~g  282 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVRRNLAKEL----GADHVIDPTKENFVEAVLDYT----NGLG  282 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHHH----TCSEEECTTTSCHHHHHHHHT----TTCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHc----CCCEEEcCCCCCHHHHHHHHh----CCCC
Confidence            4567999999864 667778888753 34999999999888877653    432111111123333333331    1247


Q ss_pred             eeEEEEeCCcc--ccHHHHHHHHhcccCCeEEEEec
Q 029414          104 FDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       104 fD~i~id~~~~--~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +|+||-.....  .....++.+++.++++|.++.-.
T Consensus       283 ~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          283 AKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             CSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence            99887543332  22223333345559999999854

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.74  E-value=0.0077  Score=48.04  Aligned_cols=98  Identities=14%  Similarity=0.244  Sum_probs=64.6

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-----cchHHHHHHHhhc
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLLKY   97 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~~~~~~~~~~   97 (194)
                      ..++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .|..   .++.     .+..+.+.+..  
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~~~t--  258 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVICEKT--  258 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHHT--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCc---EEEecccccchHHHHHHHHh--
Confidence            44678999999864 677778888753 3389999999988887764    3532   1221     12333333331  


Q ss_pred             CCCCCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEec
Q 029414           98 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  137 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~  137 (194)
                         .+.+|+||-...   ....++.+++.|+++ |.++.-.
T Consensus       259 ---~gg~Dvvid~~g---~~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          259 ---NGGVDYAVECAG---RIETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             ---TSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECC
T ss_pred             ---CCCCCEEEECCC---CHHHHHHHHHHHhcCCCEEEEEc
Confidence               247998875432   234578889999999 9998754

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.72  E-value=0.0041  Score=49.80  Aligned_cols=102  Identities=22%  Similarity=0.285  Sum_probs=65.9

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE--ecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~~~~~  100 (194)
                      ..++++||-+|+|. |..++.+|+... -.+|+++|.+++.++.+++    .|.+.-+...  ..+..+.+.++.     
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~~-----  260 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAKK----FGVNEFVNPKDHDKPIQEVIVDLT-----  260 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHHT----TTCCEEECGGGCSSCHHHHHHHHT-----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCcEEEccccCchhHHHHHHHhc-----
Confidence            44578999999864 778888888753 3489999999988887653    3533111111  122333333331     


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEecc
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  138 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  138 (194)
                      .+.+|++|-...   ....++.+++.|++| |.+++-..
T Consensus       261 ~gg~D~vid~~g---~~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          261 DGGVDYSFECIG---NVSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             TSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHhhccCCEEEEEcc
Confidence            248998875432   235678889999997 99988554

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.72  E-value=0.0088  Score=47.76  Aligned_cols=98  Identities=18%  Similarity=0.267  Sum_probs=64.4

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-----cchHHHHHHHhhc
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLLKY   97 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~~~~~~~~~~   97 (194)
                      ..++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .+..   .++.     .+..+.+.+..  
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~v~~~~--  262 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVITELT--  262 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHHH--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCc---EEEccccccchHHHHHHHHh--
Confidence            34568999999864 677788888753 3389999999988887654    3532   1221     12333333321  


Q ss_pred             CCCCCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEec
Q 029414           98 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  137 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~  137 (194)
                         .+.+|+||-...   ....++.+++.|+++ |.++.-.
T Consensus       263 ---~~g~Dvvid~~G---~~~~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          263 ---AGGVDYSLDCAG---TAQTLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             ---TSCBSEEEESSC---CHHHHHHHHHTBCTTTCEEEECC
T ss_pred             ---CCCccEEEECCC---CHHHHHHHHHHhhcCCCEEEEEC
Confidence               247998874332   234578889999999 9998754

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.67  E-value=0.027  Score=44.93  Aligned_cols=96  Identities=18%  Similarity=0.191  Sum_probs=64.5

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++++||-+|+|. |..++.+|+..  +.+|++++.+++..+.+++    .+..   .++.....+....+      .+
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~------~~  256 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAH------LK  256 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTT------TT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHh------hc
Confidence            44678999999874 77788888875  5689999999998888775    3432   22222222333332      25


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+|+||-......   .++.+++.|+++|.++.-.
T Consensus       257 g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          257 SFDFILNTVAAPH---NLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             CEEEEEECCSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred             CCCEEEECCCCHH---HHHHHHHHhccCCEEEEec
Confidence            7998875443322   2566789999999998743

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.67  E-value=0.0036  Score=49.87  Aligned_cols=100  Identities=16%  Similarity=0.101  Sum_probs=65.7

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-cchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~  101 (194)
                      ..++++||-+|+|. |..+..+|+..  +.+|++++.+++.++.+++    .|...-+. .. .+..+.+..+.    ..
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~-~~~~~~~~~v~~~~----~g  255 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFA----LGADHGIN-RLEEDWVERVYALT----GD  255 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCSEEEE-TTTSCHHHHHHHHH----TT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHH----cCCCEEEc-CCcccHHHHHHHHh----CC
Confidence            44678999999875 77788888875  5699999999988877655    35331111 11 23333333332    13


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ..+|+|+-....    ..++.+++.|+++|.++.-..
T Consensus       256 ~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          256 RGADHILEIAGG----AGLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             CCEEEEEEETTS----SCHHHHHHHEEEEEEEEEECC
T ss_pred             CCceEEEECCCh----HHHHHHHHHhhcCCEEEEEec
Confidence            479988765442    236778899999999998543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.67  E-value=0.0096  Score=47.49  Aligned_cols=98  Identities=14%  Similarity=0.300  Sum_probs=64.3

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-----cchHHHHHHHhhc
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLLKY   97 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~~~~~~~~~~   97 (194)
                      ..++++||-+|+|. |..++.+|+... ..+|++++.+++..+.+++    .+..   .++.     .+..+.+.+..  
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~--  258 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKE----VGAT---ECVNPQDYKKPIQEVLTEMS--  258 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHHT--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCc---eEecccccchhHHHHHHHHh--
Confidence            34578999999865 677788888753 2389999999988887753    3532   1221     12333333331  


Q ss_pred             CCCCCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEec
Q 029414           98 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  137 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~  137 (194)
                         .+.+|+||-....   ...++.+++.|+++ |.++.-.
T Consensus       259 ---~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          259 ---NGGVDFSFEVIGR---LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             ---TSCBSEEEECSCC---HHHHHHHHHHBCTTTCEEEECS
T ss_pred             ---CCCCcEEEECCCC---HHHHHHHHHHhhcCCcEEEEec
Confidence               2479988754322   34577888999999 9998754

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.65  E-value=0.01  Score=47.32  Aligned_cols=98  Identities=17%  Similarity=0.319  Sum_probs=64.3

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-----cchHHHHHHHhhc
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLLKY   97 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~~~~~~~~~~   97 (194)
                      ..++++||-+|+|. |..+..+|+... ..+|++++.+++..+.+++.    +.. .  ++.     .+..+.+.+..  
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~~~l----Ga~-~--vi~~~~~~~~~~~~v~~~~--  257 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEF----GAT-E--CINPQDFSKPIQEVLIEMT--  257 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHH----TCS-E--EECGGGCSSCHHHHHHHHT--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHc----CCc-e--EeccccccccHHHHHHHHh--
Confidence            34568999999864 667777887753 23899999999988877642    432 1  221     12333333331  


Q ss_pred             CCCCCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEec
Q 029414           98 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  137 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~  137 (194)
                         .+.+|+++-....   ...++.+++.|+++ |.++.-.
T Consensus       258 ---~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          258 ---DGGVDYSFECIGN---VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             ---TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECS
T ss_pred             ---CCCCCEEEECCCc---HHHHHHHHHhhccCCcEEEEEe
Confidence               2479988754322   34578889999999 9998754

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.62  E-value=0.0041  Score=48.86  Aligned_cols=99  Identities=18%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             cCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           25 VNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        25 ~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      .++++||-+|+  |.|..+..+|+..  +.+|++++.+++.++.+++    .+...-+.....+..+.+....    ...
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~~~~~~~~~~~~~~~~~~----~~~  216 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKE----YGAEYLINASKEDILRQVLKFT----NGK  216 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHT----TTS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCcEEEeCCCchHHHHHHHHh----CCC
Confidence            45789999994  5677888888874  5699999999888776654    3432111111123333333331    134


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+|+++-....    ..++.+++.|+++|.++.-.
T Consensus       217 g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          217 GVDASFDSVGK----DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             CEEEEEECCGG----GGHHHHHHHEEEEEEEEECC
T ss_pred             CceEEEECCCh----HHHHHHHHHhccCCEEEEEc
Confidence            79988754432    45778889999999999854

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.59  E-value=0.0036  Score=49.34  Aligned_cols=101  Identities=15%  Similarity=0.042  Sum_probs=64.0

Q ss_pred             HcCCCeEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++++||-+|+|  .|..+..+|+..  +.+|++++.+++..+.+++.    +...-+.....+..+.+....    ..
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~l----ga~~~~~~~~~~~~~~~~~~~----~~  211 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLRL----GAAYVIDTSTAPLYETVMELT----NG  211 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHH----TCSEEEETTTSCHHHHHHHHT----TT
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhC----CCcEEEeCCcccHHHHHHHHh----CC
Confidence            4467899999986  577788888764  56999999999988887762    432111111123333333331    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ..+|+++-......    .....+.|+++|.++.-..
T Consensus       212 ~g~Dvvid~~g~~~----~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          212 IGADAAIDSIGGPD----GNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             SCEEEEEESSCHHH----HHHHHHTEEEEEEEEECCC
T ss_pred             CCCcEEEECCCChh----HHHHHHHhcCCCEEEEEee
Confidence            47998875443222    2344589999999998543

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.59  E-value=0.0074  Score=47.31  Aligned_cols=97  Identities=11%  Similarity=0.072  Sum_probs=63.2

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe---cchHHHHHHHhhcC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYS   98 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~~   98 (194)
                      ..++++||-.|+  |.|..+..++...  +.+|++++.+++..+.+++    .+..  ..+-.   .+..+.+....   
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~~~~~~~---  211 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFD--AAFNYKTVNSLEEALKKAS---  211 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS--EEEETTSCSCHHHHHHHHC---
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCc--EEEecCCHHHHHHHHHHHh---
Confidence            446789999997  5677777777764  5699999998877776632    2432  12211   22333333321   


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                        .+.+|+++-....    ..++.+++.|+++|.++.-.
T Consensus       212 --~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          212 --PDGYDCYFDNVGG----EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             --TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             --CCCCeEEEECCCh----HHHHHHHHHHhcCCEEEEEe
Confidence              2479988765432    34788889999999998743

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.59  E-value=0.0071  Score=47.72  Aligned_cols=99  Identities=12%  Similarity=0.113  Sum_probs=64.7

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++++||-+|+  |.|..+..+|+..  +.+|++++.+++..+.+++.    +.. .+--...+..+.+....    ..
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----ga~-~v~~~~~~~~~~v~~~~----~~  225 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKSV----GAD-IVLPLEEGWAKAVREAT----GG  225 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHH----TCS-EEEESSTTHHHHHHHHT----TT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----CCc-EEecCchhHHHHHHHHh----CC
Confidence            345789999996  5678888888875  56999999999888877753    432 22111123333333331    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ..+|+++-....    ..++.+++.|+++|.++.-.
T Consensus       226 ~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          226 AGVDMVVDPIGG----PAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             SCEEEEEESCC------CHHHHHHTEEEEEEEEEC-
T ss_pred             CCceEEEECCch----hHHHHHHHhhcCCCEEEEEE
Confidence            379988754433    24677889999999999854

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.57  E-value=0.0043  Score=48.57  Aligned_cols=99  Identities=8%  Similarity=-0.005  Sum_probs=64.1

Q ss_pred             cCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           25 VNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        25 ~~~~~vLeiG--~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      .++++||-+|  .|.|..+..+|+..  +.+|++++.+++..+.+++    .+...-+.....+..+.+.+..    ...
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~----~~~  208 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKA----LGAWETIDYSHEDVAKRVLELT----DGK  208 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TTC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHh----CCC
Confidence            4578999998  35677888888774  5699999999988887764    2432111111123333333331    124


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+|+++-....    ..++.+++.|+++|.++.-.
T Consensus       209 g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          209 KCPVVYDGVGQ----DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             CEEEEEESSCG----GGHHHHHTTEEEEEEEEECC
T ss_pred             CceEEEECCCh----HHHHHHHHHhcCCCEEEEEe
Confidence            79987754433    34677889999999999854

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.54  E-value=0.0085  Score=47.71  Aligned_cols=97  Identities=15%  Similarity=0.075  Sum_probs=63.0

Q ss_pred             CCCeEEEEc-c-cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           26 NAKKTIEIG-V-FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        26 ~~~~vLeiG-~-G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ++++||-+| + +.|..+..+|+... +.+|++++.+++..+.+++    .|.+ .+--...+..+.+..+     ..+.
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~~----lGad-~vi~~~~~~~~~v~~~-----~~~g  239 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVKS----LGAH-HVIDHSKPLAAEVAAL-----GLGA  239 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHHH----TTCS-EEECTTSCHHHHHHTT-----CSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHH----cCCC-EEEeCCCCHHHHHHHh-----cCCC
Confidence            456899998 3 45788888888644 6799999999988877754    4532 1111112222222222     1357


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|+++-...   ....++.+++.|+++|.++.-
T Consensus       240 ~Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          240 PAFVFSTTH---TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEEECSC---HHHHHHHHHHHSCTTCEEEEC
T ss_pred             ceEEEECCC---chhhHHHHHHHhcCCCEEEEE
Confidence            997775332   234678888999999999974

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.53  E-value=0.0092  Score=47.93  Aligned_cols=103  Identities=11%  Similarity=0.007  Sum_probs=66.1

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH-HhhcCCCCCceeE
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEGSFDY  106 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~~~~~fD~  106 (194)
                      .+++|+.||.|..++.+..+.  -..+.++|+++.+.+..+.|+.      +..++.+|..+.... +.......+.+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            479999999999999998762  2346799999999888887752      456777887664221 1100001367999


Q ss_pred             EEEeCCcc-----------c-cHHH---HHHHHhcccCCeEEEEeccc
Q 029414          107 AFVDADKD-----------N-YCNY---HERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       107 i~id~~~~-----------~-~~~~---~~~~~~~L~~gG~lv~~~~~  139 (194)
                      |+.+.+..           + ....   +-.+...++| -++++.|+.
T Consensus        75 i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-~~~v~ENV~  121 (376)
T 3g7u_A           75 IIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-LFFLAENVP  121 (376)
T ss_dssp             EEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCC-SEEEEEECT
T ss_pred             EEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCC-CEEEEecch
Confidence            99886511           0 1112   2234466778 567777764

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.51  E-value=0.097  Score=40.80  Aligned_cols=111  Identities=8%  Similarity=-0.003  Sum_probs=71.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC--CCcEEEEecchHH-HHHHHhhcCCCCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALS-VLDQLLKYSENEG  102 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~~~~~~~~~~~~~  102 (194)
                      .+..|+++|||.=.....+.  .+++.+++-+| .|+.++..++.+...+.  +.+..++..|..+ +...+........
T Consensus       102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~  178 (310)
T 2uyo_A          102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  178 (310)
T ss_dssp             TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence            45789999997655533332  23357899999 59999999998876542  3578888888765 3333322111112


Q ss_pred             ceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          103 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       103 ~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ..-++++.+.     ......+++.+...+.||+.|+++.+.
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            3445555443     334567788888888999999998643

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.47  E-value=0.007  Score=47.50  Aligned_cols=100  Identities=13%  Similarity=0.159  Sum_probs=63.6

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++++||-.|+  |.|..+..++...  +.+|++++.+++..+.+++    .+...-+.....+..+.+.+..    ..
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~i~~~~----~~  212 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARK----LGCHHTINYSTQDFAEVVREIT----GG  212 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH----TT
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCCHHHHHHHHHHh----CC
Confidence            345689999994  6677888888774  5699999999887777654    2422111111122223222221    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ..+|+++-....    ..++.+++.|+++|.++.-.
T Consensus       213 ~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          213 KGVDVVYDSIGK----DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             CCEEEEEECSCT----TTHHHHHHTEEEEEEEEECC
T ss_pred             CCCeEEEECCcH----HHHHHHHHhhccCCEEEEEe
Confidence            469988755433    34678889999999998753

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.46  E-value=0.017  Score=45.47  Aligned_cols=97  Identities=18%  Similarity=0.190  Sum_probs=64.4

Q ss_pred             HHcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe---cchHHHHHHHhhcC
Q 029414           23 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYS   98 (194)
Q Consensus        23 ~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~~   98 (194)
                      ...++++||-+|+| .|..+..+|+..  +.+|++++.+++..+.+++    .+..   .++.   .+..+.+.+.    
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~d~~~~~~~~~~~~~----  227 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEK----  227 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHH----
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCC---EEecCCCccHHHHHHHH----
Confidence            34567899999986 477788888875  4699999999988877654    3432   1221   2222222222    


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                        .+.+|+++-....   ...++.+++.|+++|.++.-.
T Consensus       228 --~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          228 --VGGVHAAVVTAVS---KPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             --HSSEEEEEESSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             --hCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEec
Confidence              1479988754422   345788889999999998743

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.022  Score=44.86  Aligned_cols=98  Identities=13%  Similarity=0.050  Sum_probs=64.2

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE---ecchHHHHHHHhhcC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI---ESEALSVLDQLLKYS   98 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~---~~d~~~~~~~~~~~~   98 (194)
                      ..++++||.+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .+..  ..+-   ..+..+.+....   
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~~~~~~~---  235 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRS----IGGE--VFIDFTKEKDIVGAVLKAT---  235 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHH----TTCC--EEEETTTCSCHHHHHHHHH---
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHH----cCCc--eEEecCccHhHHHHHHHHh---
Confidence            346789999998  5677777887764  5699999998887766554    3432  1121   122333333321   


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                        .+.+|+++-...   ....++.+++.|+++|.++.-.
T Consensus       236 --~~~~D~vi~~~g---~~~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          236 --DGGAHGVINVSV---SEAAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             --TSCEEEEEECSS---CHHHHHHHTTSEEEEEEEEECC
T ss_pred             --CCCCCEEEECCC---cHHHHHHHHHHHhcCCEEEEEe
Confidence              137998886543   2346788899999999998754

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.40  E-value=0.0012  Score=64.67  Aligned_cols=102  Identities=15%  Similarity=0.084  Sum_probs=54.2

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCC----CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPE----DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..+|||||.|+|..+..+...+..    ...++..|+++...+.++++|....    +..-.-|..+. ..+     ...
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~-~~~-----~~~ 1310 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANP-APG-----SLG 1310 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCC-CC---------
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----ccccccccccc-ccC-----CCC
Confidence            458999999999877766655532    2378899999999999998887542    22210011000 000     025


Q ss_pred             ceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          103 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       103 ~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .||+|+....   ..+....++++.++|+|||.+++...
T Consensus      1311 ~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1311 KADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             -CCEEEEECC--------------------CCEEEEEEC
T ss_pred             ceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            6999997654   23455678889999999999998654

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.36  E-value=0.0056  Score=47.89  Aligned_cols=97  Identities=12%  Similarity=0.049  Sum_probs=62.3

Q ss_pred             cCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE--ecchHHHHHHHhhcCCC
Q 029414           25 VNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYSEN  100 (194)
Q Consensus        25 ~~~~~vLeiG--~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~~~~~  100 (194)
                      .++++||-.|  .|.|..+..++...  +.+|++++.+++..+.+++    .+..  ..+-  ..+..+.+.+..    .
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~----~  206 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAW--QVINYREEDLVERLKEIT----G  206 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHT----T
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC--EEEECCCccHHHHHHHHh----C
Confidence            3568999999  45677777777764  5699999999888777765    2422  1121  122222222221    1


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ...+|+++-...    ...++.+++.|+++|.++.-.
T Consensus       207 ~~~~D~vi~~~g----~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          207 GKKVRVVYDSVG----RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             TCCEEEEEECSC----GGGHHHHHHTEEEEEEEEECC
T ss_pred             CCCceEEEECCc----hHHHHHHHHHhcCCCEEEEEe
Confidence            246998876554    245678889999999998753

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.33  E-value=0.0053  Score=46.65  Aligned_cols=53  Identities=15%  Similarity=0.166  Sum_probs=40.7

Q ss_pred             cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc--c---------------ccHHHHHHHHhcccCCeEEEEe
Q 029414           79 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--D---------------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        79 ~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~---------------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+++++|+.+.+..+.     .++||+||+|++.  .               .....++.+.++|+|||.|++.
T Consensus         4 ~~~l~~gD~~~~l~~l~-----~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            4 INKIHQMNCFDFLDQVE-----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SSSEEECCHHHHHHHSC-----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCeEEechHHHHHHhcc-----ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            35688999999887752     4689999999872  1               1245567778999999999885

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.32  E-value=0.01  Score=46.82  Aligned_cols=100  Identities=16%  Similarity=0.121  Sum_probs=65.0

Q ss_pred             HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch-HHHHHHHhhcCCC
Q 029414           23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSEN  100 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~  100 (194)
                      .. ++++||-+|+|. |..+..+|+...++.+|++++.+++..+.+++    .+..   .++..+. .+....+.    .
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~----~  235 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGAD---YVSEMKDAESLINKLT----D  235 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCS---EEECHHHHHHHHHHHH----T
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCC---EEeccccchHHHHHhh----c
Confidence            44 778999999864 66777888875114689999999988887765    2432   2222111 22233331    1


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ...+|+||-....   ...++.+++.|+++|.++.-.
T Consensus       236 g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          236 GLGASIAIDLVGT---EETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             TCCEEEEEESSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCccEEEECCCC---hHHHHHHHHHhhcCCEEEEeC
Confidence            2379988754322   345788889999999998743

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.28  E-value=0.016  Score=45.78  Aligned_cols=100  Identities=19%  Similarity=0.165  Sum_probs=64.0

Q ss_pred             HcCCCeEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe--cchHHHHHHHhhcCC
Q 029414           24 LVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE   99 (194)
Q Consensus        24 ~~~~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~   99 (194)
                      ..++++||-+|+|  .|..+..+++... +.+|+++|.+++..+.+++    .+..  ..+-.  .+..+....+.    
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~----  236 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGAD--YVINASMQDPLAEIRRIT----  236 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHT----
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCC--EEecCCCccHHHHHHHHh----
Confidence            4467899999987  5567777777642 4689999999988877754    2422  11211  12222233331    


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ..+.+|+++-....   ...++.+++.|+++|.++.-.
T Consensus       237 ~~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          237 ESKGVDAVIDLNNS---EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             TTSCEEEEEESCCC---HHHHTTGGGGEEEEEEEEECC
T ss_pred             cCCCceEEEECCCC---HHHHHHHHHHHhcCCEEEEEC
Confidence            11479988765432   345778889999999998743

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.28  E-value=0.016  Score=45.75  Aligned_cols=96  Identities=11%  Similarity=0.081  Sum_probs=62.9

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCC-EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe---cchHHHHHHHhhcCCC
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYSEN  100 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~~~~  100 (194)
                      ++++||-+|+|. |..++.+|+..  +. +|++++.+++..+.+++    .+..   .++.   .+..+.+.++.    .
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~v~~~~----~  233 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKAS--GAYPVIVSEPSDFRRELAKK----VGAD---YVINPFEEDVVKEVMDIT----D  233 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHH----HTCS---EEECTTTSCHHHHHHHHT----T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCC---EEECCCCcCHHHHHHHHc----C
Confidence            568899999853 67777888875  45 89999999888777764    2432   1222   23333333321    1


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ...+|+++-...   ....++.+++.|+++|.++.-.
T Consensus       234 g~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          234 GNGVDVFLEFSG---APKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             TSCEEEEEECSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHHhcCCEEEEEc
Confidence            246998875432   2345778889999999998753

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.25  E-value=0.042  Score=42.36  Aligned_cols=93  Identities=17%  Similarity=0.168  Sum_probs=63.4

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch-HHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~  100 (194)
                      ..++++||-+|+  |.|..+..+|+..  +.+|++++.+++..+.+++    .+..   .++..+. .+....+      
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~------  187 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAW------  187 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHT------
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHh------
Confidence            456789999997  5677888888875  4699999999988877654    3432   2222222 2333332      


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                       +.+|+++- ...    ..++.+++.++++|.++.-.
T Consensus       188 -~~~d~vid-~g~----~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          188 -GGLDLVLE-VRG----KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             -TSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC-
T ss_pred             -cCceEEEE-CCH----HHHHHHHHhhccCCEEEEEe
Confidence             57998886 533    34678889999999998743

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.23  E-value=0.011  Score=46.92  Aligned_cols=99  Identities=16%  Similarity=0.132  Sum_probs=64.2

Q ss_pred             HcCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG--~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++++||-+|  .|.|..+..+|+..  +.+|++++.+++..+.+++    .+...-+.....+..+.+....     .
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~~~~~-----~  233 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACER----LGAKRGINYRSEDFAAVIKAET-----G  233 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH-----S
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHHHHHHHHHh-----C
Confidence            34578999995  34677888888875  5699999999988887765    2432111111123333333321     3


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +.+|+++-.....    .++.+++.|+++|.++.-.
T Consensus       234 ~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          234 QGVDIILDMIGAA----YFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             SCEEEEEESCCGG----GHHHHHHTEEEEEEEEECC
T ss_pred             CCceEEEECCCHH----HHHHHHHHhccCCEEEEEE
Confidence            5799887554332    4677889999999998754

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.22  E-value=0.0057  Score=48.04  Aligned_cols=54  Identities=19%  Similarity=0.229  Sum_probs=42.0

Q ss_pred             CcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc-----------------ccHHHHHHHHhcccCCeEEEEe
Q 029414           78 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        78 ~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~-----------------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+.+++++|+.+.+..+.     .++||+||+|++..                 .....++.+.++|+|||.+++.
T Consensus        13 ~~~~ii~gD~~~~l~~l~-----~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFP-----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSEEEEESCHHHHGGGSC-----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCC-----CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            367899999988766542     46899999998731                 2356678888999999999884

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.21  E-value=0.042  Score=43.44  Aligned_cols=99  Identities=7%  Similarity=0.032  Sum_probs=62.9

Q ss_pred             HHHcCC------CeEEEEcccc-cHHH-HHHH-hhCCCCCE-EEEEeCCcc---hHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           22 LRLVNA------KKTIEIGVFT-GYSL-LLTA-LTIPEDGQ-ITAIDVNRE---TYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        22 ~~~~~~------~~vLeiG~G~-G~~~-~~la-~~~~~~~~-v~~iD~~~~---~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      +...++      ++||-+|+|. |..+ +.+| +..  +.+ |++++.+++   ..+.+++    .|.. .+.....+..
T Consensus       162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~--Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~  234 (357)
T 2b5w_A          162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK--GYENLYCLGRRDRPDPTIDIIEE----LDAT-YVDSRQTPVE  234 (357)
T ss_dssp             HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT--CCCEEEEEECCCSSCHHHHHHHH----TTCE-EEETTTSCGG
T ss_pred             cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc--CCcEEEEEeCCcccHHHHHHHHH----cCCc-ccCCCccCHH
Confidence            445567      8999999743 6667 7777 664  444 999999988   7776653    3432 2211112333


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      + +.++      .+.+|+||-....   ...++.+++.|+++|.++.-.
T Consensus       235 ~-i~~~------~gg~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          235 D-VPDV------YEQMDFIYEATGF---PKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             G-HHHH------SCCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             H-HHHh------CCCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEe
Confidence            3 3333      1379988743322   245788889999999998854

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.19  E-value=0.011  Score=46.49  Aligned_cols=54  Identities=13%  Similarity=0.108  Sum_probs=41.5

Q ss_pred             CcEEEE-ecchHHHHHHHhhcCCCCCceeEEEEeCCcc--------------ccHHHHHHHHhcccCCeEEEEe
Q 029414           78 HKINFI-ESEALSVLDQLLKYSENEGSFDYAFVDADKD--------------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        78 ~~v~~~-~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--------------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ...+++ ++|+.+.+..+.     .++||+||+|++..              .....+..+.++|+|||.|++.
T Consensus        37 ~~~~l~i~gD~l~~L~~l~-----~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~  105 (319)
T 1eg2_A           37 TTRHVYDVCDCLDTLAKLP-----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF  105 (319)
T ss_dssp             CEEEEEEECCHHHHHHTSC-----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceEEECCcHHHHHHhCc-----cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            356788 999999887652     46899999998732              1245567778999999999985

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.17  E-value=0.014  Score=46.73  Aligned_cols=102  Identities=12%  Similarity=0.114  Sum_probs=63.2

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc---hHHHHHHHhhcCC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLKYSE   99 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~~~~   99 (194)
                      ..++++||-+|+| .|..++.+|+... ..+|++++.+++..+.+++    .+..   .++..+   ..++...+... .
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~-~  263 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMDI-T  263 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHHH-T
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHHH-h
Confidence            3456799999965 3667778888752 2599999999988877663    3532   222222   22222222111 0


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ....+|+||-.....   ..++.+++.|+++|.++.-.
T Consensus       264 ~g~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          264 HGRGADFILEATGDS---RALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             TTSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCcEEEECCCCH---HHHHHHHHHHhcCCEEEEEe
Confidence            123699887543222   34677889999999998754

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.13  E-value=0.01  Score=46.69  Aligned_cols=98  Identities=10%  Similarity=0.064  Sum_probs=64.4

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec---chHHHHHHHhhcC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYS   98 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~   98 (194)
                      ..++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++.   .+..  ..+-..   +..+.+....   
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~~---~g~~--~~~d~~~~~~~~~~~~~~~---  222 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKTK---FGFD--DAFNYKEESDLTAALKRCF---  222 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT---SCCS--EEEETTSCSCSHHHHHHHC---
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHH---cCCc--eEEecCCHHHHHHHHHHHh---
Confidence            446789999997  5677888888764  56999999998777766532   3432  112111   2333333331   


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                        .+.+|+++-....    ..++.+++.|+++|.++.-.
T Consensus       223 --~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          223 --PNGIDIYFENVGG----KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             --TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             --CCCCcEEEECCCH----HHHHHHHHHHhcCCEEEEEc
Confidence              2479988765432    36788899999999998743

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.10  E-value=0.045  Score=43.12  Aligned_cols=93  Identities=16%  Similarity=0.208  Sum_probs=64.2

Q ss_pred             HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ...++++||-+|+|. |..+..+|+..  +.+|++++.+++..+.+++    .|.. .  ++ .+..    .+      .
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~-~--v~-~~~~----~~------~  232 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALS----MGVK-H--FY-TDPK----QC------K  232 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHH----TTCS-E--EE-SSGG----GC------C
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHh----cCCC-e--ec-CCHH----HH------h
Confidence            345678999999875 77888888875  4699999999998887764    4533 2  22 3321    11      2


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ..+|+||-......   .++.+++.|+++|.++.-..
T Consensus       233 ~~~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          233 EELDFIISTIPTHY---DLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             SCEEEEEECCCSCC---CHHHHHTTEEEEEEEEECCC
T ss_pred             cCCCEEEECCCcHH---HHHHHHHHHhcCCEEEEECC
Confidence            37998875433322   36678899999999998543

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=96.07  E-value=0.02  Score=45.24  Aligned_cols=99  Identities=11%  Similarity=0.075  Sum_probs=63.2

Q ss_pred             HHcCC--CeEEEEcc--cccHHHHHHHhhCCCCC-EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe--cchHHHHHHHh
Q 029414           23 RLVNA--KKTIEIGV--FTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLL   95 (194)
Q Consensus        23 ~~~~~--~~vLeiG~--G~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~   95 (194)
                      ...++  ++||-.|+  |.|..+..++...  +. +|++++.+++..+.+++.   .+..  ..+-.  .+..+.+.+..
T Consensus       155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~~---~g~~--~~~d~~~~~~~~~~~~~~  227 (357)
T 2zb4_A          155 HITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTSE---LGFD--AAINYKKDNVAEQLRESC  227 (357)
T ss_dssp             CCCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHT---SCCS--EEEETTTSCHHHHHHHHC
T ss_pred             CCCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHH---cCCc--eEEecCchHHHHHHHHhc
Confidence            34466  89999997  5566777777764  45 999999988776665542   3432  11111  12223333321


Q ss_pred             hcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           96 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                           .+.+|+++-...    ...++.+++.|+++|.++.-.
T Consensus       228 -----~~~~d~vi~~~G----~~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          228 -----PAGVDVYFDNVG----GNISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             -----TTCEEEEEESCC----HHHHHHHHHTEEEEEEEEECC
T ss_pred             -----CCCCCEEEECCC----HHHHHHHHHHhccCcEEEEEC
Confidence                 237998876543    256788899999999998754

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.07  E-value=0.039  Score=42.77  Aligned_cols=76  Identities=13%  Similarity=0.068  Sum_probs=52.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ...+++|+.||.|..++.+..+.- ... +.++|+++.+.+..+.++     + ...++.+|..++...-..+   .+.+
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~-~~~~v~a~E~d~~a~~ty~~N~-----~-~~~~~~~DI~~i~~~~i~~---~~~~   84 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGI-QVDRYIASEVCEDSITVGMVRH-----Q-GKIMYVGDVRSVTQKHIQE---WGPF   84 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTB-CEEEEEEECCCHHHHHHHHHHT-----T-TCEEEECCGGGCCHHHHHH---TCCC
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCC-ccceEEEEECCHHHHHHHHHhC-----C-CCceeCCChHHccHHHhcc---cCCc
Confidence            445899999999999999877532 222 689999998887777665     2 3456778877643221111   2579


Q ss_pred             eEEEEeC
Q 029414          105 DYAFVDA  111 (194)
Q Consensus       105 D~i~id~  111 (194)
                      |+++.+.
T Consensus        85 Dll~ggp   91 (295)
T 2qrv_A           85 DLVIGGS   91 (295)
T ss_dssp             SEEEECC
T ss_pred             CEEEecC
Confidence            9998764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.03  E-value=0.016  Score=45.96  Aligned_cols=100  Identities=16%  Similarity=0.140  Sum_probs=62.4

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++++||-.|+  |.|..+..+++..  +.+|++++.+++..+.+++    .+...-+.....+..+.+.+..    ..
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~----~~  237 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV----GE  237 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH----CT
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHH----cCCCEEEeCCCchHHHHHHHHc----CC
Confidence            345789999996  5677777788764  5799999999887775543    3432111111112222222221    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ..+|+++-....    ..+..+++.|+++|.++.-.
T Consensus       238 ~~~D~vi~~~G~----~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          238 KGIDIIIEMLAN----VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             TCEEEEEESCHH----HHHHHHHHHEEEEEEEEECC
T ss_pred             CCcEEEEECCCh----HHHHHHHHhccCCCEEEEEe
Confidence            479988754322    34677889999999998754

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.02  E-value=0.0091  Score=47.06  Aligned_cols=98  Identities=12%  Similarity=0.131  Sum_probs=63.8

Q ss_pred             cCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcE-EEEecchHHHHHHHhhcCCCC
Q 029414           25 VNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI-NFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        25 ~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      .++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .+.. .+ .....+..+.+.+..    ..
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~ga~-~~~d~~~~~~~~~~~~~~----~~  233 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKA----LGAD-ETVNYTHPDWPKEVRRLT----GG  233 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCS-EEEETTSTTHHHHHHHHT----TT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCC-EEEcCCcccHHHHHHHHh----CC
Confidence            45689999998  5678888888874  5699999999888877764    2432 11 111112222233321    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ..+|+++-... .   ..++.+++.|+++|.++.-.
T Consensus       234 ~~~d~vi~~~g-~---~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          234 KGADKVVDHTG-A---LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             TCEEEEEESSC-S---SSHHHHHHHEEEEEEEEESS
T ss_pred             CCceEEEECCC-H---HHHHHHHHhhccCCEEEEEe
Confidence            47998886554 2   24677889999999998743

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.97  E-value=0.15  Score=40.16  Aligned_cols=115  Identities=11%  Similarity=0.131  Sum_probs=72.9

Q ss_pred             HHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--------------------CCCcE
Q 029414           21 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--------------------VDHKI   80 (194)
Q Consensus        21 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--------------------~~~~v   80 (194)
                      .+...+...|+.+|||.......+....+ +.+++-+|. |+.++.-++.+...+                    .+++.
T Consensus        92 fl~~~~~~qVV~LGaGlDTr~~RL~~~~~-~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  169 (334)
T 1rjd_A           92 FLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRY  169 (334)
T ss_dssp             HHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSE
T ss_pred             HHHHCCCcEEEEeCCCCccHHHHhcCcCC-CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCce
Confidence            33334567899999999988888876544 566666776 777777666666542                    13578


Q ss_pred             EEEecchHH--HHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecc
Q 029414           81 NFIESEALS--VLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        81 ~~~~~d~~~--~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +++..|..+  .+..+...........+++..+.     .+....+++.+.... |+|.+++-+.
T Consensus       170 ~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~  233 (334)
T 1rjd_A          170 KLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDP  233 (334)
T ss_dssp             EEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred             EEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEec
Confidence            899888865  23332221111245677777765     345566777777766 6676654343

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.96  E-value=0.056  Score=42.56  Aligned_cols=96  Identities=18%  Similarity=0.133  Sum_probs=62.6

Q ss_pred             CCCeEEEEc-c-cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           26 NAKKTIEIG-V-FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        26 ~~~~vLeiG-~-G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ++++||-+| + +.|..+..+|+..  +.+|++++.+++..+.+++    .+.. .+--...+..+.+...     ..+.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~-----~~~g  217 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKK----MGAD-IVLNHKESLLNQFKTQ-----GIEL  217 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHH----HTCS-EEECTTSCHHHHHHHH-----TCCC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCc-EEEECCccHHHHHHHh-----CCCC
Confidence            578999994 3 3577888888875  5699999999988887776    2432 1111112333333333     1357


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|+++-...   ....++.+++.|+++|.++.-
T Consensus       218 ~Dvv~d~~g---~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          218 VDYVFCTFN---TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEEEEESSC---HHHHHHHHHHHEEEEEEEEES
T ss_pred             ccEEEECCC---chHHHHHHHHHhccCCEEEEE
Confidence            998875332   234568888999999999763

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.95  E-value=0.012  Score=45.56  Aligned_cols=54  Identities=19%  Similarity=0.131  Sum_probs=39.9

Q ss_pred             CcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc---c--------------------cHHHHHHHHhcccCCeEEE
Q 029414           78 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N--------------------YCNYHERLMKLLKVGGIAV  134 (194)
Q Consensus        78 ~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~---~--------------------~~~~~~~~~~~L~~gG~lv  134 (194)
                      .+++++++|+.+.+..+     ..++||+|++|++..   .                    ....++.+.++|+|||.++
T Consensus        20 ~~~~i~~gD~~~~l~~l-----~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~   94 (297)
T 2zig_A           20 GVHRLHVGDAREVLASF-----PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLV   94 (297)
T ss_dssp             -CEEEEESCHHHHHTTS-----CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCCEEEECcHHHHHhhC-----CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence            36899999999876654     146899999998621   1                    1235677889999999997


Q ss_pred             Ee
Q 029414          135 YD  136 (194)
Q Consensus       135 ~~  136 (194)
                      +.
T Consensus        95 i~   96 (297)
T 2zig_A           95 IV   96 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.90  E-value=0.03  Score=44.09  Aligned_cols=96  Identities=15%  Similarity=0.087  Sum_probs=62.6

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++++||-+|+  |.|..+..+|+..  +.+|+++ .+++.++.+++    .+.. .+. ...+..+.+....    ..
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~~----lGa~-~i~-~~~~~~~~~~~~~----~~  214 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYVRD----LGAT-PID-ASREPEDYAAEHT----AG  214 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHHHH----HTSE-EEE-TTSCHHHHHHHHH----TT
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHHHH----cCCC-Eec-cCCCHHHHHHHHh----cC
Confidence            345789999993  4678888888875  5689999 88877766654    3533 222 2223333333321    13


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+|+++-....    ..++.+++.|+++|.++.-
T Consensus       215 ~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          215 QGFDLVYDTLGG----PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             SCEEEEEESSCT----HHHHHHHHHEEEEEEEEES
T ss_pred             CCceEEEECCCc----HHHHHHHHHHhcCCeEEEE
Confidence            579987754332    4678888999999999974

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.90  E-value=0.015  Score=45.85  Aligned_cols=95  Identities=11%  Similarity=0.019  Sum_probs=64.8

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      ..+++|+.||+|..++.+....  -..+.++|+++.+.+..+.++...     .   .+|..++....      ...+|+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~------~~~~D~   74 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKT------IPDHDI   74 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGG------SCCCSE
T ss_pred             CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhh------CCCCCE
Confidence            4689999999999999998752  245788999999999988887321     1   57776643321      256999


Q ss_pred             EEEeCCc------------cc-----cHHHHHHHHhcccCCeEEEEeccc
Q 029414          107 AFVDADK------------DN-----YCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       107 i~id~~~------------~~-----~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ++.+.+.            .+     +..+ -.+.+.++|. ++++.|+.
T Consensus        75 l~~gpPCQ~fS~ag~~~g~~d~r~~L~~~~-~r~i~~~~P~-~~~~ENV~  122 (327)
T 2c7p_A           75 LCAGFPCQAFSISGKQKGFEDSRGTLFFDI-ARIVREKKPK-VVFMENVK  122 (327)
T ss_dssp             EEEECCCTTTCTTSCCCGGGSTTSCHHHHH-HHHHHHHCCS-EEEEEEEG
T ss_pred             EEECCCCCCcchhcccCCCcchhhHHHHHH-HHHHHhccCc-EEEEeCcH
Confidence            9988540            11     1222 3344667884 77777764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.88  E-value=0.035  Score=43.95  Aligned_cols=99  Identities=20%  Similarity=0.124  Sum_probs=63.6

Q ss_pred             HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH-HHHHHHhhcCCC
Q 029414           23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL-SVLDQLLKYSEN  100 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~~  100 (194)
                      ...++++||-+|+|. |..+..+|+..  +.+|++++.+++..+.+++    .+..   .++..... +....+      
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~------  240 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKY------  240 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHS------
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH----cCCC---EEEcCcCchHHHHHh------
Confidence            344678999999753 67777888764  4689999999998888765    2432   22222212 233333      


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+.+|+|+-..... ....++.+++.|+++|.++.-.
T Consensus       241 ~~~~D~vid~~g~~-~~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          241 FDTFDLIVVCASSL-TDIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             CSCEEEEEECCSCS-TTCCTTTGGGGEEEEEEEEECC
T ss_pred             hcCCCEEEECCCCC-cHHHHHHHHHHhcCCCEEEEec
Confidence            25799887544330 0123566789999999998743

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.80  E-value=0.021  Score=45.17  Aligned_cols=100  Identities=8%  Similarity=0.047  Sum_probs=62.4

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++++||-.|+  |.|..+..++...  +.+|++++.+++.++.+++.    +...-+.....+..+.+.+..    ..
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~----~~  229 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEKL----GAAAGFNYKKEDFSEATLKFT----KG  229 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT----TT
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----CCcEEEecCChHHHHHHHHHh----cC
Confidence            345689999984  5677777777764  57999999998887776432    422111111122223222221    12


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ..+|+++-.....    .++.+++.|+++|.++.-.
T Consensus       230 ~~~d~vi~~~G~~----~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          230 AGVNLILDCIGGS----YWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             SCEEEEEESSCGG----GHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEEECCCch----HHHHHHHhccCCCEEEEEe
Confidence            4699887654432    3667789999999998854

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.58  E-value=0.095  Score=35.51  Aligned_cols=94  Identities=6%  Similarity=-0.033  Sum_probs=58.3

Q ss_pred             CeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCce
Q 029414           28 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF  104 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~f  104 (194)
                      .+|+-+|+|  ..+..+++.+. .+..|+.+|.+++.++.+++    .    .+.++.+|+.+  .+...     .....
T Consensus         8 ~~viIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~----g~~~i~gd~~~~~~l~~a-----~i~~a   72 (140)
T 3fwz_A            8 NHALLVGYG--RVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R----GVRAVLGNAANEEIMQLA-----HLECA   72 (140)
T ss_dssp             SCEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T----TCEEEESCTTSHHHHHHT-----TGGGC
T ss_pred             CCEEEECcC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c----CCCEEECCCCCHHHHHhc-----CcccC
Confidence            568889885  44444444331 25689999999988776653    2    45677888654  33332     12578


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |++++...........-...+.+.|+..++..
T Consensus        73 d~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           73 KWLILTIPNGYEAGEIVASARAKNPDIEIIAR  104 (140)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             CEEEEECCChHHHHHHHHHHHHHCCCCeEEEE
Confidence            99987654333333333445777788877763

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.53  E-value=0.029  Score=44.11  Aligned_cols=96  Identities=17%  Similarity=0.149  Sum_probs=62.1

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCC-EEEEEeCCcchHHhHHHHHHHcCCCCcE-EEEecchHHHHHHHhhcCCCCC
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKI-NFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ++++||-+|+|. |..+..+|+..  +. +|++++.+++..+.+++. .    . .+ .....+..+.+.++.     ..
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~l-a----~-~v~~~~~~~~~~~~~~~~-----~~  230 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRAS--GAGPILVSDPNPYRLAFARPY-A----D-RLVNPLEEDLLEVVRRVT-----GS  230 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHGGGTTT-C----S-EEECTTTSCHHHHHHHHH-----SS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-H----H-hccCcCccCHHHHHHHhc-----CC
Confidence            678999999853 66777788875  45 899999998888777653 1    1 11 101123333333321     25


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+|+++-....   ...++.+++.|+++|.++.-.
T Consensus       231 g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          231 GVEVLLEFSGN---EAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             CEEEEEECSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence            79988754322   345778889999999998743

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=95.24  E-value=0.24  Score=39.33  Aligned_cols=98  Identities=10%  Similarity=0.076  Sum_probs=61.7

Q ss_pred             cCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           25 VNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        25 ~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      .++++||-+|+  +.|..++.+|+..  +.+|+++. +++..+.+++    .|...-+.....+..+.+..+.     .+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~--Ga~Vi~~~-~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t-----~g  230 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS--GYIPIATC-SPHNFDLAKS----RGAEEVFDYRAPNLAQTIRTYT-----KN  230 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHHH----TTCSEEEETTSTTHHHHHHHHT-----TT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe-CHHHHHHHHH----cCCcEEEECCCchHHHHHHHHc-----cC
Confidence            56789999998  3788888899875  56888874 7777665543    4543112222233333333331     24


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcc-cCCeEEEEec
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVYDN  137 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L-~~gG~lv~~~  137 (194)
                      .+|++|-...   ....++.+++.| +++|.++.-.
T Consensus       231 ~~d~v~d~~g---~~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          231 NLRYALDCIT---NVESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCCEEEESSC---SHHHHHHHHHHSCTTCEEEEESS
T ss_pred             CccEEEECCC---chHHHHHHHHHhhcCCCEEEEEe
Confidence            5998774332   234567788888 6999998754

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.03  E-value=0.044  Score=42.93  Aligned_cols=57  Identities=14%  Similarity=0.207  Sum_probs=42.9

Q ss_pred             HHHHHHHH--HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc---chHHhHHHHHHHcC
Q 029414           16 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR---ETYEIGLPIIKKAG   75 (194)
Q Consensus        16 ~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~---~~~~~a~~~~~~~~   75 (194)
                      +++..++.  ..++..|||..||+|..+......   +-+.+++|+++   ...+.+++++...+
T Consensus       230 ~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          230 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            34444443  346789999999999988887776   56999999999   99999999987665

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=94.97  E-value=0.18  Score=39.97  Aligned_cols=95  Identities=20%  Similarity=0.176  Sum_probs=59.9

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ++++||-+|+|. |..++.+|+..  +.+|++++.+++..+.+++.   .+..   .++.....+.+...      .+.+
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~---lGa~---~v~~~~~~~~~~~~------~~~~  252 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEALKN---FGAD---SFLVSRDQEQMQAA------AGTL  252 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHHT---SCCS---EEEETTCHHHHHHT------TTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHh---cCCc---eEEeccCHHHHHHh------hCCC
Confidence            668999999753 56677777764  46999999998877765532   3432   22222222333332      3579


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |+|+-......   .++.+++.|+++|.++.-.
T Consensus       253 D~vid~~g~~~---~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          253 DGIIDTVSAVH---PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             EEEEECCSSCC---CSHHHHHHEEEEEEEEECC
T ss_pred             CEEEECCCcHH---HHHHHHHHHhcCCEEEEEc
Confidence            98875543222   2345678899999998743

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.87  E-value=0.051  Score=42.55  Aligned_cols=57  Identities=9%  Similarity=0.028  Sum_probs=44.9

Q ss_pred             HHHHHHH--HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC
Q 029414           17 LMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV   76 (194)
Q Consensus        17 ~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~   76 (194)
                      ++..++.  ..++..|||..||+|..+......   +.+.+++|+++...+.+++++...+.
T Consensus       241 l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~  299 (323)
T 1boo_A          241 LPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNNI  299 (323)
T ss_dssp             HHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhccc
Confidence            4444443  346789999999999988777664   56999999999999999999876653

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.72  E-value=0.097  Score=41.87  Aligned_cols=107  Identities=12%  Similarity=0.026  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC-cEEEEecchHHHHHH
Q 029414           15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQ   93 (194)
Q Consensus        15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~   93 (194)
                      +-+|..+.......+||.++.+.|..+.+++..     .++.+.-+--.....+.|++.+++++ ++++.....     .
T Consensus        27 ~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~-----~   96 (375)
T 4dcm_A           27 EYLLQQLDDTEIRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLDSTA-----D   96 (375)
T ss_dssp             HHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETTS-----C
T ss_pred             HHHHHhhhhccCCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccccc-----c
Confidence            334444333334468999999999999999854     33455434445567788999998873 466654211     1


Q ss_pred             HhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhcccCCeEEEEec
Q 029414           94 LLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +      ...||++++..++  ......+..+...|++|+.|++..
T Consensus        97 ~------~~~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g  136 (375)
T 4dcm_A           97 Y------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA  136 (375)
T ss_dssp             C------CSSCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred             c------ccCCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence            1      3679999988763  344556788889999999987743

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.65  E-value=0.13  Score=40.55  Aligned_cols=95  Identities=21%  Similarity=0.251  Sum_probs=59.9

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ++++||-+|+|. |..++.+|+..  +.+|++++.+++..+.+++   ..+.. .+ +-..+ .+.+.+.      .+.+
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~-~v-i~~~~-~~~~~~~------~~g~  245 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSNKKREEALQ---DLGAD-DY-VIGSD-QAKMSEL------ADSL  245 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHHT---TSCCS-CE-EETTC-HHHHHHS------TTTE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH---HcCCc-ee-ecccc-HHHHHHh------cCCC
Confidence            678999999753 56677777764  4699999999877766552   23533 21 11122 2333332      3579


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |+++-......   .++.+++.|+++|.++.-.
T Consensus       246 D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          246 DYVIDTVPVHH---ALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             EEEEECCCSCC---CSHHHHTTEEEEEEEEECS
T ss_pred             CEEEECCCChH---HHHHHHHHhccCCEEEEeC
Confidence            98875433222   2456778999999998753

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=94.64  E-value=0.052  Score=42.79  Aligned_cols=75  Identities=13%  Similarity=0.094  Sum_probs=51.5

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  107 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i  107 (194)
                      -+++|+.||.|..++.+..+.-....+.++|+++.+.+..+.|+.      ...++.+|..++...-..    ...+|++
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~----~~~~D~l   73 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIK----KWNVDTI   73 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHH----HTTCCEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhc----cCCCCEE
Confidence            479999999999999987753101357899999988888877763      234566777664322111    1368999


Q ss_pred             EEeCC
Q 029414          108 FVDAD  112 (194)
Q Consensus       108 ~id~~  112 (194)
                      +...+
T Consensus        74 ~ggpP   78 (333)
T 4h0n_A           74 LMSPP   78 (333)
T ss_dssp             EECCC
T ss_pred             EecCC
Confidence            87643

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=94.62  E-value=0.085  Score=41.55  Aligned_cols=97  Identities=13%  Similarity=0.085  Sum_probs=56.0

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++++||-.|+  +.|..+..+|+... ..+|++++ +++..+.++     .+...-+. ...+..+.+....     .
T Consensus       140 ~~~g~~VlV~Ga~G~vG~~a~qla~~~g-~~~V~~~~-~~~~~~~~~-----~ga~~~~~-~~~~~~~~~~~~~-----~  206 (349)
T 4a27_A          140 LREGMSVLVHSAGGGVGQAVAQLCSTVP-NVTVFGTA-STFKHEAIK-----DSVTHLFD-RNADYVQEVKRIS-----A  206 (349)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHTTST-TCEEEEEE-CGGGHHHHG-----GGSSEEEE-TTSCHHHHHHHHC-----T
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcC-CcEEEEeC-CHHHHHHHH-----cCCcEEEc-CCccHHHHHHHhc-----C
Confidence            346789999997  35677788887754 56888887 444444333     34331122 2223333333331     3


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +.+|++|-.....    .++.+++.|+++|.++.-.
T Consensus       207 ~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          207 EGVDIVLDCLCGD----NTGKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             TCEEEEEEECC-----------CTTEEEEEEEEEEC
T ss_pred             CCceEEEECCCch----hHHHHHHHhhcCCEEEEEC
Confidence            5799887543322    2367889999999999754

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=94.54  E-value=0.11  Score=42.59  Aligned_cols=100  Identities=13%  Similarity=0.071  Sum_probs=63.2

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch--------------
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA--------------   87 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--------------   87 (194)
                      ..++++||-+|+  +.|..++.+|+..  +.++++++.+++.++.+++    .|...-+.....|.              
T Consensus       226 ~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~~~  299 (456)
T 3krt_A          226 MKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPKEW  299 (456)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchHHH
Confidence            346789999996  4577888888875  5789999988888877754    34321111111110              


Q ss_pred             ---HHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           88 ---LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        88 ---~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                         .+.+.++.    ....+|++|-....    ..++.+++.|+++|.++.-.
T Consensus       300 ~~~~~~i~~~t----~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          300 KRFGKRIRELT----GGEDIDIVFEHPGR----ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHH----TSCCEEEEEECSCH----HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHHHHh----CCCCCcEEEEcCCc----hhHHHHHHHhhCCcEEEEEe
Confidence               02222221    12579977643322    56788899999999999843

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=94.36  E-value=0.11  Score=40.53  Aligned_cols=92  Identities=9%  Similarity=0.075  Sum_probs=58.0

Q ss_pred             eEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch-HHHHHHHhhcCCCCCcee
Q 029414           29 KTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        29 ~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~~~~fD  105 (194)
                      +||-+|+  |.|..+..+|+..  +.++++++.+++..+.+++    .+.. .+ +-..+. .+....+     ..+.+|
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa~-~~-i~~~~~~~~~~~~~-----~~~~~d  218 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGAK-EV-LAREDVMAERIRPL-----DKQRWA  218 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTCS-EE-EECC---------C-----CSCCEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----cCCc-EE-EecCCcHHHHHHHh-----cCCccc
Confidence            7999996  5677888888875  4689999999888877754    3532 11 111111 1111221     124799


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ++|-....    ..++.+++.++++|.++.-.
T Consensus       219 ~vid~~g~----~~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          219 AAVDPVGG----RTLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             EEEECSTT----TTHHHHHHTEEEEEEEEECS
T ss_pred             EEEECCcH----HHHHHHHHhhccCCEEEEEe
Confidence            87744332    24677889999999998754

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.33  E-value=0.056  Score=42.51  Aligned_cols=75  Identities=13%  Similarity=-0.060  Sum_probs=51.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEE-EEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH-HHhhcCCCCCc
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQI-TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGS  103 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v-~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~~~~  103 (194)
                      ++-+++|+.||.|..++.+..+.-+...+ .++|+++.+.+..+.|+...       ++.+|..++.. .+.     ...
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~i~-----~~~   76 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQIE-----SLN   76 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHHHH-----HTC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHHhc-----cCC
Confidence            34589999999999999997752101346 69999999999888887321       45566655322 221     136


Q ss_pred             eeEEEEeCC
Q 029414          104 FDYAFVDAD  112 (194)
Q Consensus       104 fD~i~id~~  112 (194)
                      +|+++...+
T Consensus        77 ~Dil~ggpP   85 (327)
T 3qv2_A           77 CNTWFMSPP   85 (327)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEecCC
Confidence            899987654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.28  E-value=0.49  Score=31.32  Aligned_cols=94  Identities=14%  Similarity=0.124  Sum_probs=53.2

Q ss_pred             CCeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCc
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS  103 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~  103 (194)
                      ..+|+-+|+  |..+..++..+. .+.+|+.+|.+++..+..++.   .    .+.++.+|..+  .+...     ....
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~----~~~~~~~d~~~~~~l~~~-----~~~~   69 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDA-----GIED   69 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHT-----TTTT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---c----CcEEEEcCCCCHHHHHHc-----Cccc
Confidence            357888887  555555554432 256899999988766544432   1    24456666532  22221     1256


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEE
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV  134 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv  134 (194)
                      +|+|++..........+..+.+.++++-+++
T Consensus        70 ~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~  100 (140)
T 1lss_A           70 ADMYIAVTGKEEVNLMSSLLAKSYGINKTIA  100 (140)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEEeeCCchHHHHHHHHHHHcCCCEEEE
Confidence            8999987554333334444556677764443

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=94.23  E-value=0.2  Score=39.57  Aligned_cols=106  Identities=13%  Similarity=0.076  Sum_probs=58.4

Q ss_pred             HcCC-CeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe---cchHHHHHHHhhc
Q 029414           24 LVNA-KKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKY   97 (194)
Q Consensus        24 ~~~~-~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~   97 (194)
                      ..++ ++||-+|+  +.|..++.+|+..  +.+++++..+++..+..++.+...|...-+....   .+..+.+.++..+
T Consensus       164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~  241 (364)
T 1gu7_A          164 LTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQ  241 (364)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHH
T ss_pred             cCCCCcEEEECCCCcHHHHHHHHHHHHC--CCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhc
Confidence            3356 89999986  5577888888874  5688888766554222223334456431111110   1222223322100


Q ss_pred             CCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           98 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                        ....+|++|-....   .... .+++.|+++|.++.-.
T Consensus       242 --~~~g~Dvvid~~G~---~~~~-~~~~~l~~~G~~v~~g  275 (364)
T 1gu7_A          242 --SGGEAKLALNCVGG---KSST-GIARKLNNNGLMLTYG  275 (364)
T ss_dssp             --HTCCEEEEEESSCH---HHHH-HHHHTSCTTCEEEECC
T ss_pred             --cCCCceEEEECCCc---hhHH-HHHHHhccCCEEEEec
Confidence              02579988743322   1223 6679999999998854

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=94.19  E-value=0.08  Score=40.99  Aligned_cols=87  Identities=13%  Similarity=0.126  Sum_probs=57.0

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .++++||-+|+|. |..+..+|+..  +.+|++++ +++..+.+++    .|..   .++ .|    ...+      .+.
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~-~~~~~~~~~~----lGa~---~v~-~d----~~~v------~~g  199 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNA--GYVVDLVS-ASLSQALAAK----RGVR---HLY-RE----PSQV------TQK  199 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHH--TCEEEEEC-SSCCHHHHHH----HTEE---EEE-SS----GGGC------CSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEE-ChhhHHHHHH----cCCC---EEE-cC----HHHh------CCC
Confidence            4578999999953 77888888875  46999999 9988888765    2422   222 23    1222      367


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|++|-.....    .+..+++.|+++|.++.-
T Consensus       200 ~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          200 YFAIFDAVNSQ----NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             EEEEECC-----------TTGGGEEEEEEEEEE
T ss_pred             ccEEEECCCch----hHHHHHHHhcCCCEEEEE
Confidence            99877322221    235678999999999875

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=94.12  E-value=0.24  Score=40.37  Aligned_cols=99  Identities=14%  Similarity=0.035  Sum_probs=62.5

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch--------------
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA--------------   87 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--------------   87 (194)
                      ..++++||-.|+  |.|..++.+|+..  +.++++++.+++.++.+++    .+...-+.....+.              
T Consensus       218 ~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~~  291 (447)
T 4a0s_A          218 MKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVET  291 (447)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccchh
Confidence            446789999996  4577888888874  5789999988887776643    35432111111110              


Q ss_pred             ----HHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           88 ----LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        88 ----~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                          .+.+....     ...+|+++-....    ..++.+++.++++|.++.-.
T Consensus       292 ~~~~~~~v~~~~-----g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          292 GRKLAKLVVEKA-----GREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHH-----SSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESC
T ss_pred             hhHHHHHHHHHh-----CCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEe
Confidence                11122221     2579988754332    35788889999999999854

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=93.98  E-value=0.18  Score=41.74  Aligned_cols=59  Identities=7%  Similarity=-0.133  Sum_probs=43.3

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   91 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   91 (194)
                      -+++|+.||.|..++.|..+.  -..+.++|+++.+.+..+.++.   ..+...++.+|..++.
T Consensus        89 ~~viDLFaG~GGlslG~~~aG--~~~v~avE~d~~A~~ty~~N~~---~~p~~~~~~~DI~~i~  147 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIG--GQCVFTSEWNKHAVRTYKANHY---CDPATHHFNEDIRDIT  147 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTT--EEEEEEECCCHHHHHHHHHHSC---CCTTTCEEESCTHHHH
T ss_pred             ceEEEecCCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHhcc---cCCCcceeccchhhhh
Confidence            489999999999999997642  1347889999988877776652   1124456778887654

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=93.92  E-value=0.2  Score=39.01  Aligned_cols=95  Identities=13%  Similarity=-0.052  Sum_probs=62.8

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414           29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  108 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~  108 (194)
                      +|+|+.||.|..++.|-.+.  -..+.++|+++.+.+..+.++     +  -.++.+|..++...-      .+..|+++
T Consensus         2 kvidLFsG~GG~~~G~~~aG--~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~------~~~~D~l~   66 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDE------FPKCDGII   66 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTT--CEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGG------SCCCSEEE
T ss_pred             eEEEeCcCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhh------CCcccEEE
Confidence            69999999999999887652  234678999999988887775     2  256778886653221      36789887


Q ss_pred             EeCC------------cccc-HHHH---HHHHhcccCCeEEEEeccc
Q 029414          109 VDAD------------KDNY-CNYH---ERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       109 id~~------------~~~~-~~~~---~~~~~~L~~gG~lv~~~~~  139 (194)
                      ...+            ..+. ...+   -.+.+.++|. ++++.|+.
T Consensus        67 ggpPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk-~~~~ENV~  112 (331)
T 3ubt_Y           67 GGPPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI-FFLAENVK  112 (331)
T ss_dssp             CCCCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS-EEEEEECC
T ss_pred             ecCCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCe-EEEeeeec
Confidence            5533            1111 1222   2344667884 77788874

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=93.91  E-value=0.45  Score=37.28  Aligned_cols=96  Identities=9%  Similarity=-0.031  Sum_probs=57.4

Q ss_pred             CeEEEE-cc-cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           28 KKTIEI-GV-FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        28 ~~vLei-G~-G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++||-. |+ |.|..+..+|+..  +.+|++++.+++..+.+++    .+...-+.....+..+.+.+...    ...+|
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~~----~~g~D  235 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEE--GFRPIVTVRRDEQIALLKD----IGAAHVLNEKAPDFEATLREVMK----AEQPR  235 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHH----HTCSEEEETTSTTHHHHHHHHHH----HHCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCcHHHHHHHHHHhc----CCCCc
Confidence            566654 33 3466777777764  5699999999998887764    34321111111233333333211    13699


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +++-....    ..++.+++.|+++|.++.-.
T Consensus       236 ~vid~~g~----~~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          236 IFLDAVTG----PLASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             EEEESSCH----HHHHHHHHHSCTTCEEEECC
T ss_pred             EEEECCCC----hhHHHHHhhhcCCCEEEEEe
Confidence            87754322    23477889999999999854

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=93.87  E-value=0.15  Score=40.52  Aligned_cols=97  Identities=20%  Similarity=0.171  Sum_probs=59.0

Q ss_pred             HcCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG--~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++++||-+|  .|.|..+..+|+..  +.+|++++ +++..+.++    +.|..   .++..+..+....+..    .
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~--Ga~Vi~~~-~~~~~~~~~----~lGa~---~v~~~~~~~~~~~~~~----~  246 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAW--DAHVTAVC-SQDASELVR----KLGAD---DVIDYKSGSVEEQLKS----L  246 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHH----HTTCS---EEEETTSSCHHHHHHT----S
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEe-ChHHHHHHH----HcCCC---EEEECCchHHHHHHhh----c
Confidence            44578999999  34677888888875  46899888 666655543    34533   1222111122222221    2


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+|+++-.....  ...++.+++.++++|.++.-
T Consensus       247 ~g~D~vid~~g~~--~~~~~~~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          247 KPFDFILDNVGGS--TETWAPDFLKKWSGATYVTL  279 (375)
T ss_dssp             CCBSEEEESSCTT--HHHHGGGGBCSSSCCEEEES
T ss_pred             CCCCEEEECCCCh--hhhhHHHHHhhcCCcEEEEe
Confidence            5799887543221  13456778999999999874

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.65  E-value=0.33  Score=32.58  Aligned_cols=93  Identities=11%  Similarity=0.118  Sum_probs=54.5

Q ss_pred             CCeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCc
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS  103 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~  103 (194)
                      .++|+-+|+  |..+..+++.+. .+.+|+.+|.+++..+.+++    .    .+.++.+|..+  .+...     ....
T Consensus         6 ~~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~----~~~~~~gd~~~~~~l~~~-----~~~~   70 (141)
T 3llv_A            6 RYEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----E----GFDAVIADPTDESFYRSL-----DLEG   70 (141)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T----TCEEEECCTTCHHHHHHS-----CCTT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----C----CCcEEECCCCCHHHHHhC-----Cccc
Confidence            357899998  445555554442 25689999999987766553    1    35677777654  33332     1357


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +|++++...............+.+. ...++.
T Consensus        71 ~d~vi~~~~~~~~n~~~~~~a~~~~-~~~iia  101 (141)
T 3llv_A           71 VSAVLITGSDDEFNLKILKALRSVS-DVYAIV  101 (141)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHC-CCCEEE
T ss_pred             CCEEEEecCCHHHHHHHHHHHHHhC-CceEEE
Confidence            8999886553222233333345555 455554

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=93.55  E-value=0.15  Score=39.54  Aligned_cols=91  Identities=13%  Similarity=0.163  Sum_probs=60.0

Q ss_pred             eEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           29 KTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        29 ~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      +||-.|+  +.|..+..+|+..  +.+|++++.+++..+.+++    .|..   .++.....+....+     ..+.+|+
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~-----~~~~~d~  214 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL--GYQVAAVSGRESTHGYLKS----LGAN---RILSRDEFAESRPL-----EKQLWAG  214 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTCS---EEEEGGGSSCCCSS-----CCCCEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCC---EEEecCCHHHHHhh-----cCCCccE
Confidence            4999986  5688888899885  4699999999998888765    3532   12211111111111     1357997


Q ss_pred             EEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          107 AFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       107 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +| |....   ..++.+++.|+++|.++.-.
T Consensus       215 v~-d~~g~---~~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          215 AI-DTVGD---KVLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             EE-ESSCH---HHHHHHHHTEEEEEEEEECC
T ss_pred             EE-ECCCc---HHHHHHHHHHhcCCEEEEEe
Confidence            65 44322   36888999999999999853

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.46  E-value=0.29  Score=39.13  Aligned_cols=99  Identities=18%  Similarity=0.121  Sum_probs=57.5

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .++++|+-+|+|. |..+...+...  +.+|+++|.+++.++.+++.+   +.  .+.....+..+. .+..      ..
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l-~~~l------~~  231 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYEL-EGAV------KR  231 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHH-HHHH------HH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHH-HHHH------cC
Confidence            3578999999853 44445555554  459999999988777665433   32  222222222222 2221      35


Q ss_pred             eeEEEEeCCccc---cHHHHHHHHhcccCCeEEEEec
Q 029414          104 FDYAFVDADKDN---YCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       104 fD~i~id~~~~~---~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .|+|+.....+.   ..-+.+...+.++|||+|+--.
T Consensus       232 aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          232 ADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            898887432111   1111355678899999887643

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.45  E-value=0.33  Score=34.24  Aligned_cols=96  Identities=10%  Similarity=0.081  Sum_probs=54.7

Q ss_pred             CCeEEEEcccccHHHHHHHhhCC-C-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCC
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIP-E-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG  102 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~-~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~  102 (194)
                      ..+|+-+|+  |..+..+++.+. . +.+|+++|.+++..+.+++    .+    +.++.+|..+  .+...    ....
T Consensus        39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~----~~~~  104 (183)
T 3c85_A           39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERI----LDTG  104 (183)
T ss_dssp             TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTB----CSCC
T ss_pred             CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhc----cCCC
Confidence            347998887  555555554432 2 4579999999877665442    23    4456666543  22221    0125


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+|+|++...........-...+.+.|+..++..
T Consensus       105 ~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          105 HVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             CCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEE
Confidence            6899988554322222223344666777777763

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.34  E-value=0.73  Score=31.37  Aligned_cols=97  Identities=13%  Similarity=0.059  Sum_probs=58.8

Q ss_pred             CCeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc-chHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCC
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG  102 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~  102 (194)
                      .++|+-+|+  |..+..+++.+. .+..|+.+|.++ +..+..++..     +..+.++.+|+.+  .+...     .-.
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a-----~i~   70 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKA-----GID   70 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHH-----TTT
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHc-----Chh
Confidence            356888876  666666655542 256899999974 4444444332     2257888888754  33332     135


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ..|+|++...............+.+.|...++.
T Consensus        71 ~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           71 RCRAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             TCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             hCCEEEEecCChHHHHHHHHHHHHHCCCCEEEE
Confidence            789998875543444444555567767777766

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.21  E-value=1  Score=33.04  Aligned_cols=95  Identities=11%  Similarity=0.047  Sum_probs=60.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCc
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS  103 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~  103 (194)
                      ..++|+-+|+  |..+..+++.+...+.|+.+|.+++.++.++     .    .+.++.+|+.+  .+...     .-..
T Consensus         8 ~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~-----~----~~~~i~gd~~~~~~l~~a-----~i~~   71 (234)
T 2aef_A            8 KSRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR-----S----GANFVHGDPTRVSDLEKA-----NVRG   71 (234)
T ss_dssp             --CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH-----T----TCEEEESCTTCHHHHHHT-----TCTT
T ss_pred             CCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh-----c----CCeEEEcCCCCHHHHHhc-----Ccch
Confidence            3467888887  7888888887753333899999987665443     1    46788888764  33332     1357


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .|.+++...............+.+.|+..+++.
T Consensus        72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~  104 (234)
T 2aef_A           72 ARAVIVDLESDSETIHCILGIRKIDESVRIIAE  104 (234)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             hcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEE
Confidence            899988654333333444455777887677663

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.15  E-value=2  Score=32.02  Aligned_cols=79  Identities=9%  Similarity=0.102  Sum_probs=53.4

Q ss_pred             CCCeEEEEcc----cccH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHH
Q 029414           26 NAKKTIEIGV----FTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQL   94 (194)
Q Consensus        26 ~~~~vLeiG~----G~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~   94 (194)
                      +++++|-.|+    |.|. .+..|++.   +.+|+.++.+++..+.+.+.+++.+-. ++.++..|..+      .+...
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~---Ga~Vvi~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~   80 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQL---GAKLVFTYRKERSRKELEKLLEQLNQP-EAHLYQIDVQSDEEVINGFEQI   80 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHHHGGGTCS-SCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCC-cEEEEEccCCCHHHHHHHHHHH
Confidence            6789999994    4554 45556664   679999999999888888888766533 67778777532      12222


Q ss_pred             hhcCCCCCceeEEEEeC
Q 029414           95 LKYSENEGSFDYAFVDA  111 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~  111 (194)
                      ..+   .+..|.++.+.
T Consensus        81 ~~~---~G~iD~lvnnA   94 (256)
T 4fs3_A           81 GKD---VGNIDGVYHSI   94 (256)
T ss_dssp             HHH---HCCCSEEEECC
T ss_pred             HHH---hCCCCEEEecc
Confidence            111   37899888664

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.08  E-value=0.41  Score=37.97  Aligned_cols=97  Identities=13%  Similarity=0.141  Sum_probs=58.1

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ++++|+-+|+|. |..+...+...  +.+|+.+|.+++..+.+++....     .+.....+..+....+       ..+
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~  231 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV-------AEA  231 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH-------HTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHH-------cCC
Confidence            568999999853 44455556654  45999999999888877765532     2223333333332332       368


Q ss_pred             eEEEEeCCccc---cHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKDN---YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~~---~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+|+-....+.   ..-..+...+.+++||+++--
T Consensus       232 DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv  266 (361)
T 1pjc_A          232 DLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDV  266 (361)
T ss_dssp             SEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred             CEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEE
Confidence            98875433211   110134566889999987764

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=93.07  E-value=0.22  Score=40.62  Aligned_cols=48  Identities=15%  Similarity=0.128  Sum_probs=37.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCcchHHhHHHHHHH
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKK   73 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~   73 (194)
                      .+-+|+|+|+|.|.....+++.+.    ...+++.+|+|+...+.=++.+..
T Consensus       137 g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          137 GTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            357999999999998888765442    134899999999988877777764

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=92.91  E-value=0.38  Score=37.94  Aligned_cols=100  Identities=13%  Similarity=0.097  Sum_probs=59.5

Q ss_pred             HHcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec-c-hHHHHHHHhhcCC
Q 029414           23 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-E-ALSVLDQLLKYSE   99 (194)
Q Consensus        23 ~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d-~~~~~~~~~~~~~   99 (194)
                      ...++++||-+|+| .|..++.+|+... +.+|+++|.+++..+.+++    .|.. .  ++.. + ..+.+..+.    
T Consensus       183 ~~~~g~~VlV~GaG~vG~~avqlak~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~-~--vi~~~~~~~~~v~~~~----  250 (359)
T 1h2b_A          183 TLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGAD-H--VVDARRDPVKQVMELT----  250 (359)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTCS-E--EEETTSCHHHHHHHHT----
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCC-E--EEeccchHHHHHHHHh----
Confidence            34567899999985 2456667777752 4689999999888877653    3532 1  2221 1 222333331    


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ....+|++|-...... ...++.+++.  ++|.++.-.
T Consensus       251 ~g~g~Dvvid~~G~~~-~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          251 RGRGVNVAMDFVGSQA-TVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             TTCCEEEEEESSCCHH-HHHHGGGGEE--EEEEEEECC
T ss_pred             CCCCCcEEEECCCCch-HHHHHHHhhc--CCCEEEEEe
Confidence            1237998874432211 0156667777  899998754

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=92.90  E-value=0.46  Score=37.51  Aligned_cols=93  Identities=16%  Similarity=0.123  Sum_probs=58.3

Q ss_pred             CCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc---chHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           27 AKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR---ETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        27 ~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      +++||-+|+|. |..+..+|+..  +.+|++++.++   +..+.+++    .+.. .+.  ..+..+.+.+.      .+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~----~ga~-~v~--~~~~~~~~~~~------~~  245 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEE----TKTN-YYN--SSNGYDKLKDS------VG  245 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHH----HTCE-EEE--CTTCSHHHHHH------HC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHH----hCCc-eec--hHHHHHHHHHh------CC
Confidence            78999999842 55666677664  46999999988   66665553    3432 221  11222222221      25


Q ss_pred             ceeEEEEeCCccccHHHH-HHHHhcccCCeEEEEec
Q 029414          103 SFDYAFVDADKDNYCNYH-ERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~-~~~~~~L~~gG~lv~~~  137 (194)
                      .+|+++-......   .+ +.+++.|+++|.++.-.
T Consensus       246 ~~d~vid~~g~~~---~~~~~~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          246 KFDVIIDATGADV---NILGNVIPLLGRNGVLGLFG  278 (366)
T ss_dssp             CEEEEEECCCCCT---HHHHHHGGGEEEEEEEEECS
T ss_pred             CCCEEEECCCChH---HHHHHHHHHHhcCCEEEEEe
Confidence            7998876543322   35 77889999999998754

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=92.79  E-value=1.8  Score=32.90  Aligned_cols=101  Identities=18%  Similarity=0.276  Sum_probs=62.5

Q ss_pred             cCCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHh
Q 029414           25 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLL   95 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~   95 (194)
                      .+++.+|--|.+.|.   .+..|++.   +.+|+.++.+++.++.+.+.+   +  .++..+.+|..+      ......
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~---Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~   98 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAE---GARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVK   98 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHH
Confidence            467889999987763   44445553   789999999988777655444   3  356677777432      122221


Q ss_pred             hcCCCCCceeEEEEeCC-----------cccc-----------HHHHHHHHhcccCCeEEEEe
Q 029414           96 KYSENEGSFDYAFVDAD-----------KDNY-----------CNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~-----------~~~~-----------~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+   .++.|.++..+.           .+++           ....+.+.+.++.+|.||.-
T Consensus        99 ~~---~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni  158 (273)
T 4fgs_A           99 AE---AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT  158 (273)
T ss_dssp             HH---HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred             HH---cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence            11   378998887643           1111           12235556788888887764

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=92.77  E-value=0.5  Score=37.54  Aligned_cols=98  Identities=16%  Similarity=0.163  Sum_probs=56.5

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ++++|+-+|+|. |..+...+...  +.+|+++|.+++..+.+++.+   +.  .+.....+..+. .+..      ..+
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~l-~~~~------~~~  230 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEANI-KKSV------QHA  230 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHHH-HHHH------HHC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHHH-HHHH------hCC
Confidence            568999999852 33444445443  569999999987776655432   32  233333333332 2221      458


Q ss_pred             eEEEEeCCccc--c-HHHHHHHHhcccCCeEEEEec
Q 029414          105 DYAFVDADKDN--Y-CNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       105 D~i~id~~~~~--~-~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |+|+.......  . .-..+.+.+.+++||+|+.-.
T Consensus       231 DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          231 DLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             SEEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            98876544221  1 112456678899999887643

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=92.53  E-value=1.4  Score=35.97  Aligned_cols=102  Identities=13%  Similarity=0.198  Sum_probs=59.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHH------------HHHcCCCCcEEEEecchHHHHH
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLD   92 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~v~~~~~d~~~~~~   92 (194)
                      ..-.+|.-||+  |+.+..+|..+..+..|+++|.+++.++..++.            +...  ..++++. .|..+.+ 
T Consensus        34 ~~~mkIaVIGl--G~mG~~lA~~La~G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~--~~~l~~t-td~~ea~-  107 (432)
T 3pid_A           34 SEFMKITISGT--GYVGLSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEK--PLNFRAT-TDKHDAY-  107 (432)
T ss_dssp             -CCCEEEEECC--SHHHHHHHHHHHTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS--CCCEEEE-SCHHHHH-
T ss_pred             cCCCEEEEECc--CHHHHHHHHHHHcCCeEEEEecCHHHhhHHhccCCccccccHHHHHhhc--cCCeEEE-cCHHHHH-
Confidence            34457888887  555555554443367899999999888766542            1110  1133332 2332221 


Q ss_pred             HHhhcCCCCCceeEEEEeCCcc-----------ccHHHHHHHHhcccCCeEEEEecccccc
Q 029414           93 QLLKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        93 ~~~~~~~~~~~fD~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                               ...|+|++..+..           ......+.+.+ ++||.++|...+...|
T Consensus       108 ---------~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pg  158 (432)
T 3pid_A          108 ---------RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVG  158 (432)
T ss_dssp             ---------TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTT
T ss_pred             ---------hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChH
Confidence                     4578898865422           23455667777 8998888775544333

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=92.22  E-value=0.97  Score=34.90  Aligned_cols=93  Identities=11%  Similarity=0.005  Sum_probs=57.8

Q ss_pred             HHcCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH-HHHHHhhcCC
Q 029414           23 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKYSE   99 (194)
Q Consensus        23 ~~~~~~~vLeiG--~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~   99 (194)
                      +..++++||-+|  .+.|..+..+|+..  +.++++++ +++..+.++    +.|.+   .++..+..+ ....      
T Consensus       149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~--Ga~vi~~~-~~~~~~~~~----~lGa~---~~i~~~~~~~~~~~------  212 (321)
T 3tqh_A          149 EVKQGDVVLIHAGAGGVGHLAIQLAKQK--GTTVITTA-SKRNHAFLK----ALGAE---QCINYHEEDFLLAI------  212 (321)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEE-CHHHHHHHH----HHTCS---EEEETTTSCHHHHC------
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEe-ccchHHHHH----HcCCC---EEEeCCCcchhhhh------
Confidence            345678999996  34578888888875  46888887 444444443    34643   223222222 2222      


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                       ...+|+++-....    ..++.+++.|+++|.++.-
T Consensus       213 -~~g~D~v~d~~g~----~~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          213 -STPVDAVIDLVGG----DVGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             -CSCEEEEEESSCH----HHHHHHGGGEEEEEEEEEC
T ss_pred             -ccCCCEEEECCCc----HHHHHHHHhccCCCEEEEe
Confidence             2579987743322    2347788999999999975

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.15  E-value=0.51  Score=34.28  Aligned_cols=93  Identities=17%  Similarity=0.075  Sum_probs=58.0

Q ss_pred             eEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCcee
Q 029414           29 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFD  105 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~fD  105 (194)
                      +|+-+|+  |..+..+++.+. .+..|+.+|.+++.++...+.   .    .+.++.+|+.+  .+...     .-...|
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~----~~~~i~gd~~~~~~l~~a-----~i~~ad   67 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---L----KATIIHGDGSHKEILRDA-----EVSKND   67 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S----SSEEEESCTTSHHHHHHH-----TCCTTC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c----CCeEEEcCCCCHHHHHhc-----CcccCC
Confidence            4677776  666666665542 256899999999877654432   1    35678888764  33332     135789


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ++++...............+.+.+...++.
T Consensus        68 ~vi~~~~~d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           68 VVVILTPRDEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             EEEEecCCcHHHHHHHHHHHHHcCCCeEEE
Confidence            998866544444444555566666666665

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=92.13  E-value=0.82  Score=35.59  Aligned_cols=94  Identities=13%  Similarity=0.074  Sum_probs=62.0

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcCCCCCce
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSF  104 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~f  104 (194)
                      .++++-+|+  |..+..+++.+...+.++.+|.+++..+ +++        ..+.++.||+.+.  +...     .-+..
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~~~L~~a-----~i~~a  178 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKK-VLR--------SGANFVHGDPTRVSDLEKA-----NVRGA  178 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSCEEEEESCGGGHHH-HHH--------TTCEEEESCTTSHHHHHHT-----CSTTE
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCCcEEEEeCChhhhh-HHh--------CCcEEEEeCCCCHHHHHhc-----Chhhc
Confidence            457888886  7788888877643334999999998876 543        2578899998653  3332     13578


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |.+++........-......+.+.|+..++..
T Consensus       179 ~~vi~~~~~d~~n~~~~~~ar~~~~~~~iiar  210 (336)
T 1lnq_A          179 RAVIVDLESDSETIHCILGIRKIDESVRIIAE  210 (336)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred             cEEEEcCCccHHHHHHHHHHHHHCCCCeEEEE
Confidence            99988654333333344455778888777663

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=91.96  E-value=2.9  Score=31.03  Aligned_cols=104  Identities=6%  Similarity=-0.020  Sum_probs=63.1

Q ss_pred             CCCeEEEEccc----ccH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHH
Q 029414           26 NAKKTIEIGVF----TGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQL   94 (194)
Q Consensus        26 ~~~~vLeiG~G----~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~   94 (194)
                      +++++|-.|++    .|. .+..|++.   +.+|+.++.+....+.+++.....+- .++.++.+|..+      .+...
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~   81 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEA---GARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASI   81 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHC---CCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHH
Confidence            56789999965    343 44445553   67899999887766666666655542 268888877532      12222


Q ss_pred             hhcCCCCCceeEEEEeCCcc-----------cc---------------HHHHHHHHhcccCCeEEEEe
Q 029414           95 LKYSENEGSFDYAFVDADKD-----------NY---------------CNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~~-----------~~---------------~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ...   .+.+|.++..+...           ..               ....+.+.+.++++|.|+.-
T Consensus        82 ~~~---~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i  146 (266)
T 3oig_A           82 KEQ---VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL  146 (266)
T ss_dssp             HHH---HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred             HHH---hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence            111   25789888664311           01               12345566788888888763

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=91.83  E-value=1.4  Score=36.11  Aligned_cols=99  Identities=13%  Similarity=0.202  Sum_probs=57.3

Q ss_pred             CeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHH------------HHcCCCCcEEEEecchHHHHHHH
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPII------------KKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~------------~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      -+|--||+  |+.+..+|..+.. +.+|+++|.+++.++..++..            .+.-.+.++++- .|..+..   
T Consensus         9 ~~~~vIGl--G~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~t-td~~ea~---   82 (446)
T 4a7p_A            9 VRIAMIGT--GYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFT-TDLAEGV---   82 (446)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEE-SCHHHHH---
T ss_pred             eEEEEEcC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEE-CCHHHHH---
Confidence            46777777  5555555444422 468999999998877655421            000001233332 2332221   


Q ss_pred             hhcCCCCCceeEEEEeCCcc-----------ccHHHHHHHHhcccCCeEEEEeccc
Q 029414           95 LKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                             ..-|+||+.-+.+           ...+.++.+.+.|++|.++|...+.
T Consensus        83 -------~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv  131 (446)
T 4a7p_A           83 -------KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTV  131 (446)
T ss_dssp             -------TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCC
T ss_pred             -------hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence                   3578898874322           2456677778899988877775443

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=91.79  E-value=0.46  Score=38.09  Aligned_cols=101  Identities=21%  Similarity=0.205  Sum_probs=60.0

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe---------cch--------
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---------SEA--------   87 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~---------~d~--------   87 (194)
                      ++.+|+-+|+|. |..+..++..+  +.+|+.+|.+++.++.+++    .|.    ++..         +..        
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~----lGa----~~~~l~~~~~~~~gya~~~~~~~~  252 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPEVAEQVRS----VGA----QWLDLGIDAAGEGGYARELSEAER  252 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGGGHHHHHH----TTC----EECCCC-------------CHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccchhhhhHHHH
Confidence            568999999984 55666666665  4689999999988877665    221    1111         000        


Q ss_pred             ---HHHHHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414           88 ---LSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        88 ---~~~~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                         .+.+.+.      -...|+|+....   .....-+-+...+.+|||++|+=-.+...|
T Consensus       253 ~~~~~~l~e~------l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG  307 (381)
T 3p2y_A          253 AQQQQALEDA------ITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGG  307 (381)
T ss_dssp             HHHHHHHHHH------HTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTC
T ss_pred             hhhHHHHHHH------HhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCC
Confidence               1122222      267999886431   111111236677889998887764444444

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.64  E-value=0.63  Score=37.21  Aligned_cols=42  Identities=24%  Similarity=0.229  Sum_probs=31.5

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHH
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLP   69 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~   69 (194)
                      ++++|+-+|+|. |..+..++..+  +.+|+.+|.++...+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            578999999974 45566666665  4589999999887776654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=91.43  E-value=4  Score=31.55  Aligned_cols=90  Identities=11%  Similarity=-0.035  Sum_probs=53.5

Q ss_pred             CeEEEEcccccHHHHHHHhhCCC-C-CEEEEEeCCcchHHhH---HHHHHHcCCCCcEEEEec-chHHHHHHHhhcCCCC
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPE-D-GQITAIDVNRETYEIG---LPIIKKAGVDHKINFIES-EALSVLDQLLKYSENE  101 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~-~-~~v~~iD~~~~~~~~a---~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~  101 (194)
                      .+|.-||+|  ..+..+|..+.. + .+|++.|.+++..+.+   .+.+...+.       .. +..+.          -
T Consensus        25 m~IgvIG~G--~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-------~~~s~~e~----------~   85 (317)
T 4ezb_A           25 TTIAFIGFG--EAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-------EPLDDVAG----------I   85 (317)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-------EEESSGGG----------G
T ss_pred             CeEEEECcc--HHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-------CCCCHHHH----------H
Confidence            578889875  444444443322 4 5899999998433322   233333332       22 22222          1


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..-|+|++..+.......++.+.+.+++|.+++-.
T Consensus        86 ~~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~  120 (317)
T 4ezb_A           86 ACADVVLSLVVGAATKAVAASAAPHLSDEAVFIDL  120 (317)
T ss_dssp             GGCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEEC
T ss_pred             hcCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEEC
Confidence            35799998776555566677888888887766543

>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}

Probab=91.29  E-value=1.5  Score=29.94  Aligned_cols=94  Identities=11%  Similarity=-0.028  Sum_probs=50.3

Q ss_pred             ccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEE-EecchHHHHHHHhhcCCCCCceeEEEEeCCc
Q 029414           35 VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF-IESEALSVLDQLLKYSENEGSFDYAFVDADK  113 (194)
Q Consensus        35 ~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~-~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~  113 (194)
                      .|.+..............+|..+|-++...+..++.+...+.  ...+ ...+..+.+..+.     ...+|+|++|...
T Consensus         9 ~~~~~~~~~~~~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~--~~~v~~~~~~~~al~~l~-----~~~~dlvilD~~l   81 (164)
T 3t8y_A            9 HHSSGLVPRGSHMTDRVIRVLVVDDSAFMRMVLKDIIDSQPD--MKVVGFAKDGLEAVEKAI-----ELKPDVITMDIEM   81 (164)
T ss_dssp             ---------------CCEEEEEECSCHHHHHHHHHHHHTSTT--EEEEEEESSHHHHHHHHH-----HHCCSEEEECSSC
T ss_pred             cccCCcccCccccccCccEEEEEcCCHHHHHHHHHHHhcCCC--eEEEEecCCHHHHHHHhc-----cCCCCEEEEeCCC
Confidence            445555555555544356899999999999999988886541  2222 3556666655543     2469999999763


Q ss_pred             --cccHHHHHHHHhcccCCeEEEEe
Q 029414          114 --DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       114 --~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                        .+...+++.+.+. .+--+|++.
T Consensus        82 ~~~~g~~l~~~lr~~-~~~~ii~~s  105 (164)
T 3t8y_A           82 PNLNGIEALKLIMKK-APTRVIMVS  105 (164)
T ss_dssp             SSSCHHHHHHHHHHH-SCCEEEEEE
T ss_pred             CCCCHHHHHHHHHhc-CCceEEEEe
Confidence              3345556655443 344455553

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.14  E-value=3  Score=30.96  Aligned_cols=105  Identities=21%  Similarity=0.273  Sum_probs=60.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-CCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE  101 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~~~  101 (194)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++...+.+   +  .++.++..|..+.  ...+.... ...
T Consensus         7 ~gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            7 QGKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            5688998887655 333333322 12679999999987776665554   2  3688888875432  11111000 012


Q ss_pred             CceeEEEEeCCc-----------ccc-----------HHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADK-----------DNY-----------CNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~-----------~~~-----------~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +.+|.++..+..           +++           ....+.+.+.++++|.|+.-
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i  137 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT  137 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            679988876531           011           12245556777778887763

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=91.04  E-value=3.9  Score=30.69  Aligned_cols=82  Identities=15%  Similarity=0.212  Sum_probs=55.1

Q ss_pred             cCCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-
Q 029414           25 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-   98 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-   98 (194)
                      .+++.+|--|.+.|.   .+..||+.   +.+|+.+|.+++.++.+.+.++..+  .++..+.+|..+.  ...+..+. 
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~---Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~   79 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALN---DSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTF   79 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence            367889999987764   44445553   7899999999999998888888776  3688888875331  11111100 


Q ss_pred             CCCCceeEEEEeC
Q 029414           99 ENEGSFDYAFVDA  111 (194)
Q Consensus        99 ~~~~~fD~i~id~  111 (194)
                      ...++.|.++-++
T Consensus        80 ~~~G~iDiLVNNA   92 (254)
T 4fn4_A           80 ETYSRIDVLCNNA   92 (254)
T ss_dssp             HHHSCCCEEEECC
T ss_pred             HHcCCCCEEEECC
Confidence            1137899888664

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=90.88  E-value=0.58  Score=34.77  Aligned_cols=87  Identities=17%  Similarity=0.137  Sum_probs=50.6

Q ss_pred             CeEEEEcccccHHHHHHHhhCCC-CC----EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPE-DG----QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~-~~----~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      .+|.-||+|  ..+..++..+.. +.    +|+.+|.+++..+..++.+   +    +.. ..+..+..          .
T Consensus         3 ~~i~iIG~G--~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~---g----~~~-~~~~~e~~----------~   62 (247)
T 3gt0_A            3 KQIGFIGCG--NMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY---G----LTT-TTDNNEVA----------K   62 (247)
T ss_dssp             CCEEEECCS--HHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH---C----CEE-CSCHHHHH----------H
T ss_pred             CeEEEECcc--HHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh---C----CEE-eCChHHHH----------H
Confidence            357788875  333333333211 22    7999999988777665443   3    222 22333332          2


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEE
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAV  134 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv  134 (194)
                      ..|+|++..........++.+.+.+++|.+++
T Consensus        63 ~aDvVilav~~~~~~~v~~~l~~~l~~~~~vv   94 (247)
T 3gt0_A           63 NADILILSIKPDLYASIINEIKEIIKNDAIIV   94 (247)
T ss_dssp             HCSEEEECSCTTTHHHHC---CCSSCTTCEEE
T ss_pred             hCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence            47999987766666677777777888877666

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=90.51  E-value=2.2  Score=27.00  Aligned_cols=79  Identities=14%  Similarity=0.022  Sum_probs=45.8

Q ss_pred             CCeEEEEcccccHHHHHHHhhCC-CC-CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCC
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIP-ED-GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG  102 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~-~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~  102 (194)
                      .++|+-+|+  |..+..++..+. .+ .+|+.+|.+++..+..+    .    ..+.+...|..+  .+...      ..
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~------~~   68 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKA------LG   68 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHH------TT
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHH------Hc
Confidence            357999998  555554443331 13 68999999887665443    1    245566666543  23333      25


Q ss_pred             ceeEEEEeCCccccHHHHH
Q 029414          103 SFDYAFVDADKDNYCNYHE  121 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~  121 (194)
                      .+|+|+...+........+
T Consensus        69 ~~d~vi~~~~~~~~~~~~~   87 (118)
T 3ic5_A           69 GFDAVISAAPFFLTPIIAK   87 (118)
T ss_dssp             TCSEEEECSCGGGHHHHHH
T ss_pred             CCCEEEECCCchhhHHHHH
Confidence            7899987765433333333

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=90.42  E-value=2.1  Score=33.83  Aligned_cols=96  Identities=6%  Similarity=-0.027  Sum_probs=58.7

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHH------HcCCCCcEEEEecchHHHHHHHhhcCC
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIK------KAGVDHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~------~~~~~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      ..+|.-||+|  .++..+|..+.. +..|+.++.+++..+..++.-.      ...+++++++. .|..+.   +     
T Consensus        29 ~mkI~VIGaG--~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~d~~ea---~-----   97 (356)
T 3k96_A           29 KHPIAILGAG--SWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-CDLKAS---L-----   97 (356)
T ss_dssp             CSCEEEECCS--HHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-SCHHHH---H-----
T ss_pred             CCeEEEECcc--HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-CCHHHH---H-----
Confidence            4579999985  444444333322 4579999999887776655311      11122334443 333232   1     


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                        ...|+|++..+.....+.++.+.+.++++.+++.
T Consensus        98 --~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs  131 (356)
T 3k96_A           98 --EGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAW  131 (356)
T ss_dssp             --TTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             --hcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence              4579999877666667778888888888876654

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=90.33  E-value=2.8  Score=31.27  Aligned_cols=79  Identities=15%  Similarity=0.170  Sum_probs=46.7

Q ss_pred             CCCeEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEe
Q 029414           26 NAKKTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~-~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      +.++|+-+|+|. |. .+..|+.. . -++++.+|.+.                   ...+.+++.+......-+++.+.
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~-G-v~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  107 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASA-G-VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  107 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHH-T-CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHc-C-CCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence            457899999973 33 22334443 2 36899999987                   56667777776644222455555


Q ss_pred             cchHH-HHHHHhhcCCCCCceeEEEEeCC
Q 029414           85 SEALS-VLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        85 ~d~~~-~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      .+..+ ....+.      ..+|+|+...+
T Consensus       108 ~~~~~~~~~~~~------~~~DvVi~~~d  130 (249)
T 1jw9_B          108 ALLDDAELAALI------AEHDLVLDCTD  130 (249)
T ss_dssp             SCCCHHHHHHHH------HTSSEEEECCS
T ss_pred             ccCCHhHHHHHH------hCCCEEEEeCC
Confidence            44322 223331      46998886554

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=90.17  E-value=0.16  Score=39.48  Aligned_cols=93  Identities=17%  Similarity=0.110  Sum_probs=58.6

Q ss_pred             eEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           29 KTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        29 ~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      +||-+|+  |.|..+..+|+..  +.++++++.+++..+.+++    .+.. .  ++.  ..+........ ...+.+|+
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa~-~--v~~--~~~~~~~~~~~-~~~~~~d~  220 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQ----LGAS-E--VIS--REDVYDGTLKA-LSKQQWQG  220 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHH----HTCS-E--EEE--HHHHCSSCCCS-SCCCCEEE
T ss_pred             eEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc-E--EEE--CCCchHHHHHH-hhcCCccE
Confidence            8999996  5677888888775  4689999999888887765    3432 1  221  11110000000 01246998


Q ss_pred             EEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          107 AFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       107 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ++-....    ..++.+++.++++|.++.-.
T Consensus       221 vid~~g~----~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          221 AVDPVGG----KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             EEESCCT----HHHHHHHTTEEEEEEEEECC
T ss_pred             EEECCcH----HHHHHHHHhhcCCCEEEEEe
Confidence            7644322    35788899999999998754

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=90.05  E-value=5  Score=30.43  Aligned_cols=81  Identities=16%  Similarity=0.201  Sum_probs=48.3

Q ss_pred             CCCeEEEEccc----ccH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC
Q 029414           26 NAKKTIEIGVF----TGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS   98 (194)
Q Consensus        26 ~~~~vLeiG~G----~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~   98 (194)
                      +++++|-.|++    .|. .+..|++.   +.+|+.++.+++..+.+++.....+   .+.++.+|..+.  ...+..+.
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~---G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~  102 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQ---GAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVL  102 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHC---CCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHH
Confidence            45789999974    343 44445543   6799999999876666666555544   456777775331  12211100


Q ss_pred             -CCCCceeEEEEeCC
Q 029414           99 -ENEGSFDYAFVDAD  112 (194)
Q Consensus        99 -~~~~~fD~i~id~~  112 (194)
                       ...+.+|.++..+.
T Consensus       103 ~~~~g~iD~lVnnAG  117 (296)
T 3k31_A          103 AEEWGSLDFVVHAVA  117 (296)
T ss_dssp             HHHHSCCSEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence             01257899887654

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=89.82  E-value=0.75  Score=36.92  Aligned_cols=45  Identities=13%  Similarity=0.147  Sum_probs=33.9

Q ss_pred             CeEEEEcccccHHHHHHHhhCC------CCCEEEEEeCCcchHHhHHHHHH
Q 029414           28 KKTIEIGVFTGYSLLLTALTIP------EDGQITAIDVNRETYEIGLPIIK   72 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~------~~~~v~~iD~~~~~~~~a~~~~~   72 (194)
                      -.|+|+|+|.|..+..+++.+.      ...+++.+|.|+...+.=++.+.
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence            3799999999999888765532      13589999999977765555543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=89.81  E-value=0.72  Score=36.48  Aligned_cols=70  Identities=17%  Similarity=0.135  Sum_probs=43.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH--HHHHHHhhcCCCCCc
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL--SVLDQLLKYSENEGS  103 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~~~~~~~~  103 (194)
                      +..+|+-+||  |..+..+++.+.....|+..|.+.+.++.+++         .+..+..|+.  +.+..+.      .+
T Consensus        15 ~~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~d~~d~~~l~~~~------~~   77 (365)
T 3abi_A           15 RHMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE---------FATPLKVDASNFDKLVEVM------KE   77 (365)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT---------TSEEEECCTTCHHHHHHHH------TT
T ss_pred             CccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc---------cCCcEEEecCCHHHHHHHH------hC
Confidence            3468999998  66666666666556789999998877665432         2334444443  2333332      56


Q ss_pred             eeEEEEeCC
Q 029414          104 FDYAFVDAD  112 (194)
Q Consensus       104 fD~i~id~~  112 (194)
                      .|+|+.-.+
T Consensus        78 ~DvVi~~~p   86 (365)
T 3abi_A           78 FELVIGALP   86 (365)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEEecC
Confidence            898876544

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=89.74  E-value=5.3  Score=30.26  Aligned_cols=82  Identities=10%  Similarity=0.140  Sum_probs=48.5

Q ss_pred             cCCCeEEEEccc----ccH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhc
Q 029414           25 VNAKKTIEIGVF----TGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY   97 (194)
Q Consensus        25 ~~~~~vLeiG~G----~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~   97 (194)
                      .+++++|-.|++    .|. .+..|++.   +.+|+.++.++...+.+++.....+   ++.++.+|..+.  ...+..+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~---G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~  102 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREA---GAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFET  102 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHT---TCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHC---CCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHH
Confidence            357889999965    333 34445553   6789999988665555555544443   577888875431  2221110


Q ss_pred             C-CCCCceeEEEEeCC
Q 029414           98 S-ENEGSFDYAFVDAD  112 (194)
Q Consensus        98 ~-~~~~~fD~i~id~~  112 (194)
                      . ...+.+|+++..+.
T Consensus       103 ~~~~~g~iD~lVnnAG  118 (293)
T 3grk_A          103 LEKKWGKLDFLVHAIG  118 (293)
T ss_dssp             HHHHTSCCSEEEECCC
T ss_pred             HHHhcCCCCEEEECCc
Confidence            0 01367999987654

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=89.73  E-value=0.9  Score=34.56  Aligned_cols=89  Identities=8%  Similarity=-0.029  Sum_probs=53.6

Q ss_pred             CeEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           28 KKTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        28 ~~vLeiG~G~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      .+|.=||+|. |. .+..++....+..+|+.+|.+++..+.+++.+   +    +... .+..+.   .       ...|
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~---g----i~~~-~~~~~~---~-------~~aD   65 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC---G----VHTT-QDNRQG---A-------LNAD   65 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT---C----CEEE-SCHHHH---H-------SSCS
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc---C----CEEe-CChHHH---H-------hcCC
Confidence            5688899863 22 22333332111237999999998776665432   3    3332 233222   2       4579


Q ss_pred             EEEEeCCccccHHHHHHHHhc-ccCCeEEE
Q 029414          106 YAFVDADKDNYCNYHERLMKL-LKVGGIAV  134 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~-L~~gG~lv  134 (194)
                      +|++..........++.+.+. ++++.+++
T Consensus        66 vVilav~p~~~~~vl~~l~~~~l~~~~iii   95 (280)
T 3tri_A           66 VVVLAVKPHQIKMVCEELKDILSETKILVI   95 (280)
T ss_dssp             EEEECSCGGGHHHHHHHHHHHHHTTTCEEE
T ss_pred             eEEEEeCHHHHHHHHHHHHhhccCCCeEEE
Confidence            999977666677888888777 77665555

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=89.57  E-value=0.92  Score=36.55  Aligned_cols=41  Identities=22%  Similarity=0.204  Sum_probs=31.1

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHH
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGL   68 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~   68 (194)
                      ++.+|+-+|+|. |..+..++..+  +.+|+.+|.+++..+.++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~v~D~~~~~~~~~~  212 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQ  212 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCGGGHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHH
Confidence            478999999974 55566667665  468999999998777653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.55  E-value=1.2  Score=36.04  Aligned_cols=94  Identities=11%  Similarity=0.021  Sum_probs=61.4

Q ss_pred             CCeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCc
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS  103 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~  103 (194)
                      ..+|+-+|+  |..+..+++.+. .+..|+.+|.+++.++.+++    .    .+.++.||+.+  .+...     ....
T Consensus         4 ~~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~----g~~vi~GDat~~~~L~~a-----gi~~   68 (413)
T 3l9w_A            4 GMRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----F----GMKVFYGDATRMDLLESA-----GAAK   68 (413)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----T----TCCCEESCTTCHHHHHHT-----TTTT
T ss_pred             CCeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----C----CCeEEEcCCCCHHHHHhc-----CCCc
Confidence            356888887  555555544432 25689999999998887663    2    35678888765  34432     1357


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      .|+|++..........+-...+.+.|+..|++
T Consensus        69 A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           69 AEVLINAIDDPQTNLQLTEMVKEHFPHLQIIA  100 (413)
T ss_dssp             CSEEEECCSSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             cCEEEECCCChHHHHHHHHHHHHhCCCCeEEE
Confidence            89998876544444445555677888877776

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=89.40  E-value=2.5  Score=32.52  Aligned_cols=60  Identities=10%  Similarity=0.082  Sum_probs=39.1

Q ss_pred             CCCeEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCc------------------chHHhHHHHHHHcCCCCcEEEEec
Q 029414           26 NAKKTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~-~~~~la~~~~~~~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +..+|+-+|+|. |. .+..|+.. . -++++.+|.+.                  ...+.+++++.+.+..-+++.+..
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~a-G-VG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~  112 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRC-G-IGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY  112 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHH-T-CSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHc-C-CCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence            457999999984 44 34445554 2 57999999876                  456677777776653334555554


Q ss_pred             ch
Q 029414           86 EA   87 (194)
Q Consensus        86 d~   87 (194)
                      +.
T Consensus       113 ~l  114 (292)
T 3h8v_A          113 NI  114 (292)
T ss_dssp             CT
T ss_pred             cC
Confidence            43

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=89.27  E-value=5.5  Score=29.76  Aligned_cols=106  Identities=17%  Similarity=0.168  Sum_probs=60.8

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCC------------cchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVN------------RETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      +++++|-.|++.|.   .+..|++.   +.+|+.+|.+            .+.++.+.+.+...+  .++.++..|..+.
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~---G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~   83 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEE---GADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDR   83 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC---CCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCH
Confidence            56788988876553   33334443   6799999987            445555555555544  4788888875431


Q ss_pred             --HHHHhhcC-CCCCceeEEEEeCCc---------ccc-----------HHHHHHHHhcccCCeEEEEe
Q 029414           91 --LDQLLKYS-ENEGSFDYAFVDADK---------DNY-----------CNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        91 --~~~~~~~~-~~~~~fD~i~id~~~---------~~~-----------~~~~~~~~~~L~~gG~lv~~  136 (194)
                        ...+..+. ...+.+|.++..+..         +.+           ....+.+.+.++.+|.|+.-
T Consensus        84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  152 (287)
T 3pxx_A           84 AAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT  152 (287)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence              11111100 012579988876541         111           12235566777778887763

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=89.22  E-value=1.2  Score=36.04  Aligned_cols=42  Identities=24%  Similarity=0.227  Sum_probs=33.3

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHH
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLP   69 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~   69 (194)
                      ++.+|+-+|+|. |..+..++..+  +.+|+.+|.++..++.+++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~  231 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPAAKEQVAS  231 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTTHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence            578999999984 66666777765  4699999999988777665

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=89.10  E-value=0.78  Score=45.49  Aligned_cols=103  Identities=11%  Similarity=-0.010  Sum_probs=65.1

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++.+||-.|.  |.|..++.+|+..  +.+|++++.+++..+.+++.+...+.. .  ++.....++...+... ...
T Consensus      1665 l~~Ge~VLI~gaaGgVG~aAiqlAk~~--Ga~Viat~~s~~k~~~l~~~~~~lga~-~--v~~~~~~~~~~~i~~~-t~g 1738 (2512)
T 2vz8_A         1665 MQPGESVLIHSGSGGVGQAAIAIALSR--GCRVFTTVGSAEKRAYLQARFPQLDET-C--FANSRDTSFEQHVLRH-TAG 1738 (2512)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTCCST-T--EEESSSSHHHHHHHHT-TTS
T ss_pred             CCCCCEEEEEeCChHHHHHHHHHHHHc--CCEEEEEeCChhhhHHHHhhcCCCCce-E--EecCCCHHHHHHHHHh-cCC
Confidence            456789999874  6677888889875  579999999888777776654323322 2  2222112222222111 112


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+|+|+- ...   ...++.+++.|+++|.++.-
T Consensus      1739 ~GvDvVld-~~g---~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A         1739 KGVDLVLN-SLA---EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp             CCEEEEEE-CCC---HHHHHHHHTTEEEEEEEEEC
T ss_pred             CCceEEEE-CCC---chHHHHHHHhcCCCcEEEEe
Confidence            46998774 322   45688899999999998863

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=88.92  E-value=6.9  Score=32.18  Aligned_cols=97  Identities=12%  Similarity=0.084  Sum_probs=56.3

Q ss_pred             CCCeEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc---CC---------CCcEEEEecchHHHH
Q 029414           26 NAKKTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GV---------DHKINFIESEALSVL   91 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~---------~~~v~~~~~d~~~~~   91 (194)
                      ...+|.-||+|. |. .+..|++.   +.+|+++|.+++.++..++.....   ++         ..++++. .|..+.+
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~---G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~t-td~~~a~   82 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADI---GHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFS-TDIEAAV   82 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-CCHHHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhC---CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEE-CCHHHHh
Confidence            446889998863 22 33334442   468999999998877665431000   00         1123332 2332222


Q ss_pred             HHHhhcCCCCCceeEEEEeCCc----------cccHHHHHHHHhcccCCeEEEEe
Q 029414           92 DQLLKYSENEGSFDYAFVDADK----------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~~----------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                                ...|+||+..+.          ....+.++.+.+.+++|.+++..
T Consensus        83 ----------~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~  127 (478)
T 2y0c_A           83 ----------AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDK  127 (478)
T ss_dssp             ----------HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             ----------hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence                      247899987543          44566677777889987776554

>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}

Probab=88.84  E-value=3.7  Score=27.21  Aligned_cols=79  Identities=9%  Similarity=-0.007  Sum_probs=51.6

Q ss_pred             CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhccc
Q 029414           51 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLK  128 (194)
Q Consensus        51 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~  128 (194)
                      ..+|..+|-++...+..++.+...+.. .+-....+..+.+..+.     ...+|+|++|...  .+...+++.+.+. .
T Consensus        15 ~~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~-~   87 (152)
T 3eul_A           15 KVRVVVGDDHPLFREGVVRALSLSGSV-NVVGEADDGAAALELIK-----AHLPDVALLDYRMPGMDGAQVAAAVRSY-E   87 (152)
T ss_dssp             CEEEEEECSSHHHHHHHHHHHHHHSSE-EEEEEESSHHHHHHHHH-----HHCCSEEEEETTCSSSCHHHHHHHHHHT-T
T ss_pred             eEEEEEEcCCHHHHHHHHHHHhhCCCe-EEEEEeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHhc-C
Confidence            568999999999999999999877621 22224556666555543     2469999999763  3445666666544 4


Q ss_pred             CCe-EEEEe
Q 029414          129 VGG-IAVYD  136 (194)
Q Consensus       129 ~gG-~lv~~  136 (194)
                      |+. +|++.
T Consensus        88 ~~~~ii~~s   96 (152)
T 3eul_A           88 LPTRVLLIS   96 (152)
T ss_dssp             CSCEEEEEE
T ss_pred             CCCeEEEEE
Confidence            443 44443

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=88.82  E-value=3.8  Score=31.58  Aligned_cols=83  Identities=11%  Similarity=0.155  Sum_probs=53.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH------HHHHhhcC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS   98 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~   98 (194)
                      .+++||-.|++.| .+..+++.+ ..+.+|+.++.+++..+.+.+.+...+...++.++..|..+.      ....... 
T Consensus         7 ~~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-   84 (319)
T 3ioy_A            7 AGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR-   84 (319)
T ss_dssp             TTCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh-
Confidence            4678898887655 333333332 136799999999998888887777665444788888886431      2222111 


Q ss_pred             CCCCceeEEEEeCC
Q 029414           99 ENEGSFDYAFVDAD  112 (194)
Q Consensus        99 ~~~~~fD~i~id~~  112 (194)
                        .+.+|+++..+.
T Consensus        85 --~g~id~lv~nAg   96 (319)
T 3ioy_A           85 --FGPVSILCNNAG   96 (319)
T ss_dssp             --TCCEEEEEECCC
T ss_pred             --CCCCCEEEECCC
Confidence              367999987754

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=88.68  E-value=6  Score=29.64  Aligned_cols=79  Identities=11%  Similarity=0.100  Sum_probs=54.3

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHhh
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK   96 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~   96 (194)
                      +++.+|--|.+.|.   .+..|++.   +.+|+..|.+++.++.+.+.+...+  .++..+.+|..+      .......
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~---Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAA---GARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDA   82 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT---TCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            67888888877663   34445553   6799999999998888888887765  367788877533      2222222


Q ss_pred             cCCCCCceeEEEEeCC
Q 029414           97 YSENEGSFDYAFVDAD  112 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~  112 (194)
                         +.++.|.++.++.
T Consensus        83 ---~~G~iDiLVNNAG   95 (255)
T 4g81_D           83 ---EGIHVDILINNAG   95 (255)
T ss_dssp             ---TTCCCCEEEECCC
T ss_pred             ---HCCCCcEEEECCC
Confidence               2578998887643

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=88.62  E-value=3.3  Score=33.18  Aligned_cols=89  Identities=9%  Similarity=0.082  Sum_probs=54.0

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC--------------CCcEEEEecchHHHHHHH
Q 029414           29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSVLDQL   94 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~~~~   94 (194)
                      +|.-||+  |+.+..+|..+..+.+|+++|.+++.++..++.    +.              ..++++. .+..+..   
T Consensus         2 kI~VIG~--G~vG~~~A~~La~G~~V~~~d~~~~~~~~l~~~----~~~i~e~~l~~~~~~~~~~l~~t-~~~~~~~---   71 (402)
T 1dlj_A            2 KIAVAGS--GYVGLSLGVLLSLQNEVTIVDILPSKVDKINNG----LSPIQDEYIEYYLKSKQLSIKAT-LDSKAAY---   71 (402)
T ss_dssp             EEEEECC--SHHHHHHHHHHTTTSEEEEECSCHHHHHHHHTT----CCSSCCHHHHHHHHHSCCCEEEE-SCHHHHH---
T ss_pred             EEEEECC--CHHHHHHHHHHhCCCEEEEEECCHHHHHHHHcC----CCCcCCCCHHHHHHhccCcEEEe-CCHHHHh---
Confidence            4667776  666666666554456899999998776654321    11              1122222 2322222   


Q ss_pred             hhcCCCCCceeEEEEeCCcc-----------ccHHHHHHHHhcccCCeEEEE
Q 029414           95 LKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~  135 (194)
                             ...|+|++.....           ...+.++.+.+ +++|.+++.
T Consensus        72 -------~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~  115 (402)
T 1dlj_A           72 -------KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLII  115 (402)
T ss_dssp             -------HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEE
T ss_pred             -------cCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEE
Confidence                   2478998875533           25666777778 888887776

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=88.41  E-value=0.79  Score=36.44  Aligned_cols=76  Identities=16%  Similarity=0.084  Sum_probs=45.6

Q ss_pred             cCCCeEEEEccc---ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           25 VNAKKTIEIGVF---TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        25 ~~~~~vLeiG~G---~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      .++.+||-+|+|   .|..++.+|+..  +.+|++++.+++..+.+++    .+...-+.....+..+.+.+...    .
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~v~~~t~----~  238 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKD--GIKLVNIVRKQEQADLLKA----QGAVHVCNAASPTFMQDLTEALV----S  238 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHH----TTCSCEEETTSTTHHHHHHHHHH----H
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHh----CCCcEEEeCCChHHHHHHHHHhc----C
Confidence            567889998543   456667777764  4689999999988877764    45432222222333333333211    1


Q ss_pred             CceeEEEEe
Q 029414          102 GSFDYAFVD  110 (194)
Q Consensus       102 ~~fD~i~id  110 (194)
                      ..+|++|-.
T Consensus       239 ~g~d~v~d~  247 (379)
T 3iup_A          239 TGATIAFDA  247 (379)
T ss_dssp             HCCCEEEES
T ss_pred             CCceEEEEC
Confidence            369977643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=88.15  E-value=2.4  Score=28.83  Aligned_cols=97  Identities=12%  Similarity=0.033  Sum_probs=54.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE  101 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~  101 (194)
                      ....+|+-+|+  |..+..++..+. .+.+|+.+|.+++..+.+++   ..    ...++.+|..+  .+...     ..
T Consensus        17 ~~~~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~~----g~~~~~~d~~~~~~l~~~-----~~   82 (155)
T 2g1u_A           17 QKSKYIVIFGC--GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---EF----SGFTVVGDAAEFETLKEC-----GM   82 (155)
T ss_dssp             CCCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---TC----CSEEEESCTTSHHHHHTT-----TG
T ss_pred             cCCCcEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---cC----CCcEEEecCCCHHHHHHc-----Cc
Confidence            35678999997  455444444331 25689999999877665431   11    23455566433  22221     02


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ..+|+|++.............+.+.+.+...++.
T Consensus        83 ~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~  116 (155)
T 2g1u_A           83 EKADMVFAFTNDDSTNFFISMNARYMFNVENVIA  116 (155)
T ss_dssp             GGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             ccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEE
Confidence            4689998866543333333444455555556665

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=88.14  E-value=2.4  Score=34.70  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=26.5

Q ss_pred             CeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHH
Q 029414           28 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGL   68 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~   68 (194)
                      .+|--||+  |+.++.+|..+. .+.+|+++|++++.++..+
T Consensus        22 ~~IaViGl--GYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln   61 (444)
T 3vtf_A           22 ASLSVLGL--GYVGVVHAVGFALLGHRVVGYDVNPSIVERLR   61 (444)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEEcc--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence            47888887  555554443332 2569999999998776654

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=88.08  E-value=0.89  Score=35.72  Aligned_cols=101  Identities=13%  Similarity=0.106  Sum_probs=53.4

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEE-EEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH-HHHHhhcCC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSE   99 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~-~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~   99 (194)
                      ..++++||-+|+  +.|..++.+|+..  +.+++ .++.++... .-++.++..|..   .++.  ..+. ...+.....
T Consensus       165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~-~~~~~~~~lGa~---~vi~--~~~~~~~~~~~~~~  236 (357)
T 1zsy_A          165 LQPGDSVIQNASNSGVGQAVIQIAAAL--GLRTINVVRDRPDIQ-KLSDRLKSLGAE---HVIT--EEELRRPEMKNFFK  236 (357)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEECCCSCHH-HHHHHHHHTTCS---EEEE--HHHHHSGGGGGTTS
T ss_pred             cCCCCEEEEeCCcCHHHHHHHHHHHHc--CCEEEEEecCccchH-HHHHHHHhcCCc---EEEe--cCcchHHHHHHHHh
Confidence            446789999996  5678888888875  45554 455544321 112233445643   2222  1111 011111001


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+.+|+||-....    .....+++.|+++|.++.-
T Consensus       237 ~~~~~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~  269 (357)
T 1zsy_A          237 DMPQPRLALNCVGG----KSSTELLRQLARGGTMVTY  269 (357)
T ss_dssp             SSCCCSEEEESSCH----HHHHHHHTTSCTTCEEEEC
T ss_pred             CCCCceEEEECCCc----HHHHHHHHhhCCCCEEEEE
Confidence            11258977643221    1224578999999999885

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=87.99  E-value=4.8  Score=29.61  Aligned_cols=84  Identities=11%  Similarity=0.097  Sum_probs=50.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-CC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-EN  100 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~~  100 (194)
                      +.++||-.|+ +|..+..+++.+.  .+.+|+.++.+++..+...+.+...+  .++.++.+|..+.  +..+..+. ..
T Consensus         3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTGG-NKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESSC-SSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            4567777764 5666666555442  25789999998877777666666544  3678888875431  22211100 00


Q ss_pred             CCceeEEEEeCC
Q 029414          101 EGSFDYAFVDAD  112 (194)
Q Consensus       101 ~~~fD~i~id~~  112 (194)
                      .+.+|.++..+.
T Consensus        80 ~g~id~li~~Ag   91 (276)
T 1wma_A           80 YGGLDVLVNNAG   91 (276)
T ss_dssp             HSSEEEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            247999886653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=87.73  E-value=5.9  Score=32.32  Aligned_cols=98  Identities=15%  Similarity=0.135  Sum_probs=57.0

Q ss_pred             CeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCC------------CCcEEEEecchHHHHHHH
Q 029414           28 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGV------------DHKINFIESEALSVLDQL   94 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~------------~~~v~~~~~d~~~~~~~~   94 (194)
                      .+|.-||+  |+.+..+|..+. .+.+|+++|.+++.++..++.......            ..++++. .|..+.   +
T Consensus         3 mkI~VIG~--G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~ea---~   76 (450)
T 3gg2_A            3 LDIAVVGI--GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQA---V   76 (450)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHHH---G
T ss_pred             CEEEEECc--CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHHH---H
Confidence            46778887  555555444432 146899999999887766542100000            1133332 233222   1


Q ss_pred             hhcCCCCCceeEEEEeCCcc----------ccHHHHHHHHhcccCCeEEEEecc
Q 029414           95 LKYSENEGSFDYAFVDADKD----------NYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~~----------~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                             ...|+|++..+.+          ...+.++.+.+.+++|.+++....
T Consensus        77 -------~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST  123 (450)
T 3gg2_A           77 -------PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST  123 (450)
T ss_dssp             -------GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             -------hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee
Confidence                   3579999876533          456667778888888777766443

>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}

Probab=87.71  E-value=3.9  Score=26.15  Aligned_cols=77  Identities=13%  Similarity=0.037  Sum_probs=50.9

Q ss_pred             CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhccc
Q 029414           51 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLK  128 (194)
Q Consensus        51 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~  128 (194)
                      +.+|..+|-++......++.+...+.  .+. ...+..+.+..+.     ...+|+|++|...  .+...+++.+.+.-+
T Consensus         7 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~   78 (130)
T 3eod_A            7 GKQILIVEDEQVFRSLLDSWFSSLGA--TTV-LAADGVDALELLG-----GFTPDLMICDIAMPRMNGLKLLEHIRNRGD   78 (130)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHT-----TCCCSEEEECCC-----CHHHHHHHHHTTC
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhCCc--eEE-EeCCHHHHHHHHh-----cCCCCEEEEecCCCCCCHHHHHHHHHhcCC
Confidence            56899999999999999999988774  333 3556666666552     4679999999752  344566666655432


Q ss_pred             CCeEEEE
Q 029414          129 VGGIAVY  135 (194)
Q Consensus       129 ~gG~lv~  135 (194)
                      .--++++
T Consensus        79 ~~~ii~~   85 (130)
T 3eod_A           79 QTPVLVI   85 (130)
T ss_dssp             CCCEEEE
T ss_pred             CCCEEEE
Confidence            2234444

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=87.56  E-value=2.1  Score=32.17  Aligned_cols=89  Identities=16%  Similarity=0.178  Sum_probs=51.8

Q ss_pred             CeEEEEcccccHHHHHHHhhCCC-CC--EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC-c
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPE-DG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-S  103 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~-~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~-~  103 (194)
                      ++|.-||+|  ..+..++..+.. +.  +|+++|.+++..+.++    ..+...  .. ..+..+.          .. .
T Consensus         2 ~~I~iIG~G--~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~----~~g~~~--~~-~~~~~~~----------~~~~   62 (281)
T 2g5c_A            2 QNVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID--EG-TTSIAKV----------EDFS   62 (281)
T ss_dssp             CEEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS--EE-ESCGGGG----------GGTC
T ss_pred             cEEEEEecC--HHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH----HCCCcc--cc-cCCHHHH----------hcCC
Confidence            367788875  333333332211 23  7999999987766544    234321  11 1222221          14 6


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      .|+|++..+.......++.+.+.++++.+++.
T Consensus        63 aDvVilavp~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           63 PDFVMLSSPVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCEEEEcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence            89999877655566677777778888775554

>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}

Probab=87.39  E-value=4.2  Score=26.13  Aligned_cols=75  Identities=20%  Similarity=0.110  Sum_probs=48.3

Q ss_pred             EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhcccCC
Q 029414           53 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVG  130 (194)
Q Consensus        53 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~~g  130 (194)
                      ++..+|-++...+..++.+...+.  .+.....+..+.+..+.     ...+|+|++|...  .+...+++.+.+. .|+
T Consensus         3 ~ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~-~~~   74 (134)
T 3f6c_A            3 NAIIIDDHPLAIAAIRNLLIKNDI--EILAELTEGGSAVQRVE-----TLKPDIVIIDVDIPGVNGIQVLETLRKR-QYS   74 (134)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHTTE--EEEEEESSSTTHHHHHH-----HHCCSEEEEETTCSSSCHHHHHHHHHHT-TCC
T ss_pred             EEEEEcCCHHHHHHHHHHHhhCCc--EEEEEcCCHHHHHHHHH-----hcCCCEEEEecCCCCCChHHHHHHHHhc-CCC
Confidence            688899999999999999987763  33324455555544442     2469999999763  3445666666544 444


Q ss_pred             e-EEEE
Q 029414          131 G-IAVY  135 (194)
Q Consensus       131 G-~lv~  135 (194)
                      . ++++
T Consensus        75 ~~ii~~   80 (134)
T 3f6c_A           75 GIIIIV   80 (134)
T ss_dssp             SEEEEE
T ss_pred             CeEEEE
Confidence            4 4444

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=87.28  E-value=1.8  Score=35.57  Aligned_cols=90  Identities=17%  Similarity=0.082  Sum_probs=57.2

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCc
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS  103 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~  103 (194)
                      ..+|+=+|+  |..+..+|+.+.. +..|+.+|.+++.++.+.+.+       .+..+.||+.+  .+.+.     .-+.
T Consensus         3 ~M~iiI~G~--G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~A-----gi~~   68 (461)
T 4g65_A            3 AMKIIILGA--GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEA-----GAQD   68 (461)
T ss_dssp             CEEEEEECC--SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHH-----TTTT
T ss_pred             cCEEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhc-----CCCc
Confidence            356777776  7788888887743 457999999999888776654       46788899865  44443     2357


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCC
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVG  130 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~g  130 (194)
                      .|++++--......-....+.+.+.+.
T Consensus        69 ad~~ia~t~~De~Nl~~~~~Ak~~~~~   95 (461)
T 4g65_A           69 ADMLVAVTNTDETNMAACQVAFTLFNT   95 (461)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEEcCChHHHHHHHHHHHHhcCC
Confidence            898876433222222233344555333

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=87.06  E-value=0.91  Score=39.96  Aligned_cols=97  Identities=9%  Similarity=0.059  Sum_probs=58.3

Q ss_pred             HcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ..++++||-.|+  |.|..++.+|+..  +.+|++++.++ ..+..+     .+...-+.....+..+.+....    ..
T Consensus       343 l~~G~~VLI~gaaGgvG~~aiqlAk~~--Ga~V~~t~~~~-k~~~l~-----lga~~v~~~~~~~~~~~i~~~t----~g  410 (795)
T 3slk_A          343 LRPGESLLVHSAAGGVGMAAIQLARHL--GAEVYATASED-KWQAVE-----LSREHLASSRTCDFEQQFLGAT----GG  410 (795)
T ss_dssp             CCTTCCEEEESTTBHHHHHHHHHHHHT--TCCEEEECCGG-GGGGSC-----SCGGGEECSSSSTHHHHHHHHS----CS
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHc--CCEEEEEeChH-Hhhhhh-----cChhheeecCChhHHHHHHHHc----CC
Confidence            346789999994  6788899999986  46898888654 222221     2321111111223333333321    13


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+|+|+-....    ..++.+++.|+++|.++.-
T Consensus       411 ~GvDvVld~~gg----~~~~~~l~~l~~~Gr~v~i  441 (795)
T 3slk_A          411 RGVDVVLNSLAG----EFADASLRMLPRGGRFLEL  441 (795)
T ss_dssp             SCCSEEEECCCT----TTTHHHHTSCTTCEEEEEC
T ss_pred             CCeEEEEECCCc----HHHHHHHHHhcCCCEEEEe
Confidence            579987754322    3457788999999999984

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=86.99  E-value=3  Score=32.42  Aligned_cols=97  Identities=9%  Similarity=0.064  Sum_probs=56.4

Q ss_pred             CeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHH----cCCCCcEE--EEecchHHHHHHHhhcCCC
Q 029414           28 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKK----AGVDHKIN--FIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~----~~~~~~v~--~~~~d~~~~~~~~~~~~~~  100 (194)
                      .+|.-||+|.  .+..+|..+. .+..|+.+|.+++..+..++....    .+.+....  ....+..+.   +      
T Consensus         5 mki~iiG~G~--~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------   73 (359)
T 1bg6_A            5 KTYAVLGLGN--GGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---V------   73 (359)
T ss_dssp             CEEEEECCSH--HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---H------
T ss_pred             CeEEEECCCH--HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH---H------
Confidence            5799999864  3333332221 146899999998877665543200    00000000  112232221   2      


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                       ..+|+|++........+.++.+.+.++++.+++..
T Consensus        74 -~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           74 -KDADVILIVVPAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             -TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             -hcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc
Confidence             46899999877666677888888889988776654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=86.69  E-value=3.3  Score=30.89  Aligned_cols=83  Identities=11%  Similarity=0.063  Sum_probs=52.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG  102 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~  102 (194)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.++.+++..+...+.+........+..+..|..+  ....+..+   .+
T Consensus         9 ~~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~g   84 (267)
T 3t4x_A            9 KGKTALVTGSTAG-IGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK---YP   84 (267)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH---CC
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh---cC
Confidence            4678888886544 333333322 12679999999988887777777665433467778877643  22333222   36


Q ss_pred             ceeEEEEeCC
Q 029414          103 SFDYAFVDAD  112 (194)
Q Consensus       103 ~fD~i~id~~  112 (194)
                      +.|.++..+.
T Consensus        85 ~id~lv~nAg   94 (267)
T 3t4x_A           85 KVDILINNLG   94 (267)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999887653

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=86.67  E-value=2.4  Score=35.21  Aligned_cols=87  Identities=11%  Similarity=0.108  Sum_probs=53.3

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..+++|+-+|+|. |......++..  +.+|+++|.++...+.+++    .+.    ++  .+..+.   +       ..
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e~---l-------~~  329 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMM----EGF----DV--VTVEEA---I-------GD  329 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTC----EE--CCHHHH---G-------GG
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC----EE--ecHHHH---H-------hC
Confidence            4678999999863 44444555553  4699999999877665543    242    22  232221   1       45


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      .|+|+.........  -+...+.+++||+++-
T Consensus       330 aDvVi~atgt~~~i--~~~~l~~mk~ggilvn  359 (494)
T 3ce6_A          330 ADIVVTATGNKDII--MLEHIKAMKDHAILGN  359 (494)
T ss_dssp             CSEEEECSSSSCSB--CHHHHHHSCTTCEEEE
T ss_pred             CCEEEECCCCHHHH--HHHHHHhcCCCcEEEE
Confidence            89888764322211  1245677899998876

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=86.67  E-value=2.7  Score=32.02  Aligned_cols=34  Identities=9%  Similarity=0.099  Sum_probs=26.4

Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ..+|+|++........+.++.+.+.++++..++.
T Consensus        82 ~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~  115 (317)
T 2qyt_A           82 GTVDYILFCTKDYDMERGVAEIRPMIGQNTKILP  115 (317)
T ss_dssp             CCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEE
Confidence            5799999987666667788888888888776655

>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}

Probab=86.64  E-value=5.4  Score=26.66  Aligned_cols=79  Identities=9%  Similarity=-0.007  Sum_probs=51.1

Q ss_pred             CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhcccC
Q 029414           52 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKV  129 (194)
Q Consensus        52 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~~  129 (194)
                      .+|..+|-++...+..++.+...+.  .+.....+..+.+..+...   ...+|+|++|...  .+...+++.+.+.- +
T Consensus        37 ~~Ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~l~~~---~~~~dliilD~~l~~~~g~~~~~~lr~~~-~  110 (157)
T 3hzh_A           37 FNVLIVDDSVFTVKQLTQIFTSEGF--NIIDTAADGEEAVIKYKNH---YPNIDIVTLXITMPKMDGITCLSNIMEFD-K  110 (157)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHH---GGGCCEEEECSSCSSSCHHHHHHHHHHHC-T
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHhc---CCCCCEEEEeccCCCccHHHHHHHHHhhC-C
Confidence            3899999999999999999988764  3432556666665554321   1279999999763  34455666665433 4


Q ss_pred             C-eEEEEe
Q 029414          130 G-GIAVYD  136 (194)
Q Consensus       130 g-G~lv~~  136 (194)
                      + -+|++.
T Consensus       111 ~~~ii~ls  118 (157)
T 3hzh_A          111 NARVIMIS  118 (157)
T ss_dssp             TCCEEEEE
T ss_pred             CCcEEEEe
Confidence            4 344443

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=86.51  E-value=8  Score=28.49  Aligned_cols=82  Identities=11%  Similarity=0.038  Sum_probs=47.7

Q ss_pred             cCCCeEEEEccc-ccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHhh
Q 029414           25 VNAKKTIEIGVF-TGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK   96 (194)
Q Consensus        25 ~~~~~vLeiG~G-~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~   96 (194)
                      .+.++||-.|++ +|..+..+++.+ ..+.+|+.++.+....+.+++.....+   ++.++.+|..+      .+.....
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHHH
Confidence            357899999964 133333333222 126799999988766666555555443   46777777543      1222221


Q ss_pred             cCCCCCceeEEEEeCC
Q 029414           97 YSENEGSFDYAFVDAD  112 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~  112 (194)
                      +   .+++|.++..+.
T Consensus        89 ~---~g~id~lv~nAg  101 (271)
T 3ek2_A           89 H---WDSLDGLVHSIG  101 (271)
T ss_dssp             H---CSCEEEEEECCC
T ss_pred             H---cCCCCEEEECCc
Confidence            1   368999987653

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=86.44  E-value=8.4  Score=28.69  Aligned_cols=86  Identities=10%  Similarity=0.021  Sum_probs=51.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-CCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE  101 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~~~  101 (194)
                      +.+++|-.|+. |..+..+++.+ ..+.+|+.++.+++..+...+.+...+.+.++.++.+|..+.  +..+.... ...
T Consensus        31 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            45788888865 44444444333 126789999999887777777776666545788888876432  22211100 002


Q ss_pred             CceeEEEEeCC
Q 029414          102 GSFDYAFVDAD  112 (194)
Q Consensus       102 ~~fD~i~id~~  112 (194)
                      +.+|.++..+.
T Consensus       110 g~iD~vi~~Ag  120 (279)
T 1xg5_A          110 SGVDICINNAG  120 (279)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57898887653

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=86.27  E-value=8.3  Score=28.48  Aligned_cols=81  Identities=11%  Similarity=0.096  Sum_probs=48.1

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEE-eCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-   98 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~i-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-   98 (194)
                      +++++|-.|++.|.   .+..|++.   +.+|+.+ +.+++..+...+.+...+  .++.++.+|..+.  ...+..+. 
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~---G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~   81 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQE---GANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAA   81 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC---CCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHH
Confidence            56889988876653   33334443   6788887 667766666666666544  3678888875431  12111100 


Q ss_pred             CCCCceeEEEEeC
Q 029414           99 ENEGSFDYAFVDA  111 (194)
Q Consensus        99 ~~~~~fD~i~id~  111 (194)
                      ...+..|.++..+
T Consensus        82 ~~~g~id~lv~nA   94 (259)
T 3edm_A           82 DKFGEIHGLVHVA   94 (259)
T ss_dssp             HHHCSEEEEEECC
T ss_pred             HHhCCCCEEEECC
Confidence            0125799988765

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=86.23  E-value=9.1  Score=28.88  Aligned_cols=105  Identities=13%  Similarity=0.191  Sum_probs=60.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcc-hHHhHHHHHHHcCCCCcEEEEecchHHH------HHHHhhc
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY   97 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~   97 (194)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.++.+.+ ..+...+.++..+  .++.++.+|..+.      +.....+
T Consensus        46 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4578888887655 333333322 12678999998875 3444444454443  4788888886431      1222111


Q ss_pred             CCCCCceeEEEEeCCc----c--------cc-----------HHHHHHHHhcccCCeEEEEe
Q 029414           98 SENEGSFDYAFVDADK----D--------NY-----------CNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        98 ~~~~~~fD~i~id~~~----~--------~~-----------~~~~~~~~~~L~~gG~lv~~  136 (194)
                         .+.+|.++..+..    .        ++           ....+.+.+.++.+|.||.-
T Consensus       123 ---~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i  181 (291)
T 3ijr_A          123 ---LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT  181 (291)
T ss_dssp             ---HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             ---cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence               2578998876431    0        01           12345566778888887763

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=86.08  E-value=5.8  Score=29.32  Aligned_cols=83  Identities=16%  Similarity=0.187  Sum_probs=52.5

Q ss_pred             CCCeEEEEcc-cc--cH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-
Q 029414           26 NAKKTIEIGV-FT--GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-   98 (194)
Q Consensus        26 ~~~~vLeiG~-G~--G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-   98 (194)
                      +++++|-.|+ |.  |. .+..|++.   +.+|+.++.+++..+...+.+...+ ..++.++.+|..+.  ...+..+. 
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~---G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~   96 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLE---GADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTV   96 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHC---CCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHH
Confidence            5678898887 44  33 34445553   6799999999988888777776554 24789998886431  12211100 


Q ss_pred             CCCCceeEEEEeCC
Q 029414           99 ENEGSFDYAFVDAD  112 (194)
Q Consensus        99 ~~~~~fD~i~id~~  112 (194)
                      ...+++|.++..+.
T Consensus        97 ~~~g~id~li~~Ag  110 (266)
T 3o38_A           97 EKAGRLDVLVNNAG  110 (266)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHhCCCcEEEECCC
Confidence            01257899887754

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=85.99  E-value=4.4  Score=29.89  Aligned_cols=82  Identities=12%  Similarity=0.069  Sum_probs=49.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch--H--H----HHHHHhh
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA--L--S----VLDQLLK   96 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--~--~----~~~~~~~   96 (194)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.++.+++..+...+.+...+. .++.++..|.  .  +    .......
T Consensus        11 ~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           11 NDRIILVTGASDG-IGREAAMTYARYGATVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHHH
Confidence            5678888887654 333333322 1267999999999888777776665432 2567777776  1  1    1222221


Q ss_pred             cCCCCCceeEEEEeCC
Q 029414           97 YSENEGSFDYAFVDAD  112 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~  112 (194)
                      .   .+.+|.++..+.
T Consensus        89 ~---~g~id~lv~nAg  101 (252)
T 3f1l_A           89 N---YPRLDGVLHNAG  101 (252)
T ss_dssp             H---CSCCSEEEECCC
T ss_pred             h---CCCCCEEEECCc
Confidence            1   367999887643

>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0

Probab=85.95  E-value=5.4  Score=26.02  Aligned_cols=80  Identities=10%  Similarity=0.112  Sum_probs=52.1

Q ss_pred             CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhc-c
Q 029414           51 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL-L  127 (194)
Q Consensus        51 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~-L  127 (194)
                      ..+|..+|-++......++.+...+.. ..-....+..+.+..+.     ...+|+|++|...+  +...+++.+.+. .
T Consensus         5 ~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~a~~~l~-----~~~~dlii~D~~l~~~~g~~~~~~lr~~~~   78 (144)
T 3kht_A            5 SKRVLVVEDNPDDIALIRRVLDRKDIH-CQLEFVDNGAKALYQVQ-----QAKYDLIILDIGLPIANGFEVMSAVRKPGA   78 (144)
T ss_dssp             CEEEEEECCCHHHHHHHHHHHHHTTCC-EEEEEESSHHHHHHHHT-----TCCCSEEEECTTCGGGCHHHHHHHHHSSST
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhcCCC-eeEEEECCHHHHHHHhh-----cCCCCEEEEeCCCCCCCHHHHHHHHHhccc
Confidence            458999999999999999999888753 12234456666665552     46799999997633  345566666542 2


Q ss_pred             cCC-eEEEEe
Q 029414          128 KVG-GIAVYD  136 (194)
Q Consensus       128 ~~g-G~lv~~  136 (194)
                      .++ -+|++.
T Consensus        79 ~~~~pii~~s   88 (144)
T 3kht_A           79 NQHTPIVILT   88 (144)
T ss_dssp             TTTCCEEEEE
T ss_pred             ccCCCEEEEe
Confidence            334 355553

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=85.92  E-value=4.5  Score=31.80  Aligned_cols=80  Identities=13%  Similarity=0.078  Sum_probs=47.2

Q ss_pred             CCCeEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEe
Q 029414           26 NAKKTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~-~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      ...+|+-+|+|. |. .+..|+.. + -++++.+|.+.                   ...+.+.+++.+.+..-+++.+.
T Consensus        35 ~~~~VlivG~GGlG~~ia~~La~~-G-vg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~  112 (346)
T 1y8q_A           35 RASRVLLVGLKGLGAEIAKNLILA-G-VKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDT  112 (346)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHH-T-CSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEEC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHc-C-CCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEe
Confidence            457899999963 43 33334443 2 57999998753                   23455667777654333466666


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCc
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADK  113 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~  113 (194)
                      .+..+....+      ...||+|+.....
T Consensus       113 ~~~~~~~~~~------~~~~dvVv~~~d~  135 (346)
T 1y8q_A          113 EDIEKKPESF------FTQFDAVCLTCCS  135 (346)
T ss_dssp             SCGGGCCHHH------HTTCSEEEEESCC
T ss_pred             cccCcchHHH------hcCCCEEEEcCCC
Confidence            5543322233      2579999876553

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=85.73  E-value=9.7  Score=28.76  Aligned_cols=105  Identities=15%  Similarity=0.174  Sum_probs=60.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCc--chHHhHHHHHHHcCCCCcEEEEecchHHH------HHHHhh
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNR--ETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLK   96 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~   96 (194)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.++.+.  +..+...+.++..+  .++.++.+|..+.      ......
T Consensus        48 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGGDSG-IGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4578888887654 333333322 1267899888763  34555555555554  3688888876431      122111


Q ss_pred             cCCCCCceeEEEEeCCcc------------cc-----------HHHHHHHHhcccCCeEEEEe
Q 029414           97 YSENEGSFDYAFVDADKD------------NY-----------CNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~~~------------~~-----------~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +   .+.+|.++..+...            ++           ....+.+.+.++.+|.||.-
T Consensus       125 ~---~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i  184 (294)
T 3r3s_A          125 A---LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT  184 (294)
T ss_dssp             H---HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             H---cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence            1   25789988765410            01           12345566778888887764

>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}

Probab=85.67  E-value=4.7  Score=26.90  Aligned_cols=68  Identities=16%  Similarity=0.249  Sum_probs=48.5

Q ss_pred             CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHH
Q 029414           50 EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM  124 (194)
Q Consensus        50 ~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~  124 (194)
                      ++-+|..+|-++......+..++..|.. .+ ....+..+.+..+.     ...||+|++|..-+  +-.++++.+.
T Consensus        11 k~~rILiVDD~~~~r~~l~~~L~~~G~~-~v-~~a~~g~~al~~~~-----~~~~DlillD~~MP~mdG~el~~~ir   80 (134)
T 3to5_A           11 KNMKILIVDDFSTMRRIVKNLLRDLGFN-NT-QEADDGLTALPMLK-----KGDFDFVVTDWNMPGMQGIDLLKNIR   80 (134)
T ss_dssp             TTCCEEEECSCHHHHHHHHHHHHHTTCC-CE-EEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCc-EE-EEECCHHHHHHHHH-----hCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence            3568999999999999999999988864 22 34467766655543     25799999998643  3445556554

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=85.66  E-value=4.1  Score=29.73  Aligned_cols=82  Identities=13%  Similarity=0.085  Sum_probs=50.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch--H--H----HHHHHhh
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA--L--S----VLDQLLK   96 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--~--~----~~~~~~~   96 (194)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.++.+++..+...+.+...+.. ++.++..|.  .  +    .......
T Consensus        13 ~~k~vlITGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           13 KGRVILVTGAARG-IGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQP-QPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSC-CCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCC-CceEEEeccccCCHHHHHHHHHHHHH
Confidence            5678888887544 333333333 12679999999998888888888776533 556666554  1  1    1222211


Q ss_pred             cCCCCCceeEEEEeCC
Q 029414           97 YSENEGSFDYAFVDAD  112 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~  112 (194)
                      .   .+.+|.++..+.
T Consensus        91 ~---~g~id~lv~nAg  103 (247)
T 3i1j_A           91 E---FGRLDGLLHNAS  103 (247)
T ss_dssp             H---HSCCSEEEECCC
T ss_pred             h---CCCCCEEEECCc
Confidence            1   257899887653

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=85.53  E-value=8.3  Score=28.56  Aligned_cols=79  Identities=15%  Similarity=0.107  Sum_probs=53.1

Q ss_pred             cCCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH------HHHHh
Q 029414           25 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLL   95 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~   95 (194)
                      .+++++|-.|++.|.   .+..|++.   +.+|+.++.+++.++...+.+...+  .++.++.+|..+.      +....
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~   83 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQ---GADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETM   83 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHC---cCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHH
Confidence            356889998886653   33444443   6799999999988888877777654  3788888875432      22222


Q ss_pred             hcCCCCCceeEEEEeC
Q 029414           96 KYSENEGSFDYAFVDA  111 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~  111 (194)
                      .+   .++.|.++..+
T Consensus        84 ~~---~g~id~lv~nA   96 (264)
T 3ucx_A           84 KA---YGRVDVVINNA   96 (264)
T ss_dssp             HH---TSCCSEEEECC
T ss_pred             HH---cCCCcEEEECC
Confidence            11   36799988765

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=85.31  E-value=12  Score=29.46  Aligned_cols=92  Identities=10%  Similarity=-0.027  Sum_probs=56.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      +..+|.-||+|  ..+..+|..+. .+..|+++|.+++..+.+.+    .+.    . ...+..+....       ....
T Consensus        21 ~~mkIgiIGlG--~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~----~g~----~-~~~s~~e~~~~-------a~~~   82 (358)
T 4e21_A           21 QSMQIGMIGLG--RMGADMVRRLRKGGHECVVYDLNVNAVQALER----EGI----A-GARSIEEFCAK-------LVKP   82 (358)
T ss_dssp             -CCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT----TTC----B-CCSSHHHHHHH-------SCSS
T ss_pred             cCCEEEEECch--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----CCC----E-EeCCHHHHHhc-------CCCC
Confidence            34679999875  44444443331 25689999999877665442    232    1 12344444443       2457


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      |+|++..........++.+.+.+++|.+|+-
T Consensus        83 DvVi~~vp~~~v~~vl~~l~~~l~~g~iiId  113 (358)
T 4e21_A           83 RVVWLMVPAAVVDSMLQRMTPLLAANDIVID  113 (358)
T ss_dssp             CEEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             CEEEEeCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence            9999876655667778888888888766554

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=85.26  E-value=5.3  Score=32.69  Aligned_cols=112  Identities=16%  Similarity=0.111  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHHHHHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           11 APDAGQLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      .....+++..+-... +.++|+=+|.  |..+..+|+.+.....+..+|.+++..+.+.+.+     + +..+++||+.+
T Consensus       218 ~~~i~~~~~~~g~~~~~~~~v~I~Gg--G~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l-----~-~~~Vi~GD~td  289 (461)
T 4g65_A          218 SNHIRSVMSELQRLEKPYRRIMIVGG--GNIGASLAKRLEQTYSVKLIERNLQRAEKLSEEL-----E-NTIVFCGDAAD  289 (461)
T ss_dssp             TTTHHHHHHHTTGGGSCCCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHC-----T-TSEEEESCTTC
T ss_pred             cchHHHHHHhhccccccccEEEEEcc--hHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHC-----C-CceEEeccccc
Confidence            334555555554433 3568888876  6677778877776789999999998887766654     3 67899999876


Q ss_pred             --HHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414           90 --VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        90 --~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                        .+.+-     .-+..|+++.--......-+...+.+.+...=++..
T Consensus       290 ~~~L~ee-----~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~  332 (461)
T 4g65_A          290 QELLTEE-----NIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVL  332 (461)
T ss_dssp             HHHHHHT-----TGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             hhhHhhc-----CchhhcEEEEcccCcHHHHHHHHHHHHcCCcccccc
Confidence              33331     135789888754433333333444455555444443

>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0

Probab=85.22  E-value=5.7  Score=25.71  Aligned_cols=77  Identities=16%  Similarity=0.070  Sum_probs=49.4

Q ss_pred             CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccc----cHHHHHHHHhc
Q 029414           51 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----YCNYHERLMKL  126 (194)
Q Consensus        51 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~----~~~~~~~~~~~  126 (194)
                      ..+|..+|-++......++.+...+.  .+. ...+..+.+..+     ....+|+|++|...+.    ...+++.+.+.
T Consensus         6 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l-----~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~   77 (136)
T 3kto_A            6 HPIIYLVDHQKDARAALSKLLSPLDV--TIQ-CFASAESFMRQQ-----ISDDAIGMIIEAHLEDKKDSGIELLETLVKR   77 (136)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHTTSSS--EEE-EESSHHHHTTSC-----CCTTEEEEEEETTGGGBTTHHHHHHHHHHHT
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHH-----hccCCCEEEEeCcCCCCCccHHHHHHHHHhC
Confidence            45899999999999999988877654  333 445655554443     2367999999977433    34556655544


Q ss_pred             ccCC-eEEEEe
Q 029414          127 LKVG-GIAVYD  136 (194)
Q Consensus       127 L~~g-G~lv~~  136 (194)
                       .++ -+|++.
T Consensus        78 -~~~~~ii~~s   87 (136)
T 3kto_A           78 -GFHLPTIVMA   87 (136)
T ss_dssp             -TCCCCEEEEE
T ss_pred             -CCCCCEEEEE
Confidence             344 344443

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=85.21  E-value=7.5  Score=31.12  Aligned_cols=90  Identities=18%  Similarity=0.020  Sum_probs=52.3

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCC----CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCC
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPED----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE  101 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~  101 (194)
                      ++|+-+|+|  ..+..++..+...    .+|+..+.+++..+...+.+...+ ..++..+..|..+  .+..+..+    
T Consensus         2 ~kVlIiGaG--giG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~----   74 (405)
T 4ina_A            2 AKVLQIGAG--GVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINE----   74 (405)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHH----
T ss_pred             CEEEEECCC--HHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHh----
Confidence            468889884  5555555443222    389999999888777666665432 1256777777532  23333211    


Q ss_pred             CceeEEEEeCCccccHHHHHHHH
Q 029414          102 GSFDYAFVDADKDNYCNYHERLM  124 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~  124 (194)
                      ...|+|+............+.+.
T Consensus        75 ~~~DvVin~ag~~~~~~v~~a~l   97 (405)
T 4ina_A           75 VKPQIVLNIALPYQDLTIMEACL   97 (405)
T ss_dssp             HCCSEEEECSCGGGHHHHHHHHH
T ss_pred             hCCCEEEECCCcccChHHHHHHH
Confidence            14898887655433334444443

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=84.99  E-value=5.8  Score=32.14  Aligned_cols=77  Identities=18%  Similarity=0.162  Sum_probs=45.4

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEE-EEeCCcchHHhHHHHHHHcCCCCcEEEEec---chHHHHHHHhhcCCC
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSEN  100 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~-~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~~~  100 (194)
                      +..+|.-||||. |..-+......+ +.+++ .+|.+++..+.+.+.+.+.+.+ ....+.+   |..+.+.        
T Consensus        19 ~~~rvgiIG~G~~g~~h~~~l~~~~-~~~lvav~d~~~~~~~~~a~~~~~~g~~-~~~~~~~~~~~~~~ll~--------   88 (444)
T 2ixa_A           19 KKVRIAFIAVGLRGQTHVENMARRD-DVEIVAFADPDPYMVGRAQEILKKNGKK-PAKVFGNGNDDYKNMLK--------   88 (444)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCT-TEEEEEEECSCHHHHHHHHHHHHHTTCC-CCEEECSSTTTHHHHTT--------
T ss_pred             CCceEEEEecCHHHHHHHHHHHhCC-CcEEEEEEeCCHHHHHHHHHHHHhcCCC-CCceeccCCCCHHHHhc--------
Confidence            456899999973 322222222333 55654 5699988887777766666654 3445432   4444332        


Q ss_pred             CCceeEEEEeCC
Q 029414          101 EGSFDYAFVDAD  112 (194)
Q Consensus       101 ~~~fD~i~id~~  112 (194)
                      ....|+|++..+
T Consensus        89 ~~~vD~V~i~tp  100 (444)
T 2ixa_A           89 DKNIDAVFVSSP  100 (444)
T ss_dssp             CTTCCEEEECCC
T ss_pred             CCCCCEEEEcCC
Confidence            256999998754

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=84.86  E-value=1.9  Score=33.39  Aligned_cols=91  Identities=10%  Similarity=0.034  Sum_probs=54.5

Q ss_pred             CCCeEEEEccccc--HHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC---CcEEEE-----ecchHHHHHHHh
Q 029414           26 NAKKTIEIGVFTG--YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFI-----ESEALSVLDQLL   95 (194)
Q Consensus        26 ~~~~vLeiG~G~G--~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~v~~~-----~~d~~~~~~~~~   95 (194)
                      ...+|.-||+|.=  ..+..|++.   +..|+.+ .+++.++..++.    ++.   +...+.     ..+.    ..  
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~---G~~V~l~-~~~~~~~~i~~~----g~~~~~~~~~~~~~~~~~~~~----~~--   83 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARA---GHEVILI-ARPQHVQAIEAT----GLRLETQSFDEQVKVSASSDP----SA--   83 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHT---TCEEEEE-CCHHHHHHHHHH----CEEEECSSCEEEECCEEESCG----GG--
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHC---CCeEEEE-EcHhHHHHHHhC----CeEEEcCCCcEEEeeeeeCCH----HH--
Confidence            4578999998642  233334432   4578888 877777665543    211   011110     1121    11  


Q ss_pred             hcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414           96 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                           ...+|+|++........+.++.+.+.++++..++.
T Consensus        84 -----~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~  118 (318)
T 3hwr_A           84 -----VQGADLVLFCVKSTDTQSAALAMKPALAKSALVLS  118 (318)
T ss_dssp             -----GTTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEE
T ss_pred             -----cCCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEE
Confidence                 25689999987766777888888889998877664

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=84.83  E-value=3.3  Score=37.45  Aligned_cols=79  Identities=8%  Similarity=-0.095  Sum_probs=52.8

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcC--------
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS--------   98 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--------   98 (194)
                      .-+++|+.||.|..++.|..+.- ...+.++|+++.+.+..+.|+     + ...++.+|..++.......+        
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~-~~vv~avEid~~A~~ty~~N~-----p-~~~~~~~DI~~l~~~~~~~di~~~~~~~  612 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGI-SDTLWAIEMWDPAAQAFRLNN-----P-GSTVFTEDCNILLKLVMAGETTNSRGQR  612 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTS-EEEEEEECSSHHHHHHHHHHC-----T-TSEEECSCHHHHHHHHHHTCSBCTTCCB
T ss_pred             CCeEEEeccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhC-----C-CCccccccHHHHhhhccchhhhhhhhhh
Confidence            34899999999999999977521 125779999998888777664     2 55677888766543211100        


Q ss_pred             -CCCCceeEEEEeCC
Q 029414           99 -ENEGSFDYAFVDAD  112 (194)
Q Consensus        99 -~~~~~fD~i~id~~  112 (194)
                       ...+.+|+|+...+
T Consensus       613 lp~~~~vDll~GGpP  627 (1002)
T 3swr_A          613 LPQKGDVEMLCGGPP  627 (1002)
T ss_dssp             CCCTTTCSEEEECCC
T ss_pred             cccCCCeeEEEEcCC
Confidence             01246898887643

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=84.47  E-value=0.93  Score=34.43  Aligned_cols=36  Identities=22%  Similarity=0.445  Sum_probs=25.2

Q ss_pred             CceeEEEEeCC----ccccHH----------HHHHHHhcccCCeEEEEec
Q 029414          102 GSFDYAFVDAD----KDNYCN----------YHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       102 ~~fD~i~id~~----~~~~~~----------~~~~~~~~L~~gG~lv~~~  137 (194)
                      +.||+||++..    ...+++          .-..+.++|+|||.+++..
T Consensus       210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~a  259 (324)
T 3trk_A          210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRA  259 (324)
T ss_dssp             CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence            89999999965    122222          1234468999999999854

>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}

Probab=84.42  E-value=6.5  Score=25.66  Aligned_cols=78  Identities=10%  Similarity=0.095  Sum_probs=50.4

Q ss_pred             CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhc-c
Q 029414           51 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL-L  127 (194)
Q Consensus        51 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~-L  127 (194)
                      ..+|..+|-++......+..+...+.  .+. ...+..+.+..+.     ...+|+|++|...+  +...+++.+.+. .
T Consensus         8 ~~~iLivd~~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~~~   79 (147)
T 2zay_A            8 WWRIMLVDTQLPALAASISALSQEGF--DII-QCGNAIEAVPVAV-----KTHPHLIITEANMPKISGMDLFNSLKKNPQ   79 (147)
T ss_dssp             CEEEEEECTTGGGGHHHHHHHHHHTE--EEE-EESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHHTSTT
T ss_pred             CceEEEEeCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHH-----cCCCCEEEEcCCCCCCCHHHHHHHHHcCcc
Confidence            46899999999999999999987664  343 4455555554442     24699999997632  345566666542 2


Q ss_pred             cCC-eEEEEe
Q 029414          128 KVG-GIAVYD  136 (194)
Q Consensus       128 ~~g-G~lv~~  136 (194)
                      .++ -+|++.
T Consensus        80 ~~~~pii~ls   89 (147)
T 2zay_A           80 TASIPVIALS   89 (147)
T ss_dssp             TTTSCEEEEE
T ss_pred             cCCCCEEEEe
Confidence            233 455553

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=84.21  E-value=11  Score=27.90  Aligned_cols=86  Identities=17%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-CCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE  101 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~~~  101 (194)
                      .++++|-.|++.| .+..+++.+ ..+.+|+.++.+++..+...+.+.......++.++.+|..+.  +....... ...
T Consensus         6 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCc-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            4578888886544 334433332 126789999998876665555443321123678888876432  12211100 012


Q ss_pred             CceeEEEEeCC
Q 029414          102 GSFDYAFVDAD  112 (194)
Q Consensus       102 ~~fD~i~id~~  112 (194)
                      +++|.++..+.
T Consensus        85 g~id~lv~~Ag   95 (267)
T 2gdz_A           85 GRLDILVNNAG   95 (267)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57899887754

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=84.03  E-value=2.9  Score=31.54  Aligned_cols=85  Identities=9%  Similarity=0.088  Sum_probs=51.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH---HHHHhhcC-CC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV---LDQLLKYS-EN  100 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~~~-~~  100 (194)
                      ++++||-.|++.| .+..+++.+ ..+.+|+.++.+++..+.+.+.+...+- .++.++..|..+.   ...+.... ..
T Consensus        11 ~~k~vlITGas~G-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           11 KRRCAVVTGGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             -CCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            5678888887544 333333332 1267999999999888777777765543 3788888876432   22211100 01


Q ss_pred             CCceeEEEEeCC
Q 029414          101 EGSFDYAFVDAD  112 (194)
Q Consensus       101 ~~~fD~i~id~~  112 (194)
                      .+.+|+++..+.
T Consensus        89 ~g~iD~lv~nAg  100 (311)
T 3o26_A           89 FGKLDILVNNAG  100 (311)
T ss_dssp             HSSCCEEEECCC
T ss_pred             CCCCCEEEECCc
Confidence            257999988765

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=84.02  E-value=11  Score=27.78  Aligned_cols=81  Identities=15%  Similarity=0.040  Sum_probs=53.3

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-C
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-E   99 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~   99 (194)
                      +++++|-.|++.|.   .+..|++.   +.+|+.++.+++.++.+.+.+...+  .++.++.+|..+.  ...+.... .
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAE---GFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADA   80 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHT---TCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHh
Confidence            56788888877653   33334442   6799999999998888888887664  4788888886432  22221110 1


Q ss_pred             CCCceeEEEEeCC
Q 029414          100 NEGSFDYAFVDAD  112 (194)
Q Consensus       100 ~~~~fD~i~id~~  112 (194)
                      . +.+|.++..+.
T Consensus        81 ~-g~id~lv~nAg   92 (252)
T 3h7a_A           81 H-APLEVTIFNVG   92 (252)
T ss_dssp             H-SCEEEEEECCC
T ss_pred             h-CCceEEEECCC
Confidence            1 57999887654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=83.99  E-value=4.6  Score=30.59  Aligned_cols=96  Identities=10%  Similarity=0.049  Sum_probs=53.1

Q ss_pred             CeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEE------EecchHHHHHHHhhcCCC
Q 029414           28 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINF------IESEALSVLDQLLKYSEN  100 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~------~~~d~~~~~~~~~~~~~~  100 (194)
                      .+|.-||+|.  .+..+|..+. .+.+|+.+|.+++..+..++.    +.  ++..      ..-+.... .+..   ..
T Consensus         4 m~i~iiG~G~--~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~----g~--~~~~~~~~~~~~~~~~~~-~~~~---~~   71 (316)
T 2ew2_A            4 MKIAIAGAGA--MGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN----GL--IADFNGEEVVANLPIFSP-EEID---HQ   71 (316)
T ss_dssp             CEEEEECCSH--HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH----CE--EEEETTEEEEECCCEECG-GGCC---TT
T ss_pred             CeEEEECcCH--HHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC----CE--EEEeCCCeeEecceeecc-hhhc---cc
Confidence            4688899854  3333333221 145899999998777655443    21  1110      00000000 0110   00


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      -...|+|++........+.++.+.+.++++.+++.
T Consensus        72 ~~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~  106 (316)
T 2ew2_A           72 NEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLC  106 (316)
T ss_dssp             SCCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             CCCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEE
Confidence            12789999977655666777778788888776665

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=83.85  E-value=10  Score=28.42  Aligned_cols=82  Identities=20%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-C
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-E   99 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~   99 (194)
                      +++++|-.|++.|.   .+..|++.   +.+|+.++.+++..+...+.+...+  .++.++.+|..+.  ...+..+. .
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~---G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~  105 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEA---GAQVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTG  105 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT---TCEEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            56788888876553   33334442   6799999999988888887777655  3677888875431  22211100 0


Q ss_pred             CCCceeEEEEeCC
Q 029414          100 NEGSFDYAFVDAD  112 (194)
Q Consensus       100 ~~~~fD~i~id~~  112 (194)
                      ..+++|.++..+.
T Consensus       106 ~~g~iD~lvnnAg  118 (276)
T 3r1i_A          106 ELGGIDIAVCNAG  118 (276)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            1257999987654

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=83.83  E-value=11  Score=27.91  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=60.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCC-cchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-CC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-EN  100 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~~  100 (194)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.++.. .+..+...+.+...+  .++.++..|..+.  ...+..+. ..
T Consensus        17 ~~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           17 DGKVALVTGSGRG-IGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             TTCEEEESCTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4678888887654 333333322 126788887754 455666666666554  4788888885431  11111100 01


Q ss_pred             CCceeEEEEeCCc-----------ccc-----------HHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADK-----------DNY-----------CNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~-----------~~~-----------~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+..|.++..+..           +++           ....+.+.+.++++|.||+-.
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  152 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTS  152 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            2578988865431           011           123455667787788887743

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=83.74  E-value=11  Score=27.60  Aligned_cols=84  Identities=19%  Similarity=0.146  Sum_probs=51.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-CCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE  101 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~~~  101 (194)
                      +.+++|-.|+..| .+..+++.+ ..+.+|+.++.+++..+...+.+...+  .++.++.+|..+.  ...+..+. ...
T Consensus         8 ~~k~vlITGas~g-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            8 ENKVGIVTGSGGG-IGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            5678888887554 333333332 126799999999988888777776554  3788888886432  12211100 012


Q ss_pred             CceeEEEEeCC
Q 029414          102 GSFDYAFVDAD  112 (194)
Q Consensus       102 ~~fD~i~id~~  112 (194)
                      +.+|.++..+.
T Consensus        85 g~id~li~~Ag   95 (253)
T 3qiv_A           85 GGIDYLVNNAA   95 (253)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57999987653

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=83.56  E-value=11  Score=27.64  Aligned_cols=81  Identities=12%  Similarity=0.065  Sum_probs=52.0

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecchHHH------HHHHh
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSV------LDQLL   95 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~------~~~~~   95 (194)
                      ..+++|-.|++.|.   .+..|++.   +.+|+.++.+++..+...+.+...... .++.++..|..+.      +....
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   82 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATD---GYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH   82 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHH---TCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence            56788888876553   33445543   679999999998888877777654322 4678888775431      12211


Q ss_pred             hcCCCCCceeEEEEeCC
Q 029414           96 KYSENEGSFDYAFVDAD  112 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~  112 (194)
                      ..   .+..|.++..+.
T Consensus        83 ~~---~g~iD~lvnnAg   96 (250)
T 3nyw_A           83 QK---YGAVDILVNAAA   96 (250)
T ss_dssp             HH---HCCEEEEEECCC
T ss_pred             Hh---cCCCCEEEECCC
Confidence            11   267999887654

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=83.47  E-value=13  Score=28.93  Aligned_cols=93  Identities=8%  Similarity=0.038  Sum_probs=52.0

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEE-EEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~-~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      +..+|.-||||. |..-+......+++.+++ .+|.+++..+.+.+.+   +    +. ...|..+.+..        ..
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~---~----~~-~~~~~~~ll~~--------~~   75 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT---G----AR-GHASLTDMLAQ--------TD   75 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH---C----CE-EESCHHHHHHH--------CC
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc---C----Cc-eeCCHHHHhcC--------CC
Confidence            346899999983 443233233331256665 5788887665554443   3    32 33566666543        57


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .|+|++..+.......   +...|+.|-.+++..
T Consensus        76 ~D~V~i~tp~~~h~~~---~~~al~~gk~v~~EK  106 (354)
T 3q2i_A           76 ADIVILTTPSGLHPTQ---SIECSEAGFHVMTEK  106 (354)
T ss_dssp             CSEEEECSCGGGHHHH---HHHHHHTTCEEEECS
T ss_pred             CCEEEECCCcHHHHHH---HHHHHHCCCCEEEeC
Confidence            8999987654333222   334455565555543

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=83.40  E-value=2  Score=37.64  Aligned_cols=61  Identities=11%  Similarity=-0.107  Sum_probs=44.9

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCC---C-CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPE---D-GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~---~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      ..+++|+.||.|..++.|-.+...   . ..+.++|+++.+.+.-+.|+     + ...++..|..++.+.
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh-----p-~~~~~~~di~~i~~~  276 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH-----P-QTEVRNEKADEFLAL  276 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC-----T-TSEEEESCHHHHHHH
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC-----C-CCceecCcHHHhhhh
Confidence            458999999999999988664210   0 25788999998888777765     2 567788888776544

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=83.38  E-value=7.9  Score=29.08  Aligned_cols=90  Identities=17%  Similarity=0.129  Sum_probs=51.8

Q ss_pred             CCeEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           27 AKKTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        27 ~~~vLeiG~G~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ..+|.-||+|. |. .+..++.... +.+|+++|.+++..+.+++    .+...  .. ..+..+.          -...
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~-~~~V~~~d~~~~~~~~~~~----~g~~~--~~-~~~~~~~----------~~~a   67 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHP-HYKIVGYNRSDRSRDIALE----RGIVD--EA-TADFKVF----------AALA   67 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSSHHHHHHHHH----TTSCS--EE-ESCTTTT----------GGGC
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHH----cCCcc--cc-cCCHHHh----------hcCC
Confidence            35788999864 22 2333443321 4589999999877665443    33211  11 1222111          1357


Q ss_pred             eEEEEeCCccccHHHHHHHHhc-ccCCeEEE
Q 029414          105 DYAFVDADKDNYCNYHERLMKL-LKVGGIAV  134 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~-L~~gG~lv  134 (194)
                      |+|++..........++.+.+. ++++.+++
T Consensus        68 DvVilavp~~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           68 DVIILAVPIKKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             SEEEECSCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             CEEEEcCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence            8998876655556677777777 77766554

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=83.37  E-value=12  Score=27.74  Aligned_cols=84  Identities=18%  Similarity=0.165  Sum_probs=46.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcc---hHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRE---TYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-   98 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~---~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-   98 (194)
                      +++++|-.|++.| .+..+++.+. .+.+|+.++.+..   ..+...+.+...+  .++.++..|..+.  ...+..+. 
T Consensus        10 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A           10 KNKVIVIAGGIKN-LGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence            4678888887655 4444444332 3678888876543   3444444444433  4788888875331  12211100 


Q ss_pred             CCCCceeEEEEeCC
Q 029414           99 ENEGSFDYAFVDAD  112 (194)
Q Consensus        99 ~~~~~fD~i~id~~  112 (194)
                      ...++.|.++..+.
T Consensus        87 ~~~g~iD~lvnnAg  100 (262)
T 3ksu_A           87 KEFGKVDIAINTVG  100 (262)
T ss_dssp             HHHCSEEEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence            01267999887654

>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A

Probab=83.33  E-value=7.6  Score=25.56  Aligned_cols=76  Identities=11%  Similarity=0.040  Sum_probs=49.5

Q ss_pred             CEEEEEeCCcchHHhHHHHHHHcCCCCcEEE-EecchHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhccc
Q 029414           52 GQITAIDVNRETYEIGLPIIKKAGVDHKINF-IESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLK  128 (194)
Q Consensus        52 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~-~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~  128 (194)
                      -+|..+|-++...+..+..+...+.  ...+ ...+..+.+..+.     ...+|+|++|...  .+...+++.+.+. .
T Consensus        21 ~~iLivdd~~~~~~~l~~~L~~~~~--~~~v~~~~~~~~al~~l~-----~~~~dlii~D~~l~~~~g~~~~~~l~~~-~   92 (150)
T 4e7p_A           21 MKVLVAEDQSMLRDAMCQLLTLQPD--VESVLQAKNGQEAIQLLE-----KESVDIAILDVEMPVKTGLEVLEWIRSE-K   92 (150)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTSTT--EEEEEEESSHHHHHHHHT-----TSCCSEEEECSSCSSSCHHHHHHHHHHT-T
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCC--cEEEEEECCHHHHHHHhh-----ccCCCEEEEeCCCCCCcHHHHHHHHHHh-C
Confidence            4799999999999888888876541  2333 3455656655552     3679999999763  3445666666554 3


Q ss_pred             CCe-EEEE
Q 029414          129 VGG-IAVY  135 (194)
Q Consensus       129 ~gG-~lv~  135 (194)
                      ++. +|++
T Consensus        93 ~~~~ii~l  100 (150)
T 4e7p_A           93 LETKVVVV  100 (150)
T ss_dssp             CSCEEEEE
T ss_pred             CCCeEEEE
Confidence            444 4444

>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}

Probab=83.24  E-value=7.8  Score=25.60  Aligned_cols=77  Identities=17%  Similarity=0.128  Sum_probs=50.9

Q ss_pred             CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhccc
Q 029414           51 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK  128 (194)
Q Consensus        51 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~L~  128 (194)
                      ..+|..+|-++......+..+...+.  .+. ...+..+.+..+.     ...+|+|++|...+  +...+++.+.+. .
T Consensus         7 ~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~~-~   77 (154)
T 2rjn_A            7 NYTVMLVDDEQPILNSLKRLIKRLGC--NII-TFTSPLDALEALK-----GTSVQLVISDMRMPEMGGEVFLEQVAKS-Y   77 (154)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESCHHHHHHHHT-----TSCCSEEEEESSCSSSCHHHHHHHHHHH-C
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHh-----cCCCCEEEEecCCCCCCHHHHHHHHHHh-C
Confidence            56899999999999999998887654  344 4456666655552     35699999997633  344556666543 3


Q ss_pred             CC-eEEEEe
Q 029414          129 VG-GIAVYD  136 (194)
Q Consensus       129 ~g-G~lv~~  136 (194)
                      |+ -+|++.
T Consensus        78 ~~~~ii~ls   86 (154)
T 2rjn_A           78 PDIERVVIS   86 (154)
T ss_dssp             TTSEEEEEE
T ss_pred             CCCcEEEEe
Confidence            44 344443

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=83.21  E-value=2.3  Score=34.63  Aligned_cols=107  Identities=18%  Similarity=0.230  Sum_probs=54.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhc-----CC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY-----SE   99 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-----~~   99 (194)
                      .+.+.--||.  |+.++.+|..+.. +.+|+++|++++.++..++.    . .   .+..-...+.+......     ..
T Consensus        10 ~~~~~~ViGl--GyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g----~-~---pi~epgl~~ll~~~~~~g~l~~tt   79 (431)
T 3ojo_A           10 HGSKLTVVGL--GYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNG----Q-I---SIEEPGLQEVYEEVLSSGKLKVST   79 (431)
T ss_dssp             --CEEEEECC--STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT----C-C---SSCCTTHHHHHHHHHHTTCEEEES
T ss_pred             cCCccEEEee--CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCC----C-C---CcCCCCHHHHHHhhcccCceEEeC
Confidence            3455666776  4444444433321 46899999999888765542    1 0   01111111221110000     00


Q ss_pred             CCCceeEEEEeCCccc------------cHHHHHHHHhcccCCeEEEEecccccc
Q 029414          100 NEGSFDYAFVDADKDN------------YCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~------------~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      ....-|+||+.-+.+.            .....+.+.+.|++|.++|...+..+|
T Consensus        80 d~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pg  134 (431)
T 3ojo_A           80 TPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPK  134 (431)
T ss_dssp             SCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTT
T ss_pred             chhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChh
Confidence            0134788888654211            344456777889998877765554433

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=83.14  E-value=9.8  Score=28.47  Aligned_cols=79  Identities=13%  Similarity=0.127  Sum_probs=50.3

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH------HHHHhh
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLK   96 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~   96 (194)
                      +++++|-.|++.|.   .+..|++.   +.+|+.++.+++..+...+.+...+  .++.++.+|..+.      +.....
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~---G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~   97 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAAR---GIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVE   97 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            56789988876552   33344443   6799999999888887777776554  4688888886431      122111


Q ss_pred             cCCCCCceeEEEEeCC
Q 029414           97 YSENEGSFDYAFVDAD  112 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~  112 (194)
                      .   .++.|.++..+.
T Consensus        98 ~---~g~id~lv~nAg  110 (279)
T 3sju_A           98 R---FGPIGILVNSAG  110 (279)
T ss_dssp             H---HCSCCEEEECCC
T ss_pred             H---cCCCcEEEECCC
Confidence            1   257899887653

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=83.00  E-value=7.6  Score=29.48  Aligned_cols=82  Identities=10%  Similarity=0.056  Sum_probs=50.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH------HHHHhhcC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS   98 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~   98 (194)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.++.+++..+...+.+...+. .++.++.+|..+.      ......+ 
T Consensus        40 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~-  116 (293)
T 3rih_A           40 SARSVLVTGGTKG-IGRGIATVFARAGANVAVAARSPRELSSVTAELGELGA-GNVIGVRLDVSDPGSCADAARTVVDA-  116 (293)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSS-SCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC-CcEEEEEEeCCCHHHHHHHHHHHHHH-
Confidence            4567887776544 333333322 1267999999999888877777765542 3788888886432      1222111 


Q ss_pred             CCCCceeEEEEeCC
Q 029414           99 ENEGSFDYAFVDAD  112 (194)
Q Consensus        99 ~~~~~fD~i~id~~  112 (194)
                        .+.+|.++..+.
T Consensus       117 --~g~iD~lvnnAg  128 (293)
T 3rih_A          117 --FGALDVVCANAG  128 (293)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --cCCCCEEEECCC
Confidence              357899887653

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=82.96  E-value=8.7  Score=29.15  Aligned_cols=84  Identities=17%  Similarity=0.230  Sum_probs=52.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-CCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE  101 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~~~  101 (194)
                      .++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+...+  .++.++..|..+.  ...+..+. ...
T Consensus        30 ~gk~vlVTGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           30 DGRAAVVTGGASG-IGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            5678998887655 333333322 126799999999988888877777654  3688888886432  22211100 012


Q ss_pred             CceeEEEEeCC
Q 029414          102 GSFDYAFVDAD  112 (194)
Q Consensus       102 ~~fD~i~id~~  112 (194)
                      +.+|+++..+.
T Consensus       107 g~id~lvnnAg  117 (301)
T 3tjr_A          107 GGVDVVFSNAG  117 (301)
T ss_dssp             SSCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57999887754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=82.91  E-value=12  Score=27.70  Aligned_cols=79  Identities=13%  Similarity=0.122  Sum_probs=44.4

Q ss_pred             CCCeEEEEcccc-cHHHH-HHHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEe
Q 029414           26 NAKKTIEIGVFT-GYSLL-LTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~-~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      +..+|+-+|+|. |...+ .|+.. + -++++.+|.+.                   ...+.+++++......-+++.+.
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~-G-vg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  104 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGA-G-VGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ  104 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHT-T-CSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHc-C-CCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence            458899999974 54333 34433 2 47899998764                   33455666666544222455554


Q ss_pred             cchH-HHHHHHhhcCCCCCceeEEEEeCC
Q 029414           85 SEAL-SVLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        85 ~d~~-~~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      .+.. +....+.      ..+|+|+...+
T Consensus       105 ~~~~~~~~~~~~------~~~DvVi~~~d  127 (251)
T 1zud_1          105 QRLTGEALKDAV------ARADVVLDCTD  127 (251)
T ss_dssp             SCCCHHHHHHHH------HHCSEEEECCS
T ss_pred             ccCCHHHHHHHH------hcCCEEEECCC
Confidence            3322 2233332      46898885444

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=82.86  E-value=12  Score=27.53  Aligned_cols=82  Identities=20%  Similarity=0.175  Sum_probs=51.8

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-C
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-E   99 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~   99 (194)
                      +++++|-.|++.|.   .+..|++.   +.+|+.++.+++..+...+.+...+  .++.++.+|..+.  ...+..+. .
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~   85 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKA---GASVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALD   85 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            56788888876553   33344443   6799999999988888777777654  4788888876432  11111100 0


Q ss_pred             CCCceeEEEEeCC
Q 029414          100 NEGSFDYAFVDAD  112 (194)
Q Consensus       100 ~~~~fD~i~id~~  112 (194)
                      ..++.|.++..+.
T Consensus        86 ~~g~id~lv~nAg   98 (256)
T 3gaf_A           86 QFGKITVLVNNAG   98 (256)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            1257899887653

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=82.86  E-value=11  Score=27.29  Aligned_cols=84  Identities=13%  Similarity=0.129  Sum_probs=51.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhc-CCCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY-SENE  101 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~-~~~~  101 (194)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.++.+++..+...+.+...+  .++.++..|..+.  ...+..+ ....
T Consensus         4 ~~k~vlITGas~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            4 NEKVALVTGASRG-IGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN   80 (247)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4577888886544 333333322 126799999999988888777777664  3688888886432  2221111 0124


Q ss_pred             CceeEEEEeCC
Q 029414          102 GSFDYAFVDAD  112 (194)
Q Consensus       102 ~~fD~i~id~~  112 (194)
                      +++|.++..+.
T Consensus        81 ~~id~li~~Ag   91 (247)
T 3lyl_A           81 LAIDILVNNAG   91 (247)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            67999887654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=82.80  E-value=4.9  Score=31.02  Aligned_cols=90  Identities=16%  Similarity=0.147  Sum_probs=54.3

Q ss_pred             CeEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           28 KKTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        28 ~~vLeiG~G~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      .+|.=||+|. |. .+..++.... ..+|+++|.+++.++.+++    .+...  . ...+..+.   .      ....|
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~-~~~V~~~dr~~~~~~~a~~----~G~~~--~-~~~~~~~~---~------~~~aD   96 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINPESISKAVD----LGIID--E-GTTSIAKV---E------DFSPD   96 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHH----TTSCS--E-EESCTTGG---G------GGCCS
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHH----CCCcc--h-hcCCHHHH---h------hccCC
Confidence            6899999763 22 2333333211 2389999999987766543    34321  1 11222220   1      14589


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEE
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAV  134 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv  134 (194)
                      +|++..+.......++.+.+.++++.+++
T Consensus        97 vVilavp~~~~~~vl~~l~~~l~~~~iv~  125 (314)
T 3ggo_A           97 FVMLSSPVRTFREIAKKLSYILSEDATVT  125 (314)
T ss_dssp             EEEECSCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred             EEEEeCCHHHHHHHHHHHhhccCCCcEEE
Confidence            99998776667778888888888876554

>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}

Probab=82.74  E-value=7.6  Score=25.17  Aligned_cols=79  Identities=13%  Similarity=0.074  Sum_probs=51.1

Q ss_pred             CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhccc
Q 029414           51 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLK  128 (194)
Q Consensus        51 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~  128 (194)
                      ..+|..+|-++...+..+..+...+.  .+. ...+..+.+..+...   ...+|+|++|...  .+...+++.+.+. .
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~g~--~v~-~~~~~~~a~~~~~~~---~~~~dlvi~d~~l~~~~g~~~~~~l~~~-~   75 (143)
T 3jte_A            3 LAKILVIDDESTILQNIKFLLEIDGN--EVL-TASSSTEGLRIFTEN---CNSIDVVITDMKMPKLSGMDILREIKKI-T   75 (143)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHHHT---TTTCCEEEEESCCSSSCHHHHHHHHHHH-C
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCc--eEE-EeCCHHHHHHHHHhC---CCCCCEEEEeCCCCCCcHHHHHHHHHHh-C
Confidence            35899999999999999999987763  333 445555555554211   2579999999763  3445666666554 3


Q ss_pred             CC-eEEEEe
Q 029414          129 VG-GIAVYD  136 (194)
Q Consensus       129 ~g-G~lv~~  136 (194)
                      |+ -+|++.
T Consensus        76 ~~~~ii~ls   84 (143)
T 3jte_A           76 PHMAVIILT   84 (143)
T ss_dssp             TTCEEEEEE
T ss_pred             CCCeEEEEE
Confidence            44 344443

>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0

Probab=82.66  E-value=7.1  Score=24.72  Aligned_cols=68  Identities=13%  Similarity=0.154  Sum_probs=47.0

Q ss_pred             CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhc
Q 029414           51 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKL  126 (194)
Q Consensus        51 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~  126 (194)
                      ..+|..+|-++...+..++.+...+.  .+. ...+..+.+..+.     ...+|+|++|..  ..+...+++.+.+.
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlii~D~~l~~~~g~~~~~~l~~~   72 (127)
T 3i42_A            3 LQQALIVEDYQAAAETFKELLEMLGF--QAD-YVMSGTDALHAMS-----TRGYDAVFIDLNLPDTSGLALVKQLRAL   72 (127)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHHTTE--EEE-EESSHHHHHHHHH-----HSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred             cceEEEEcCCHHHHHHHHHHHHHcCC--CEE-EECCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence            34789999999999999999988764  333 3345655555543     256999999975  33445666666554

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=82.65  E-value=11  Score=28.77  Aligned_cols=37  Identities=24%  Similarity=0.143  Sum_probs=22.7

Q ss_pred             CCCeEEEEcccccHHH--HHHHhhCCCCC--EEEEEeCCcchHH
Q 029414           26 NAKKTIEIGVFTGYSL--LLTALTIPEDG--QITAIDVNRETYE   65 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~--~~la~~~~~~~--~v~~iD~~~~~~~   65 (194)
                      +..+|.-+|+|.=..+  ..++..   +.  .|+.+|.+++.++
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~---g~~~~V~l~d~~~~~~~   46 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQR---GIAREIVLEDIAKERVE   46 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT---TCCSEEEEECSSHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC---CCCCEEEEEeCChhHHH
Confidence            3468999999652222  223322   33  8999999986654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=82.62  E-value=12  Score=28.14  Aligned_cols=95  Identities=15%  Similarity=0.119  Sum_probs=56.6

Q ss_pred             CCeEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc---------CCC--------CcEEEEecch
Q 029414           27 AKKTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---------GVD--------HKINFIESEA   87 (194)
Q Consensus        27 ~~~vLeiG~G~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---------~~~--------~~v~~~~~d~   87 (194)
                      -++|.-||+|. |. .+..++..   +.+|+.+|.+++.++.+++.+...         ++.        .+++.. .+.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~---G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~   79 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFH---GFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS-DDL   79 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE-SCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe-CCH
Confidence            35788898864 22 23333332   568999999999888887764321         111        012221 222


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhcccCCeEEEE
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      .+.          -...|+|+......  .....++.+.+.++|+.+++.
T Consensus        80 ~~~----------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s  119 (283)
T 4e12_A           80 AQA----------VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFAT  119 (283)
T ss_dssp             HHH----------TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             HHH----------hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEE
Confidence            221          25689998865432  445667888888888776653

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=82.60  E-value=3.3  Score=27.17  Aligned_cols=93  Identities=18%  Similarity=0.153  Sum_probs=50.4

Q ss_pred             CCeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCc
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS  103 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~  103 (194)
                      .++|+-+|+  |..+..++..+. .+.+|+.+|.+++..+.+++    .    ...++.+|..+  .+...     ....
T Consensus         6 ~~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----~----~~~~~~~d~~~~~~l~~~-----~~~~   70 (144)
T 2hmt_A            6 NKQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----Y----ATHAVIANATEENELLSL-----GIRN   70 (144)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT----T----CSEEEECCTTCHHHHHTT-----TGGG
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----h----CCEEEEeCCCCHHHHHhc-----CCCC
Confidence            457999997  555555544432 24578999998765443321    1    23455666543  22221     0246


Q ss_pred             eeEEEEeCCcc-ccHHHHHHHHhcccCCeEEEE
Q 029414          104 FDYAFVDADKD-NYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       104 fD~i~id~~~~-~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +|+|++..... ..........+.+.+. .+++
T Consensus        71 ~d~vi~~~~~~~~~~~~~~~~~~~~~~~-~ii~  102 (144)
T 2hmt_A           71 FEYVIVAIGANIQASTLTTLLLKELDIP-NIWV  102 (144)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHTTCS-EEEE
T ss_pred             CCEEEECCCCchHHHHHHHHHHHHcCCC-eEEE
Confidence            89998865532 2222333444556675 5544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	194
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	8e-50
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	3e-39
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	1e-28
d2bm8a1	232	c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI	1e-10
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	2e-05
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	5e-05
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	8e-05
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	1e-04
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	4e-04

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  159 bits (402), Expect = 8e-50
 Identities = 110/189 (58%), Positives = 147/189 (77%)

Query: 5   RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
             +M T+ D GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E Y
Sbjct: 38  WNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY 97

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
           E+GLP+IKKAGVDHKI+F E  AL VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+
Sbjct: 98  ELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLI 157

Query: 125 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 184
            L+KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +G
Sbjct: 158 DLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVG 217

Query: 185 DGITICRRI 193
           DGITICRRI
Sbjct: 218 DGITICRRI 226

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 3e-39
 Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 7/188 (3%)

Query: 6   AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 65
                  +  QL+A L RL+ AKK +++G FTGYS L  AL +P DG++   +V+ +  E
Sbjct: 39  GDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPE 98

Query: 66  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK 125
           +G P+ ++A  +HKI+     AL  LD+LL  +   G+FD A VDADK+N   Y+ER ++
Sbjct: 99  LGRPLWRQAEAEHKIDLRLKPALETLDELLA-AGEAGTFDVAVVDADKENCSAYYERCLQ 157

Query: 126 LLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 185
           LL+ GGI      LW G V  P +           + + +LN  +  D RV +S + LGD
Sbjct: 158 LLRPGGILAVLRVLWRGKVLQPPKGDVAA------ECVRNLNERIRRDVRVYISLLPLGD 211

Query: 186 GITICRRI 193
           G+T+  +I
Sbjct: 212 GLTLAFKI 219

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (260), Expect = 1e-28
 Identities = 36/187 (19%), Positives = 72/187 (38%), Gaps = 16/187 (8%)

Query: 5   RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
              M      GQ+M  ++R  +    +E+G + GYS +  A  +    ++  +++N +  
Sbjct: 35  EWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYA 94

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL- 123
            I   ++  AG+  K+  +   +  ++ Q LK   +  + D  F+D  KD Y      L 
Sbjct: 95  AITQQMLNFAGLQDKVTILNGASQDLIPQ-LKKKYDVDTLDMVFLDHWKDRYLPDTLLLE 153

Query: 124 -MKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVA 182
              LL+ G + + DN +  GT                   +   +          L ++ 
Sbjct: 154 KCGLLRKGTVLLADNVIVPGTPDF-------------LAYVRGSSSFECTHYSSYLEYMK 200

Query: 183 LGDGITI 189
           + DG+  
Sbjct: 201 VVDGLEK 207

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 56.3 bits (135), Expect = 1e-10
 Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 12  PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTA---LTIPEDGQITAIDVNRETYEIGL 68
           PD   +   +L  +  +  +E+GV+ G SL         +  D Q+  ID +    +I  
Sbjct: 66  PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-- 123

Query: 69  PIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER-LMKLL 127
                      +  I        D        E +    F+D    N  N  +  +  LL
Sbjct: 124 -------PASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLL 176

Query: 128 KVGG-IAVYDNTLWGG 142
           + G    + D   +  
Sbjct: 177 EEGDYFIIEDMIPYWY 192

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 8/130 (6%)

Query: 12  PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 71
           P    ++  ++ +      +E G  +G   L  +  +   G++ + +V ++ +++     
Sbjct: 84  PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNY 143

Query: 72  KKAGVDHKINFIESEALSVLDQL-----LKYSENEGSFDYAFVDADKDNYCNYHERLMKL 126
           K      K++ +E    +V                 +FD   +D    N           
Sbjct: 144 KHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDM--LNPHVTLPVFYPH 201

Query: 127 LKVGG-IAVY 135
           LK GG  AVY
Sbjct: 202 LKHGGVCAVY 211

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.4 bits (94), Expect = 5e-05
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 9/132 (6%)

Query: 5   RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 64
              +    DA Q++     +    + +E G  +G   L     +   GQ+ + +   +  
Sbjct: 76  GPQVIYPKDAAQIV-HEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHA 134

Query: 65  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 124
           E     +         N+       V+  L      +GS D A +D          + + 
Sbjct: 135 EHARRNVSGCYGQPPDNWRL-----VVSDLADSELPDGSVDRAVLDM--LAPWEVLDAVS 187

Query: 125 KLLKVGG-IAVY 135
           +LL  GG + VY
Sbjct: 188 RLLVAGGVLMVY 199

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.4 bits (91), Expect = 8e-05
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 10/125 (8%)

Query: 10  TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP 69
           TA +   L+  L         +++G  TG    +T        ++ AID N E       
Sbjct: 17  TAMEVRCLIMCLAEPGKNDVAVDVGCGTGG---VTLELAGRVRRVYAIDRNPEAISTTEM 73

Query: 70  IIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 129
            +++ G+   +  +E +A   L ++          D A V             +   LK 
Sbjct: 74  NLQRHGLGDNVTLMEGDAPEALCKI-------PDIDIAVVGGSGGELQEILRIIKDKLKP 126

Query: 130 GGIAV 134
           GG  +
Sbjct: 127 GGRII 131

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 18/154 (11%), Positives = 46/154 (29%), Gaps = 6/154 (3%)

Query: 16  QLMAMLLRLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 73
             M  L    ++   + +E+G     +   + +      +   I+ N   ++       +
Sbjct: 41  PYMHALAAAASSKGGRVLEVGFGMAIAA--SKVQEAPIDEHWIIECNDGVFQRLRDWAPR 98

Query: 74  AGVDHKINFIESEALSVLDQLLKYSEN-EGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 132
                       E ++       +      ++  +        +        +LLK GG+
Sbjct: 99  QTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV 158

Query: 133 AVYDNTLWGGTVAVPEEQ-VPDHFRGSSRQAILD 165
             Y N    G +   +   +   F  +   A+L+
Sbjct: 159 LTYCNLTSWGELMKSKYSDITIMFEETQVPALLE 192

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 11/123 (8%)

Query: 12  PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 71
            DA   + M   L      +E+GV +G         +   G +T ++ + +  +  +  +
Sbjct: 72  IDASY-IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL 130

Query: 72  KKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 131
            +      +    S+    +              Y  V AD  +  N+ +++  ++K G 
Sbjct: 131 SEFYDIGNVRTSRSDIADFISD----------QMYDAVIADIPDPWNHVQKIASMMKPGS 180

Query: 132 IAV 134
           +A 
Sbjct: 181 VAT 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	100.0
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	100.0
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.97
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.85
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.79
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.76
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.76
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.76
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.75
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.74
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.74
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.72
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.72
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.72
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.7
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.69
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.69
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.69
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.68
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.68
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.67
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.67
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.67
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.67
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.66
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.66
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.66
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.66
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.66
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.65
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.64
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.64
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.64
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.64
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.63
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.61
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.61
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.61
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.61
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.61
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.61
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.59
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.59
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.59
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.59
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.58
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.58
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.58
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.58
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.57
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.56
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.55
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.54
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.51
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.5
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.49
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.48
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.47
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.46
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.45
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.44
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.44
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	99.43
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.43
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.43
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.42
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.41
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.4
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.39
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.39
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.38
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.36
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.36
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.33
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.33
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.31
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.28
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.27
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.26
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.23
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.19
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	99.14
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.06
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	99.04
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.95
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.93
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.86
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.85
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.82
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.79
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.77
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.75
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.75
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.73
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.7
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.55
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.46
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.39
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.13
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.96
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.92
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.9
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.88
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.8
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.78
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.76
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.74
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.68
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.56
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.55
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.54
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.48
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.4
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.37
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.2
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.18
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.05
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.03
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.97
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.95
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.84
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.53
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.45
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.42
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.35
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.32
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.29
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.23
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.21
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.04
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.92
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	95.81
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.77
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	95.68
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.57
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.56
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.55
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	95.5
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.5
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.43
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.34
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.3
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.2
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.98
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	94.76
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.89
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	93.84
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	93.7
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.56
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	92.98
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	92.88
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.54
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	92.54
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	92.45
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	92.33
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.07
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	92.04
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.81
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	91.5
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	91.44
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	91.43
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.39
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	91.28
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	90.87
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	90.73
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	90.73
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.51
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	90.26
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	89.83
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	89.56
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	89.27
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	89.23
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	89.07
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	88.79
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	88.1
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	88.06
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	87.96
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	87.87
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	87.84
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	87.54
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	87.25
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	87.14
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	86.8
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	86.76
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.74
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	86.71
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	86.66
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	86.6
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	86.35
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	86.31
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	86.12
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.84
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	85.68
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	85.5
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	85.48
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	85.23
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	85.2
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	85.04
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	84.98
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	84.94
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	84.91
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	84.88
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	84.79
d1a2oa1	140	Methylesterase CheB, N-terminal domain {Salmonella	84.56
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	84.47
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	84.4
d1i3ca_	144	Response regulator for cyanobacterial phytochrome	84.25
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	84.09
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.92
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	83.24
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	83.06
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	83.02
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	82.42
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	82.23
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	82.21
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	81.82
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	81.62
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	81.52
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	81.36
d1a04a2	138	Nitrate/nitrite response regulator (NarL), receive	81.06
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	80.95
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	80.81
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	80.52
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	80.23
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	80.19
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	80.01

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=5.4e-40  Score=246.36  Aligned_cols=189  Identities=59%  Similarity=1.010  Sum_probs=170.5

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      ++.|+++++++++|..+++..++++|||+||++|++++++|.+++++++++++|.+++..+.|+++++..++.++++++.
T Consensus        38 ~~~m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~  117 (227)
T d1susa1          38 WNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE  117 (227)
T ss_dssp             TGGGSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeee
Confidence            46789999999999999999999999999999999999999999888999999999999999999999999998999999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCC-cccchHHHH
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDH-FRGSSRQAI  163 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~  163 (194)
                      +++.+.++++.......++||+||+|+++..+..+++.++++|+|||+|+++|++|+|.+.++....... .+. ....+
T Consensus       118 g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~-~~~~i  196 (227)
T d1susa1         118 GPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRY-YRDFV  196 (227)
T ss_dssp             SCHHHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHH-HHHHH
T ss_pred             hHHHHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHH-HHHHH
Confidence            9999999887543222468999999999999999999999999999999999999999998876443222 233 55679


Q ss_pred             HHHHHHhhcCCCeEEEeeecCCeeEEEEEcC
Q 029414          164 LDLNRSLADDPRVQLSHVALGDGITICRRIF  194 (194)
Q Consensus       164 ~~~~~~l~~~~~~~~~~~p~~~G~~i~~~~~  194 (194)
                      ++|++++.++|+|+++++|++||++|+||.|
T Consensus       197 ~~~n~~i~~d~r~~~~llPigDGl~i~~K~~  227 (227)
T d1susa1         197 LELNKALAVDPRIEICMLPVGDGITICRRIK  227 (227)
T ss_dssp             HHHHHHHHHCTTBCCEEECSTTCEEEECBCC
T ss_pred             HHHHHHHhcCCCEEEEEeecCCeeEEEEECC
Confidence            9999999999999999999999999999976

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-38  Score=236.68  Aligned_cols=181  Identities=39%  Similarity=0.634  Sum_probs=166.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +.|+++++++++|..+++..++++|||+|||+|++++++|.+++++++++++|.+++..+.|+++++.+++.++++++.|
T Consensus        39 ~~~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~G  118 (219)
T d2avda1          39 GDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK  118 (219)
T ss_dssp             GGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred             CCcccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEe
Confidence            56889999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHH
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  165 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  165 (194)
                      |+.+.++++... ...++||+||+|+.+..+..+++.++++|+|||+|+++|++|+|.+.++...+      +.+.++++
T Consensus       119 da~e~l~~~~~~-~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d------~~~~~ir~  191 (219)
T d2avda1         119 PALETLDELLAA-GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGD------VAAECVRN  191 (219)
T ss_dssp             CHHHHHHHHHHT-TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTC------HHHHHHHH
T ss_pred             ehhhcchhhhhh-cccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCC------HHHHHHHH
Confidence            999988776433 22468999999999999999999999999999999999999999988765331      16778999


Q ss_pred             HHHHhhcCCCeEEEeeecCCeeEEEEEc
Q 029414          166 LNRSLADDPRVQLSHVALGDGITICRRI  193 (194)
Q Consensus       166 ~~~~l~~~~~~~~~~~p~~~G~~i~~~~  193 (194)
                      |++.+.++|+|+++++|+++|++|++|.
T Consensus       192 ~~~~i~~d~r~~~~llPigdGl~ia~Kl  219 (219)
T d2avda1         192 LNERIRRDVRVYISLLPLGDGLTLAFKI  219 (219)
T ss_dssp             HHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHhCCCEEEEEeecCCeeEEEEeC
Confidence            9999999999999999999999999984

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=9.4e-30  Score=189.29  Aligned_cols=167  Identities=21%  Similarity=0.331  Sum_probs=144.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      ..|+++++.+++|..+++..+|++|||+|||+|++|+++|.+++++++++++|.+++..+.|+++++..++.++++++.|
T Consensus        36 ~~m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~G  115 (214)
T d2cl5a1          36 WAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNG  115 (214)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred             CccccCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeec
Confidence            45789999999999999999999999999999999999999998789999999999999999999999999889999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccccHHH--HHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHH
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY--HERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAI  163 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~--~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  163 (194)
                      |+.+.++.+... ...++||+||+|+.+..+...  +..++++|+|||+|+++|++|+|                    .
T Consensus       116 d~~e~l~~l~~~-~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g--------------------~  174 (214)
T d2cl5a1         116 ASQDLIPQLKKK-YDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG--------------------T  174 (214)
T ss_dssp             CHHHHGGGHHHH-SCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCC--------------------C
T ss_pred             cccccccchhhc-ccccccceeeecccccccccHHHHHHHhCccCCCcEEEEeCcCCCC--------------------C
Confidence            999987776432 123679999999988776553  56677899999999999999977                    3


Q ss_pred             HHHHHHhhcCCCeEEEe-------eecCCeeEEEEEc
Q 029414          164 LDLNRSLADDPRVQLSH-------VALGDGITICRRI  193 (194)
Q Consensus       164 ~~~~~~l~~~~~~~~~~-------~p~~~G~~i~~~~  193 (194)
                      .++.+++++.+++....       +|+++|+.++..+
T Consensus       175 ~~~~~~vr~~~~~~~~~~~~~~~~~~~~dgl~~s~~~  211 (214)
T d2cl5a1         175 PDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  211 (214)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEECTTSSSEEEEEEEEEC
T ss_pred             hHHHHHHhccCceeehhhhhcceecccCCceEEEEec
Confidence            55667788888887665       6889999998764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.85  E-value=2.3e-20  Score=135.46  Aligned_cols=121  Identities=21%  Similarity=0.206  Sum_probs=106.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .+..+...++-..+...++.+|||+|||+|..++.+|..   ..+|+++|+++++++.|+++++.+++.++++++++|+.
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~   92 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP   92 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh
Confidence            356677777777778888999999999999999999975   45999999999999999999999999889999999998


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +....       .+.||+|+++........+++.+.+.|||||.+++....
T Consensus        93 ~~~~~-------~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          93 EALCK-------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             HHHTT-------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             hcccc-------cCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeec
Confidence            77544       478999999988888889999999999999999986543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.1e-19  Score=135.57  Aligned_cols=122  Identities=20%  Similarity=0.253  Sum_probs=102.1

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   90 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~   90 (194)
                      +++....|...+...++++|||||||+|..+..+++..  +.+|+++|+++.+++.++++....++++++++..+|+.+.
T Consensus        18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            44455555666667778999999999999999999864  4799999999999999999999999988999999998764


Q ss_pred             HHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414           91 LDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      .+        .++||+|++-..   ..+...+++++.+.|||||.+++.+..+..
T Consensus        96 ~~--------~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~  142 (245)
T d1nkva_          96 VA--------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQ  142 (245)
T ss_dssp             CC--------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETT
T ss_pred             cc--------cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccC
Confidence            21        478999998755   457789999999999999999998765544

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=1.5e-18  Score=129.90  Aligned_cols=115  Identities=17%  Similarity=0.242  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH
Q 029414           13 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   92 (194)
Q Consensus        13 ~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~   92 (194)
                      ....+|-..+...++.+|||+|||+|..+..++...   .+++++|+|+.+++.|++++...+.+ ++.++++|+.+. +
T Consensus         3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~-~   77 (234)
T d1xxla_           3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P   77 (234)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C
T ss_pred             hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccc-cccccccccccc-c
Confidence            345677778888899999999999999999999864   58999999999999999999988875 899999998763 2


Q ss_pred             HHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecc
Q 029414           93 QLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        93 ~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                       +     .+++||+|++...   .++...+++++.+.|||||++++.+.
T Consensus        78 -~-----~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~  120 (234)
T d1xxla_          78 -F-----PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  120 (234)
T ss_dssp             -S-----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -c-----cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence             1     2578999998765   35678999999999999999988543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=1.1e-18  Score=129.05  Aligned_cols=117  Identities=21%  Similarity=0.361  Sum_probs=97.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .++|...+.+-..+...++.+|||||||+|+.+..+|+.+++.++|+++|++++.++.|+++++..+.. ++.++++|..
T Consensus        58 i~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~  136 (213)
T d1dl5a1          58 SSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGY  136 (213)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGG
T ss_pred             eccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchH
Confidence            355666666667777888999999999999999999998877899999999999999999999998876 8889999987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +..+.       .++||.|++.+..+...   +.+.+.|||||.|++.
T Consensus       137 ~~~~~-------~~~fD~I~~~~~~~~~p---~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         137 YGVPE-------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             GCCGG-------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEE
T ss_pred             Hcccc-------ccchhhhhhhccHHHhH---HHHHHhcCCCcEEEEE
Confidence            65443       37899999988755543   3466889999999984

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.76  E-value=1.6e-18  Score=129.12  Aligned_cols=108  Identities=13%  Similarity=0.235  Sum_probs=91.0

Q ss_pred             HHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           21 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        21 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ++...+..+|||||||+|.++..+++.   +.+++++|+++++++.|++++...+.+ +++++++|+.+. + +     .
T Consensus        10 ~~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~~l-~-~-----~   78 (231)
T d1vl5a_          10 IAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-F-----T   78 (231)
T ss_dssp             HHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-S-----C
T ss_pred             hcCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhcccccccc-cccccccccccc-c-c-----c
Confidence            355667899999999999999999986   459999999999999999999998876 899999998764 2 1     1


Q ss_pred             CCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          101 EGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       101 ~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      .++||+|++...   ..+...+++++.+.|+|||++++.+..
T Consensus        79 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~  120 (231)
T d1vl5a_          79 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  120 (231)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            478999998865   457789999999999999999986543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=4.4e-18  Score=129.03  Aligned_cols=120  Identities=16%  Similarity=0.171  Sum_probs=101.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc--CCCCcEEEEec
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVDHKINFIES   85 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~~~v~~~~~   85 (194)
                      ..+-+.-..++-..+...++.+|||+|||+|..|.+||+.+.++++|+++|.++++++.|+++++..  ....++++.++
T Consensus        78 qiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~  157 (264)
T d1i9ga_          78 QVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS  157 (264)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS
T ss_pred             cccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec
Confidence            3455666777778888889999999999999999999999877999999999999999999999875  34469999999


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |..+.  .+     .++.||.||+|.  ++...+++.+.+.|||||.+++.
T Consensus       158 d~~~~--~~-----~~~~fDaV~ldl--p~P~~~l~~~~~~LkpGG~lv~~  199 (264)
T d1i9ga_         158 DLADS--EL-----PDGSVDRAVLDM--LAPWEVLDAVSRLLVAGGVLMVY  199 (264)
T ss_dssp             CGGGC--CC-----CTTCEEEEEEES--SCGGGGHHHHHHHEEEEEEEEEE
T ss_pred             ccccc--cc-----cCCCcceEEEec--CCHHHHHHHHHhccCCCCEEEEE
Confidence            98663  11     247899999986  34457789999999999999985

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=1.5e-16  Score=120.18  Aligned_cols=113  Identities=19%  Similarity=0.261  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHc-CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHH
Q 029414           14 AGQLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   92 (194)
Q Consensus        14 ~~~~l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~   92 (194)
                      +.-+|..+.... ++++|||+|||+|..++.+++.   +.+|+++|+++.+++.|+++++.++++  ++++++|..+..+
T Consensus       107 T~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~~~  181 (254)
T d2nxca1         107 TRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP  181 (254)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG
T ss_pred             hhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccccc
Confidence            344555555433 5789999999999999988874   569999999999999999999999874  5788888766432


Q ss_pred             HHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           93 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        93 ~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                              .++||+|+++........+++.+.+.|||||++++++.+
T Consensus       182 --------~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         182 --------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             --------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             --------ccccchhhhccccccHHHHHHHHHHhcCCCcEEEEEecc
Confidence                    378999999877666778888999999999999997654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=2.7e-18  Score=129.33  Aligned_cols=108  Identities=14%  Similarity=0.220  Sum_probs=91.2

Q ss_pred             HHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcC
Q 029414           19 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   98 (194)
Q Consensus        19 ~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~   98 (194)
                      -..+...++.+|||+|||+|..+.++|+.+.+.++|+++|.++++++.|++++++++...++++.++|..+.++      
T Consensus        78 i~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~------  151 (250)
T d1yb2a1          78 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS------  151 (250)
T ss_dssp             ---CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC------
T ss_pred             HHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc------
Confidence            34445667899999999999999999998776899999999999999999999988767799999999876432      


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                        ++.||.|++|..  +...+++.+.+.|||||++++.
T Consensus       152 --~~~fD~V~ld~p--~p~~~l~~~~~~LKpGG~lv~~  185 (250)
T d1yb2a1         152 --DQMYDAVIADIP--DPWNHVQKIASMMKPGSVATFY  185 (250)
T ss_dssp             --SCCEEEEEECCS--CGGGSHHHHHHTEEEEEEEEEE
T ss_pred             --cceeeeeeecCC--chHHHHHHHHHhcCCCceEEEE
Confidence              368999999864  4446789999999999999984

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.5e-18  Score=124.78  Aligned_cols=119  Identities=19%  Similarity=0.243  Sum_probs=94.7

Q ss_pred             CCCCHHHHHHHHHHH--HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC----CcEE
Q 029414            8 MGTAPDAGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD----HKIN   81 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~v~   81 (194)
                      ..++|...+.+-.++  ...++.+|||||||+|+.+..+|+...+.++|+++|+++++++.|++++++.++.    .++.
T Consensus        56 ~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~  135 (224)
T d1i1na_          56 TISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQ  135 (224)
T ss_dssp             EECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEE
T ss_pred             hhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceE
Confidence            345566655555554  4567789999999999999999998776899999999999999999999876642    4789


Q ss_pred             EEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           82 FIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        82 ~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +..+|.....+.       .++||.|++.+......   +.+.+.|||||.||+-
T Consensus       136 ~~~gD~~~~~~~-------~~~fD~I~~~~~~~~ip---~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         136 LVVGDGRMGYAE-------EAPYDAIHVGAAAPVVP---QALIDQLKPGGRLILP  180 (224)
T ss_dssp             EEESCGGGCCGG-------GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             EEEeecccccch-------hhhhhhhhhhcchhhcC---HHHHhhcCCCcEEEEE
Confidence            999998765433       37899999998755432   4567899999999983

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=9.4e-18  Score=127.69  Aligned_cols=118  Identities=20%  Similarity=0.277  Sum_probs=101.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .+-|--..++...+...++.+|||+|||+|..+.++|+.+.++++|+++|.++++++.|+++++..++.+++.+..+|..
T Consensus        86 iiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~  165 (266)
T d1o54a_          86 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS  165 (266)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred             ccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc
Confidence            44556667777888888999999999999999999999987789999999999999999999999998889999999874


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ...        ....||.|++|.  ++...+++.+.+.|||||.+++.
T Consensus       166 ~~~--------~~~~~D~V~~d~--p~p~~~l~~~~~~LKpGG~lv~~  203 (266)
T d1o54a_         166 EGF--------DEKDVDALFLDV--PDPWNYIDKCWEALKGGGRFATV  203 (266)
T ss_dssp             GCC--------SCCSEEEEEECC--SCGGGTHHHHHHHEEEEEEEEEE
T ss_pred             ccc--------cccceeeeEecC--CCHHHHHHHHHhhcCCCCEEEEE
Confidence            432        146799999986  34557789999999999999985

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.72  E-value=8.4e-18  Score=129.18  Aligned_cols=109  Identities=13%  Similarity=0.203  Sum_probs=93.0

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||||||+|..+..+++..  +.+|+++|+++.+++.|+++....++.+++++..+|+.+. + +     ..++
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~-~-----~~~s  135 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P-C-----EDNS  135 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S-S-----CTTC
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccc-c-c-----cccc
Confidence            3467899999999999999999864  5699999999999999999999999988999999999764 1 1     2478


Q ss_pred             eeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414          104 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus       104 fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      ||+|++...   .++...+++.+.+.|||||.+++.+....
T Consensus       136 fD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~  176 (282)
T d2o57a1         136 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE  176 (282)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             cchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecC
Confidence            999998754   45678899999999999999999775543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.70  E-value=9.4e-17  Score=116.85  Aligned_cols=110  Identities=15%  Similarity=0.169  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecchHHHHHH
Q 029414           15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQ   93 (194)
Q Consensus        15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~   93 (194)
                      .++|...+...++++|||+|||+|..++.++...+   +++++|+++.+++.++++++.+++. .++++..+|..+..+ 
T Consensus        41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~-  116 (194)
T d1dusa_          41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK-  116 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT-
T ss_pred             HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc-
Confidence            34444444566789999999999999999998654   8999999999999999999998876 469999999865322 


Q ss_pred             HhhcCCCCCceeEEEEeCCcc----ccHHHHHHHHhcccCCeEEEE
Q 029414           94 LLKYSENEGSFDYAFVDADKD----NYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~~~----~~~~~~~~~~~~L~~gG~lv~  135 (194)
                             .++||+|+++.+..    ....+++.+.+.|+|||.+++
T Consensus       117 -------~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         117 -------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             -------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -------cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence                   47899999987622    235678899999999999876

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.69  E-value=1.1e-16  Score=112.09  Aligned_cols=113  Identities=19%  Similarity=0.242  Sum_probs=91.9

Q ss_pred             HHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHh
Q 029414           16 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   95 (194)
Q Consensus        16 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~   95 (194)
                      +++..+....++++|||+|||+|..++..+...  ..+|+++|.++++++.++++++..+..++++++++|+.+.+... 
T Consensus         4 ~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rg--a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~-   80 (152)
T d2esra1           4 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL-   80 (152)
T ss_dssp             HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB-
T ss_pred             HHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhC--cceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc-
Confidence            344455445578999999999999999887753  25999999999999999999999998888999999998877653 


Q ss_pred             hcCCCCCceeEEEEeCC--ccccHHHHHHHH--hcccCCeEEEEe
Q 029414           96 KYSENEGSFDYAFVDAD--KDNYCNYHERLM--KLLKVGGIAVYD  136 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~--~~~~~~~~~~~~--~~L~~gG~lv~~  136 (194)
                           .++||+||+|++  .......++.+.  +.|+|||+|+++
T Consensus        81 -----~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          81 -----TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             -----CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             -----ccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence                 578999999986  233455566554  579999999986

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.2e-17  Score=127.75  Aligned_cols=120  Identities=16%  Similarity=0.225  Sum_probs=95.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc----------CCCCc
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA----------GVDHK   79 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----------~~~~~   79 (194)
                      +-+.-..++-.++...++.+|||+|||+|+.+..||+.+.++++|+++|+++++++.|+++++..          +..+|
T Consensus        82 iypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~n  161 (324)
T d2b25a1          82 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  161 (324)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             cccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            34445566666778889999999999999999999999877999999999999999999999864          34568


Q ss_pred             EEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           80 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        80 v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +.+.++|..+....+.     ...||.||+|.+  +...+++++.+.|||||.+++.
T Consensus       162 v~~~~~di~~~~~~~~-----~~~fD~V~LD~p--~P~~~l~~~~~~LKpGG~lv~~  211 (324)
T d2b25a1         162 VDFIHKDISGATEDIK-----SLTFDAVALDML--NPHVTLPVFYPHLKHGGVCAVY  211 (324)
T ss_dssp             EEEEESCTTCCC------------EEEEEECSS--STTTTHHHHGGGEEEEEEEEEE
T ss_pred             eeEEecchhhcccccC-----CCCcceEeecCc--CHHHHHHHHHHhccCCCEEEEE
Confidence            9999999866433321     367999999864  3345789999999999999984

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.69  E-value=2.7e-17  Score=126.32  Aligned_cols=108  Identities=19%  Similarity=0.317  Sum_probs=92.2

Q ss_pred             HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           23 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      +..++.+|||+|||+|..+..++..++.+.+|+++|+++.+++.|++++...+.  ++++.++|+.+. + +      .+
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~-~-~------~~   93 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI-E-L------ND   93 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTC-C-C------SS
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccc-c-c------cC
Confidence            356789999999999999999999887678999999999999999999987664  799999998653 1 1      36


Q ss_pred             ceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          103 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       103 ~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      +||+|++...   .++...+++.+.+.|||||.+++.+..|
T Consensus        94 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  134 (281)
T d2gh1a1          94 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW  134 (281)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             CceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCc
Confidence            7999999875   4567889999999999999999877654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.68  E-value=6.1e-17  Score=119.33  Aligned_cols=117  Identities=20%  Similarity=0.300  Sum_probs=98.5

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      ...++|...+.+-..+...++.+|||||||+|+.+..+|..+  +++|+++|.+++..+.+++++...+.. |+.++++|
T Consensus        59 ~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~~-nv~~~~gd  135 (215)
T d1jg1a_          59 QTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGD  135 (215)
T ss_dssp             CEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESC
T ss_pred             hhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCCc-eeEEEECc
Confidence            556778887777788888899999999999999999999875  468999999999999999999999986 99999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..+..+.       .++||.|++.+.......   .+...|+|||.+++-
T Consensus       136 ~~~g~~~-------~~pfD~Iiv~~a~~~ip~---~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         136 GSKGFPP-------KAPYDVIIVTAGAPKIPE---PLIEQLKIGGKLIIP  175 (215)
T ss_dssp             GGGCCGG-------GCCEEEEEECSBBSSCCH---HHHHTEEEEEEEEEE
T ss_pred             cccCCcc-------cCcceeEEeecccccCCH---HHHHhcCCCCEEEEE
Confidence            8775444       478999999887544333   356789999999983

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.68  E-value=3.3e-16  Score=112.71  Aligned_cols=125  Identities=14%  Similarity=0.130  Sum_probs=103.5

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      +++++...+++...+.....+.+|||++||+|..++..+...  ..+|+++|.++++++.++++++..+..++++++++|
T Consensus        22 RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srG--a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D   99 (182)
T d2fhpa1          22 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMD   99 (182)
T ss_dssp             CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred             CcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecc--hhHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Confidence            566667777777776666688999999999999999888763  358999999999999999999999888899999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHH--hcccCCeEEEEe
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLM--KLLKVGGIAVYD  136 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~--~~L~~gG~lv~~  136 (194)
                      +.+.+..+..+   ..+||+||+|++  ...+...++.+.  ..|+++|+|+++
T Consensus       100 ~~~~l~~~~~~---~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         100 ANRALEQFYEE---KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             HHHHHHHHHHT---TCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             chhhhhhhccc---CCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            99988776433   468999999997  345567777775  469999999985

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.67  E-value=7.5e-17  Score=119.54  Aligned_cols=114  Identities=24%  Similarity=0.334  Sum_probs=92.7

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      ...+.|.....|-..+...++.+|||||||+|+.|..+|...   ++|+++|.+++..+.|++++...   .|+.++.+|
T Consensus        51 ~~~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d  124 (224)
T d1vbfa_          51 INTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYY---NNIKLILGD  124 (224)
T ss_dssp             EEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTC---SSEEEEESC
T ss_pred             CceehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcc---cccccccCc
Confidence            345677777777777778899999999999999999999874   59999999999999999987643   489999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .....+.       .++||.|++.+..+...   +.++++|+|||.||+-
T Consensus       125 ~~~g~~~-------~~pfD~Iiv~~a~~~ip---~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         125 GTLGYEE-------EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILP  164 (224)
T ss_dssp             GGGCCGG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             hhhcchh-------hhhHHHHHhhcchhhhh---HHHHHhcCCCCEEEEE
Confidence            8664443       37899999987655443   3466899999999983

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.67  E-value=5.2e-16  Score=115.23  Aligned_cols=106  Identities=12%  Similarity=0.150  Sum_probs=88.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      .+..+|||+|||+|..+..+++... ++.+|+++|+|+++++.|++++...+...++.+..+|..+.         ..+.
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~---------~~~~  108 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV---------EIKN  108 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC---------CCCS
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc---------cccc
Confidence            3567999999999999999998753 47899999999999999999999888777888898887543         1367


Q ss_pred             eeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          104 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       104 fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +|+|++...     .++...+++.+.+.|+|||.+++.+..
T Consensus       109 ~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         109 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             EEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence            899887644     356778999999999999999997654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=5.8e-16  Score=121.03  Aligned_cols=110  Identities=23%  Similarity=0.319  Sum_probs=93.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++++|||+|||+|..++.+|...  ..+|+++|+++.+++.+++++..+++.++++++++|+.+.+..+...   ..+|
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~---~~~f  218 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK---GEKF  218 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT---TCCE
T ss_pred             CCCCeeecccCcccchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhc---cCCC
Confidence            357899999999999999998763  35899999999999999999999999889999999999887665433   5789


Q ss_pred             eEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEeccc
Q 029414          105 DYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       105 D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      |+|++|++.            ..+..++..+.++|+|||+|++....
T Consensus       219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            999999872            23566788889999999999996543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=7.5e-17  Score=121.41  Aligned_cols=99  Identities=18%  Similarity=0.346  Sum_probs=83.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++++|||+|||+|..+..+++.   +.+++++|+++.+++.|++++...+.  ++++.++|+.+..  +      .++||
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~--~------~~~fD  107 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA--F------KNEFD  107 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC--C------CSCEE
T ss_pred             CCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc--cchheehhhhhcc--c------ccccc
Confidence            4578999999999999999985   56999999999999999999988765  6999999986641  1      36899


Q ss_pred             EEEEeCC------ccccHHHHHHHHhcccCCeEEEEec
Q 029414          106 YAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       106 ~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +|++-..      .++...+++.+.+.|+|||+++++-
T Consensus       108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9998643      2456688999999999999999864

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.66  E-value=1.8e-16  Score=115.54  Aligned_cols=106  Identities=17%  Similarity=0.213  Sum_probs=88.5

Q ss_pred             HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      +...++.+|||+|||+|..+.+|++.   +.+|+++|+++.+++.++++....+++ ++++...|..+...        .
T Consensus        26 ~~~~~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~--------~   93 (198)
T d2i6ga1          26 AKVVAPGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF--------D   93 (198)
T ss_dssp             HTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC--------C
T ss_pred             cccCCCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc--------c
Confidence            34557789999999999999999986   569999999999999999999998886 89999988765421        4


Q ss_pred             CceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          102 GSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       102 ~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ++||+|++...     .....++++.+.+.|+|||++++....
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            78999998765     234568899999999999999986443

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9.5e-17  Score=119.75  Aligned_cols=110  Identities=18%  Similarity=0.183  Sum_probs=88.9

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++++|||||||+|.++..+++..  ..+++++|+++.+++.|++++...+  .++.++.+++......+     ..++|
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~f  122 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL-----PDGHF  122 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS-----CTTCE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccccccc-----ccccc
Confidence            356799999999999999999863  3589999999999999999987654  46888889987765554     24789


Q ss_pred             eEEEEeCC--------ccccHHHHHHHHhcccCCeEEEEeccccccc
Q 029414          105 DYAFVDAD--------KDNYCNYHERLMKLLKVGGIAVYDNTLWGGT  143 (194)
Q Consensus       105 D~i~id~~--------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  143 (194)
                      |.|++|..        ..+...+++.+.++|||||++++.+....+.
T Consensus       123 D~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~  169 (229)
T d1zx0a1         123 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGE  169 (229)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHH
T ss_pred             cceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcch
Confidence            99999865        2345678899999999999999977655443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.66  E-value=1.4e-16  Score=119.87  Aligned_cols=108  Identities=16%  Similarity=0.180  Sum_probs=86.1

Q ss_pred             HHHHHHHHH--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHH
Q 029414           16 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   93 (194)
Q Consensus        16 ~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~   93 (194)
                      .++..++..  .++++|||+|||+|..+..+++.   +.+++|+|+|+.+++.|++++...+.  +++++++|..+..  
T Consensus        25 ~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~--   97 (246)
T d1y8ca_          25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN--   97 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC--
T ss_pred             HHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc--cceeeccchhhhc--
Confidence            344444433  34679999999999999999986   45999999999999999999988775  6899999987641  


Q ss_pred             HhhcCCCCCceeEEEEeCC-------ccccHHHHHHHHhcccCCeEEEEe
Q 029414           94 LLKYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +      .++||+|++-..       ..+...+++.+.++|+|||.++++
T Consensus        98 ~------~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          98 I------NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             C------SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             c------cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            1      368999997532       235567899999999999999974

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=5.6e-16  Score=118.72  Aligned_cols=116  Identities=9%  Similarity=0.137  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHH---HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           12 PDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        12 ~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      ..+...+..++.   ..++.+|||||||.|..+.++++..  +.+|+++|+|++.++.+++++...++..++.+...|..
T Consensus        35 ~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~  112 (280)
T d2fk8a1          35 EAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE  112 (280)
T ss_dssp             HHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhh
Confidence            334445666665   3467899999999999999998874  46999999999999999999999999888888888865


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +.          .++||.|++-..     ..++..+|+.+.+.|||||.++++.+.
T Consensus       113 ~~----------~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         113 DF----------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             GC----------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             hh----------ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence            43          478999987754     345688999999999999999997644

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.66  E-value=6.8e-16  Score=112.91  Aligned_cols=104  Identities=14%  Similarity=0.290  Sum_probs=88.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      +...|||||||+|.++..+|+..| +..++++|+++..+..+.+++.+.++. |+.++.+|+......+     ..+++|
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~-----~~~~~d  101 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF-----EPGEVK  101 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC-----CTTSCC
T ss_pred             CCceEEEEEecCcHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHhcc-Cchhcccchhhhhccc-----Cchhhh
Confidence            445799999999999999999987 899999999999999999999999986 8999999998776544     257899


Q ss_pred             EEEEeCCcc-----c------cHHHHHHHHhcccCCeEEEEe
Q 029414          106 YAFVDADKD-----N------YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       106 ~i~id~~~~-----~------~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .|++..+.+     .      ...+++.+.+.|||||.|.+.
T Consensus       102 ~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         102 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             ccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            998775421     1      257999999999999999874

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=1.1e-15  Score=119.17  Aligned_cols=111  Identities=23%  Similarity=0.332  Sum_probs=93.0

Q ss_pred             HHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           21 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        21 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      +....++++|||++||+|..++.+|..   ..+|+++|.++.+++.++++++.+++. +++++++|+.+.+..+...   
T Consensus       140 ~~~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~---  212 (318)
T d1wxxa2         140 YMERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKE---  212 (318)
T ss_dssp             HGGGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHT---
T ss_pred             HHHHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhh---
Confidence            344557889999999999999998875   569999999999999999999999986 8999999999987765433   


Q ss_pred             CCceeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEecc
Q 029414          101 EGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       101 ~~~fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .++||+|++|++.            ..+..++..+.++|+|||+|++...
T Consensus       213 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         213 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            5789999999761            2345677888999999999999654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.64  E-value=4.5e-16  Score=114.99  Aligned_cols=103  Identities=15%  Similarity=0.165  Sum_probs=84.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .+..+|||||||+|..+..+++.   +.+|+++|+|+++++.|++++...+.  ++.++.+|+.+. +.      ..++|
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l-~~------~~~~f  103 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKL-SF------EDKTF  103 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSC-CS------CTTCE
T ss_pred             CCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc--cccccccccccc-cc------cCcCc
Confidence            45679999999999999999985   56999999999999999999987763  578888888664 11      24789


Q ss_pred             eEEEEeCCc-----cccHHHHHHHHhcccCCeEEEEeccc
Q 029414          105 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       105 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      |+|++....     .+...+++.+.++|||||.+++....
T Consensus       104 D~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            999987652     24567899999999999999887543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=1.5e-15  Score=116.82  Aligned_cols=120  Identities=9%  Similarity=0.089  Sum_probs=98.2

Q ss_pred             CCCHHHHHHHHHHHH---HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            9 GTAPDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +.+......+..++.   ..++.+|||||||.|..+.++|...  +.+++++++|++.++.+++++...++..++.+...
T Consensus        41 tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~  118 (291)
T d1kpia_          41 TLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ  118 (291)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEEC
T ss_pred             CHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhhhhhh
Confidence            344445555666655   4467899999999999999999875  47999999999999999999999999989999988


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEecccc
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      |....          .++||.|+.-...            .++..+++.+.+.|||||.++++.+..
T Consensus       119 d~~~~----------~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~  175 (291)
T d1kpia_         119 GWEEF----------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  175 (291)
T ss_dssp             CGGGC----------CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred             ccccc----------ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence            86421          4789999976542            346899999999999999999987653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.64  E-value=2.7e-16  Score=113.82  Aligned_cols=122  Identities=10%  Similarity=0.010  Sum_probs=93.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC-----------C
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV-----------D   77 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----------~   77 (194)
                      .+++...+++..+ ...++.+|||+|||+|..+.+||+.   +.+|+++|+|+.+++.|+++....+.           .
T Consensus         4 ~~~~~~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~   79 (201)
T d1pjza_           4 EVNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAA   79 (201)
T ss_dssp             SSTHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEEC
T ss_pred             hHHHHHHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccc
Confidence            4556666666665 3667889999999999999999986   67999999999999999998855432           1


Q ss_pred             CcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414           78 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        78 ~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ..++++.+|..+..+..      ...||+|+....     ......+++.+.+.|||||.+++....+
T Consensus        80 ~~~~~~~~d~~~l~~~~------~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~  141 (201)
T d1pjza_          80 PGIEIWCGDFFALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY  141 (201)
T ss_dssp             SSSEEEEECCSSSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred             cccceeccccccccccc------ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence            24577888876643332      267999988755     2345678899999999999987754443

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=6.7e-16  Score=118.41  Aligned_cols=118  Identities=8%  Similarity=0.111  Sum_probs=97.7

Q ss_pred             CCHHHHHHHHHHHH---HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414           10 TAPDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus        10 ~~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      +...+...+..++.   ..++.+|||||||.|..++++|+..  +++|+++.+|++.++.+++++.+.++.+++++..+|
T Consensus        43 L~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d  120 (285)
T d1kpga_          43 LQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG  120 (285)
T ss_dssp             HHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhh
Confidence            33444455555555   4567899999999999999999985  589999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ..+.          .++||.|+.-..     ..++..+++.+.+.|+|||.++++++.
T Consensus       121 ~~~~----------~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         121 WEQF----------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             GGGC----------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             hhcc----------cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            8543          478999987654     345688999999999999999998765

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=1.9e-16  Score=117.37  Aligned_cols=119  Identities=16%  Similarity=0.192  Sum_probs=90.7

Q ss_pred             CCCCHHHHHHHHHHH--HHcCCCeEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCcchHHhHHHHHHHcCC----
Q 029414            8 MGTAPDAGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPE-----DGQITAIDVNRETYEIGLPIIKKAGV----   76 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~~~~la~~~~~-----~~~v~~iD~~~~~~~~a~~~~~~~~~----   76 (194)
                      ..++|...+.+-.++  ...++.+|||||||+|+.|..++..+.+     ..+|+++|.+++.++.+++++...+.    
T Consensus        60 ~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~  139 (223)
T d1r18a_          60 TISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLD  139 (223)
T ss_dssp             EECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcC
Confidence            345565555555444  4667899999999999999999887532     35899999999999999998765421    


Q ss_pred             CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           77 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        77 ~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ..|+.+.++|..+..+.       .++||.|++.+......   +.+.+.|+|||.+++-
T Consensus       140 ~~nv~~~~~d~~~~~~~-------~~~fD~Iiv~~a~~~~p---~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         140 SGQLLIVEGDGRKGYPP-------NAPYNAIHVGAAAPDTP---TELINQLASGGRLIVP  189 (223)
T ss_dssp             HTSEEEEESCGGGCCGG-------GCSEEEEEECSCBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             ccEEEEEeccccccccc-------ccceeeEEEEeechhch---HHHHHhcCCCcEEEEE
Confidence            13899999998775444       37899999998755543   3457899999999883

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=3.1e-15  Score=113.81  Aligned_cols=121  Identities=20%  Similarity=0.269  Sum_probs=98.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHc--CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414            6 AMMGTAPDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   83 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~--~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~   83 (194)
                      ..+...++++.++.......  ++.+|||+|||+|..++.+|...+ +.+++++|+++.+++.|++|+..+++. +++++
T Consensus        86 ~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~  163 (274)
T d2b3ta1          86 ATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHIL  163 (274)
T ss_dssp             TSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEE
T ss_pred             cccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCcc-cceee
Confidence            34566677777776655543  456899999999999999999987 899999999999999999999999985 79999


Q ss_pred             ecchHHHHHHHhhcCCCCCceeEEEEeCCc----------------------------cccHHHHHHHHhcccCCeEEEE
Q 029414           84 ESEALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        84 ~~d~~~~~~~~~~~~~~~~~fD~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ++|..+.++        .++||+|+++++.                            ..+..+++.+.++|+|||.+++
T Consensus       164 ~~d~~~~~~--------~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l  235 (274)
T d2b3ta1         164 QSDWFSALA--------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL  235 (274)
T ss_dssp             CCSTTGGGT--------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ecccccccC--------CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence            999866432        3689999998651                            1124567888899999999999


Q ss_pred             e
Q 029414          136 D  136 (194)
Q Consensus       136 ~  136 (194)
                      .
T Consensus       236 E  236 (274)
T d2b3ta1         236 E  236 (274)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.1e-16  Score=117.24  Aligned_cols=106  Identities=12%  Similarity=0.165  Sum_probs=85.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .+..+|||+|||+|..+..++...  ..+|+++|+++.+++.|++++...+.. +++++++|+.+...       ..++|
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~~~-------~~~~f  128 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFTP-------EPDSY  128 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCCC-------CSSCE
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccccc-cccccccccccccc-------ccccc
Confidence            456789999999999999987653  358999999999999999998877654 78999999977421       14789


Q ss_pred             eEEEEeCCc-----cccHHHHHHHHhcccCCeEEEEecccc
Q 029414          105 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       105 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      |+|++....     ++...+++.+.+.|+|||.+++.+...
T Consensus       129 D~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~  169 (222)
T d2ex4a1         129 DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  169 (222)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccc
Confidence            999988662     223578999999999999999876443

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.61  E-value=2.5e-14  Score=111.15  Aligned_cols=110  Identities=11%  Similarity=0.211  Sum_probs=93.0

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++++|||++||+|..++..+...  ..+|+++|.++..++.++++++.++++ .+++++.+|+.+.+.....+   .+
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~---~~  216 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH---HL  216 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT---TC
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhh---cC
Confidence            4468899999999999999887742  358999999999999999999999985 68999999999988776543   56


Q ss_pred             ceeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEecc
Q 029414          103 SFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       103 ~fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +||+|++|++.            .++..+++.+.++|+|||+|++...
T Consensus       217 ~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         217 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            89999999761            2456788889999999999999643

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.61  E-value=6.1e-16  Score=116.79  Aligned_cols=104  Identities=13%  Similarity=0.111  Sum_probs=84.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++++|||+|||+|..+..++...  .++|+|+|+|+++++.|+++....+...++.+.++|+......      ..++|
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~------~~~~f   94 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD------LGKEF   94 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC------CSSCE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc------ccccc
Confidence            466899999999999999988762  4689999999999999999998887777899999998543111      14689


Q ss_pred             eEEEEeCCc-------cccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+|++....       .....+++.+.+.|+|||++++.
T Consensus        95 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          95 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            999987652       23457889999999999999984

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=6.1e-15  Score=106.16  Aligned_cols=121  Identities=15%  Similarity=0.072  Sum_probs=96.4

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      +++++...+.+...+.......+|||++||+|..++..+...  ..+|+.+|.++.+++.++++++..+.. +++++.+|
T Consensus        24 RPt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrG--a~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d  100 (183)
T d2fpoa1          24 RPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSN  100 (183)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSC
T ss_pred             CcCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecC--cceeEEEEEeechhhHHHHHHhhcccc-ceeeeeec
Confidence            566677777777777666788999999999999999877653  358999999999999999999988765 78999999


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHh--cccCCeEEEEe
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMK--LLKVGGIAVYD  136 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~--~L~~gG~lv~~  136 (194)
                      +.+++...      ..+||+||+|++.  ......++.+.+  .|+++|+|+++
T Consensus       101 ~~~~l~~~------~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         101 AMSFLAQK------GTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             HHHHHSSC------CCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cccccccc------ccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence            98876542      5789999999873  334566666654  69999999995

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=6.3e-15  Score=104.93  Aligned_cols=122  Identities=13%  Similarity=0.124  Sum_probs=87.4

Q ss_pred             cCCCCHHHHHHHHHHHHH-cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec
Q 029414            7 MMGTAPDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      +++++...+.+...+... .++.+|||+|||+|..++..+..   +.+++++|.++.+++.++++++..++..+  +...
T Consensus        21 Rpt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~--v~~~   95 (171)
T d1ws6a1          21 RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGAR--VVAL   95 (171)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCE--EECS
T ss_pred             CCCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccc--eeee
Confidence            345555555555555543 46789999999999999987775   56899999999999999999999998754  4445


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCC-ccccHHHHHHHH--hcccCCeEEEEe
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDAD-KDNYCNYHERLM--KLLKVGGIAVYD  136 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~-~~~~~~~~~~~~--~~L~~gG~lv~~  136 (194)
                      ++...+.....   ..++||+||+|++ ..+....+..+.  .+|+|||+++++
T Consensus        96 ~~d~~~~~~~~---~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1          96 PVEVFLPEAKA---QGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             CHHHHHHHHHH---TTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             ehhcccccccc---cCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            55444333221   1468999999986 223334444443  579999999985

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.59  E-value=1.4e-15  Score=115.05  Aligned_cols=103  Identities=8%  Similarity=0.098  Sum_probs=82.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      +..+|||+|||+|..+..++...  ..+|+++|+++.+++.|++++...   ++++++++|..++..       ..++||
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~--~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~-------~~~~fD  160 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATL-------PPNTYD  160 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCC-------CSSCEE
T ss_pred             CCCeEEEecccCChhhHHHHhhc--CceEEEEcCCHHHHHhhhcccccc---ccceeEEcccccccc-------CCCccc
Confidence            56799999999999999987653  248999999999999999887533   378999999866421       147899


Q ss_pred             EEEEeCCc-----cccHHHHHHHHhcccCCeEEEEecccc
Q 029414          106 YAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       106 ~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      +|++....     ++...+++.+.+.|+|||.|++.+...
T Consensus       161 ~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~  200 (254)
T d1xtpa_         161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS  200 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             eEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCC
Confidence            99998762     223578999999999999999976544

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.59  E-value=1.7e-15  Score=112.46  Aligned_cols=106  Identities=15%  Similarity=0.150  Sum_probs=86.0

Q ss_pred             HHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHh
Q 029414           16 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   95 (194)
Q Consensus        16 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~   95 (194)
                      -.+..+....++++|||||||+|..+..++..   +.+|+++|+++++++.|+++.     ..++++++++..+...   
T Consensus        10 ~~~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~~---   78 (225)
T d2p7ia1          10 FMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQL---   78 (225)
T ss_dssp             HHHHHHGGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCCC---
T ss_pred             HHHHHhhhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhccc-----cccccccccccccccc---
Confidence            34556666778899999999999999999875   458999999999999998764     3479999999866421   


Q ss_pred             hcCCCCCceeEEEEeCC---ccccHHHHHHHH-hcccCCeEEEEec
Q 029414           96 KYSENEGSFDYAFVDAD---KDNYCNYHERLM-KLLKVGGIAVYDN  137 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~---~~~~~~~~~~~~-~~L~~gG~lv~~~  137 (194)
                           .++||+|++...   ..+...+++.+. ++|+|||.+++.-
T Consensus        79 -----~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          79 -----PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             -----SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -----ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEe
Confidence                 478999998765   456778888887 7899999999863

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.9e-15  Score=111.47  Aligned_cols=123  Identities=7%  Similarity=-0.026  Sum_probs=96.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC-------------
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-------------   75 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-------------   75 (194)
                      ..++...+.+..+....++.+|||+|||.|..+.+||..   +.+|+++|+|+++++.+++......             
T Consensus        28 ~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~  104 (229)
T d2bzga1          28 QGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKV  104 (229)
T ss_dssp             TCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEE
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccce
Confidence            355666677777777778889999999999999999985   6799999999999999988765321             


Q ss_pred             ---CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414           76 ---VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        76 ---~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                         ...+++++++|..+..+..      .+.||+|+....     ......+++.+.++|||||.+++....+
T Consensus       105 ~~~~~~~v~~~~~d~~~l~~~~------~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~  171 (229)
T d2bzga1         105 FKSSSGNISLYCCSIFDLPRTN------IGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSY  171 (229)
T ss_dssp             EEETTSSEEEEESCGGGGGGSC------CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred             eeecCCcEEEEEcchhhccccc------cCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence               1247899999987654332      578999987653     4566788999999999999887765444

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.59  E-value=2.2e-15  Score=113.85  Aligned_cols=104  Identities=14%  Similarity=0.191  Sum_probs=88.1

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .+.++|||||||+|..+..+++.++ +.+++++|. ++.++.+++++...++.++++++.+|..+.  .       .++|
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~--~-------~~~~  147 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP--L-------PRKA  147 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC--C-------SSCE
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh--c-------ccch
Confidence            4568999999999999999999987 899999998 779999999999999988999999997542  1       3579


Q ss_pred             eEEEEeCCc-----cccHHHHHHHHhcccCCeEEEEeccc
Q 029414          105 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       105 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      |+|++....     ++...+++++.+.|||||.+++.+..
T Consensus       148 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         148 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            999987653     23357799999999999999987654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.58  E-value=3.3e-15  Score=109.71  Aligned_cols=106  Identities=17%  Similarity=0.161  Sum_probs=85.9

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+..+|..++ +++|+++|+++++++.++++.+..+   |+.++.+|+.......    .....
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~----~~~~~  125 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYS----GIVEK  125 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTT----TTCCC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccc----cccce
Confidence            44678999999999999999999987 7899999999999999999988764   8999999876532111    11356


Q ss_pred             eeEEEEeCC-ccccHHHHHHHHhcccCCeEEEEec
Q 029414          104 FDYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       104 fD~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +|++|.+.. ..+...+++++.+.|||||.+++.+
T Consensus       126 vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         126 VDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            888888754 4556778999999999999998854

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.58  E-value=1.6e-14  Score=111.27  Aligned_cols=122  Identities=14%  Similarity=0.183  Sum_probs=95.8

Q ss_pred             CHHHHHHHHHHHH-HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC-cEEEEecchH
Q 029414           11 APDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEAL   88 (194)
Q Consensus        11 ~~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~   88 (194)
                      .+....++..++. ..++++|||++||+|..++.+|..   +.+|+++|.++.+++.|++|++.+++.+ +++++++|+.
T Consensus       116 qr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~  192 (309)
T d2igta1         116 QIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM  192 (309)
T ss_dssp             GHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH
T ss_pred             hhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHH
Confidence            4455666665544 457889999999999999999875   5699999999999999999999998864 6999999999


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCc-------------cccHHHHHHHHhcccCCeEEEEecc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDADK-------------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~~-------------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +++.....+   ...||+|++|++.             .+....++.+.++|+|||.+++...
T Consensus       193 ~~l~~~~~~---~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         193 KFIQREERR---GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             HHHHHHHHH---TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             HhHHHHhhc---CCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            988765443   5789999999761             1223455677889999987665433

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=2.5e-15  Score=112.24  Aligned_cols=95  Identities=19%  Similarity=0.255  Sum_probs=76.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..++..   +.+|+|+|+++.+++.|+++.    ..   .++.+++.+. + +     ..++||
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~----~~---~~~~~~~~~l-~-~-----~~~~fD  104 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG----VK---NVVEAKAEDL-P-F-----PSGAFE  104 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT----CS---CEEECCTTSC-C-S-----CTTCEE
T ss_pred             CCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccc----cc---cccccccccc-c-c-----cccccc
Confidence            5679999999999999999985   569999999999999999863    22   2456777653 1 1     247899


Q ss_pred             EEEEeCC----ccccHHHHHHHHhcccCCeEEEEec
Q 029414          106 YAFVDAD----KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       106 ~i~id~~----~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +|++-..    .++...+++.+.+.|+|||+++++.
T Consensus       105 ~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         105 AVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             EEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence            9997543    4577889999999999999999864

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.58  E-value=5.3e-15  Score=111.98  Aligned_cols=106  Identities=15%  Similarity=0.139  Sum_probs=89.4

Q ss_pred             HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           23 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ...++.+|||+|||+|..++.+|...  .++|+++|++|.+++.++++++.+++.++++++++|+.++..        .+
T Consensus       104 ~~~~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~--------~~  173 (260)
T d2frna1         104 VAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------EN  173 (260)
T ss_dssp             HCCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CS
T ss_pred             hcCCccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc--------CC
Confidence            34578999999999999999999862  469999999999999999999999999899999999976532        36


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      .||.|+++.+. ....+++.+.+.|++||+|.+++..
T Consensus       174 ~~D~Ii~~~p~-~~~~~l~~a~~~l~~gG~lh~~~~~  209 (260)
T d2frna1         174 IADRILMGYVV-RTHEFIPKALSIAKDGAIIHYHNTV  209 (260)
T ss_dssp             CEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCEEEECCCC-chHHHHHHHHhhcCCCCEEEEEecc
Confidence            79999997653 3456788899999999999876543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=1.4e-14  Score=111.48  Aligned_cols=117  Identities=15%  Similarity=0.181  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC---CcEEEEecchHHH
Q 029414           14 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSV   90 (194)
Q Consensus        14 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~   90 (194)
                      ..+++..++...+.++|||+|||+|..+..||+.   +.+|+++|+|+++++.|+++....+..   .+..+...+....
T Consensus        44 ~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (292)
T d1xvaa_          44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL  120 (292)
T ss_dssp             HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred             HHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccc
Confidence            4566667777777889999999999999999985   569999999999999999998876643   1244555666544


Q ss_pred             HHHHhhcCCCCCceeEEEEeCC-----------ccccHHHHHHHHhcccCCeEEEEec
Q 029414           91 LDQLLKYSENEGSFDYAFVDAD-----------KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        91 ~~~~~~~~~~~~~fD~i~id~~-----------~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ...+.    ..++||+|++-..           ..+...+++.+.+.|||||+++++.
T Consensus       121 ~~~~~----~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         121 DKDVP----AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             HHHSC----CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccC----CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            33321    1468999997542           1235578999999999999999963

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.56  E-value=1.1e-14  Score=106.35  Aligned_cols=104  Identities=17%  Similarity=0.318  Sum_probs=87.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ....|||||||+|.++..+|+..| +..++++|+++..+..+.+++...+++ |+.++.+|+.+....+     ...++|
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p-~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~-----~~~~~~  103 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYF-----EDGEID  103 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTS-----CTTCCS
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCC-CCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhc-----cCCcee
Confidence            445799999999999999999987 899999999999999999999999986 8999999997754333     246899


Q ss_pred             EEEEeCCc---c--------ccHHHHHHHHhcccCCeEEEEe
Q 029414          106 YAFVDADK---D--------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       106 ~i~id~~~---~--------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .|++..+.   .        ....+++.+.+.|+|||.|.+.
T Consensus       104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~  145 (204)
T d1yzha1         104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  145 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            99876431   1        1368899999999999999873

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.55  E-value=1.2e-14  Score=108.09  Aligned_cols=107  Identities=16%  Similarity=0.083  Sum_probs=82.3

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+..+|...+ +++|+++|+++.+++.+++.....   +++..+.+|+.......    +....
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~----~~~~~  143 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYA----NIVEK  143 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGT----TTCCC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccc----cccce
Confidence            34678999999999999999999876 899999999999999998876543   37888888876543221    01234


Q ss_pred             eeEEEEeCC-ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          104 FDYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       104 fD~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +|+++.+.. ..+...+++++.+.|||||.+++..-
T Consensus       144 v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k  179 (230)
T d1g8sa_         144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK  179 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEeeccccchHHHHHHHHHHHHhcccCceEEEEee
Confidence            566666544 45567779999999999999988643

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=8.9e-15  Score=108.53  Aligned_cols=106  Identities=17%  Similarity=0.181  Sum_probs=85.1

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++.+|||+|||+|..+..+|..+.++++|+++|+++.+++.++++.+..+   ++..+..|+..... +.   ...+.
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~-~~---~~~~~  143 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEE-YR---ALVPK  143 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGG-GT---TTCCC
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCccc-cc---ccccc
Confidence            3467899999999999999999998778999999999999999998876543   67777777644211 11   11468


Q ss_pred             eeEEEEeCCc-cccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~~-~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|+||.|... .....+++.+.+.|||||.+++.
T Consensus       144 vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            9999998763 45677899999999999999885

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=1e-13  Score=107.27  Aligned_cols=106  Identities=16%  Similarity=0.198  Sum_probs=89.0

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc--C--CCCcEEEEecchHHHHHHHhhcCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--G--VDHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~--~~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      ..++++||.||.|.|..+.++++..+ ..+++++|++++.++.+++.+...  +  -+++++++.+|+.+++...     
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~-----  148 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-----  148 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-----
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc-----
Confidence            55789999999999999999987654 789999999999999999998542  1  2368999999999988763     


Q ss_pred             CCCceeEEEEeCCc----------cccHHHHHHHHhcccCCeEEEEe
Q 029414          100 NEGSFDYAFVDADK----------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       100 ~~~~fD~i~id~~~----------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                       .++||+|++|...          -...++++.+.+.|+|||++++.
T Consensus       149 -~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         149 -EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             -CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             -CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence             5789999999631          12468999999999999999985

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.50  E-value=9.5e-13  Score=100.22  Aligned_cols=106  Identities=15%  Similarity=0.208  Sum_probs=87.2

Q ss_pred             HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc---------CCCCcEEEEecchHHHHH
Q 029414           22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---------GVDHKINFIESEALSVLD   92 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---------~~~~~v~~~~~d~~~~~~   92 (194)
                      ....++++||.+|.|.|..+..+++. + ..+++.+|++++.++.+++.+...         ...++++++.+|+.+.+.
T Consensus        68 ~~~~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~  145 (276)
T d1mjfa_          68 LAHPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK  145 (276)
T ss_dssp             HHSSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred             hcCCCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh
Confidence            33567899999999999999888775 3 569999999999999999877432         124689999999998876


Q ss_pred             HHhhcCCCCCceeEEEEeCCc-------cccHHHHHHHHhcccCCeEEEEe
Q 029414           93 QLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        93 ~~~~~~~~~~~fD~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +       .++||+|++|...       -...++++.+.+.|+|||+++++
T Consensus       146 ~-------~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         146 N-------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             H-------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             c-------cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            5       4789999999652       22468899999999999999985

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=3.5e-14  Score=108.03  Aligned_cols=94  Identities=18%  Similarity=0.243  Sum_probs=77.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++.+|||+|||+|..+..++...+ +.+++++|+++.+++.|+++.      +++++.++|+.+..  +     .+++||
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~--~-----~~~sfD  149 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLP--F-----SDTSMD  149 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCS--B-----CTTCEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhccc------ccccceeeehhhcc--C-----CCCCEE
Confidence            567999999999999999999886 889999999999999988753      37899999986641  1     257899


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +|++......    ++++.+.|||||.+++..
T Consensus       150 ~v~~~~~~~~----~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         150 AIIRIYAPCK----AEELARVVKPGGWVITAT  177 (268)
T ss_dssp             EEEEESCCCC----HHHHHHHEEEEEEEEEEE
T ss_pred             EEeecCCHHH----HHHHHHHhCCCcEEEEEe
Confidence            9997655433    567889999999999964

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.48  E-value=6.2e-14  Score=105.92  Aligned_cols=104  Identities=15%  Similarity=0.169  Sum_probs=87.8

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      ...++|||||||+|..+..+++.+| +.+++++|+ |+.++.+++++...++.+++.+..+|..+.   +      ..+|
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~---~------p~~~  148 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP---L------PVTA  148 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------SCCE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc---c------cccc
Confidence            3567999999999999999999997 899999997 889999999999999888999999987552   1      3569


Q ss_pred             eEEEEeCCc-----cccHHHHHHHHhcccCCeEEEEeccc
Q 029414          105 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       105 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      |+|++....     +....+++++.+.|||||.+++.+..
T Consensus       149 D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         149 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             hhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            999987552     33467799999999999988887654

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=3.2e-14  Score=103.98  Aligned_cols=100  Identities=19%  Similarity=0.205  Sum_probs=79.2

Q ss_pred             HHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhc
Q 029414           18 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   97 (194)
Q Consensus        18 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~   97 (194)
                      +..+....+..+|||||||+|..+..++       +++++|+++.+++.++++        ++.++++|+.+...     
T Consensus        28 ~~~~~~~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~-----   87 (208)
T d1vlma_          28 LQAVKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPL-----   87 (208)
T ss_dssp             HHHHHHHCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCS-----
T ss_pred             HHHHHhhCCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc--------cccccccccccccc-----
Confidence            3445555566789999999999877763       468999999999998863        58899999866411     


Q ss_pred             CCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           98 SENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        98 ~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                        .+++||+|++...   .++...+++++.+.|+|||.+++....
T Consensus        88 --~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~  130 (208)
T d1vlma_          88 --KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD  130 (208)
T ss_dssp             --CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             --ccccccccccccccccccccccchhhhhhcCCCCceEEEEecC
Confidence              1478999998865   456788999999999999999997653

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.46  E-value=3.6e-13  Score=103.14  Aligned_cols=107  Identities=16%  Similarity=0.157  Sum_probs=89.0

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC--C-CCcEEEEecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ..+|++||-||.|.|..+.++++..+ ..+++++|++++.++.+++.+....  + +++++++.+|+.+++...      
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------  159 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------  159 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC------
Confidence            45789999999999999999988654 7899999999999999999886432  1 369999999999987653      


Q ss_pred             CCceeEEEEeCCc--------cccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~--------~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .++||+|++|...        -...++++.+.+.|+|||++++..
T Consensus       160 ~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         160 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            5789999999641        225789999999999999999863

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.45  E-value=6e-13  Score=95.50  Aligned_cols=125  Identities=13%  Similarity=0.090  Sum_probs=96.9

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEec
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIES   85 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~   85 (194)
                      +++++...+++...+.......+|||+.||+|..++..+...  ..+++.+|.+...++..+++++..+.. ....+...
T Consensus        24 RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRG--A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~  101 (183)
T d2ifta1          24 RPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQ  101 (183)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECS
T ss_pred             CcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeec--ceeeEEeecccchhhhHhhHHhhhcccccccccccc
Confidence            677888888888888776788999999999999999988763  359999999999999999999998875 35778888


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHH--hcccCCeEEEEec
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM--KLLKVGGIAVYDN  137 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~--~~L~~gG~lv~~~  137 (194)
                      |+.+.+....    ...+||+||+|++..  .....++.+.  ..|+++|+|+++-
T Consensus       102 d~~~~l~~~~----~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         102 SSLDFLKQPQ----NQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             CHHHHTTSCC----SSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cccccccccc----cCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            8777654321    235799999999842  3456666664  4799999999963

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.44  E-value=5.6e-13  Score=102.57  Aligned_cols=109  Identities=17%  Similarity=0.185  Sum_probs=87.7

Q ss_pred             HHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC---CCcEEEEecchHHHHHHHhhcC
Q 029414           22 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKYS   98 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~   98 (194)
                      ....+|++||-||.|.|..+.++++..+ ..+++.+|++++.++.+++.+.....   .++++++.+|+.+++...    
T Consensus       102 ~~~~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~----  176 (312)
T d2b2ca1         102 FAHPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH----  176 (312)
T ss_dssp             HHSSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC----
T ss_pred             hcCCCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC----
Confidence            3356789999999999999999988644 67999999999999999998854321   368999999999988763    


Q ss_pred             CCCCceeEEEEeCC-------ccccHHHHHHHHhcccCCeEEEEec
Q 029414           99 ENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        99 ~~~~~fD~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                        .++||+|++|..       .-...++++.+.+.|+|||+++...
T Consensus       177 --~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         177 --KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             --TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             --CCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence              578999999964       1235688999999999999999963

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.44  E-value=2.4e-12  Score=97.77  Aligned_cols=147  Identities=16%  Similarity=0.152  Sum_probs=108.8

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc-C--CCCcEEEEecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-G--VDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~--~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ..++++||-||.|.|..+.++++..+ ..+++.+|++++.++.+++.+... +  -+++++++.+|+.+.+...      
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~------  145 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------  145 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc------
Confidence            45789999999999999999988654 689999999999999999988542 1  2469999999999988763      


Q ss_pred             CCceeEEEEeCCc-------cccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 029414          101 EGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD  173 (194)
Q Consensus       101 ~~~fD~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (194)
                      .++||+|++|...       -...++++.+.+.|+|||+++.......        .        .........+.+++.
T Consensus       146 ~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~--------~--------~~~~~~~i~~tl~~~  209 (274)
T d1iy9a_         146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPW--------F--------TPELITNVQRDVKEI  209 (274)
T ss_dssp             CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTT--------T--------CHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCcc--------c--------cHHHHHHHHHhhhhh
Confidence            5789999999642       2367899999999999999998632210        0        112356666677764


Q ss_pred             -CCeE--EEeeec----CCeeEEEEEc
Q 029414          174 -PRVQ--LSHVAL----GDGITICRRI  193 (194)
Q Consensus       174 -~~~~--~~~~p~----~~G~~i~~~~  193 (194)
                       |.+.  ...+|.    .+|+.++.++
T Consensus       210 F~~v~~y~~~vPsy~~g~w~f~~aS~~  236 (274)
T d1iy9a_         210 FPITKLYTANIPTYPSGLWTFTIGSKK  236 (274)
T ss_dssp             CSEEEEEEECCTTSGGGCEEEEEEESS
T ss_pred             cCceEEEEEEeeecCCCceEEEEEcCC
Confidence             4333  333343    2578877754

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.43  E-value=2.8e-13  Score=100.47  Aligned_cols=118  Identities=20%  Similarity=0.296  Sum_probs=86.8

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      .|.-..++..++...+|++|||||++.|.++++++..+   ..+++++++|+++........      ..++++++++|+
T Consensus        65 ~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs  138 (232)
T d2bm8a1          65 DPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDC  138 (232)
T ss_dssp             CHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCS
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeeccc
Confidence            36667788889988899999999999999999887543   457999999998865543321      125899999987


Q ss_pred             HH--HHHHHhhcCCCCCceeEEEEeCCccccHHHHH-HHHhcccCCeEEEEeccc
Q 029414           88 LS--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        88 ~~--~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~-~~~~~L~~gG~lv~~~~~  139 (194)
                      .+  .+..+     ....+|+||+|+.+.......+ ...++|++||+++++|..
T Consensus       139 ~~~~~~~~l-----~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         139 SDLTTFEHL-----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             SCSGGGGGG-----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSCH
T ss_pred             ccHHHHHHH-----HhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEEcCC
Confidence            54  33333     1346899999988544322222 245899999999999875

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=4.6e-13  Score=104.54  Aligned_cols=104  Identities=16%  Similarity=0.175  Sum_probs=83.3

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++++|||+|||+|..++.+|+..  ..+|+++|.++ .+..+++.....+..+++++++++..+...       ..++
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~G--a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~-------~~~~  105 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL-------PFPK  105 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC-------SSSC
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhC--CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC-------cccc
Confidence            4578999999999999999888863  35999999986 778999999999998899999999876411       1478


Q ss_pred             eeEEEEeCC------ccccHHHHHHHHhcccCCeEEEEec
Q 029414          104 FDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       104 fD~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ||+|++...      .......+....+.|||||.++-+.
T Consensus       106 ~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~  145 (328)
T d1g6q1_         106 VDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDK  145 (328)
T ss_dssp             EEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             eeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeee
Confidence            999998643      2345566777789999999997543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.7e-13  Score=103.47  Aligned_cols=107  Identities=11%  Similarity=0.061  Sum_probs=79.8

Q ss_pred             eEEEEcccccHHHHHHHhhC----C-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEE--EEecchHHHHHHHhhcCCCC
Q 029414           29 KTIEIGVFTGYSLLLTALTI----P-EDGQITAIDVNRETYEIGLPIIKKAGVDHKIN--FIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~----~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~--~~~~d~~~~~~~~~~~~~~~  101 (194)
                      +|||||||+|..+..++..+    + ...+++++|+++.+++.+++++......+++.  +...++.+....... ....
T Consensus        43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  121 (280)
T d1jqea_          43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE-KKEL  121 (280)
T ss_dssp             EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT-SSSC
T ss_pred             eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc-cCCC
Confidence            79999999999988887653    2 13468999999999999999987654334554  456666554333211 1235


Q ss_pred             CceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEe
Q 029414          102 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       102 ~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++||+|++...   .++...+++.+.++|+|||.+++.
T Consensus       122 ~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~  159 (280)
T d1jqea_         122 QKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII  159 (280)
T ss_dssp             CCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEE
Confidence            78999998765   456788999999999999998874

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=3.2e-13  Score=104.89  Aligned_cols=104  Identities=17%  Similarity=0.184  Sum_probs=83.4

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++++|||+|||+|..++.+|+..  ..+|+++|.++. ...+++.+..+++.++++++++++.+...       ..++
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~G--a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~-------~~~~  100 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL-------PVEK  100 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC-------SSSC
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhC--CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc-------ccce
Confidence            4578999999999999999988863  358999999874 67888888899998899999999877421       1478


Q ss_pred             eeEEEEeCC------ccccHHHHHHHHhcccCCeEEEEec
Q 029414          104 FDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       104 fD~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ||+|++...      ......++..+.+.|+|||.++-..
T Consensus       101 ~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~  140 (316)
T d1oria_         101 VDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR  140 (316)
T ss_dssp             EEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             eEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeee
Confidence            999987643      2345678888889999999998543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.1e-13  Score=103.42  Aligned_cols=112  Identities=12%  Similarity=0.092  Sum_probs=86.0

Q ss_pred             HHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc-------CC-CCcEEEEecchHHHH-
Q 029414           21 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-------GV-DHKINFIESEALSVL-   91 (194)
Q Consensus        21 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-------~~-~~~v~~~~~d~~~~~-   91 (194)
                      .+...+..+|||+|||+|..+..+|...+ ..+++|+|+++.+++.|+++....       +. ..+++++++|+.+.. 
T Consensus       146 ~~~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~  224 (328)
T d1nw3a_         146 EIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEW  224 (328)
T ss_dssp             HSCCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHH
T ss_pred             HcCCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccc
Confidence            33456678999999999999999998876 678999999999999988776543       32 257999999987642 


Q ss_pred             HHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414           92 DQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ...      ....|+|++...  .++....++++.+.|||||.||+...+
T Consensus       225 ~~~------~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~  268 (328)
T d1nw3a_         225 RER------IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  268 (328)
T ss_dssp             HHH------HHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             ccc------cCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence            111      123688888654  345667889999999999999986543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-12  Score=99.82  Aligned_cols=106  Identities=14%  Similarity=0.173  Sum_probs=87.6

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHc---CCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ..+|++||-+|.|.|..+..+.+..+ ..+++.+|++++.++.+++.+...   --+++++++.+|+.+++...      
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~------  148 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------  148 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC------
Confidence            45789999999999999999987654 689999999999999999988542   12469999999999988753      


Q ss_pred             CCceeEEEEeCC-------ccccHHHHHHHHhcccCCeEEEEe
Q 029414          101 EGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       101 ~~~fD~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .++||+|++|..       .-...++++.+.+.|+|||+++++
T Consensus       149 ~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         149 QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence            478999999964       122457899999999999999986

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.39  E-value=2e-12  Score=98.98  Aligned_cols=108  Identities=20%  Similarity=0.310  Sum_probs=89.5

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC---CCCcEEEEecchHHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---VDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ..++++||-+|.|.|..+..+++..+ ..+++.+|++++.++.+++.+....   -+++++++.+|+.+.+...     .
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~-----~  151 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----A  151 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----C
T ss_pred             CCCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc-----c
Confidence            35789999999999999999988654 6799999999999999999885322   2469999999999988663     1


Q ss_pred             CCceeEEEEeCCc-------cccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .++||+|++|...       -...++++.+.+.|+|||+++++-
T Consensus       152 ~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         152 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            3589999999752       235789999999999999999964

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.39  E-value=5.9e-12  Score=95.26  Aligned_cols=122  Identities=17%  Similarity=0.227  Sum_probs=93.2

Q ss_pred             cCCCCHHHHHHHHHHHH---HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE
Q 029414            7 MMGTAPDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   83 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~   83 (194)
                      .+...|+++.++.....   ..+..+++|+|||+|..++.++.. + +.+|+++|+++++++.|++|++.+++.+++.+.
T Consensus        88 vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~-~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~  165 (271)
T d1nv8a_          88 VFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVR  165 (271)
T ss_dssp             SCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             ccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-c-cceeeechhhhhHHHHHHHHHHHcCCCceeEEe
Confidence            44556666666655443   335678999999999999998864 4 899999999999999999999999998889999


Q ss_pred             ecchHHHHHHHhhcCCCCCceeEEEEeCCc----------------------cccHHHHHH-HHhcccCCeEEEEe
Q 029414           84 ESEALSVLDQLLKYSENEGSFDYAFVDADK----------------------DNYCNYHER-LMKLLKVGGIAVYD  136 (194)
Q Consensus        84 ~~d~~~~~~~~~~~~~~~~~fD~i~id~~~----------------------~~~~~~~~~-~~~~L~~gG~lv~~  136 (194)
                      .++..+.....      .++||+|+.+++.                      .+-..+++. +.++|+|||++++.
T Consensus       166 ~~~~~~~~~~~------~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E  235 (271)
T d1nv8a_         166 KGEFLEPFKEK------FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  235 (271)
T ss_dssp             ESSTTGGGGGG------TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             ecccccccccc------cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence            99987765443      4789999998650                      001233333 45789999999995

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=7.6e-13  Score=102.49  Aligned_cols=103  Identities=17%  Similarity=0.165  Sum_probs=80.1

Q ss_pred             HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           24 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ..++++|||||||+|..++.+|+..  ..+|+++|.++.+. .+++.....+..+++++++++..+....       .++
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~G--a~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~~-------~~~  102 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHLP-------VEK  102 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCCS-------CSC
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcC--CCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcCc-------ccc
Confidence            4478899999999999999999863  35899999998764 5777778888888999999998774211       478


Q ss_pred             eeEEEEeCC-----c-cccHHHHHHHHhcccCCeEEEEe
Q 029414          104 FDYAFVDAD-----K-DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       104 fD~i~id~~-----~-~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ||+|+....     . .....++....+.|+|||.++-+
T Consensus       103 ~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~  141 (311)
T d2fyta1         103 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD  141 (311)
T ss_dssp             EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             ceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence            999998643     1 23445566667899999999854

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.36  E-value=2e-11  Score=88.62  Aligned_cols=92  Identities=13%  Similarity=0.151  Sum_probs=71.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHc---CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEE
Q 029414            6 AMMGTAPDAGQLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF   82 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~---~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~   82 (194)
                      .+. +.+..+..+..++...   .+++|||+|||+|..++.++...  ..+|+++|+++.+++.+++++...+.  +.++
T Consensus        24 qy~-Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g--~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~   98 (201)
T d1wy7a1          24 QYR-TPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFKG--KFKV   98 (201)
T ss_dssp             CCC-CCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGTT--SEEE
T ss_pred             cCC-CCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcC--CCEEEEEcCcHHHHHHHHHHHHHcCC--CceE
Confidence            443 4455555544544433   57899999999999999887642  35999999999999999999988774  6788


Q ss_pred             EecchHHHHHHHhhcCCCCCceeEEEEeCC
Q 029414           83 IESEALSVLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        83 ~~~d~~~~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      +.+|+.+.          .++||+|++|++
T Consensus        99 ~~~d~~~~----------~~~fD~Vi~nPP  118 (201)
T d1wy7a1          99 FIGDVSEF----------NSRVDIVIMNPP  118 (201)
T ss_dssp             EESCGGGC----------CCCCSEEEECCC
T ss_pred             EECchhhh----------CCcCcEEEEcCc
Confidence            99997553          478999999987

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.36  E-value=4.2e-12  Score=91.53  Aligned_cols=110  Identities=18%  Similarity=0.164  Sum_probs=88.2

Q ss_pred             HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           23 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ...++..+||++||+|..+..+++.++ +++++++|.++++++.+++++...+  .++.++++++.+.-..+...  ..+
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~--~~~   94 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTL--GIE   94 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHT--TCS
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHc--CCC
Confidence            345678999999999999999999986 8999999999999999999998765  58999999887653222211  236


Q ss_pred             ceeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEec
Q 029414          103 SFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       103 ~fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +||.|+.|...            ......++.+.+.|+|||.+++-+
T Consensus        95 ~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          95 KVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             CEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             CcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence            89999999653            223466788889999999998854

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.8e-11  Score=92.33  Aligned_cols=163  Identities=17%  Similarity=0.145  Sum_probs=115.8

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            7 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      ...+.....++...++...++.+|||++++.|.=|..+|.... +++++++|.++..+...++++.+.+.. ++.+...+
T Consensus        83 ~~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~  160 (284)
T d1sqga2          83 WVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDG  160 (284)
T ss_dssp             SEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCT
T ss_pred             EEEeccccccccccccCccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccc
Confidence            3445555666666677677888999999999999999998776 799999999999999999999999986 55555555


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCc---------c----------------ccHHHHHHHHhcccCCeEEEEeccccc
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADK---------D----------------NYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~---------~----------------~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      ........      .+.||.|++|++.         +                -....++.+.++|+|||.||...+...
T Consensus       161 ~~~~~~~~------~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~  234 (284)
T d1sqga2         161 RYPSQWCG------EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL  234 (284)
T ss_dssp             TCTHHHHT------TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred             cccchhcc------cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence            43322221      4689999999751         0                124667888899999999999876642


Q ss_pred             ccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEE-----------eeec---CCeeEEEEEcC
Q 029414          142 GTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS-----------HVAL---GDGITICRRIF  194 (194)
Q Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~p~---~~G~~i~~~~~  194 (194)
                      -.      +        -...++.|+   .++++++..           ++|-   .+|+-+|+.+|
T Consensus       235 ~~------E--------NE~vv~~~l---~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGFF~A~l~K  284 (284)
T d1sqga2         235 PE------E--------NSLQIKAFL---QRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK  284 (284)
T ss_dssp             GG------G--------THHHHHHHH---HHCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEEEC
T ss_pred             hh------h--------CHHHHHHHH---HhCCCcEEecCCCCCCCcEEECCCCCCcccEEEEEEEC
Confidence            21      1        122355554   446666542           3332   37899988775

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=7.4e-12  Score=99.62  Aligned_cols=111  Identities=13%  Similarity=0.205  Sum_probs=82.7

Q ss_pred             HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC-------CC-CcEEE-EecchHH--HH
Q 029414           23 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-------VD-HKINF-IESEALS--VL   91 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-------~~-~~v~~-~~~d~~~--~~   91 (194)
                      ...+++++||+|||.|..++.+|...+ ..+++|+|+++.+++.|+++.+..+       .. ..+.+ ..++..+  ..
T Consensus       213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~  291 (406)
T d1u2za_         213 QLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRV  291 (406)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHH
T ss_pred             CCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccc
Confidence            356778999999999999999999876 6799999999999999998886532       11 23333 3344332  22


Q ss_pred             HHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414           92 DQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ...      ....|+|++...  .++....++++.+.|||||.||+.+.+.
T Consensus       292 d~~------~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~~  336 (406)
T d1u2za_         292 AEL------IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLR  336 (406)
T ss_dssp             HHH------GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             ccc------cccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEecccC
Confidence            222      256899998754  4566788999999999999999876543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.31  E-value=8.6e-12  Score=90.06  Aligned_cols=92  Identities=16%  Similarity=0.206  Sum_probs=69.6

Q ss_pred             cccccCCCCHHHHHHHHHHHHHc--CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcE
Q 029414            3 ILRAMMGTAPDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI   80 (194)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~l~~~~--~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v   80 (194)
                      .+.++.+..+..+.++..+....  .+++|||+|||+|..++.++...  ..+|+++|+++.+++.|++++      .++
T Consensus        23 ~leQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~g--a~~V~~vDid~~a~~~ar~N~------~~~   94 (197)
T d1ne2a_          23 YLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNC------GGV   94 (197)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHC------TTS
T ss_pred             ccccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcC--CCcccccccCHHHHHHHHHcc------ccc
Confidence            45667676666666665544432  57899999999999998877753  358999999999999999875      268


Q ss_pred             EEEecchHHHHHHHhhcCCCCCceeEEEEeCC
Q 029414           81 NFIESEALSVLDQLLKYSENEGSFDYAFVDAD  112 (194)
Q Consensus        81 ~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~  112 (194)
                      +++.+|..+.          .++||+|+++++
T Consensus        95 ~~~~~D~~~l----------~~~fD~Vi~NPP  116 (197)
T d1ne2a_          95 NFMVADVSEI----------SGKYDTWIMNPP  116 (197)
T ss_dssp             EEEECCGGGC----------CCCEEEEEECCC
T ss_pred             cEEEEehhhc----------CCcceEEEeCcc
Confidence            8999998552          478999999976

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=2e-11  Score=96.00  Aligned_cols=125  Identities=13%  Similarity=0.130  Sum_probs=99.3

Q ss_pred             ccccCCCCHHHHHHHHHHHHH----cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc
Q 029414            4 LRAMMGTAPDAGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK   79 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~   79 (194)
                      ...++++++...+.|...+..    .+..+|||+.||+|.+++.+|+.   ..+|+++|.++++++.|+++...++.. |
T Consensus       186 p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~-n  261 (358)
T d1uwva2         186 PRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-N  261 (358)
T ss_dssp             SSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-S
T ss_pred             CchhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhcccc-c
Confidence            456899999988888765542    25678999999999999999986   459999999999999999999999987 8


Q ss_pred             EEEEecchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           80 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        80 v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++++.++..+.+.....   ...+||+|++|++.......++.+.+. +|.-++.++
T Consensus       262 ~~~~~~~~~~~~~~~~~---~~~~~d~vilDPPR~G~~~~~~~l~~~-~~~~ivYVS  314 (358)
T d1uwva2         262 VTFYHENLEEDVTKQPW---AKNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYVS  314 (358)
T ss_dssp             EEEEECCTTSCCSSSGG---GTTCCSEEEECCCTTCCHHHHHHHHHH-CCSEEEEEE
T ss_pred             ceeeecchhhhhhhhhh---hhccCceEEeCCCCccHHHHHHHHHHc-CCCEEEEEe
Confidence            99999998775433221   146799999999976666777776553 666666664

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.5e-12  Score=96.47  Aligned_cols=115  Identities=22%  Similarity=0.041  Sum_probs=75.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEE-------ecchH--H-HHHHH-
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI-------ESEAL--S-VLDQL-   94 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~-------~~d~~--~-~~~~~-   94 (194)
                      ++.+|||+|||+|..+..++...  ..+|+++|+++.+++.|++++............       .+...  . ..... 
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            45689999999999888777642  347999999999999999998765532110000       00000  0 00000 


Q ss_pred             ---------------hhcCCCCCceeEEEEeCC-------ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414           95 ---------------LKYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        95 ---------------~~~~~~~~~fD~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                                     .......++||+|++...       ..++..+++.+.++|||||.+++.+....+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~  198 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP  198 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccc
Confidence                           000012468999998654       235667899999999999999998765433

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.5e-11  Score=90.98  Aligned_cols=83  Identities=17%  Similarity=0.271  Sum_probs=68.1

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH-HHHhhcCCCCCcee
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-DQLLKYSENEGSFD  105 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~~~~fD  105 (194)
                      ..++||+|||+|..++.+|...+ +.+++++|+++++++.|+++++.+++.+++.+.+.+....+ ..+..  ...++||
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~--~~~~~fD  138 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE--ESEIIYD  138 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT--CCSCCBS
T ss_pred             cceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhh--cccCcee
Confidence            45899999999999999999887 89999999999999999999999999999999887654422 11111  1245799


Q ss_pred             EEEEeCC
Q 029414          106 YAFVDAD  112 (194)
Q Consensus       106 ~i~id~~  112 (194)
                      +|+++++
T Consensus       139 ~ivsNPP  145 (250)
T d2h00a1         139 FCMCNPP  145 (250)
T ss_dssp             EEEECCC
T ss_pred             EEEecCc
Confidence            9999876

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.23  E-value=9.2e-11  Score=90.58  Aligned_cols=125  Identities=21%  Similarity=0.239  Sum_probs=98.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      +.+......+...++...++.+|||+++|.|.=|..++......+.+++.|.++..+...++++.+.+.. ++.+...|+
T Consensus        98 ~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~  176 (313)
T d1ixka_          98 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSS  176 (313)
T ss_dssp             EEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCG
T ss_pred             EEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-ccccccccc
Confidence            3344445555555666667889999999999999999988876799999999999999999999999986 788888887


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCCc-------------------------cccHHHHHHHHhcccCCeEEEEecccc
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDADK-------------------------DNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~~-------------------------~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      ... +..      ...||.|++|++.                         ......+..+++++||||.||...+..
T Consensus       177 ~~~-~~~------~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         177 LHI-GEL------NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             GGG-GGG------CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccc-ccc------cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence            654 222      4789999999651                         112456788889999999999987654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.4e-11  Score=93.03  Aligned_cols=114  Identities=15%  Similarity=0.022  Sum_probs=73.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc--------------------------
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK--------------------------   79 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~--------------------------   79 (194)
                      ++.++||+|||+|..++..+...  ..+|+++|+++.+++.+++++......-+                          
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            46799999999998776555432  34899999999999999998764332100                          


Q ss_pred             ---EEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-------ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414           80 ---INFIESEALSVLDQLLKYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        80 ---v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                         ..+...|....-+ +.......++||+|++-..       ..++..+++++.++|||||++++.+.....
T Consensus       132 ~~~~~~~~~Dv~~~~~-~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~  203 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQP-LGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES  203 (263)
T ss_dssp             HHEEEEECCCTTSSST-TCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC
T ss_pred             hhhhccccccccCCCc-cccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCc
Confidence               0111112111000 0000012357999987643       235678899999999999999997765543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=1.4e-10  Score=84.14  Aligned_cols=101  Identities=14%  Similarity=0.126  Sum_probs=87.4

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      .++++++|+|||.|.-++.+|...| +.+++.+|.+.......++.....++. |++++++++++...        ..+|
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~--------~~~f  133 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPS--------EPPF  133 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCC--------CSCE
T ss_pred             hcCCceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhcc--------cccc
Confidence            3678999999999999999999887 899999999999999999999999986 89999999876421        3579


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |+|.+.+ .......++.+.++++++|.+++-
T Consensus       134 D~V~sRA-~~~~~~ll~~~~~~l~~~g~~~~~  164 (207)
T d1jsxa_         134 DGVISRA-FASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             EEEECSC-SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             ceehhhh-hcCHHHHHHHHHHhcCCCcEEEEE
Confidence            9988765 456677889999999999999984

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.06  E-value=1.3e-09  Score=85.83  Aligned_cols=110  Identities=18%  Similarity=0.192  Sum_probs=91.0

Q ss_pred             HHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCC--------------cEEEEecc
Q 029414           21 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH--------------KINFIESE   86 (194)
Q Consensus        21 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--------------~v~~~~~d   86 (194)
                      +++..++.+|||..||+|..++..|...+ ..+|++.|+++++++.+++|++.++..+              .+.+.+.|
T Consensus        40 ~~~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~D  118 (375)
T d2dula1          40 LLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDD  118 (375)
T ss_dssp             HHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESC
T ss_pred             HHHHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhh
Confidence            34455889999999999999998887765 6799999999999999999999887542              46788889


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +...+...      ...||+|.+|+ ......+++.+.+.++.||+|.+..+
T Consensus       119 a~~~~~~~------~~~fDvIDiDP-fGs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         119 ANRLMAER------HRYFHFIDLDP-FGSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HHHHHHHS------TTCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhhhhHhh------cCcCCcccCCC-CCCcHHHHHHHHHHhccCCEEEEEec
Confidence            87776553      46799999997 44567899999999999999998543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.04  E-value=1.2e-09  Score=80.63  Aligned_cols=104  Identities=15%  Similarity=0.189  Sum_probs=87.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ...+++|+|||.|.-++.+|...| +.+++.+|.+.......+......++. ++.++++++++.....    ...++||
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~----~~~~~~D  143 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRK----DVRESYD  143 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCT----TTTTCEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccc----cccccce
Confidence            457899999999999999999887 899999999999999999999999997 8999999987653221    1136899


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +|.+.+. .....+++.+.+++++||.+++-
T Consensus       144 ~v~sRAv-a~l~~ll~~~~~~l~~~g~~i~~  173 (239)
T d1xdza_         144 IVTARAV-ARLSVLSELCLPLVKKNGLFVAL  173 (239)
T ss_dssp             EEEEECC-SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEEhhh-hCHHHHHHHHhhhcccCCEEEEE
Confidence            9998764 46677889999999999999984

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=9e-10  Score=84.19  Aligned_cols=120  Identities=18%  Similarity=0.155  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414           15 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        15 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      ..+...++...++.+|||+++|.|.-|..+|..+...++++++|+++..+...++++++.++. ++.+...|+....+..
T Consensus        83 S~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~  161 (293)
T d2b9ea1          83 SCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSD  161 (293)
T ss_dssp             GGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTC
T ss_pred             ccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccc
Confidence            334444555667889999999999999999988766789999999999999999999999987 8999998886643221


Q ss_pred             hhcCCCCCceeEEEEeCCccc---------------------------cHHHHHHHHhcccCCeEEEEecccc
Q 029414           95 LKYSENEGSFDYAFVDADKDN---------------------------YCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~~~---------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      .    ..+.||.|++|++.+.                           ....+..++ .++|||.||......
T Consensus       162 ~----~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl  229 (293)
T d2b9ea1         162 P----RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL  229 (293)
T ss_dssp             G----GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred             c----ccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence            1    1367999999965100                           012334444 479999999876653

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.95  E-value=8.3e-09  Score=76.68  Aligned_cols=97  Identities=13%  Similarity=0.113  Sum_probs=76.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      +..+|||||||+|..+..+++.+| +.+++..|. |+.+       +.....++++++.+|..+.          .+..|
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi-------~~~~~~~ri~~~~gd~~~~----------~p~~D  141 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVI-------ENAPPLSGIEHVGGDMFAS----------VPQGD  141 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHH-------TTCCCCTTEEEEECCTTTC----------CCCEE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecc-hhhh-------hccCCCCCeEEecCCcccc----------cccce
Confidence            357999999999999999999997 899999998 3332       3344457999999998542          24569


Q ss_pred             EEEEeCC-----ccccHHHHHHHHhcccCCeEEEEeccccc
Q 029414          106 YAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWG  141 (194)
Q Consensus       106 ~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  141 (194)
                      ++++...     .++....++.+.+.|+|||.|++.+...+
T Consensus       142 ~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~  182 (244)
T d1fp1d2         142 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP  182 (244)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             EEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEec
Confidence            9988754     34456789999999999999999876643

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.93  E-value=3.1e-09  Score=78.52  Aligned_cols=104  Identities=13%  Similarity=0.097  Sum_probs=73.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      +..+......+...+...+.++|||||||+|..|..++..   ..+++++|+|+..++.+++++...   ++++++++|+
T Consensus         3 FL~d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~   76 (235)
T d1qama_           3 FITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDI   76 (235)
T ss_dssp             BCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCG
T ss_pred             CcCCHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhcc---cchhhhhhhh
Confidence            4455555555555555567899999999999999999987   459999999999999999876433   4899999999


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHH
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  124 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~  124 (194)
                      .+.-  +.     ......|+.+-+..-....+..+.
T Consensus        77 l~~~--~~-----~~~~~~vv~NLPYnIss~il~~ll  106 (235)
T d1qama_          77 LQFK--FP-----KNQSYKIFGNIPYNISTDIIRKIV  106 (235)
T ss_dssp             GGCC--CC-----SSCCCEEEEECCGGGHHHHHHHHH
T ss_pred             hhcc--cc-----ccccceeeeeehhhhhHHHHHHHH
Confidence            8751  10     122334555555444445555554

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.86  E-value=1.4e-08  Score=75.39  Aligned_cols=96  Identities=8%  Similarity=0.125  Sum_probs=74.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ..++|||||+|+|..+..+++.+| +.+++..|. |+.+       +..+..++++++.+|..+.          ...+|
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi-------~~~~~~~rv~~~~gD~f~~----------~p~aD  140 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVV-------ENLSGSNNLTYVGGDMFTS----------IPNAD  140 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHH-------TTCCCBTTEEEEECCTTTC----------CCCCS
T ss_pred             CceEEEEecCCccHHHHHHHHhCC-CCeEEEecC-HHHH-------HhCcccCceEEEecCcccC----------CCCCc
Confidence            457899999999999999999998 899999998 3333       3345567999999998652          25689


Q ss_pred             EEEEeCC-----ccccHHHHHHHHhcccCC---eEEEEecccc
Q 029414          106 YAFVDAD-----KDNYCNYHERLMKLLKVG---GIAVYDNTLW  140 (194)
Q Consensus       106 ~i~id~~-----~~~~~~~~~~~~~~L~~g---G~lv~~~~~~  140 (194)
                      ++++...     .+.....++.+.+.|+||   |.+++.+...
T Consensus       141 ~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~  183 (244)
T d1fp2a2         141 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI  183 (244)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred             EEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeec
Confidence            9988654     344567899999999998   6677765544

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.6e-08  Score=76.23  Aligned_cols=106  Identities=12%  Similarity=0.065  Sum_probs=79.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      +.+++.....+...+...+...|||||+|.|..|..++..   +.+++++|+|+..++..++.+.......+++++.+|+
T Consensus         3 FL~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~   79 (278)
T d1zq9a1           3 ILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV   79 (278)
T ss_dssp             EECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT
T ss_pred             CcCCHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHH
Confidence            4455666666656565666789999999999999999987   4599999999999999999997766557999999999


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHHh
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK  125 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~  125 (194)
                      .+.  .       .+.++.|+.+-+..-....+..+..
T Consensus        80 l~~--~-------~~~~~~vV~NLPY~Iss~il~~~~~  108 (278)
T d1zq9a1          80 LKT--D-------LPFFDTCVANLPYQISSPFVFKLLL  108 (278)
T ss_dssp             TTS--C-------CCCCSEEEEECCGGGHHHHHHHHHH
T ss_pred             hhh--h-------hhhhhhhhcchHHHHHHHHHHHHHh
Confidence            764  1       2446677776665444555555443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.82  E-value=3.7e-09  Score=77.04  Aligned_cols=108  Identities=18%  Similarity=0.229  Sum_probs=81.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      +-+...++|..++...++.+|||.|||+|.++..+.+.......++++|+++..+..          ..+..++.+|...
T Consensus         3 TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~   72 (223)
T d2ih2a1           3 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLL   72 (223)
T ss_dssp             CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhc
Confidence            345677888888877788999999999999988888776657889999999876543          2356778888755


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCcc--------------------------------ccHHHHHHHHhcccCCeEEEE
Q 029414           90 VLDQLLKYSENEGSFDYAFVDADKD--------------------------------NYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~~~--------------------------------~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ..        ....||+++.+.+..                                -+..+++.+++.|++||.+++
T Consensus        73 ~~--------~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~  142 (223)
T d2ih2a1          73 WE--------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  142 (223)
T ss_dssp             CC--------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cc--------cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence            31        146899999885410                                124567888999999999877

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.79  E-value=8.5e-09  Score=79.79  Aligned_cols=118  Identities=18%  Similarity=0.181  Sum_probs=83.2

Q ss_pred             cCCCCHHHHHHHHHHH----HHcCCCeEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCcchHHhHHHHHHHcCCCC
Q 029414            7 MMGTAPDAGQLMAMLL----RLVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGVDH   78 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~----~~~~~~~vLeiG~G~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~   78 (194)
                      +++..+ ...+|..++    ...++.+|||.+||+|.....+...+.    ...+++++|+++.++..|+.+....+.  
T Consensus        95 ~~TP~~-i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--  171 (328)
T d2f8la1          95 QMTPDS-IGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--  171 (328)
T ss_dssp             CCCCHH-HHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--
T ss_pred             EECcHH-HHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--
Confidence            344433 444444443    234556899999999999888765432    245899999999999999998887764  


Q ss_pred             cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc---------------------ccHHHHHHHHhcccCCeEEEE
Q 029414           79 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---------------------NYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        79 ~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~---------------------~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      +..+.++|.....        ...+||+|+.+++..                     .+..+++.++++|+|||.+++
T Consensus       172 ~~~~~~~d~~~~~--------~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~  241 (328)
T d2f8la1         172 KMTLLHQDGLANL--------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF  241 (328)
T ss_dssp             CCEEEESCTTSCC--------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             hhhhhcccccccc--------ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence            4567777764421        146899999997621                     123478999999999997665

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=1.4e-08  Score=75.71  Aligned_cols=108  Identities=12%  Similarity=0.009  Sum_probs=74.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414            8 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus         8 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      +..++.....+...+...+++.|||||+|.|..|..+++.   ..+++++|+|+..++..++.+..   .++++++.+|+
T Consensus         3 FL~d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~   76 (252)
T d1qyra_           3 FLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDA   76 (252)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCG
T ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhhh---ccchhHHhhhh
Confidence            4455556666666666667889999999999999999986   45899999999999988875432   25899999999


Q ss_pred             HHH-HHHHhhcCCCCCceeEEEEeCCccccHHHHHHHH
Q 029414           88 LSV-LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  124 (194)
Q Consensus        88 ~~~-~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~  124 (194)
                      .++ +..+...   .+..-.|+.+-+..-....+..+.
T Consensus        77 l~~~~~~~~~~---~~~~~~vvgNlPY~Iss~Il~~l~  111 (252)
T d1qyra_          77 MTFNFGELAEK---MGQPLRVFGNLPYNISTPLMFHLF  111 (252)
T ss_dssp             GGCCHHHHHHH---HTSCEEEEEECCTTTHHHHHHHHH
T ss_pred             hhhcccccccc---cCCCeEEEecchHHHHHHHHHHhc
Confidence            873 2222110   122335666655444445555543

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.75  E-value=1.8e-08  Score=74.81  Aligned_cols=95  Identities=13%  Similarity=0.147  Sum_probs=72.0

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      ..+|||||||+|..+..+++.+| +.+++..|..+ .++       .....+++++..+|..+..          +..|.
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~-vi~-------~~~~~~r~~~~~~d~~~~~----------P~ad~  142 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYP-TIKGINFDLPH-VIE-------DAPSYPGVEHVGGDMFVSI----------PKADA  142 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECTT-TTT-------TCCCCTTEEEEECCTTTCC----------CCCSC
T ss_pred             CcEEEEecCCCcHHHHHHHHHCC-CCeEEEcccHH-hhh-------hcccCCceEEecccccccC----------CCcce
Confidence            46899999999999999999998 99999999854 332       2334468999999986521          23455


Q ss_pred             EEEeCC-----ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414          107 AFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus       107 i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      .++...     .++....++++.+.|+|||.+++.+...
T Consensus       143 ~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~  181 (243)
T d1kyza2         143 VFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECIL  181 (243)
T ss_dssp             EECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEE
T ss_pred             EEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEe
Confidence            554332     3456788999999999999988877654

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.75  E-value=7.9e-10  Score=82.26  Aligned_cols=107  Identities=14%  Similarity=0.136  Sum_probs=76.6

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe
Q 029414            5 RAMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   84 (194)
Q Consensus         5 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~   84 (194)
                      ++++..++.....+...+...+.++|||||||+|..|..++..   +.+++++|+|+.+++.+++++..   .+++++++
T Consensus         8 GQnFL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~   81 (245)
T d1yuba_           8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLKL---NTRVTLIH   81 (245)
T ss_dssp             CCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTTT---CSEEEECC
T ss_pred             CCcccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhhh---ccchhhhh
Confidence            4556666666666666666667789999999999999999987   45999999999999988876642   24899999


Q ss_pred             cchHHHHHHHhhcCCCCCceeEEEEeCCccccHHHHHHHH
Q 029414           85 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  124 (194)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~~~~~  124 (194)
                      +|+.+.  .+     ....++.|+..-+..-....+..+.
T Consensus        82 ~D~l~~--~~-----~~~~~~~vv~NLPY~Ist~il~~~l  114 (245)
T d1yuba_          82 QDILQF--QF-----PNKQRYKIVGNIPYHLSTQIIKKVV  114 (245)
T ss_dssp             SCCTTT--TC-----CCSSEEEEEEECCSSSCHHHHHHHH
T ss_pred             hhhhcc--cc-----ccceeeeEeeeeehhhhHHHHHHHh
Confidence            999875  22     1245666666655444444444433

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.73  E-value=7.7e-08  Score=68.12  Aligned_cols=106  Identities=10%  Similarity=0.041  Sum_probs=80.6

Q ss_pred             HHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           23 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ...++..++|..+|.|..+..++..   +++|+++|.+++++..+++.     ..+++.+++++..++...+...  ..+
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~--~~~   84 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAAL--GVE   84 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHT--TCS
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHc--CCC
Confidence            3557789999999999999999884   67999999999999888764     2358999999877653332211  236


Q ss_pred             ceeEEEEeCCcc------------ccHHHHHHHHhcccCCeEEEEecc
Q 029414          103 SFDYAFVDADKD------------NYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       103 ~fD~i~id~~~~------------~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .+|.|++|-...            .....++.....|++||.+++-..
T Consensus        85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence            799999997532            223457788899999999998543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.70  E-value=1.7e-08  Score=72.31  Aligned_cols=114  Identities=21%  Similarity=0.210  Sum_probs=70.0

Q ss_pred             HHHHHH-HHcCCCeEEEEcccccHHHHHHHhhC----C---CCCEEEEEeCCcchHHhHHHHH-----------------
Q 029414           17 LMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTI----P---EDGQITAIDVNRETYEIGLPII-----------------   71 (194)
Q Consensus        17 ~l~~l~-~~~~~~~vLeiG~G~G~~~~~la~~~----~---~~~~v~~iD~~~~~~~~a~~~~-----------------   71 (194)
                      .|...+ ...++-+|+++||++|.-+..+|..+    .   ...+++++|+++..++.|++..                 
T Consensus        14 ~L~~~~~~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~y   93 (193)
T d1af7a2          14 ILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRY   93 (193)
T ss_dssp             HHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHH
T ss_pred             HHHHHHhccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhc
Confidence            344433 33355699999999998665554322    1   1347999999999999887322                 


Q ss_pred             -HHcCCCCc------------EEEEecchHHHHHHHhhcCCCCCceeEEEEeCC-----ccccHHHHHHHHhcccCCeEE
Q 029414           72 -KKAGVDHK------------INFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIA  133 (194)
Q Consensus        72 -~~~~~~~~------------v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~l  133 (194)
                       ...+....            +.+...+.....+      ...++||+|+|-..     .+....+++.+.+.|+|||+|
T Consensus        94 f~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L  167 (193)
T d1af7a2          94 FMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQY------NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLL  167 (193)
T ss_dssp             EEECCTTSCSEEEECHHHHTTEEEEECCTTCSSC------CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEE
T ss_pred             eeecCCCccceeehHHHHHHHHHHhhhhcccccc------CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEE
Confidence             11111101            1111111111000      11367999999865     345568899999999999999


Q ss_pred             EEe
Q 029414          134 VYD  136 (194)
Q Consensus       134 v~~  136 (194)
                      ++-
T Consensus       168 ~lG  170 (193)
T d1af7a2         168 FAG  170 (193)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            984

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=6.5e-07  Score=63.11  Aligned_cols=99  Identities=17%  Similarity=0.176  Sum_probs=71.2

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH--HHHhhcCCCCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSENEG  102 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~  102 (194)
                      .+..+|||+||+.|.++..++......++++++|..+-.           .. +++.++++|..+..  ...... ....
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i-~~~~~~~~d~~~~~~~~~~~~~-~~~~   87 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PI-VGVDFLQGDFRDELVMKALLER-VGDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CC-TTEEEEESCTTSHHHHHHHHHH-HTTC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------cc-CCceEeecccccchhhhhhhhh-ccCc
Confidence            356799999999999999999887767999999987621           22 47889998875421  111110 1246


Q ss_pred             ceeEEEEeCCcc--------------ccHHHHHHHHhcccCCeEEEEe
Q 029414          103 SFDYAFVDADKD--------------NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       103 ~fD~i~id~~~~--------------~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++|+|+.|+...              -....+..+.+.|++||.+|+-
T Consensus        88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K  135 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence            899999997511              1134466677999999999995

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.46  E-value=9.9e-08  Score=70.59  Aligned_cols=76  Identities=9%  Similarity=0.142  Sum_probs=63.2

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC--------CCcEEEEecchHHHHHHHhhcCC
Q 029414           28 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------DHKINFIESEALSVLDQLLKYSE   99 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------~~~v~~~~~d~~~~~~~~~~~~~   99 (194)
                      .+|||..+|.|..+..+|..   +++|+++|.+|......++.+++...        ..+++++++|+.+++...     
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~-----  161 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----  161 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----
T ss_pred             CEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc-----
Confidence            48999999999999999987   57999999999888777777655431        137999999999987764     


Q ss_pred             CCCceeEEEEeCC
Q 029414          100 NEGSFDYAFVDAD  112 (194)
Q Consensus       100 ~~~~fD~i~id~~  112 (194)
                       .++||+||+|+.
T Consensus       162 -~~~~DvIYlDPM  173 (250)
T d2oyra1         162 -TPRPQVVYLDPM  173 (250)
T ss_dssp             -SSCCSEEEECCC
T ss_pred             -CCCCCEEEECCC
Confidence             467999999986

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.39  E-value=3.1e-07  Score=73.31  Aligned_cols=121  Identities=16%  Similarity=0.121  Sum_probs=90.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCC------------CCEEEEEeCCcchHHhHHHHHHH
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE------------DGQITAIDVNRETYEIGLPIIKK   73 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~------------~~~v~~iD~~~~~~~~a~~~~~~   73 (194)
                      .+++. +....+|..++......+|+|..||+|.+.....+.+..            ...+.++|+++.....|+.++.-
T Consensus       143 ~f~TP-~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l  221 (425)
T d2okca1         143 QYFTP-RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  221 (425)
T ss_dssp             GGCCC-HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             hhccc-hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence            34444 556677777777667789999999999998887765431            12489999999999999998887


Q ss_pred             cCCC-CcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--------------------ccHHHHHHHHhcccCCeE
Q 029414           74 AGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------------------NYCNYHERLMKLLKVGGI  132 (194)
Q Consensus        74 ~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--------------------~~~~~~~~~~~~L~~gG~  132 (194)
                      .+.. ++..+..+|..+..        ...+||+|+.+++..                    ....++..+.++|++||.
T Consensus       222 ~g~~~~~~~i~~~d~l~~~--------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~  293 (425)
T d2okca1         222 HGIGTDRSPIVCEDSLEKE--------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGR  293 (425)
T ss_dssp             TTCCSSCCSEEECCTTTSC--------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred             cCCccccceeecCchhhhh--------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCe
Confidence            7765 34567778875421        246899999987610                    124689999999999997


Q ss_pred             EEE
Q 029414          133 AVY  135 (194)
Q Consensus       133 lv~  135 (194)
                      +++
T Consensus       294 ~~i  296 (425)
T d2okca1         294 AAV  296 (425)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            766

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=4.6e-06  Score=68.11  Aligned_cols=123  Identities=10%  Similarity=0.020  Sum_probs=85.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCC-----------------CCEEEEEeCCcchHHhHH
Q 029414            6 AMMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-----------------DGQITAIDVNRETYEIGL   68 (194)
Q Consensus         6 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-----------------~~~v~~iD~~~~~~~~a~   68 (194)
                      .++++ +.+..+|..++......+|+|-.||+|.+.......+..                 ...++++|+++.....++
T Consensus       145 qfyTP-~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         145 QYFTP-RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             CCCCC-HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             hhccc-cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            34444 456677777777667789999999999988776554321                 125899999999999999


Q ss_pred             HHHHHcCCCCc----EEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc-----------------ccHHHHHHHHhcc
Q 029414           69 PIIKKAGVDHK----INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLL  127 (194)
Q Consensus        69 ~~~~~~~~~~~----v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~-----------------~~~~~~~~~~~~L  127 (194)
                      -++--.+...+    -.+..++....-..      ...+||+|+.+++..                 ....++..+++.|
T Consensus       224 ~nl~l~~~~~~i~~~~~~~~~~~l~~d~~------~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L  297 (524)
T d2ar0a1         224 MNCLLHDIEGNLDHGGAIRLGNTLGSDGE------NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL  297 (524)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHH------TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHE
T ss_pred             HHHHhhcccccccccchhhhhhhhhhccc------ccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhc
Confidence            88876665422    23444554432111      146899999987521                 1245899999999


Q ss_pred             cCCeEEEE
Q 029414          128 KVGGIAVY  135 (194)
Q Consensus       128 ~~gG~lv~  135 (194)
                      ++||.+.+
T Consensus       298 k~gGr~ai  305 (524)
T d2ar0a1         298 HPGGRAAV  305 (524)
T ss_dssp             EEEEEEEE
T ss_pred             cccCcEEE
Confidence            99998766

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.96  E-value=9.4e-06  Score=56.61  Aligned_cols=105  Identities=17%  Similarity=0.171  Sum_probs=69.6

Q ss_pred             HHHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           22 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      +...++.+|+-+|+|. |..++.+|+... ..+|+++|.+++.++.+++.    |...-+.....+..+.+.++.    .
T Consensus        23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~l----Ga~~~i~~~~~~~~~~v~~~t----~   93 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKFY----GATDILNYKNGHIEDQVMKLT----N   93 (174)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHHH----TCSEEECGGGSCHHHHHHHHT----T
T ss_pred             hCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHhh----CccccccccchhHHHHHHHHh----h
Confidence            4455778999999986 778888888754 35799999999888887653    532112122223333333331    1


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ...+|+||-....+   ..++.+++.++|+|.+++-..
T Consensus        94 g~G~D~vid~~g~~---~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          94 GKGVDRVIMAGGGS---ETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             TSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCC
T ss_pred             ccCcceEEEccCCH---HHHHHHHHHHhcCCEEEEEee
Confidence            35699877544322   346778899999999998543

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=1.4e-05  Score=61.13  Aligned_cols=82  Identities=9%  Similarity=0.005  Sum_probs=63.3

Q ss_pred             ccccCCCCHHHHHHHHHHHHHc------CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC
Q 029414            4 LRAMMGTAPDAGQLMAMLLRLV------NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD   77 (194)
Q Consensus         4 ~~~~~~~~~~~~~~l~~l~~~~------~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~   77 (194)
                      .+.++.+++...+.+...+...      ...+|||||+|.|..|..++.... ..+++++|.++...+..++.+.    .
T Consensus        15 ~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~----~   89 (322)
T d1i4wa_          15 YGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE----G   89 (322)
T ss_dssp             GGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT----T
T ss_pred             ccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc----C
Confidence            3456677777777766665543      356899999999999999987632 3589999999999998887753    2


Q ss_pred             CcEEEEecchHHH
Q 029414           78 HKINFIESEALSV   90 (194)
Q Consensus        78 ~~v~~~~~d~~~~   90 (194)
                      ++++++++|+..+
T Consensus        90 ~~~~ii~~D~l~~  102 (322)
T d1i4wa_          90 SPLQILKRDPYDW  102 (322)
T ss_dssp             SSCEEECSCTTCH
T ss_pred             CCcEEEeCchhhc
Confidence            4799999998764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.90  E-value=1.6e-05  Score=56.39  Aligned_cols=106  Identities=15%  Similarity=0.121  Sum_probs=72.7

Q ss_pred             HHHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEE--EecchHHHHHHHhhcC
Q 029414           22 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYS   98 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~--~~~d~~~~~~~~~~~~   98 (194)
                      +...++.+||-+|||. |..+..+|+... ..+|+++|.+++.++.+++.    +..  ..+  ...+..+...++.   
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~----Ga~--~~~~~~~~~~~~~i~~~t---   90 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQ----GFE--IADLSLDTPLHEQIAALL---   90 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCE--EEETTSSSCHHHHHHHHH---
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhc----ccc--EEEeCCCcCHHHHHHHHh---
Confidence            4566788999999998 667788888765 67999999999999887754    422  111  1234434333332   


Q ss_pred             CCCCceeEEEEeCCc------------cccHHHHHHHHhcccCCeEEEEecc
Q 029414           99 ENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus        99 ~~~~~fD~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                       ....+|.++-....            ......++.+.+.++|+|.+++-.+
T Consensus        91 -~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          91 -GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             -SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             -CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence             13579988743221            1234678999999999999998654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.88  E-value=1.6e-05  Score=55.68  Aligned_cols=106  Identities=14%  Similarity=0.146  Sum_probs=67.1

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ..++++||-+|+|. |..+..+|+... ..+|+++|.+++.++.+++.    |...-+.....+..+........ ....
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~i~~~-~~~~   99 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEEI----GADLTLNRRETSVEERRKAIMDI-THGR   99 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHHT----TCSEEEETTTSCHHHHHHHHHHH-TTTS
T ss_pred             CCCCCEEEEECCCccchhheecccccc-cccccccccccccccccccc----cceEEEeccccchHHHHHHHHHh-hCCC
Confidence            44678999999984 678888888864 34899999999998877653    43211111223333332222111 1234


Q ss_pred             ceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          103 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       103 ~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      .+|+||-....   ...++.+.+.+++||.+++-..
T Consensus       100 g~Dvvid~vG~---~~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2         100 GADFILEATGD---SRALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             CEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CceEEeecCCc---hhHHHHHHHHhcCCCEEEEEee
Confidence            69987744322   2346778899999999987543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.80  E-value=5.4e-05  Score=52.51  Aligned_cols=103  Identities=18%  Similarity=0.273  Sum_probs=67.7

Q ss_pred             HHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           23 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      +..++.+||-+|+|. |..+..+|+... ..+++.+|.+++.++.+++.    +...-+.....|..+...++.     .
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~~----Ga~~~i~~~~~~~~~~i~~~t-----~   94 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQL----GATHVINSKTQDPVAAIKEIT-----D   94 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT-----T
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHHc----CCeEEEeCCCcCHHHHHHHHc-----C
Confidence            345678999999975 346667777765 56888999999888887764    533111112223334333331     3


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +.+|+|+-...   ....++.+.+.++|+|.+++-..
T Consensus        95 gg~D~vid~~G---~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          95 GGVNFALESTG---SPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             SCEEEEEECSC---CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCcEEEEcCC---cHHHHHHHHhcccCceEEEEEee
Confidence            57998876542   33567888999999999998543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.00011  Score=50.66  Aligned_cols=104  Identities=14%  Similarity=0.089  Sum_probs=67.0

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-cchHHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~  101 (194)
                      ..++.+|+-+|+|. |..+..+++... ..+|+++|.+++.++.+++.    |.. .+.... .+..+....+...  ..
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~----Ga~-~~~~~~~~~~~~~~~~~~~~--~g   95 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEI----GAD-LVLQISKESPQEIARKVEGQ--LG   95 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCS-EEEECSSCCHHHHHHHHHHH--HT
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHh----CCc-cccccccccccccccccccc--CC
Confidence            34578999999976 456777777754 45899999999998887753    533 222222 2332222221110  13


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ..+|+++-...   ....++.+.+.+++||.+++-..
T Consensus        96 ~g~Dvvid~~G---~~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          96 CKPEVTIECTG---AEASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             SCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCceEEEeccC---CchhHHHHHHHhcCCCEEEEEec
Confidence            57998775432   24567889999999999998543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.76  E-value=8.3e-06  Score=59.64  Aligned_cols=117  Identities=9%  Similarity=0.029  Sum_probs=69.8

Q ss_pred             CCCHHHHHHHHHHHH--HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc
Q 029414            9 GTAPDAGQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   86 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d   86 (194)
                      ..++....+....-+  ..+..+|+|+|||.|.++..++...+ ...+.++++--+..+.-. .....+. +-+++...+
T Consensus        47 ~~SR~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~iG~d~~e~P~-~~~~~~~-ni~~~~~~~  123 (257)
T d2p41a1          47 AVSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTKGGPGHEEPI-PMSTYGW-NLVRLQSGV  123 (257)
T ss_dssp             CSSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCCC-CCCSTTG-GGEEEECSC
T ss_pred             CcchHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcC-CCceeEEEecCccccCCc-ccccccc-ccccchhhh
Confidence            345555555443333  22456899999999999999998753 567888877322111000 0011111 134555444


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCCc---------cccHHHHHHHHhcccCCeEEEEe
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDADK---------DNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~~---------~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ....+        ..+..|.|++|...         ......++.+.+.|+|||-+++-
T Consensus       124 dv~~l--------~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         124 DVFFI--------PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             CTTTS--------CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             hHHhc--------CCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence            32211        14689999999652         22346678888999999998873

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=2.8e-05  Score=53.71  Aligned_cols=100  Identities=20%  Similarity=0.097  Sum_probs=65.8

Q ss_pred             HHcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           23 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        23 ~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      ...++++|+-+|+| .|..+..+|+..  +.+++++|.+++.++.+++.    |.+  ..+...+..+.....      .
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~l----Ga~--~~i~~~~~~~~~~~~------~   89 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMKM----GAD--HYIATLEEGDWGEKY------F   89 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHH----TCS--EEEEGGGTSCHHHHS------C
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhcc----CCc--EEeeccchHHHHHhh------h
Confidence            34467899999998 567777788774  57999999999999887763    533  122212222333332      4


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      +.+|+++..... .....++.+.+.++|+|.+++-.
T Consensus        90 ~~~d~vi~~~~~-~~~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          90 DTFDLIVVCASS-LTDIDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             SCEEEEEECCSC-STTCCTTTGGGGEEEEEEEEECC
T ss_pred             cccceEEEEecC-CccchHHHHHHHhhccceEEEec
Confidence            679988753221 11112566789999999999854

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.68  E-value=0.00016  Score=49.53  Aligned_cols=101  Identities=14%  Similarity=0.146  Sum_probs=65.1

Q ss_pred             HHHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           22 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      +...++++|+-+|+|. |..+..+++..  +.+|+++|.+++.++.+++    .|...-+.....+..+.....      
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~~~------   90 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARK----LGASLTVNARQEDPVEAIQRD------   90 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH------
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhc----cCccccccccchhHHHHHHHh------
Confidence            4455678999999875 56777788775  5799999999988887764    353311222222333332222      


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ...+|.++.+...   ...++.+.+.|+++|.+++-.
T Consensus        91 ~~g~~~~i~~~~~---~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          91 IGGAHGVLVTAVS---NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             HSSEEEEEECCSC---HHHHHHHHTTEEEEEEEEECC
T ss_pred             hcCCccccccccc---chHHHHHHHHhcCCcEEEEEE
Confidence            2345555554432   345788999999999999853

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.56  E-value=0.00026  Score=49.04  Aligned_cols=101  Identities=20%  Similarity=0.266  Sum_probs=68.4

Q ss_pred             HcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc-h-HHHHHHHhhcCCC
Q 029414           24 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-A-LSVLDQLLKYSEN  100 (194)
Q Consensus        24 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~-~~~~~~~~~~~~~  100 (194)
                      ..++.+|+-+|||. |..++.+++... ..+|+.+|.+++.++.+++.    |...-+.....| . ........     
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~~-----   95 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKAL----GATDCLNPRELDKPVQDVITELT-----   95 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHHHHH-----
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHh----CCCcccCCccchhhhhhhHhhhh-----
Confidence            45678999999997 888889999875 56899999999988877763    433111111222 1 22222221     


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~  137 (194)
                      .+.+|++|-..   .....++.+.+.+++| |.+++-.
T Consensus        96 ~~G~d~vie~~---G~~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          96 AGGVDYSLDCA---GTAQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             TSCBSEEEESS---CCHHHHHHHHHTBCTTTCEEEECC
T ss_pred             cCCCcEEEEec---ccchHHHHHHHHhhcCCeEEEecC
Confidence            46799887543   2345688899999996 9998854

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.55  E-value=9.4e-05  Score=50.85  Aligned_cols=101  Identities=11%  Similarity=0.122  Sum_probs=66.5

Q ss_pred             HcCCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEec----chHHHHHHHhhcC
Q 029414           24 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES----EALSVLDQLLKYS   98 (194)
Q Consensus        24 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~----d~~~~~~~~~~~~   98 (194)
                      ..++.+||-+|+| .|..+..+|+..  +.+|+++|.+++.++.+++.    +.  ...+...    +..+....+... 
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~----ga--~~~~~~~~~~~~~~~~~~~~~~~-   94 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNC----GA--DVTLVVDPAKEEESSIIERIRSA-   94 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----TC--SEEEECCTTTSCHHHHHHHHHHH-
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHc----CC--cEEEeccccccccchhhhhhhcc-
Confidence            4467899999988 467777788875  57999999999998888764    32  2222221    112222222110 


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                       ....+|+++-..   .....++.+.+.++++|.+++-.
T Consensus        95 -~g~g~D~vid~~---g~~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2          95 -IGDLPNVTIDCS---GNEKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             -SSSCCSEEEECS---CCHHHHHHHHHHSCTTCEEEECS
T ss_pred             -cccCCceeeecC---CChHHHHHHHHHHhcCCceEEEe
Confidence             135789776543   23356788899999999999864

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.0001  Score=50.92  Aligned_cols=100  Identities=16%  Similarity=0.122  Sum_probs=66.1

Q ss_pred             HHcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           23 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        23 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      +..++++||-.|+  +.|..++.+|+..  +.++++++.+++..+.+++    .|...-+.....|..+.+....    .
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t----~   94 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV----G   94 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH----C
T ss_pred             CCCCCCEEEEEecccccccccccccccc--Ccccccccccccccccccc----cCcccccccccccHHHHhhhhh----c
Confidence            3446789999996  5677888889885  5789999988877766654    4544222222233434333322    2


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ...+|+|+-.. .   ...++.+.+.++|+|.++.-
T Consensus        95 ~~g~d~v~d~~-g---~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          95 EKGIDIIIEML-A---NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             TTCEEEEEESC-H---HHHHHHHHHHEEEEEEEEEC
T ss_pred             cCCceEEeecc-c---HHHHHHHHhccCCCCEEEEE
Confidence            46799777533 2   24678889999999999984

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.48  E-value=0.00027  Score=48.46  Aligned_cols=103  Identities=15%  Similarity=0.165  Sum_probs=73.1

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      +|.+|+-+|+|. |..++..|..+  +.+|+.+|.+++.++..+..+.     .+++....+.......+       ...
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~-------~~a   96 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAV-------AEA   96 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHH-------HTC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhh-------ccC
Confidence            588999999995 77888888886  5899999999999988777663     35667666665554444       468


Q ss_pred             eEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414          105 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus       105 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      |+|+.-..   ...+.-.-+...+.+|||.+||=-.+...|
T Consensus        97 DivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG  137 (168)
T d1pjca1          97 DLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGG  137 (168)
T ss_dssp             SEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCC
T ss_pred             cEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEeecCCCC
Confidence            99886543   222223346677999998887754444444

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.40  E-value=0.00026  Score=48.58  Aligned_cols=103  Identities=20%  Similarity=0.156  Sum_probs=65.6

Q ss_pred             HHcCCCeEEEEcc-c-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           23 RLVNAKKTIEIGV-F-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        23 ~~~~~~~vLeiG~-G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ...++++||-+|+ | .|..+..+++... ..+|+++|.+++..+.+++.    |....+..-..|..+...+..    .
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~----~   94 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRA----GADYVINASMQDPLAEIRRIT----E   94 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT----T
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHHc----CCceeeccCCcCHHHHHHHHh----h
Confidence            3456789999996 3 5566676777654 56999999999888887763    432111111122333322221    1


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+.||+++-..   .....++.+.+.++|||.+++-.
T Consensus        95 ~~~~d~vid~~---g~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          95 SKGVDAVIDLN---NSEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             TSCEEEEEESC---CCHHHHTTGGGGEEEEEEEEECC
T ss_pred             cccchhhhccc---ccchHHHhhhhhcccCCEEEEec
Confidence            35699777543   23455677889999999999864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.37  E-value=0.00039  Score=47.83  Aligned_cols=98  Identities=13%  Similarity=0.086  Sum_probs=63.9

Q ss_pred             cCCCeEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe--cchHHHHHHHhhcCCCC
Q 029414           25 VNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENE  101 (194)
Q Consensus        25 ~~~~~vLeiG~G~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~~~  101 (194)
                      .++.+||-+|+|.. ..+..+++... ..+++++|.+++.++.+++.    +..   .++.  .+..+...+..    ..
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~----ga~---~~i~~~~~~~~~~~~~~----~~   98 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERL----GAD---HVVDARRDPVKQVMELT----RG   98 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCHHHHHHHHT----TT
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhc----ccc---eeecCcccHHHHHHHhh----CC
Confidence            46789999999764 45566776654 56899999999888777753    422   2222  22222222221    23


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ..+|+++-...   ....++.+++.++++|.+++-.
T Consensus        99 ~g~d~vid~~g---~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2          99 RGVNVAMDFVG---SQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             CCEEEEEESSC---CHHHHHHGGGGEEEEEEEEECC
T ss_pred             CCceEEEEecC---cchHHHHHHHHHhCCCEEEEEe
Confidence            56998876542   2345788899999999999854

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.20  E-value=0.00061  Score=46.37  Aligned_cols=101  Identities=18%  Similarity=0.180  Sum_probs=65.1

Q ss_pred             HHHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           22 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ....++++||-.|+|. |..+..+++..  +.++++++.+++.++.+++    .|...-+.....|..+.+...      
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~------   90 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK------   90 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH------
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhcccc------
Confidence            3455678999999886 44566667764  5689999999988887765    353311111122344434433      


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ...+|.++.+..   ....++.+.+.++|+|.+++-.
T Consensus        91 ~~~~~~~v~~~~---~~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          91 VGGVHAAVVTAV---SKPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             HSSEEEEEESSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             cCCCceEEeecC---CHHHHHHHHHHhccCCceEecc
Confidence            244555666543   3456788999999999999854

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.18  E-value=0.0011  Score=45.57  Aligned_cols=104  Identities=13%  Similarity=0.197  Sum_probs=64.8

Q ss_pred             HHHcCCCeEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc--hHHHHHHHhhcC
Q 029414           22 LRLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE--ALSVLDQLLKYS   98 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~~~~~~   98 (194)
                      ....++++|+-+|+|.. ..+..+++... ..+|+++|.+++.++.+++.    |...-+.....|  ..+.....    
T Consensus        23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~l----Ga~~~i~~~~~d~~~~~~~~~~----   93 (174)
T d1p0fa2          23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIEL----GATECLNPKDYDKPIYEVICEK----   93 (174)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHHc----CCcEEEcCCCchhHHHHHHHHh----
Confidence            34556789999999864 46666777664 57899999999999988763    533222222223  22232222    


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhccc-CCeEEEEecc
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLK-VGGIAVYDNT  138 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~-~gG~lv~~~~  138 (194)
                       ..+.+|.++.....   ...++.+...++ ++|.+++-..
T Consensus        94 -~~~G~d~vid~~g~---~~~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2          94 -TNGGVDYAVECAGR---IETMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             -TTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             -cCCCCcEEEEcCCC---chHHHHHHHHHHHhcCceEEEEE
Confidence             14579988875432   344555666665 4688887543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.0017  Score=44.61  Aligned_cols=102  Identities=13%  Similarity=0.115  Sum_probs=65.7

Q ss_pred             HHcCCCeEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           23 RLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        23 ~~~~~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      +..++++||-.|++  .|..++.+|+..  +.+|++++.+++..+.+++.    |...-+.....|..+.+.++.    .
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~l----Ga~~vi~~~~~d~~~~v~~~t----~   94 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALKA----GAWQVINYREEDLVERLKEIT----G   94 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT----T
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHhc----CCeEEEECCCCCHHHHHHHHh----C
Confidence            34567899998665  456777888874  68999999999888877653    533112222234444433331    2


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ...+|+|+- .....   .++.+...++++|.+++...
T Consensus        95 g~g~d~v~d-~~g~~---~~~~~~~~l~~~G~~v~~g~  128 (179)
T d1qora2          95 GKKVRVVYD-SVGRD---TWERSLDCLQRRGLMVSFGN  128 (179)
T ss_dssp             TCCEEEEEE-CSCGG---GHHHHHHTEEEEEEEEECCC
T ss_pred             CCCeEEEEe-CccHH---HHHHHHHHHhcCCeeeeccc
Confidence            457896554 43332   35778899999999887543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.0047  Score=41.89  Aligned_cols=98  Identities=17%  Similarity=0.214  Sum_probs=64.9

Q ss_pred             HHHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           22 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ....++++|+-+|+|. |..+..+|+..  +.+++++|.+++..+.+++.    +..   .++.....+....      .
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~l----Gad---~~i~~~~~~~~~~------~   90 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAA------H   90 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHT------T
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhcc----CCc---EEEECchhhHHHH------h
Confidence            3455778999999874 66777788875  57888999998887766643    532   2232222222222      1


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      .+.+|.++-......   .++.+.+.++++|.+++-.
T Consensus        91 ~~~~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          91 LKSFDFILNTVAAPH---NLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             TTCEEEEEECCSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred             cCCCceeeeeeecch---hHHHHHHHHhcCCEEEEec
Confidence            467998876544333   2566789999999999854

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.97  E-value=0.0035  Score=43.11  Aligned_cols=103  Identities=15%  Similarity=0.181  Sum_probs=63.2

Q ss_pred             HcCCCeEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecch-HHHHHHHhhcCCCC
Q 029414           24 LVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSENE  101 (194)
Q Consensus        24 ~~~~~~vLeiG~G~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~~  101 (194)
                      ..++.+|+-+|+|.. ..++.+++... ..+|+++|.+++.++.|++.    |....+.....+. .+.......    .
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~----GA~~~in~~~~~~~~~~~~~~~~----g   97 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAV----GATECISPKDSTKPISEVLSEMT----G   97 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHHH----T
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhc----CCcEEECccccchHHHHHHHHhc----c
Confidence            456789999999864 46666777754 57999999999999998876    4321122122221 222222211    4


Q ss_pred             CceeEEEEeCCccccHHHHHHHHhcc-cCCeEEEEecc
Q 029414          102 GSFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVYDNT  138 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~~~~L-~~gG~lv~~~~  138 (194)
                      ..+|.++.....   ...++.....+ +.+|.+++-..
T Consensus        98 ~G~d~vi~~~g~---~~~~~~a~~~~~~~~G~~v~vG~  132 (176)
T d1d1ta2          98 NNVGYTFEVIGH---LETMIDALASCHMNYGTSVVVGV  132 (176)
T ss_dssp             SCCCEEEECSCC---HHHHHHHHTTSCTTTCEEEECSC
T ss_pred             ccceEEEEeCCc---hHHHHHHHHHhhcCCeEEEEEEc
Confidence            679988876532   23344444545 55589888544

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.95  E-value=0.00076  Score=46.57  Aligned_cols=100  Identities=15%  Similarity=0.075  Sum_probs=63.3

Q ss_pred             HHcCCCeEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           23 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        23 ~~~~~~~vLeiG--~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      +..++++||-.|  .+.|..++.+|+..  +.+++++..+++..+.++    +.+...-+.....|..+.+.+..    .
T Consensus        22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~----~~Ga~~vi~~~~~~~~~~v~~~t----~   91 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLS----RLGVEYVGDSRSVDFADEILELT----D   91 (183)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH----TTCCSEEEETTCSTHHHHHHHHT----T
T ss_pred             CCCCCCEEEEECCCCCcccccchhhccc--cccceeeecccccccccc----cccccccccCCccCHHHHHHHHh----C
Confidence            344567899877  45677888888875  578888887776666555    34543111112223334333331    1


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ...+|++|-...    ...++.+++.|+++|.++.-
T Consensus        92 ~~g~d~v~d~~g----~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          92 GYGVDVVLNSLA----GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             TCCEEEEEECCC----THHHHHHHHTEEEEEEEEEC
T ss_pred             CCCEEEEEeccc----chHHHHHHHHhcCCCEEEEE
Confidence            357998885432    24577888999999999984

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.84  E-value=0.0073  Score=41.13  Aligned_cols=95  Identities=18%  Similarity=0.192  Sum_probs=62.0

Q ss_pred             HHcCCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCC
Q 029414           23 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN  100 (194)
Q Consensus        23 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  100 (194)
                      ...++++||-.|.  +.|..++.+|+..  +.++++++.+++..+.+++    .|.+ .+ +   |..+.......    
T Consensus        24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~----lGa~-~~-i---~~~~~~~~~~~----   88 (171)
T d1iz0a2          24 QARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAE-EA-A---TYAEVPERAKA----   88 (171)
T ss_dssp             TCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCS-EE-E---EGGGHHHHHHH----
T ss_pred             CCCCCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccc----cccc-ee-e---ehhhhhhhhhc----
Confidence            3557788999884  3467888888885  5799999999888877664    4543 21 2   12222222211    


Q ss_pred             CCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          101 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       101 ~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ...+|+|| |....    .++.+++.|+|+|.++.-.
T Consensus        89 ~~g~D~v~-d~~G~----~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          89 WGGLDLVL-EVRGK----EVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             TTSEEEEE-ECSCT----THHHHHTTEEEEEEEEEC-
T ss_pred             cccccccc-cccch----hHHHHHHHHhcCCcEEEEe
Confidence            46799875 44322    3577889999999999853

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.53  E-value=0.0064  Score=41.15  Aligned_cols=90  Identities=18%  Similarity=0.225  Sum_probs=55.4

Q ss_pred             CeEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           28 KKTIEIGVFT-GYS-LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        28 ~~vLeiG~G~-G~~-~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      ++|+=||+|. |.+ +..+.+. ....+|+++|.+++.++.+++.    +.   +.....+....  .       ....|
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~--~-------~~~~d   64 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKV--E-------DFSPD   64 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG--G-------GTCCS
T ss_pred             CEEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhh--h-------ccccc
Confidence            3588899864 433 2233332 2256899999999988887764    22   11111121111  0       24578


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEE
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAV  134 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv  134 (194)
                      +|++..+.......++.+.+.++++.+++
T Consensus        65 lIila~p~~~~~~vl~~l~~~~~~~~ii~   93 (171)
T d2g5ca2          65 FVMLSSPVRTFREIAKKLSYILSEDATVT   93 (171)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             cccccCCchhhhhhhhhhhcccccccccc
Confidence            99888777777778888888888765543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.45  E-value=0.0057  Score=42.22  Aligned_cols=109  Identities=24%  Similarity=0.213  Sum_probs=67.3

Q ss_pred             cCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCC---C--CcE------------EEEecc
Q 029414           25 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---D--HKI------------NFIESE   86 (194)
Q Consensus        25 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~--~~v------------~~~~~d   86 (194)
                      .+|.+|+-||+|. |..++..|..+  +.+|+.+|.+++.++..++....+=.   .  ...            ++....
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~  104 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  104 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHH
Confidence            3678999999995 67888889886  58999999999999888766432210   0  000            111111


Q ss_pred             hHHHHHHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhcccCCeEEEEecccccc
Q 029414           87 ALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  142 (194)
Q Consensus        87 ~~~~~~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  142 (194)
                      ...+...+       ...|+|+.-..   ...+.-.-+...+.+|||.+||=-.+...|
T Consensus       105 ~~~l~~~l-------~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGG  156 (183)
T d1l7da1         105 AEAVLKEL-------VKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGG  156 (183)
T ss_dssp             HHHHHHHH-------TTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTC
T ss_pred             HHHHHHHH-------HhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCC
Confidence            11122222       56899886643   222223346778999999888754444444

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.42  E-value=0.0087  Score=40.77  Aligned_cols=101  Identities=14%  Similarity=0.283  Sum_probs=61.9

Q ss_pred             HHcCCCeEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe-cc-hHHHHHHHhhcCC
Q 029414           23 RLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SE-ALSVLDQLLKYSE   99 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d-~~~~~~~~~~~~~   99 (194)
                      +..++.+||-+|+|.+ ..+..+++... ..+|+++|.+++..+.+++.    +....+.... .+ ..+.....     
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~-----   94 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEV----GATECVNPQDYKKPIQEVLTEM-----   94 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHHHH-----
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHh----CCeeEEecCCchhHHHHHHHHH-----
Confidence            3556789999999654 46666677664 67999999999999887765    3321111111 12 12222222     


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEEe
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYD  136 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~  136 (194)
                      ..+.+|++|-....   ...++.+...++++ |.+++-
T Consensus        95 ~~~G~D~vid~~G~---~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          95 SNGGVDFSFEVIGR---LDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             TTSCBSEEEECSCC---HHHHHHHHHHBCTTTCEEEEC
T ss_pred             hcCCCCEEEecCCc---hhHHHHHHHHHhcCCcceEEe
Confidence            14689987765432   34566677778776 666653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.35  E-value=0.008  Score=40.84  Aligned_cols=101  Identities=15%  Similarity=0.220  Sum_probs=60.4

Q ss_pred             HHHcCCCeEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecc-h-HHHHHHHhhcC
Q 029414           22 LRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-A-LSVLDQLLKYS   98 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~-~~~~~~~~~~~   98 (194)
                      ....++++|+-+|+|.+. .+..++.... ..+|+++|.+++.++.+++    .|.+.-+.....+ . .+.....    
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~----~GAd~~in~~~~~~~~~~~~~~~----   94 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV----FGATDFVNPNDHSEPISQVLSKM----   94 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCCEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHH----cCCcEEEcCCCcchhHHHHHHhh----
Confidence            345567899999998854 5555666654 6789999999999888775    3533222111111 1 1222221    


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccCC-eEEEE
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVY  135 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~  135 (194)
                       ....+|+++-...   ....++.+..+++++ +++++
T Consensus        95 -~~~G~d~vid~~G---~~~~~~~a~~~~~~g~~~~~~  128 (175)
T d1cdoa2          95 -TNGGVDFSLECVG---NVGVMRNALESCLKGWGVSVL  128 (175)
T ss_dssp             -HTSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEE
T ss_pred             -ccCCcceeeeecC---CHHHHHHHHHHhhCCCcceeE
Confidence             1357998876543   234456677776665 55554

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.32  E-value=0.0046  Score=44.48  Aligned_cols=54  Identities=11%  Similarity=0.140  Sum_probs=43.1

Q ss_pred             HHHHHHHHH--cCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHH
Q 029414           16 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK   72 (194)
Q Consensus        16 ~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~   72 (194)
                      +++..++..  .++..|||..+|+|..+......   +-+.+++|++++.++.|+++++
T Consensus       200 ~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence            345555543  46789999999999987776654   5699999999999999999885

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.29  E-value=0.012  Score=39.86  Aligned_cols=101  Identities=16%  Similarity=0.234  Sum_probs=63.7

Q ss_pred             HHHcCCCeEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEe--cchHHHHHHHhhcC
Q 029414           22 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYS   98 (194)
Q Consensus        22 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~   98 (194)
                      ....++.+||-.|+|. |..++.+++... ...|+++|.+++..+.+++.    |...-+....  .+..+.....    
T Consensus        24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~l----Ga~~~i~~~~~~~~~~~~~~~~----   94 (176)
T d2fzwa2          24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEF----GATECINPQDFSKPIQEVLIEM----   94 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHHh----CCcEEEeCCchhhHHHHHHHHH----
Confidence            3455778999998873 346666777764 57899999999998877754    5332111111  1222233332    


Q ss_pred             CCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414           99 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus        99 ~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                       ..+.+|+|+-...   ....++.+..++++||.+++
T Consensus        95 -~~~g~D~vid~~G---~~~~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2          95 -TDGGVDYSFECIG---NVKVMRAALEACHKGWGVSV  127 (176)
T ss_dssp             -TTSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEE
T ss_pred             -cCCCCcEeeecCC---CHHHHHHHHHhhcCCceeEE
Confidence             1357998876442   33567788899999876654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.23  E-value=0.016  Score=39.89  Aligned_cols=105  Identities=11%  Similarity=0.082  Sum_probs=65.7

Q ss_pred             HHHHHHcCC--CeEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHH
Q 029414           19 AMLLRLVNA--KKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   94 (194)
Q Consensus        19 ~~l~~~~~~--~~vLeiG--~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (194)
                      ....+..++  ++||-.|  .|.|..++.+|+... ...|+++..+++......+   ..+...-+.....+..+.+...
T Consensus        21 ~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~G-a~~vi~~~~~~e~~~~l~~---~~gad~vi~~~~~~~~~~~~~~   96 (187)
T d1vj1a2          21 QEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLG-CSRVVGICGTQEKCLFLTS---ELGFDAAVNYKTGNVAEQLREA   96 (187)
T ss_dssp             HHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTT-CSEEEEEESSHHHHHHHHH---HSCCSEEEETTSSCHHHHHHHH
T ss_pred             HHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcC-CcceecccchHHHHhhhhh---cccceEEeeccchhHHHHHHHH
Confidence            334334444  6798877  467889999999875 4567777776654443322   3354322333334455555554


Q ss_pred             hhcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414           95 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .     ...+|+|| |..-   ...++..++.|+++|.++.-
T Consensus        97 ~-----~~GvDvv~-D~vG---g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          97 C-----PGGVDVYF-DNVG---GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             C-----TTCEEEEE-ESSC---HHHHHHHHTTEEEEEEEEEC
T ss_pred             h-----ccCceEEE-ecCC---chhHHHHhhhccccccEEEe
Confidence            2     35799876 4432   34678899999999999874

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.21  E-value=0.0058  Score=42.01  Aligned_cols=106  Identities=10%  Similarity=0.045  Sum_probs=66.5

Q ss_pred             HHHHHHHcCCCeEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHh
Q 029414           18 MAMLLRLVNAKKTIEIGVFT--GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   95 (194)
Q Consensus        18 l~~l~~~~~~~~vLeiG~G~--G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~   95 (194)
                      |....+..++++||-.|++.  |..++.+|+..  +.+++++..+++..+.+++    .+.+.-+.....+..+......
T Consensus        21 l~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~~~~~~   94 (182)
T d1v3va2          21 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKA   94 (182)
T ss_dssp             HHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHh----hhhhhhcccccccHHHHHHHHh
Confidence            33444456778999888755  45677788875  5799999988877665554    3533112222223333222221


Q ss_pred             hcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           96 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                          ..+.+|+||= +..   .+.++.+++.|+++|.++.-.
T Consensus        95 ----~~~Gvd~v~D-~vG---~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          95 ----SPDGYDCYFD-NVG---GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             ----CTTCEEEEEE-SSC---HHHHHHHGGGEEEEEEEEECC
T ss_pred             ----hcCCCceeEE-ecC---chhhhhhhhhccCCCeEEeec
Confidence                2467998664 322   346788999999999999853

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.04  E-value=0.0058  Score=42.32  Aligned_cols=108  Identities=12%  Similarity=0.123  Sum_probs=64.1

Q ss_pred             HHHcCCCeEEEE--ccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH---HHHHHh
Q 029414           22 LRLVNAKKTIEI--GVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS---VLDQLL   95 (194)
Q Consensus        22 ~~~~~~~~vLei--G~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~   95 (194)
                      .+..++.+||-+  |+| .|..++.+|+..  +.+++++-.+++..+...+.+.+.|.+.-+..-..+..+   ...+..
T Consensus        24 ~~~~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~  101 (189)
T d1gu7a2          24 VKLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWI  101 (189)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHH
T ss_pred             hCCCCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHH
Confidence            334455678887  333 467888899885  578888766666777666677777755222211111111   112111


Q ss_pred             hcCCCCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414           96 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ..  ..+.+|++| |...   ...++..++.|+++|.++...
T Consensus       102 ~~--~g~~vdvv~-D~vg---~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         102 KQ--SGGEAKLAL-NCVG---GKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HH--HTCCEEEEE-ESSC---HHHHHHHHHTSCTTCEEEECC
T ss_pred             hh--ccCCceEEE-ECCC---cchhhhhhhhhcCCcEEEEEC
Confidence            00  135689777 4432   334677889999999999753

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.92  E-value=0.0046  Score=45.91  Aligned_cols=57  Identities=9%  Similarity=0.018  Sum_probs=44.3

Q ss_pred             HHHHHHHH--HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC
Q 029414           16 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG   75 (194)
Q Consensus        16 ~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   75 (194)
                      .++..++.  ..++..|||..+|+|..+......   +-+.+++|++++.++.+++++....
T Consensus       238 ~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         238 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             HHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHHhcc
Confidence            34444444  346789999999999987776654   5699999999999999999886543

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=95.81  E-value=0.0087  Score=43.82  Aligned_cols=114  Identities=12%  Similarity=0.143  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHH
Q 029414           12 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   91 (194)
Q Consensus        12 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~   91 (194)
                      +....++..+...+.. .-+..-+|+-..+..+++   +..+.+.+|..|+-.+..++++..   ..++++.+.|..+.+
T Consensus        69 ~~~~~yl~~v~~~n~~-~~l~~YPGSP~ia~~llR---~~Drl~l~ELHp~e~~~L~~~~~~---~~~~~v~~~DG~~~l  141 (271)
T d2oo3a1          69 SLFLEYISVIKQINLN-STLSYYPGSPYFAINQLR---SQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKL  141 (271)
T ss_dssp             GGGHHHHHHHHHHSSS-SSCCEEECHHHHHHHHSC---TTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHH
T ss_pred             hhHHHHHHHHHHhCCC-CCcCcCCCCHHHHHHhCC---CCCceEEeecCHHHHHHHHHHhcc---CCCceEEcCchHHHH
Confidence            3345566655555433 234566666666666655   477999999999988888876632   358999999999988


Q ss_pred             HHHhhcCCCCCceeEEEEeCC---ccccHHHHHHHHhccc--CCeEEEE
Q 029414           92 DQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLK--VGGIAVY  135 (194)
Q Consensus        92 ~~~~~~~~~~~~fD~i~id~~---~~~~~~~~~~~~~~L~--~gG~lv~  135 (194)
                      ..+.+.   .++--+|+||++   +.++....+.+.+.++  |.|++++
T Consensus       142 ~allPP---~~rRgLVLIDPpYE~k~ey~~v~~~l~~a~kr~~~g~~~i  187 (271)
T d2oo3a1         142 NALLPP---PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  187 (271)
T ss_dssp             HHHCSC---TTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             HhhCCC---CCCceEEEecCCcCCHHHHHHHHHHHHHHHHhCCCceEEE
Confidence            776433   356789999987   3455555555544443  5676666

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.77  E-value=0.016  Score=42.00  Aligned_cols=57  Identities=9%  Similarity=-0.017  Sum_probs=44.8

Q ss_pred             HHHHHHHH--HcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC
Q 029414           16 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG   75 (194)
Q Consensus        16 ~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   75 (194)
                      +++..++.  ..++..|||..+|+|..+..-...   +-+.+++|++++..+.|+++++...
T Consensus       195 ~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~~  253 (279)
T d1eg2a_         195 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQ  253 (279)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhh
Confidence            34444444  346789999999999987777665   5599999999999999999998653

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=95.68  E-value=0.005  Score=44.74  Aligned_cols=119  Identities=11%  Similarity=0.056  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHc---CCCeEEEEcccccHHHHHHHhhCC---C------------------------------------C
Q 029414           14 AGQLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALTIP---E------------------------------------D   51 (194)
Q Consensus        14 ~~~~l~~l~~~~---~~~~vLeiG~G~G~~~~~la~~~~---~------------------------------------~   51 (194)
                      ..++|.......   .+..++|--||+|...+..|....   +                                    .
T Consensus        35 aa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~  114 (249)
T d1o9ga_          35 ATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQ  114 (249)
T ss_dssp             HHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhcccccc
Confidence            445555444333   345799999999999888665321   1                                    1


Q ss_pred             CEEEEEeCCcchHHhH---HHHHHHcCCCCcEEEEecchHHHH--HHHhhcCCCCCceeEEEEeCCc------------c
Q 029414           52 GQITAIDVNRETYEIG---LPIIKKAGVDHKINFIESEALSVL--DQLLKYSENEGSFDYAFVDADK------------D  114 (194)
Q Consensus        52 ~~v~~iD~~~~~~~~a---~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~~fD~i~id~~~------------~  114 (194)
                      .++++.|+++++++.|   +++++..++...+.+.+.|+.+..  .....    ...+++|+++.+.            +
T Consensus       115 ~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~----~~~~GlIVtNPPYGERl~~~~~~~~~  190 (249)
T d1o9ga_         115 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLA----GSAPDVVLTDLPYGERTHWEGQVPGQ  190 (249)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHT----TCCCSEEEEECCGGGSSSSSSCCCHH
T ss_pred             CCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccC----CCCCCEEEeCCCccccccccccchHH
Confidence            2456777777777777   568899999989999999875532  22211    3568999999761            1


Q ss_pred             ccHHHHHHHHhcccCCeEEEEe
Q 029414          115 NYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       115 ~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      .+..+...+.+.++...++++.
T Consensus       191 ~~~~~~~~l~~~~p~~s~~~it  212 (249)
T d1o9ga_         191 PVAGLLRSLASALPAHAVIAVT  212 (249)
T ss_dssp             HHHHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHHHccCCCCcEEEEe
Confidence            2455556677778766666664

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.57  E-value=0.034  Score=37.16  Aligned_cols=87  Identities=13%  Similarity=-0.007  Sum_probs=54.2

Q ss_pred             eEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414           29 KTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  107 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i  107 (194)
                      +|.=||+|  ..+..+|+.+ ..+.+|+++|.+++..+.+++.    +.-   .....+. +   .       -...|+|
T Consensus         2 kI~iIG~G--~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~----~~~---~~~~~~~-~---~-------~~~~DiI   61 (165)
T d2f1ka2           2 KIGVVGLG--LIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER----QLV---DEAGQDL-S---L-------LQTAKII   61 (165)
T ss_dssp             EEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TSC---SEEESCG-G---G-------GTTCSEE
T ss_pred             EEEEEeec--HHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh----hcc---ceeeeec-c---c-------ccccccc
Confidence            56778775  3333333322 1267999999998877766542    321   1111121 1   1       2568999


Q ss_pred             EEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          108 FVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       108 ~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      ++..+.......++.+.+.++++.+++-
T Consensus        62 ilavp~~~~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          62 FLCTPIQLILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             EECSCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             cccCcHhhhhhhhhhhhhhcccccceee
Confidence            9977766777888888888888776653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.2  Score=35.94  Aligned_cols=81  Identities=10%  Similarity=0.017  Sum_probs=57.9

Q ss_pred             cCCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHh
Q 029414           25 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLL   95 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~   95 (194)
                      .+++.+|-.|++.|.   .+..|++.   +.+|+.++.+++.++.+.+.+...+.+.++..+++|..+      ......
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~---G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~   84 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQ---GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR   84 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            467899999988764   34445543   779999999999999999888887766688888887533      222222


Q ss_pred             hcCCCCCceeEEEEeC
Q 029414           96 KYSENEGSFDYAFVDA  111 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~  111 (194)
                      .+   .+.+|.++..+
T Consensus        85 ~~---~g~iD~lVnnA   97 (257)
T d1xg5a_          85 SQ---HSGVDICINNA   97 (257)
T ss_dssp             HH---HCCCSEEEECC
T ss_pred             Hh---cCCCCEEEecc
Confidence            11   36899888664

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.55  E-value=0.032  Score=35.96  Aligned_cols=93  Identities=15%  Similarity=0.139  Sum_probs=59.2

Q ss_pred             eEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCcee
Q 029414           29 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFD  105 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~fD  105 (194)
                      +|+-+|+  |..+..+++.+. .+..|+.+|.+++..+.+++.+       .+.++.||+.+  .+...     .-...|
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~-----~i~~a~   67 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDA-----GIEDAD   67 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHT-----TTTTCS
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhc-----Chhhhh
Confidence            5666676  777777776653 3568999999999888766542       35788888765  34443     135788


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      .+++-.......-......+.+.+.-+++.
T Consensus        68 ~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~   97 (132)
T d1lssa_          68 MYIAVTGKEEVNLMSSLLAKSYGINKTIAR   97 (132)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             hhcccCCcHHHHHHHHHHHHHcCCceEEEE
Confidence            887744333333344445567777755543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=95.50  E-value=0.02  Score=44.32  Aligned_cols=52  Identities=13%  Similarity=0.093  Sum_probs=43.3

Q ss_pred             cCCCeEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHhHHHHHHHcCC
Q 029414           25 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGV   76 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~   76 (194)
                      .+...++|||+..|..+..++...+. ..+|+++|++|...+..++++..+..
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            35578999999999999988776542 36999999999999999999886653

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.50  E-value=0.0072  Score=43.40  Aligned_cols=51  Identities=16%  Similarity=0.241  Sum_probs=39.7

Q ss_pred             EEEecchHHHHHHHhhcCCCCCceeEEEEeCCc-------------cc----cHHHHHHHHhcccCCeEEEEe
Q 029414           81 NFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------------DN----YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        81 ~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~-------------~~----~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++++||..+.+..+.     ++++|+|+.|++.             .+    ....++++.+.|+|||.+++.
T Consensus         6 ~i~~gDcle~l~~lp-----d~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~   73 (256)
T d1g60a_           6 KIHQMNCFDFLDQVE-----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (256)
T ss_dssp             SEEECCHHHHHHHSC-----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCc-----CCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence            588999999998873     5789999999762             11    234567888999999998764

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.43  E-value=0.034  Score=35.64  Aligned_cols=92  Identities=10%  Similarity=0.026  Sum_probs=62.3

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCceeE
Q 029414           29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDY  106 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~fD~  106 (194)
                      +++-+  |.|..+..+++.+. +..++.+|.+++..+..+.    .    .+.++.||+.+  .+...     .-.+.+.
T Consensus         2 HivI~--G~g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~~----~----~~~~i~Gd~~~~~~L~~a-----~i~~A~~   65 (129)
T d2fy8a1           2 HVVIC--GWSESTLECLRELR-GSEVFVLAEDENVRKKVLR----S----GANFVHGDPTRVSDLEKA-----NVRGARA   65 (129)
T ss_dssp             CEEEE--SCCHHHHHHHHTSC-GGGEEEEESCTTHHHHHHH----T----TCEEEESCTTSHHHHHHT-----TCTTCSE
T ss_pred             EEEEE--CCCHHHHHHHHHHc-CCCCEEEEcchHHHHHHHh----c----CccccccccCCHHHHHHh-----hhhcCcE
Confidence            34444  55889999999886 6678899999988765542    2    56788899755  34442     2357888


Q ss_pred             EEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          107 AFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       107 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +++...........-...+.+.|...+++.
T Consensus        66 vi~~~~~d~~n~~~~~~~r~~~~~~~iia~   95 (129)
T d2fy8a1          66 VIVNLESDSETIHCILGIRKIDESVRIIAE   95 (129)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHCSSSCEEEE
T ss_pred             EEEeccchhhhHHHHHHHHHHCCCceEEEE
Confidence            887655444444445556788888777764

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.34  E-value=0.022  Score=38.91  Aligned_cols=97  Identities=10%  Similarity=0.074  Sum_probs=59.7

Q ss_pred             CCCeEEEEccccc--HHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           26 NAKKTIEIGVFTG--YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        26 ~~~~vLeiG~G~G--~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ++.+||-.|.+.|  ..++.+|+..  +.+|+++-.+++..+.+++.    +...-+. ...+..+.....     ..+.
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~l----Ga~~vi~-~~~~~~~~~~~~-----~~~g   98 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRVL----GAKEVLA-REDVMAERIRPL-----DKQR   98 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHHT----TCSEEEE-CC---------C-----CSCC
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHhc----ccceeee-cchhHHHHHHHh-----hccC
Confidence            4678999986554  5777788874  68999999988888777643    5431121 121212222211     2468


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +|+|+ |.....   .++...+.|++||.++.-..
T Consensus        99 vD~vi-d~vgg~---~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2          99 WAAAV-DPVGGR---TLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             EEEEE-ECSTTT---THHHHHHTEEEEEEEEECSC
T ss_pred             cCEEE-EcCCch---hHHHHHHHhCCCceEEEeec
Confidence            99655 443322   36778899999999998544

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.30  E-value=0.0086  Score=43.56  Aligned_cols=53  Identities=15%  Similarity=0.186  Sum_probs=41.2

Q ss_pred             cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc----------ccc----HHHHHHHHhcccCCeEEEEe
Q 029414           79 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----------DNY----CNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        79 ~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~----------~~~----~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +-.++.+|..+.+..+.     ++++|+||.|++.          .++    ...++.+.+.|+|+|.+++.
T Consensus         4 ~~~~~~~D~le~l~~l~-----d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAKLP-----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             EEEEEECCHHHHHHTSC-----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceEEechHHHHHhhCc-----CCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            34577899999998873     5789999999862          223    44567788999999999884

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.20  E-value=0.011  Score=43.65  Aligned_cols=53  Identities=19%  Similarity=0.267  Sum_probs=42.0

Q ss_pred             cEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc-------------cc----cHHHHHHHHhcccCCeEEEEe
Q 029414           79 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------------DN----YCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        79 ~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~-------------~~----~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      +-++++||..+.+..+.     ++++|+|+.|++.             .+    ....++.+.+.|+++|.++++
T Consensus        12 ~~~l~~GD~le~l~~l~-----~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~   81 (320)
T d1booa_          12 NGSMYIGDSLELLESFP-----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   81 (320)
T ss_dssp             SEEEEESCHHHHGGGSC-----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEehhHHHHHhhCc-----cCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence            45899999999988873     5799999999761             11    234578888999999999885

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.98  E-value=0.053  Score=36.53  Aligned_cols=96  Identities=10%  Similarity=0.040  Sum_probs=60.7

Q ss_pred             CeEEEEcccccHH--HHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC-CC-CcEE----EEecchHHHHHHHhhcCC
Q 029414           28 KKTIEIGVFTGYS--LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-VD-HKIN----FIESEALSVLDQLLKYSE   99 (194)
Q Consensus        28 ~~vLeiG~G~G~~--~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-~~-~~v~----~~~~d~~~~~~~~~~~~~   99 (194)
                      ++|.-||+|.-..  +..|++.   +..|+.+|.+++..+..++.-.... .+ ....    ....|..+.   +     
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~-----   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK---GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---V-----   70 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---H-----
T ss_pred             CEEEEECccHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---h-----
Confidence            5688889876443  3334443   5799999999988877665421100 01 0111    112222222   2     


Q ss_pred             CCCceeEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          100 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       100 ~~~~fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                        ...|+|++-.........++.+.++++++..|++.
T Consensus        71 --~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          71 --KDADVILIVVPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             --TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             --cCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEEe
Confidence              56899999777677788899999999999887763

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=94.76  E-value=0.26  Score=36.23  Aligned_cols=110  Identities=9%  Similarity=0.007  Sum_probs=66.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC--CcEEEEecchHH-HHHHHhhcCCCCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALS-VLDQLLKYSENEG  102 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~-~~~~~~~~~~~~~  102 (194)
                      ....|+.+|||.=.  ..+-...+++.+++-+|. |+.++.-++.+.+.+..  .+..++..|..+ +...+........
T Consensus        89 g~~qvV~LGaGlDT--r~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~  165 (297)
T d2uyoa1          89 GIRQFVILASGLDS--RAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  165 (297)
T ss_dssp             TCCEEEEETCTTCC--HHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCcccCC--hhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCC
Confidence            45678889885544  443323334567777774 77777777777776543  456666666554 2333322111112


Q ss_pred             ceeEEEEeCC-----ccccHHHHHHHHhcccCCeEEEEecc
Q 029414          103 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       103 ~fD~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      ..-+++..+.     .+.....++.+..+..||+.|+++-.
T Consensus       166 ~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         166 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            3344455443     45567788888889999999999744

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.3  Score=35.18  Aligned_cols=105  Identities=14%  Similarity=0.057  Sum_probs=65.1

Q ss_pred             CCeEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHhhcC
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS   98 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~   98 (194)
                      +++|.-|.-|++..+..+|+.+.  .+.+|+..+.+++..+.+.+.+...+.  ++.++..|..+      .......+ 
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~-   78 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE-   78 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHh-
Confidence            46674443344444444443331  256999999999999999888887663  67888888533      11222211 


Q ss_pred             CCCCceeEEEEeCCc-------c----cc-----------HHHHHHHHhcccCCeEEEEe
Q 029414           99 ENEGSFDYAFVDADK-------D----NY-----------CNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus        99 ~~~~~fD~i~id~~~-------~----~~-----------~~~~~~~~~~L~~gG~lv~~  136 (194)
                        .+++|+++.++..       .    ++           ....+.++++|+++|.|+.-
T Consensus        79 --~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni  136 (275)
T d1wmaa1          79 --YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  136 (275)
T ss_dssp             --HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             --cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence              3689998877541       0    11           12345567888899988764

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=93.84  E-value=0.053  Score=41.32  Aligned_cols=66  Identities=17%  Similarity=0.207  Sum_probs=43.4

Q ss_pred             cCCCCHHHHHHHHHHHH---------HcC--CCeEEEEcccccHHHHHHHhhCC------CCCEEEEEeCCcchHHhHHH
Q 029414            7 MMGTAPDAGQLMAMLLR---------LVN--AKKTIEIGVFTGYSLLLTALTIP------EDGQITAIDVNRETYEIGLP   69 (194)
Q Consensus         7 ~~~~~~~~~~~l~~l~~---------~~~--~~~vLeiG~G~G~~~~~la~~~~------~~~~v~~iD~~~~~~~~a~~   69 (194)
                      -+.++|+++++...++.         ...  ..+|+|+|+|.|..+..++..+.      ...+++.+|.++...+.-++
T Consensus        49 DF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~  128 (365)
T d1zkda1          49 DFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQT  128 (365)
T ss_dssp             -CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHH
T ss_pred             CeECCCchHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHH
Confidence            44566666555544432         122  34799999999999888766543      24578999999976666665


Q ss_pred             HHH
Q 029414           70 IIK   72 (194)
Q Consensus        70 ~~~   72 (194)
                      .+.
T Consensus       129 ~l~  131 (365)
T d1zkda1         129 LLA  131 (365)
T ss_dssp             HST
T ss_pred             Hhc
Confidence            554

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=93.70  E-value=0.056  Score=39.81  Aligned_cols=95  Identities=13%  Similarity=-0.060  Sum_probs=61.7

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414           29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  108 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~  108 (194)
                      +|+|+.||.|..++.+-.+.  -..+.++|+++...+..+.|+     +  -.++.+|..++-..-      .+..|+++
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG--~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~------~~~~dll~   66 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDE------FPKCDGII   66 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHT--CEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGG------SCCCSEEE
T ss_pred             eEEEeCcCcCHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhH------cccccEEe
Confidence            69999999999998886652  124569999998888777765     2  245667876642221      35789998


Q ss_pred             EeCC------------ccccH-HH---HHHHHhcccCCeEEEEeccc
Q 029414          109 VDAD------------KDNYC-NY---HERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       109 id~~------------~~~~~-~~---~~~~~~~L~~gG~lv~~~~~  139 (194)
                      ...+            ..+.. ..   +-.+...++| -++++.|+.
T Consensus        67 ~g~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~P-k~~~lENV~  112 (324)
T d1dcta_          67 GGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKP-IFFLAENVK  112 (324)
T ss_dssp             ECCCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCC-SEEEEEEEG
T ss_pred             ecccccccccccccccccccccchHHHHHHHHHhhCC-ceeeccccc
Confidence            7643            11111 12   2224577788 577788764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.035  Score=41.41  Aligned_cols=75  Identities=16%  Similarity=0.091  Sum_probs=49.9

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCCE-EEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      |.+|+|+.||.|..++.|-.+.- +.+ +.++|+++.+.+..+.++     + ...++.+|..++......    ...+|
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~-~~~~~~a~E~~~~a~~~~~~n~-----~-~~~~~~~di~~~~~~~~~----~~~~D   70 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCI-PAQVVAAIDVNTVANEVYKYNF-----P-HTQLLAKTIEGITLEEFD----RLSFD   70 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTC-SEEEEEEECCCHHHHHHHHHHC-----T-TSCEECSCGGGCCHHHHH----HHCCS
T ss_pred             CCEEEEcCcCccHHHHHHHHcCC-CCeEEEEEECCHHHHHHHHHHC-----C-CCCcccCchhhCCHhHcC----CCCcc
Confidence            56899999999998888755421 223 678999998888877765     2 345666776654222111    13689


Q ss_pred             EEEEeCC
Q 029414          106 YAFVDAD  112 (194)
Q Consensus       106 ~i~id~~  112 (194)
                      +++...+
T Consensus        71 ll~ggpP   77 (343)
T d1g55a_          71 MILMSPP   77 (343)
T ss_dssp             EEEECCC
T ss_pred             EEEeecc
Confidence            9886643

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=92.98  E-value=0.65  Score=33.11  Aligned_cols=80  Identities=15%  Similarity=0.167  Sum_probs=55.5

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHhh
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK   96 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~   96 (194)
                      +++++|-.|++.|.   .+..|++.   +.+|+.+|.+++.++.+.+.+...+...++..+.+|..+      .......
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~---Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   79 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAE---GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE   79 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence            56889999987763   45556653   779999999999998888887766555578888887532      1222221


Q ss_pred             cCCCCCceeEEEEeC
Q 029414           97 YSENEGSFDYAFVDA  111 (194)
Q Consensus        97 ~~~~~~~fD~i~id~  111 (194)
                      +   .++.|.++..+
T Consensus        80 ~---~G~iDiLVnnA   91 (258)
T d1iy8a_          80 R---FGRIDGFFNNA   91 (258)
T ss_dssp             H---HSCCSEEEECC
T ss_pred             H---hCCCCEEEECC
Confidence            1   36899887654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.65  Score=32.95  Aligned_cols=81  Identities=17%  Similarity=0.190  Sum_probs=53.8

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHhh
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK   96 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~   96 (194)
                      +++.+|-.|++.|.   .+..|++   .+.+|+.++.+++.++.+.+.+.....+.++.++..|..+      .+.....
T Consensus         2 ~GKvalITGas~GIG~aia~~la~---~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLL---KGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD   78 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            56888988977653   3344444   3789999999999888887777654334578888888533      1222211


Q ss_pred             cCCCCCceeEEEEeCC
Q 029414           97 YSENEGSFDYAFVDAD  112 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~  112 (194)
                         ..+++|.++..+.
T Consensus        79 ---~~G~iDilVnnAg   91 (254)
T d2gdza1          79 ---HFGRLDILVNNAG   91 (254)
T ss_dssp             ---HHSCCCEEEECCC
T ss_pred             ---HcCCcCeeccccc
Confidence               1368998887654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.54  E-value=0.25  Score=32.19  Aligned_cols=98  Identities=15%  Similarity=0.051  Sum_probs=59.4

Q ss_pred             CeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCce
Q 029414           28 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF  104 (194)
Q Consensus        28 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~f  104 (194)
                      .+|+=+|+  |..+..+++.+. .+..++.+|.+++......+...    ...+.++.||+.+  .+...     .-+..
T Consensus         4 nHiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~----~~~~~vi~Gd~~d~~~L~~a-----~i~~a   72 (153)
T d1id1a_           4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL----GDNADVIPGDSNDSSVLKKA-----GIDRC   72 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH----CTTCEEEESCTTSHHHHHHH-----TTTTC
T ss_pred             CEEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh----cCCcEEEEccCcchHHHHHh-----ccccC
Confidence            35777776  556666555442 25689999999875443333332    2367889998765  34443     23578


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEe
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      |.+++-..............+.+.|+..+++.
T Consensus        73 ~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          73 RAILALSDNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             SEEEECSSCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             CEEEEccccHHHHHHHHHHHHHhCCCCceEEE
Confidence            88887655333333344455677788766663

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=92.54  E-value=0.29  Score=35.98  Aligned_cols=97  Identities=10%  Similarity=-0.026  Sum_probs=63.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD  105 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD  105 (194)
                      .+.+|+|+.||.|..++.|-.+.  -..+.++|+++.+.+..+.|+...        .++|..++...-      ...+|
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG--~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~~------~~~~D   73 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEKT------IPDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGGG------SCCCS
T ss_pred             CCCeEEEECccccHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchhh------cceee
Confidence            56799999999999999886642  124567999999999988887321        136665542221      35799


Q ss_pred             EEEEeCC----------------ccccHHHHHHHHhcccCCeEEEEeccc
Q 029414          106 YAFVDAD----------------KDNYCNYHERLMKLLKVGGIAVYDNTL  139 (194)
Q Consensus       106 ~i~id~~----------------~~~~~~~~~~~~~~L~~gG~lv~~~~~  139 (194)
                      +++...+                .......+-.+.+.++| -++++.|+.
T Consensus        74 ll~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP-~~~~lENV~  122 (327)
T d2c7pa1          74 ILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKP-KVVFMENVK  122 (327)
T ss_dssp             EEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCC-SEEEEEEEG
T ss_pred             eeecccccchhhhhhhhcCCcccchhHHHHHHHHHhccCC-cEEecccch
Confidence            9987743                01111222334467788 467787764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.45  E-value=0.62  Score=33.51  Aligned_cols=80  Identities=26%  Similarity=0.303  Sum_probs=55.9

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecchHH------HHHHHh
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQLL   95 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~------~~~~~~   95 (194)
                      +++++|-.|++.|.   .+..|++.   +.+|+.+|.+++.++.+.+.+...+.+ .++..+.+|..+      ......
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~---Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   79 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKE---GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL   79 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence            57888888887763   34445553   679999999999999999988887654 478888887533      122221


Q ss_pred             hcCCCCCceeEEEEeC
Q 029414           96 KYSENEGSFDYAFVDA  111 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~  111 (194)
                      .+   .++.|.++..+
T Consensus        80 ~~---~G~iDilVnnA   92 (274)
T d1xhla_          80 AK---FGKIDILVNNA   92 (274)
T ss_dssp             HH---HSCCCEEEECC
T ss_pred             HH---cCCceEEEeec
Confidence            11   36889888664

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=92.33  E-value=0.71  Score=28.59  Aligned_cols=76  Identities=18%  Similarity=0.135  Sum_probs=52.1

Q ss_pred             CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhcccC
Q 029414           52 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV  129 (194)
Q Consensus        52 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~L~~  129 (194)
                      .+|..+|-++......+..++..|+  ++.....+..+.+..+.     ...||+|++|...+  +-.++++.+.+ ..|
T Consensus         2 krILivDD~~~~~~~l~~~L~~~g~--~v~~~a~~~~~al~~~~-----~~~~dliilD~~mp~~~G~e~~~~ir~-~~~   73 (118)
T d1u0sy_           2 KRVLIVDDAAFMRMMLKDIITKAGY--EVAGEATNGREAVEKYK-----ELKPDIVTMDITMPEMNGIDAIKEIMK-IDP   73 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HHCCSEEEEECSCGGGCHHHHHHHHHH-HCT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCC--ceEEEECCHHHHHHHHH-----hccCCEEEEecCCCCCCHHHHHHHHHH-hCC
Confidence            4889999999999999999998875  34334567777666653     25799999997633  44556666643 344


Q ss_pred             Ce-EEEE
Q 029414          130 GG-IAVY  135 (194)
Q Consensus       130 gG-~lv~  135 (194)
                      +- +|++
T Consensus        74 ~~pvi~l   80 (118)
T d1u0sy_          74 NAKIIVC   80 (118)
T ss_dssp             TCCEEEE
T ss_pred             CCcEEEE
Confidence            43 4444

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.07  E-value=0.67  Score=33.23  Aligned_cols=80  Identities=25%  Similarity=0.326  Sum_probs=55.6

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecchHH------HHHHHh
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQLL   95 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~------~~~~~~   95 (194)
                      +++++|-.|++.|.   .+..|++.   +.+|+.++.+++.++.+.+.+...+.. .++..+.+|..+      ......
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~---Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   80 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQE---GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL   80 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence            56888888877663   34445553   679999999999999999988877654 468888887532      122222


Q ss_pred             hcCCCCCceeEEEEeC
Q 029414           96 KYSENEGSFDYAFVDA  111 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~  111 (194)
                      .+   .+..|.++..+
T Consensus        81 ~~---~g~iDilvnnA   93 (272)
T d1xkqa_          81 KQ---FGKIDVLVNNA   93 (272)
T ss_dssp             HH---HSCCCEEEECC
T ss_pred             HH---hCCceEEEeCC
Confidence            11   36799888663

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.04  E-value=0.81  Score=30.57  Aligned_cols=71  Identities=11%  Similarity=0.124  Sum_probs=42.2

Q ss_pred             eEEEEcccc-cHHHHHHHhhCCCCCEEEEE-eCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 029414           29 KTIEIGVFT-GYSLLLTALTIPEDGQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  106 (194)
Q Consensus        29 ~vLeiG~G~-G~~~~~la~~~~~~~~v~~i-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~  106 (194)
                      +|.=||||. |..-+......+ +.+++++ |.+++..+   +.....+.+...+++ .|..+.+..        ..+|+
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~-~~~i~ai~d~~~~~~~---~~~~~~~~~~~~~~~-~~~~~ll~~--------~~iD~   69 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKAK---AFATANNYPESTKIH-GSYESLLED--------PEIDA   69 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHHH---HHHHHTTCCTTCEEE-SSHHHHHHC--------TTCCE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCC-CCEEEEEEeCCccccc---cchhccccccceeec-CcHHHhhhc--------cccce
Confidence            577899984 443333344444 6777764 77765443   334455665455554 465555442        57899


Q ss_pred             EEEeCC
Q 029414          107 AFVDAD  112 (194)
Q Consensus       107 i~id~~  112 (194)
                      |++..+
T Consensus        70 v~I~tp   75 (184)
T d1ydwa1          70 LYVPLP   75 (184)
T ss_dssp             EEECCC
T ss_pred             eeeccc
Confidence            998754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.81  E-value=0.1  Score=33.34  Aligned_cols=92  Identities=15%  Similarity=0.030  Sum_probs=52.8

Q ss_pred             eEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCCCCcee
Q 029414           29 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFD  105 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~fD  105 (194)
                      +++-+|+  |..+..+++.+. .+..|+.+|.+++.++.+++.        ....+.+|+.+  .+....     -...|
T Consensus         2 ~~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~--------~~~~~~gd~~~~~~l~~a~-----i~~a~   66 (134)
T d2hmva1           2 QFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY--------ATHAVIANATEENELLSLG-----IRNFE   66 (134)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT--------CSEEEECCTTCTTHHHHHT-----GGGCS
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh--------CCcceeeecccchhhhccC-----Ccccc
Confidence            4556665  666666665552 257899999999888765421        23556677654  444431     24678


Q ss_pred             EEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          106 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       106 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      .+++..........+-...+.+.+...++.
T Consensus        67 ~vi~~~~~~~~~~~~~~~~~~~~~~~~iia   96 (134)
T d2hmva1          67 YVIVAIGANIQASTLTTLLLKELDIPNIWV   96 (134)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEcCchHHhHHHHHHHHHHcCCCcEEe
Confidence            887765432222333333344445556665

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.50  E-value=0.7  Score=32.94  Aligned_cols=80  Identities=24%  Similarity=0.262  Sum_probs=54.7

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCC-CcEEEEecchHH------HHHHHh
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQLL   95 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~------~~~~~~   95 (194)
                      ++|.+|-.|++.|.   .+..|++.   +.+|+.++.+++.++.+.+.+...+.. .++..+.+|..+      ......
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~---Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~   80 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFARE---GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL   80 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHH
Confidence            56888888876653   33445543   789999999999999998888877654 568888888632      222222


Q ss_pred             hcCCCCCceeEEEEeC
Q 029414           96 KYSENEGSFDYAFVDA  111 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~  111 (194)
                      .+   .++.|.++..+
T Consensus        81 ~~---~g~iDilvnnA   93 (264)
T d1spxa_          81 GK---FGKLDILVNNA   93 (264)
T ss_dssp             HH---HSCCCEEEECC
T ss_pred             HH---hCCCCEeeccc
Confidence            11   36899887553

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=91.44  E-value=0.058  Score=36.36  Aligned_cols=97  Identities=16%  Similarity=0.120  Sum_probs=60.6

Q ss_pred             CCCeEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 029414           26 NAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS  103 (194)
Q Consensus        26 ~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  103 (194)
                      ++.+||--|.  |.|..++.+|+..  +.+|+++.-+++..+.+++.    +.+ .+  +.  ..+...+.... ...+.
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~--Ga~Viat~~s~~k~~~~~~l----Gad-~v--i~--~~~~~~~~~~~-~~~~g   90 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQL----GAS-EV--IS--REDVYDGTLKA-LSKQQ   90 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHHH----TCS-EE--EE--HHHHCSSCCCS-SCCCC
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHc--CCceEEEecCHHHHHHHHhh----ccc-ce--Ee--ccchhchhhhc-ccCCC
Confidence            3457888775  4456788889885  58999999998887776654    543 22  21  11211111000 12357


Q ss_pred             eeEEEEeCCccccHHHHHHHHhcccCCeEEEEecc
Q 029414          104 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  138 (194)
Q Consensus       104 fD~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  138 (194)
                      +|+|+-...    ...+..+++.|+++|.+++-..
T Consensus        91 vd~vid~vg----g~~~~~~~~~l~~~G~iv~~G~  121 (167)
T d1tt7a2          91 WQGAVDPVG----GKQLASLLSKIQYGGSVAVSGL  121 (167)
T ss_dssp             EEEEEESCC----THHHHHHHTTEEEEEEEEECCC
T ss_pred             ceEEEecCc----HHHHHHHHHHhccCceEEEeec
Confidence            997664322    2356788999999999998543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=1.6  Score=30.72  Aligned_cols=82  Identities=15%  Similarity=0.109  Sum_probs=56.0

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-C
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-E   99 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~   99 (194)
                      .++.+|-.|++.|.   .+..|++.   +.+|+..+.+++.++...+.+...+  .++..+.+|..+.  ...+.... .
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~---G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~   80 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKL---KSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA   80 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            57888888888773   55556654   7799999999999998888887665  4788888886432  12211100 1


Q ss_pred             CCCceeEEEEeCC
Q 029414          100 NEGSFDYAFVDAD  112 (194)
Q Consensus       100 ~~~~fD~i~id~~  112 (194)
                      +.+..|.++..+.
T Consensus        81 ~~g~idilinnag   93 (244)
T d1yb1a_          81 EIGDVSILVNNAG   93 (244)
T ss_dssp             HTCCCSEEEECCC
T ss_pred             HcCCCceeEeecc
Confidence            2477998886653

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.39  E-value=1.2  Score=31.59  Aligned_cols=79  Identities=23%  Similarity=0.297  Sum_probs=54.6

Q ss_pred             cCCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHh
Q 029414           25 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLL   95 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~   95 (194)
                      .+++++|-.|.+.|.   .+..|++.   +.+|+.+|.+++.++.+.+.+...+  .++..+.+|..+      .+....
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~---Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~   77 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEE---GTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVV   77 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence            367889988977663   44455553   6799999999999999988887765  367888887532      222222


Q ss_pred             hcCCCCCceeEEEEeC
Q 029414           96 KYSENEGSFDYAFVDA  111 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~  111 (194)
                      .+   .+..|.++..+
T Consensus        78 ~~---~g~iDilVnna   90 (260)
T d1zema1          78 RD---FGKIDFLFNNA   90 (260)
T ss_dssp             HH---HSCCCEEEECC
T ss_pred             HH---hCCCCeehhhh
Confidence            11   36899888653

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.28  E-value=0.61  Score=29.42  Aligned_cols=82  Identities=12%  Similarity=0.229  Sum_probs=51.6

Q ss_pred             CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhcccC
Q 029414           52 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV  129 (194)
Q Consensus        52 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~L~~  129 (194)
                      -+|..+|-++......++.++..|.. .+.. ..|..+.+..+........+||+|++|...+  +-.+.++.+.+...+
T Consensus         2 irVLvVDD~~~~~~~l~~~L~~~g~~-~v~~-a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~~~~   79 (128)
T d2r25b1           2 VKILVVEDNHVNQEVIKRMLNLEGIE-NIEL-ACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGY   79 (128)
T ss_dssp             SCEEEECSCHHHHHHHHHHHHHTTCC-CEEE-ESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHcCCe-EEEE-EcChHHHHHHHHhhhhccCCCCEEEEEeCCCCCCHHHHHHHHHHccCC
Confidence            37889999999999999999988864 4553 3565554433311000146899999997633  345566666544444


Q ss_pred             Ce-EEEE
Q 029414          130 GG-IAVY  135 (194)
Q Consensus       130 gG-~lv~  135 (194)
                      .- +|++
T Consensus        80 ~~piI~l   86 (128)
T d2r25b1          80 TSPIVAL   86 (128)
T ss_dssp             CSCEEEE
T ss_pred             CCeEEEE
Confidence            43 3444

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=90.87  E-value=1.1  Score=27.77  Aligned_cols=78  Identities=6%  Similarity=0.067  Sum_probs=52.3

Q ss_pred             CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhcccC
Q 029414           52 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV  129 (194)
Q Consensus        52 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~L~~  129 (194)
                      -+|..+|-++...+..+..++..|.  .+.. ..++.+.+..+..    ...||+|++|...+  +-.++++.+.+.-+.
T Consensus         3 ~rILvVdDd~~~~~~l~~~L~~~g~--~v~~-~~~~~~al~~l~~----~~~~dliilD~~lp~~~G~el~~~ir~~~~~   75 (118)
T d2b4aa1           3 FRVTLVEDEPSHATLIQYHLNQLGA--EVTV-HPSGSAFFQHRSQ----LSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQ   75 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEEE-ESSHHHHHHTGGG----GGSCSEEEEETTCTTSCHHHHHHHHTTSSSC
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCC--CeEE-ECCHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence            5799999999999999999998875  3443 3465665554421    25799999998733  345666666544332


Q ss_pred             CeEEEEe
Q 029414          130 GGIAVYD  136 (194)
Q Consensus       130 gG~lv~~  136 (194)
                      =.+|++.
T Consensus        76 ~pii~lt   82 (118)
T d2b4aa1          76 PSVLILT   82 (118)
T ss_dssp             CEEEEEE
T ss_pred             CcEEEEE
Confidence            3555553

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=90.73  E-value=0.096  Score=34.56  Aligned_cols=90  Identities=12%  Similarity=-0.005  Sum_probs=55.1

Q ss_pred             eEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCc--EEEEecchHHHHHHHhhcCCCCCce
Q 029414           29 KTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK--INFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        29 ~vLeiG~G~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      +|+-+|+|. |. .+..|++.   +..|+.++.+++..+..+.    .+....  ......+..+.          .+.+
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~---G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----------~~~~   64 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQ---GHEVQGWLRVPQPYCSVNL----VETDGSIFNESLTANDPDF----------LATS   64 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT---TCEEEEECSSCCSEEEEEE----ECTTSCEEEEEEEESCHHH----------HHTC
T ss_pred             EEEEECcCHHHHHHHHHHHHC---CCceEEEEcCHHHhhhhcc----ccCCccccccccccchhhh----------hccc
Confidence            688899865 32 34444443   5689999988764443211    111111  11222222221          1469


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEE
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  135 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  135 (194)
                      |+|++-....+....++.+.++++++..++.
T Consensus        65 D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~   95 (167)
T d1ks9a2          65 DLLLVTLKAWQVSDAVKSLASTLPVTTPILL   95 (167)
T ss_dssp             SEEEECSCGGGHHHHHHHHHTTSCTTSCEEE
T ss_pred             ceEEEeecccchHHHHHhhccccCcccEEee
Confidence            9999987777788889999999998876665

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=90.73  E-value=1.1  Score=27.68  Aligned_cols=75  Identities=13%  Similarity=0.129  Sum_probs=51.3

Q ss_pred             CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhcccC
Q 029414           52 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKV  129 (194)
Q Consensus        52 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~~  129 (194)
                      .+|..+|-++......++.++..|.  .+. ...++.+.+..+.     ...||+|++|...  .+-.++++.+.+ ..+
T Consensus         2 krILvVDD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~~~-----~~~~dlillD~~mP~~~G~el~~~lr~-~~~   72 (119)
T d1peya_           2 EKILIVDDQSGIRILLNEVFNKEGY--QTF-QAANGLQALDIVT-----KERPDLVLLDMKIPGMDGIEILKRMKV-IDE   72 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESCCTTCCHHHHHHHHHH-HCT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCC--EEE-EeCCHHHHHHHHH-----hCCCCEEEEeccCCCCCHHHHHHHHHH-hCC
Confidence            4899999999999999999998875  233 4456666655543     2579999999763  334566666644 345


Q ss_pred             Ce-EEEE
Q 029414          130 GG-IAVY  135 (194)
Q Consensus       130 gG-~lv~  135 (194)
                      +- +|++
T Consensus        73 ~~pvi~l   79 (119)
T d1peya_          73 NIRVIIM   79 (119)
T ss_dssp             TCEEEEE
T ss_pred             CCcEEEE
Confidence            53 4444

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.51  E-value=0.77  Score=31.00  Aligned_cols=77  Identities=10%  Similarity=0.013  Sum_probs=49.4

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG  102 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  102 (194)
                      ++++||-.|++.|.   .+..+++.   +.+|+.++.+++..+...+.+....-......-..|..+. .+.      -+
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~------~~   91 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGE---GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASR-AEA------VK   91 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHH-HHH------TT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhh---ccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHH-HHH------hc
Confidence            68999999976553   33445543   6799999999998888877776543111233333444343 333      36


Q ss_pred             ceeEEEEeCC
Q 029414          103 SFDYAFVDAD  112 (194)
Q Consensus       103 ~fD~i~id~~  112 (194)
                      ..|+++..+.
T Consensus        92 ~iDilin~Ag  101 (191)
T d1luaa1          92 GAHFVFTAGA  101 (191)
T ss_dssp             TCSEEEECCC
T ss_pred             CcCeeeecCc
Confidence            7898887644

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=90.26  E-value=1.1  Score=31.86  Aligned_cols=81  Identities=16%  Similarity=0.203  Sum_probs=50.6

Q ss_pred             cCCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcC-
Q 029414           25 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-   98 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~-   98 (194)
                      .+++.+|-.|++.|.   .+..|++   .+.+|+.+|.+++.++.+.+.+..   ...+.++..|..+  ....+..+. 
T Consensus         4 L~gKvalITGas~GIG~aia~~la~---~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVR---YGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTI   77 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHH
Confidence            367889999987663   3334444   367999999998888777666643   3467788877532  122211100 


Q ss_pred             CCCCceeEEEEeC
Q 029414           99 ENEGSFDYAFVDA  111 (194)
Q Consensus        99 ~~~~~fD~i~id~  111 (194)
                      ...++.|.++..+
T Consensus        78 ~~~g~iD~lVnnA   90 (268)
T d2bgka1          78 AKHGKLDIMFGNV   90 (268)
T ss_dssp             HHHSCCCEEEECC
T ss_pred             HHcCCcceecccc
Confidence            1136899888664

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.83  E-value=1.3  Score=27.27  Aligned_cols=77  Identities=12%  Similarity=0.058  Sum_probs=51.4

Q ss_pred             CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhcccC
Q 029414           52 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV  129 (194)
Q Consensus        52 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~L~~  129 (194)
                      .+|..+|-++...+..+..++..|.  .+. ...++.+.+..+.     ..+||+|++|...+  +-..++..+...-..
T Consensus         3 krILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~-----~~~~dlillD~~mp~~~G~~~~~~~r~~~~~   74 (121)
T d1mvoa_           3 KKILVVDDEESIVTLLQYNLERSGY--DVI-TASDGEEALKKAE-----TEKPDLIVLDVMLPKLDGIEVCKQLRQQKLM   74 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----cccccEEEecccccCCCCchhhhhhhccCCC
Confidence            4899999999999999999998885  344 3456666655553     25799999997633  334555555443332


Q ss_pred             CeEEEEe
Q 029414          130 GGIAVYD  136 (194)
Q Consensus       130 gG~lv~~  136 (194)
                      -.++++.
T Consensus        75 ~~ii~lt   81 (121)
T d1mvoa_          75 FPILMLT   81 (121)
T ss_dssp             CCEEEEE
T ss_pred             CEEEEEE
Confidence            3445543

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=89.56  E-value=2.9  Score=31.75  Aligned_cols=123  Identities=12%  Similarity=0.097  Sum_probs=77.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .+|-...+=..++.+..+...+-..+|.+..+..+...++++.+|++.+.-- ......+..+.+.|+  .++++..+-.
T Consensus        61 ~nPT~~~LE~~la~LEgg~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi--~~~~vd~~d~  138 (397)
T d1y4ia1          61 GNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI--NVRFVDAGKP  138 (397)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTC--EEEEECTTSH
T ss_pred             CCHHHHHHHHHHHHHhCCccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCce--EeeccCCCCH
Confidence            4566677777777787888888899988887777767777788888877533 345566666777776  4677665434


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhccc-CCeEEEEeccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLK-VGGIAVYDNTL  139 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~  139 (194)
                      +.+....     .+.-.+||+..+  +.-....++.+.+..+ .|..+++||+.
T Consensus       139 ~~~~~~i-----~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~  187 (397)
T d1y4ia1         139 EEIRAAM-----RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF  187 (397)
T ss_dssp             HHHHHHC-----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred             HHHHHhc-----CCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcc
Confidence            4333321     356889999865  1111111233333333 35666677764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.27  E-value=1.7  Score=30.67  Aligned_cols=83  Identities=19%  Similarity=0.203  Sum_probs=52.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcC-CCC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-ENE  101 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~-~~~  101 (194)
                      +++++|-.|.+.|. +..+|+.+ ..+.+|+.++.+++.++.+.+.++..+  .++..+.+|..+  ....+..+. ...
T Consensus        10 ~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          10 DGKCAIITGAGAGI-GKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETTTTSHH-HHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            67888888876553 33333222 136899999999999998888888765  367888888543  112211110 113


Q ss_pred             CceeEEEEeC
Q 029414          102 GSFDYAFVDA  111 (194)
Q Consensus       102 ~~fD~i~id~  111 (194)
                      ++.|.++..+
T Consensus        87 g~iDilvnnA   96 (255)
T d1fmca_          87 GKVDILVNNA   96 (255)
T ss_dssp             SSCCEEEECC
T ss_pred             CCCCEeeeCC
Confidence            6899887664

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=89.23  E-value=3.5  Score=31.18  Aligned_cols=124  Identities=10%  Similarity=0.029  Sum_probs=76.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHhHHHHHHHcCCCCcEEEEecch
Q 029414            9 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEA   87 (194)
Q Consensus         9 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~   87 (194)
                      ..+|-...+=..++.+..+..++-..+|....+..+...++++.+|++.+. ........++.+.+.|+  .+.++..+-
T Consensus        55 ~~nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi--~~~~~d~~d  132 (391)
T d1cl1a_          55 RGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV--TTSWFDPLI  132 (391)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTC--EEEEECTTC
T ss_pred             CCChhHHHHHHHHHHHhCCccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhccccccc--ccccccCcc
Confidence            346667777777888888888999999888776665555666888888764 33445555555566664  455555322


Q ss_pred             HHHHHHHhhcCCCCCceeEEEEeCC------ccccHHHHHHHHhcccCCeEEEEecccc
Q 029414           88 LSVLDQLLKYSENEGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNTLW  140 (194)
Q Consensus        88 ~~~~~~~~~~~~~~~~fD~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  140 (194)
                      .+.+...     -.+.-.+||+...      ..+. +.+..+.+.-++|..+++||+.-
T Consensus       133 ~~~~~~~-----i~~~t~~i~~EtpsNP~l~v~Di-~~i~~~a~~~~~g~~~vVDnT~a  185 (391)
T d1cl1a_         133 GADIVKH-----LQPNTKIVFLESPGSITMEVHDV-PAIVAAVRSVVPDAIIMIDNTWA  185 (391)
T ss_dssp             GGGGGGT-----CCTTEEEEEEESSCTTTCCCCCH-HHHHHHHHHHCTTCEEEEECTTT
T ss_pred             ccccccc-----cccccceeeecccCccccccccc-HHHHHHHHhccCCcEEEEecccc
Confidence            2222221     1356889998854      2233 33333334445688899988753

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=89.07  E-value=2.4  Score=32.17  Aligned_cols=122  Identities=15%  Similarity=0.131  Sum_probs=74.3

Q ss_pred             CHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-cchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           11 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        11 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      +|-...+=..++.+..+...+-..+|.+..+..+...++++.+|++.+.- .......+..+.+.|+  .++++...-.+
T Consensus        58 nPT~~~LE~~la~LEg~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi--~~~~~d~~d~~  135 (392)
T d1gc0a_          58 NPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV--KLRHVDMADLQ  135 (392)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTC--EEEEECTTCHH
T ss_pred             ChHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCc--ccccCCccCHH
Confidence            45566666677777788889999999998877776666667888887743 3455556666666775  46666543333


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhccc-CCeEEEEeccc
Q 029414           90 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLK-VGGIAVYDNTL  139 (194)
Q Consensus        90 ~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~  139 (194)
                      .+....     .+.-++||+..+  +.-....++.+.+..+ .|-.+++||+.
T Consensus       136 ~~~~ai-----~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~  183 (392)
T d1gc0a_         136 ALEAAM-----TPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTY  183 (392)
T ss_dssp             HHHHHC-----CTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTT
T ss_pred             HHHHhC-----CCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCc
Confidence            333321     356789998864  1111112233333333 45666777753

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=88.79  E-value=2.5  Score=29.67  Aligned_cols=80  Identities=13%  Similarity=0.117  Sum_probs=50.8

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--HHHHhhcC-C
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-E   99 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~   99 (194)
                      +++.+|-.|.+.|.   .+..|++.   +.+|+.++.+++.++.+.+.+.   ...++.++.+|..+.  ...+..+. .
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~---Ga~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEE---GAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEK   78 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            57888888876663   34445553   6799999999988877776663   235788888886431  12211110 1


Q ss_pred             CCCceeEEEEeC
Q 029414          100 NEGSFDYAFVDA  111 (194)
Q Consensus       100 ~~~~fD~i~id~  111 (194)
                      ..++.|.++..+
T Consensus        79 ~~G~iDiLVnnA   90 (251)
T d1zk4a1          79 AFGPVSTLVNNA   90 (251)
T ss_dssp             HHSSCCEEEECC
T ss_pred             HhCCceEEEecc
Confidence            137899877664

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=88.10  E-value=2.4  Score=27.93  Aligned_cols=95  Identities=13%  Similarity=0.038  Sum_probs=53.4

Q ss_pred             eEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 029414           29 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  107 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i  107 (194)
                      +|-=||.  |..+..||..+- .+.+|++.|.+++..+...+.-    .......-.....+....       -...|.+
T Consensus         4 nIg~IGl--G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~-------~~~~~~i   70 (176)
T d2pgda2           4 DIALIGL--AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANE----AKGTKVLGAHSLEEMVSK-------LKKPRRI   70 (176)
T ss_dssp             SEEEECC--SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTT----TTTSSCEECSSHHHHHHH-------BCSSCEE
T ss_pred             cEEEEeE--hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhc----cccccccchhhhhhhhhh-------hcccceE
Confidence            4555666  555555554442 2568999999998777654432    111111112233333333       2456777


Q ss_pred             EEeCC-ccccHHHHHHHHhcccCCeEEEEe
Q 029414          108 FVDAD-KDNYCNYHERLMKLLKVGGIAVYD  136 (194)
Q Consensus       108 ~id~~-~~~~~~~~~~~~~~L~~gG~lv~~  136 (194)
                      ++... .......++.+...+++|.+++-.
T Consensus        71 i~~~~~~~~v~~v~~~l~~~~~~g~iiid~  100 (176)
T d2pgda2          71 ILLVKAGQAVDNFIEKLVPLLDIGDIIIDG  100 (176)
T ss_dssp             EECSCTTHHHHHHHHHHHHHCCTTCEEEEC
T ss_pred             EEecCchHHHHHHHHHHHhccccCcEEEec
Confidence            66543 445566777888899987765543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.06  E-value=3.1  Score=29.15  Aligned_cols=80  Identities=15%  Similarity=0.147  Sum_probs=53.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHhhcC
Q 029414           26 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS   98 (194)
Q Consensus        26 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~   98 (194)
                      +.+.+|-.|.+.| .+..+|+.+. .+.+|+.++.+++.++.+.+.++..+  .++..+..|..+      .......  
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~--   83 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILT--   83 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH--
Confidence            4677888887655 4444444332 36799999999999998888887665  368888887643      2222222  


Q ss_pred             CCCCceeEEEEeC
Q 029414           99 ENEGSFDYAFVDA  111 (194)
Q Consensus        99 ~~~~~fD~i~id~  111 (194)
                       +.+.+|.++..+
T Consensus        84 -~~g~iDilvnna   95 (251)
T d2c07a1          84 -EHKNVDILVNNA   95 (251)
T ss_dssp             -HCSCCCEEEECC
T ss_pred             -hcCCceeeeecc
Confidence             247899887664

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.96  E-value=1.9  Score=26.59  Aligned_cols=76  Identities=11%  Similarity=0.130  Sum_probs=51.9

Q ss_pred             CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhcccC
Q 029414           52 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKV  129 (194)
Q Consensus        52 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~~  129 (194)
                      -+|..+|-++...+..++.+...|.  .+. ...++.+.+..+.     ..+||+|++|...  .+-..+++.+.+. .+
T Consensus         2 irILiVdDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~-----~~~~dlillD~~mp~~~g~~~~~~lr~~-~~   72 (122)
T d1kgsa2           2 VRVLVVEDERDLADLITEALKKEMF--TVD-VCYDGEEGMYMAL-----NEPFDVVILDIMLPVHDGWEILKSMRES-GV   72 (122)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHHT-TC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EEcchHHHHHHHH-----hhCccccccccccccchhHHHHHHHHhc-CC
Confidence            4789999999999999999998875  344 4467766665553     3689999999763  3444555655433 33


Q ss_pred             C-eEEEEe
Q 029414          130 G-GIAVYD  136 (194)
Q Consensus       130 g-G~lv~~  136 (194)
                      . -+|++.
T Consensus        73 ~~piI~lt   80 (122)
T d1kgsa2          73 NTPVLMLT   80 (122)
T ss_dssp             CCCEEEEE
T ss_pred             CCcEEEEc
Confidence            4 345443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.87  E-value=2.5  Score=27.81  Aligned_cols=127  Identities=13%  Similarity=0.053  Sum_probs=68.4

Q ss_pred             EEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414           30 TIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  108 (194)
Q Consensus        30 vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~  108 (194)
                      |-=||+  |..+..+|+.+- .+..|++.|.+++..+...+........++... ..+...+....       ...+.+.
T Consensus         4 IGvIGl--G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~   73 (178)
T d1pgja2           4 VGVVGL--GVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETMEAFAASL-------KKPRKAL   73 (178)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCHHHHHHHB-------CSSCEEE
T ss_pred             EEEEee--hHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhh-hhhhhHHHHhc-------ccceEEE
Confidence            444555  555555544441 256899999998877766655433332223333 23333444332       2333343


Q ss_pred             EeC-CccccHHHHHHHHhcccCCeEEEEecccccccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecCCe
Q 029414          109 VDA-DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG  186 (194)
Q Consensus       109 id~-~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G  186 (194)
                      ... ........+......+++|.+++-....                   .....+++.+.+. ...+...--|+..|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~iii~~st~-------------------~~~~~~~~~~~l~-~~~~~~ldapv~g~  132 (178)
T d1pgja2          74 ILVQAGAATDSTIEQLKKVFEKGDILVDTGNA-------------------HFKDQGRRAQQLE-AAGLRFLGMGISGG  132 (178)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCC-------------------CHHHHHHHHHHHH-TTTCEEEEEEEESH
T ss_pred             EeecCcchhhhhhhhhhhhccccceecccCcc-------------------chhHHHHHHHHHh-hcceeEecccccCC
Confidence            332 2344455667788889988877664332                   1122456666665 44566666666543

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.84  E-value=1.7  Score=27.39  Aligned_cols=66  Identities=12%  Similarity=0.135  Sum_probs=48.0

Q ss_pred             CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHh
Q 029414           51 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK  125 (194)
Q Consensus        51 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~  125 (194)
                      +-+|..+|-++......++.++..|.  .+. ...+..+.+..+      ...||+|++|...+  +-.+..+.+.+
T Consensus         7 g~rILvVDD~~~~~~~l~~~L~~~G~--~v~-~a~~g~eal~~l------~~~~dlillD~~mP~~dG~el~~~ir~   74 (134)
T d1dcfa_           7 GLKVLVMDENGVSRMVTKGLLVHLGC--EVT-TVSSNEECLRVV------SHEHKVVFMDVCMPGVENYQIALRIHE   74 (134)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHC------CTTCSEEEEECCSSTTTTTHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHh------hcCCCeEEEEeccCCCchHHHHHHHHH
Confidence            57999999999999999999999885  344 446777776654      35799999997633  33445555543

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.54  E-value=2  Score=26.50  Aligned_cols=70  Identities=17%  Similarity=0.088  Sum_probs=48.3

Q ss_pred             EEEEEeCCcchHHhHHHHHHHcCCCCcEEE--EecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhccc
Q 029414           53 QITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK  128 (194)
Q Consensus        53 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~--~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~L~  128 (194)
                      +|..+|-++...+..++.+...+   ....  ...+..+.+..+.     ...||+|++|...+  +-.++++.+.+...
T Consensus         3 rILivDD~~~~~~~l~~~L~~~~---~~~~v~~a~~g~~al~~~~-----~~~~dlillD~~mP~~dG~e~~~~ir~~~~   74 (123)
T d1dz3a_           3 KVCIADDNRELVSLLDEYISSQP---DMEVIGTAYNGQDCLQMLE-----EKRPDILLLDIIMPHLDGLAVLERIRAGFE   74 (123)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTST---TEEEEEEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHHHHCS
T ss_pred             EEEEEeCCHHHHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHH-----hcCCCEEEEcCCCCCCCHHHHHHHHHhcCC
Confidence            68889999999999999887654   3332  3457767665553     25799999998743  44567777765444


Q ss_pred             CC
Q 029414          129 VG  130 (194)
Q Consensus       129 ~g  130 (194)
                      ..
T Consensus        75 ~~   76 (123)
T d1dz3a_          75 HQ   76 (123)
T ss_dssp             SC
T ss_pred             CC
Confidence            33

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.25  E-value=3.5  Score=28.88  Aligned_cols=78  Identities=14%  Similarity=0.082  Sum_probs=51.2

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHH-HcCCCCcEEEEecchHH------HHHHHh
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALS------VLDQLL   95 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~------~~~~~~   95 (194)
                      +++++|-.|++.|.   .+..|++.   +.+|+.++.+++.++.+.+.+. ..+  .++..+.+|..+      ......
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~---Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~   78 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEA---GCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVK   78 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence            57889999987663   44455553   6799999999988877666554 344  367788887532      122221


Q ss_pred             hcCCCCCceeEEEEeC
Q 029414           96 KYSENEGSFDYAFVDA  111 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~  111 (194)
                      .+   .+++|.++..+
T Consensus        79 ~~---~g~iDiLVnnA   91 (251)
T d1vl8a_          79 EK---FGKLDTVVNAA   91 (251)
T ss_dssp             HH---HSCCCEEEECC
T ss_pred             HH---cCCCCEEEECC
Confidence            11   36899888664

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=87.14  E-value=3.6  Score=28.85  Aligned_cols=77  Identities=14%  Similarity=0.153  Sum_probs=51.4

Q ss_pred             CCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHhhc
Q 029414           27 AKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   97 (194)
Q Consensus        27 ~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~   97 (194)
                      +|.+|-.|++.|.   .+..|++.   +.+|+.++.+++.++.+.+.+...+.  ++..+.+|..+      ....... 
T Consensus         2 gKValITGas~GIG~aia~~la~~---Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~-   75 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKE---GLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVE-   75 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH-
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHH-
Confidence            4566777876553   33444443   67999999999999988888887653  68888887532      1222222 


Q ss_pred             CCCCCceeEEEEeC
Q 029414           98 SENEGSFDYAFVDA  111 (194)
Q Consensus        98 ~~~~~~fD~i~id~  111 (194)
                        ..++.|.++..+
T Consensus        76 --~~g~iDilVnnA   87 (257)
T d2rhca1          76 --RYGPVDVLVNNA   87 (257)
T ss_dssp             --HTCSCSEEEECC
T ss_pred             --HhCCCCEEEecc
Confidence              247899888664

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=86.80  E-value=3.4  Score=28.80  Aligned_cols=75  Identities=12%  Similarity=0.050  Sum_probs=48.1

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHhh
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK   96 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~   96 (194)
                      +++++|-.|.+.|.   .+..|++.   +.+|+.++.+++.++...+.+.     .+...+..|..+      .......
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~---G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~   74 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAAR---GAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRA   74 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhc
Confidence            56788888877663   34445543   6799999999988877766552     256677777532      2222222


Q ss_pred             cCCCCCceeEEEEeC
Q 029414           97 YSENEGSFDYAFVDA  111 (194)
Q Consensus        97 ~~~~~~~fD~i~id~  111 (194)
                      +   .++.|.++..+
T Consensus        75 ~---~g~iDilVnnA   86 (243)
T d1q7ba_          75 E---FGEVDILVNNA   86 (243)
T ss_dssp             H---TCSCSEEEECC
T ss_pred             c---cCCcceehhhh
Confidence            2   47899888664

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=86.76  E-value=0.97  Score=30.27  Aligned_cols=93  Identities=13%  Similarity=0.160  Sum_probs=58.9

Q ss_pred             CCeEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           27 AKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        27 ~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      +.+||-.|..  .|..++.+|+.+  +.+|+++..+++..+.+++.    +.+   .++.-+..+....+     ....+
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~l----Gad---~vi~~~~~~~~~~l-----~~~~~   97 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKSL----GAS---RVLPRDEFAESRPL-----EKQVW   97 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHH----TEE---EEEEGGGSSSCCSS-----CCCCE
T ss_pred             CCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHhh----ccc---cccccccHHHHHHH-----HhhcC
Confidence            3578876643  456788889885  68999999999887766643    422   22222211111111     13457


Q ss_pred             eEEEEeCCccccHHHHHHHHhcccCCeEEEEec
Q 029414          105 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      |.+ +|...   ...+...++.|+++|.++.-.
T Consensus        98 ~~v-vD~Vg---g~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2          98 AGA-IDTVG---DKVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             EEE-EESSC---HHHHHHHHHTEEEEEEEEECC
T ss_pred             Cee-EEEcc---hHHHHHHHHHhccccceEeec
Confidence            876 56543   245788999999999999853

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.74  E-value=3.7  Score=28.63  Aligned_cols=77  Identities=12%  Similarity=0.149  Sum_probs=47.8

Q ss_pred             CCCeEEEEccc----ccH-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHH
Q 029414           26 NAKKTIEIGVF----TGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQL   94 (194)
Q Consensus        26 ~~~~vLeiG~G----~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~   94 (194)
                      +++++|-.|++    .|. .+..|++.   +.+|+..+.+++..+.+++.....+   +...+..|..+      .....
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~---Ga~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~   80 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEA---GAEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAGV   80 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHC---CCEEEEEeCcHHHHHHHHHhhhccC---cccccccccCCHHHHHHHHHHH
Confidence            67899999953    454 55556654   6799999998877776666555444   45566666532      22222


Q ss_pred             hhcCCCCCceeEEEEeC
Q 029414           95 LKYSENEGSFDYAFVDA  111 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~  111 (194)
                      ..+   .++.|.++-..
T Consensus        81 ~~~---~g~iDilVnna   94 (256)
T d1ulua_          81 KEA---FGGLDYLVHAI   94 (256)
T ss_dssp             HHH---HSSEEEEEECC
T ss_pred             HHh---cCCceEEEecc
Confidence            111   36899777543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.71  E-value=3.7  Score=28.59  Aligned_cols=74  Identities=12%  Similarity=0.124  Sum_probs=48.2

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcCCC
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSEN  100 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~  100 (194)
                      +++++|-.|++.|.   .+..|++.   +.+|+.+|.+++.++...+.+   +   ++..+..|..+  .......+   
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~---G~~V~~~~r~~~~l~~~~~~~---~---~~~~~~~Dv~d~~~v~~~~~~---   73 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHAT---GARVVAVSRTQADLDSLVREC---P---GIEPVCVDLGDWEATERALGS---   73 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHS---T---TCEEEECCTTCHHHHHHHHTT---
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhc---C---CCeEEEEeCCCHHHHHHHHHH---
Confidence            67899999987763   44445553   679999999987776555433   2   46666777543  23333322   


Q ss_pred             CCceeEEEEeC
Q 029414          101 EGSFDYAFVDA  111 (194)
Q Consensus       101 ~~~fD~i~id~  111 (194)
                      .++.|.++..+
T Consensus        74 ~g~iDilVnnA   84 (244)
T d1pr9a_          74 VGPVDLLVNNA   84 (244)
T ss_dssp             CCCCCEEEECC
T ss_pred             hCCceEEEecc
Confidence            57899887654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=86.66  E-value=3.8  Score=28.77  Aligned_cols=79  Identities=13%  Similarity=0.114  Sum_probs=53.4

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHhh
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK   96 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~   96 (194)
                      +++++|-.|++.|.   .+..|++.   +.+|+.+|.+++.++.+.+.+...+  .++..+.+|..+      .......
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~---Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASL---GASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVAN   81 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHH
Confidence            57889998987663   34445553   6799999999999988888887765  367788887532      1222211


Q ss_pred             cCCCCCceeEEEEeC
Q 029414           97 YSENEGSFDYAFVDA  111 (194)
Q Consensus        97 ~~~~~~~fD~i~id~  111 (194)
                      +  ..++.|+++..+
T Consensus        82 ~--~~~~idilvnnA   94 (259)
T d2ae2a_          82 H--FHGKLNILVNNA   94 (259)
T ss_dssp             H--TTTCCCEEEECC
T ss_pred             H--hCCCceEEEECC
Confidence            1  123699888664

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.60  E-value=3.9  Score=28.77  Aligned_cols=80  Identities=16%  Similarity=0.088  Sum_probs=54.2

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHhh
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK   96 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~   96 (194)
                      +++++|-.|++.|.   .+..|++.   +.+|+.++.+++.++.+.+.+...+  .++..+..|..+      .......
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~---Ga~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGF---GAVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSS   81 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHH
Confidence            57889999987764   44445553   6799999999999988888887665  368888887532      1222211


Q ss_pred             cCCCCCceeEEEEeCC
Q 029414           97 YSENEGSFDYAFVDAD  112 (194)
Q Consensus        97 ~~~~~~~fD~i~id~~  112 (194)
                      +  ..+..|+++..+.
T Consensus        82 ~--~~g~idilvnnAG   95 (259)
T d1xq1a_          82 M--FGGKLDILINNLG   95 (259)
T ss_dssp             H--HTTCCSEEEEECC
T ss_pred             H--hCCCccccccccc
Confidence            1  0257898887643

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.35  E-value=0.94  Score=32.05  Aligned_cols=64  Identities=8%  Similarity=-0.005  Sum_probs=44.1

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   89 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   89 (194)
                      +++.+|-.|++.|.   .+..||+....+.+|+.++.+++.++.+.+.+...+...++..+.+|..+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~   71 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT   71 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCC
Confidence            34556666766553   33445543344789999999999999888888765544578888888643

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=86.31  E-value=1.2  Score=26.11  Aligned_cols=81  Identities=12%  Similarity=-0.005  Sum_probs=44.5

Q ss_pred             CCCeEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 029414           26 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF  104 (194)
Q Consensus        26 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~f  104 (194)
                      +.++|+-+|.| +|.++..++..  .+.+|++.|..+.....  +.+     ...+.+..+...+.  .+       ..+
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~--~g~~v~~~D~~~~~~~~--~~~-----~~~~~~~~~~~~~~--~~-------~~~   65 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRMTPPGL--DKL-----PEAVERHTGSLNDE--WL-------MAA   65 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH--TTCCCEEEESSSSCTTG--GGS-----CTTSCEEESBCCHH--HH-------HHC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHH--CCCEEEEeeCCcCchhH--HHH-----hhccceeecccchh--hh-------ccC
Confidence            56889999986 45454444443  26799999985532211  111     12333444332221  11       358


Q ss_pred             eEEEEeCCccccHHHHHHHH
Q 029414          105 DYAFVDADKDNYCNYHERLM  124 (194)
Q Consensus       105 D~i~id~~~~~~~~~~~~~~  124 (194)
                      |+|++.+..+.....++.+.
T Consensus        66 d~vi~SPGi~~~~~~~~~a~   85 (93)
T d2jfga1          66 DLIVASPGIALAHPSLSAAA   85 (93)
T ss_dssp             SEEEECTTSCTTSHHHHHHH
T ss_pred             CEEEECCCCCCCCHHHHHHH
Confidence            99999877544445555543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=86.12  E-value=3.9  Score=28.36  Aligned_cols=78  Identities=12%  Similarity=0.059  Sum_probs=47.2

Q ss_pred             cCCCeEEEEcccc--c--H-HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHH
Q 029414           25 VNAKKTIEIGVFT--G--Y-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQ   93 (194)
Q Consensus        25 ~~~~~vLeiG~G~--G--~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~   93 (194)
                      .+++++|-.|++.  |  . .+..|++.   +.+|+..+.+++..+.+++.....+.   ......|..+      ....
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~---G~~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   76 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHRE---GAELAFTYQNDKLKGRVEEFAAQLGS---DIVLQCDVAEDASIDTMFAE   76 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHT---TCEEEEEESSTTTHHHHHHHHHHTTC---CCEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHhhcCC---cceeecccchHHHHHHHHHH
Confidence            3678899988754  4  3 44556653   67999999998877777776665552   3333333221      1122


Q ss_pred             HhhcCCCCCceeEEEEeC
Q 029414           94 LLKYSENEGSFDYAFVDA  111 (194)
Q Consensus        94 ~~~~~~~~~~fD~i~id~  111 (194)
                      ..   ...+..|.++...
T Consensus        77 ~~---~~~~~~d~~v~~a   91 (258)
T d1qsga_          77 LG---KVWPKFDGFVHSI   91 (258)
T ss_dssp             HH---TTCSSEEEEEECC
T ss_pred             hh---hcccccceEEEee
Confidence            22   2356788877553

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.84  E-value=3.7  Score=29.23  Aligned_cols=79  Identities=16%  Similarity=0.133  Sum_probs=50.4

Q ss_pred             CCCeEEEEccccc---HHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH------HHHHhh
Q 029414           26 NAKKTIEIGVFTG---YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLK   96 (194)
Q Consensus        26 ~~~~vLeiG~G~G---~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~   96 (194)
                      +++++|-.|+..|   ..+..|++.   +.+|+.+|.+.+.++.+.+.+.... ..++..+..|..+.      ......
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~---Ga~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~   99 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSL---GAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIK   99 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhh
Confidence            5688999997665   244445543   6799999999988877766664432 23677777775331      112221


Q ss_pred             cCCCCCceeEEEEeC
Q 029414           97 YSENEGSFDYAFVDA  111 (194)
Q Consensus        97 ~~~~~~~fD~i~id~  111 (194)
                         ..+..|.++..+
T Consensus       100 ---~~g~iDilvnnA  111 (294)
T d1w6ua_         100 ---VAGHPNIVINNA  111 (294)
T ss_dssp             ---HTCSCSEEEECC
T ss_pred             ---hccccchhhhhh
Confidence               247899887664

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=85.68  E-value=2.7  Score=26.17  Aligned_cols=68  Identities=6%  Similarity=0.054  Sum_probs=47.4

Q ss_pred             CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHh
Q 029414           51 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK  125 (194)
Q Consensus        51 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~  125 (194)
                      .-+|..+|-++......++.+...|.. .+. ...+..+.+..+.     ..+||+|++|...+  +-.++++.+.+
T Consensus         6 ~~kILiVDD~~~~~~~l~~~L~~~g~~-~v~-~a~~~~~al~~l~-----~~~~dlii~D~~mP~~~G~el~~~lr~   75 (129)
T d1p6qa_           6 KIKVLIVDDQVTSRLLLGDALQQLGFK-QIT-AAGDGEQGMKIMA-----QNPHHLVISDFNMPKMDGLGLLQAVRA   75 (129)
T ss_dssp             CCCEEEECSSHHHHHHHHHHHHTTTCS-CEE-CCSSHHHHHHHHH-----TSCCSEEEECSSSCSSCHHHHHHHHTT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCe-EEE-EECCHHHHHHHHH-----hCCCCeEEeeeecCCCChHHHHHHHHh
Confidence            458999999999999999999988753 222 2346666555542     36799999997633  34555665543

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=85.50  E-value=2.6  Score=25.84  Aligned_cols=65  Identities=15%  Similarity=0.120  Sum_probs=46.9

Q ss_pred             EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHh
Q 029414           53 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMK  125 (194)
Q Consensus        53 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~  125 (194)
                      +|..+|-++...+..+..++..|+  .+. ...++.+.+..+.     ...||+|++|...  .+-.++++.+.+
T Consensus         2 kILiVDD~~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~-----~~~~dlil~D~~mp~~~G~~l~~~lr~   68 (121)
T d1zesa1           2 RILVVEDEAPIREMVCFVLEQNGF--QPV-EAEDYDSAVNQLN-----EPWPDLILLDWMLPGGSGIQFIKHLKR   68 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EECSHHHHHHHSS-----SSCCSEEEECSSCTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECChHHHHHHHH-----ccCCCEEEeecCCCCCCHHHHHHHHHh
Confidence            688999999999999999998875  233 3457767666652     4689999999763  344555666643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.48  E-value=4.5  Score=28.48  Aligned_cols=105  Identities=16%  Similarity=0.206  Sum_probs=63.6

Q ss_pred             cCCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCC-cchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHH
Q 029414           25 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALS------VLDQL   94 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~   94 (194)
                      .+++++|-.|+..|.   .+..|++.   +.+|+..+.+ .+.++.+.+.+...+.  ++..+..|..+      .+...
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~---Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~   90 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRR---GCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEA   90 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT---TCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc---CCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHH
Confidence            367889998887663   44455553   6799998876 4566667777776653  67788777533      12222


Q ss_pred             hhcCCCCCceeEEEEeCCc-----------ccc-----------HHHHHHHHhcccCCeEEEEec
Q 029414           95 LKYSENEGSFDYAFVDADK-----------DNY-----------CNYHERLMKLLKVGGIAVYDN  137 (194)
Q Consensus        95 ~~~~~~~~~fD~i~id~~~-----------~~~-----------~~~~~~~~~~L~~gG~lv~~~  137 (194)
                      ..   ..+..|.++.....           ..+           ....+.+.+.|+.+|.+++-.
T Consensus        91 ~~---~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          91 VK---IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HH---HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HH---HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence            11   13678988766430           111           222455667777777766643

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=85.23  E-value=4.6  Score=28.30  Aligned_cols=78  Identities=14%  Similarity=0.066  Sum_probs=50.4

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHH-HcCCCCcEEEEecchHH------HHHHHh
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALS------VLDQLL   95 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~------~~~~~~   95 (194)
                      ++|++|-.|.+.|.   .+..|++.   +.+|+.++.+.+.++.+.+.+. ..+  .++..+.+|..+      ......
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~---Ga~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~   82 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAA---GANVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQID   82 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHT---TEEEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHH
Confidence            56888998976653   34445543   6799999999887776665553 344  368888887533      122222


Q ss_pred             hcCCCCCceeEEEEeC
Q 029414           96 KYSENEGSFDYAFVDA  111 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~  111 (194)
                      .   ..+..|.++..+
T Consensus        83 ~---~~g~iDilVnnA   95 (260)
T d1h5qa_          83 A---DLGPISGLIANA   95 (260)
T ss_dssp             H---HSCSEEEEEECC
T ss_pred             H---HhCCCcEecccc
Confidence            2   247899887664

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=85.20  E-value=4.6  Score=28.33  Aligned_cols=79  Identities=14%  Similarity=0.139  Sum_probs=53.0

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHH--H----HHHhh
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--L----DQLLK   96 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~----~~~~~   96 (194)
                      ++|++|-.|+..|.   .+..|++.   +.+|+.++.+++.++.+.+.+...+.  ++.++..|..+.  .    .....
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~---G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~   79 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGL---GARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAH   79 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHH
Confidence            67899999987663   34445553   67999999999998888888877763  577777775331  1    22221


Q ss_pred             cCCCCCceeEEEEeC
Q 029414           97 YSENEGSFDYAFVDA  111 (194)
Q Consensus        97 ~~~~~~~fD~i~id~  111 (194)
                      +  ..+..|+++..+
T Consensus        80 ~--~~g~idilinna   92 (258)
T d1ae1a_          80 V--FDGKLNILVNNA   92 (258)
T ss_dssp             H--TTSCCCEEEECC
T ss_pred             H--hCCCcEEEeccc
Confidence            1  125688877654

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.04  E-value=3.1  Score=26.16  Aligned_cols=74  Identities=12%  Similarity=0.113  Sum_probs=50.6

Q ss_pred             EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCC
Q 029414           53 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVG  130 (194)
Q Consensus        53 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~g  130 (194)
                      +|..+|-++......+..+...|+  .+. ...++.+.+..+.     ...||+|++|..  ..+-..+++.+... .|+
T Consensus         2 kILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~eAl~~l~-----~~~~dlvilD~~mp~~~G~e~~~~lr~~-~~~   72 (137)
T d1ny5a1           2 NVLVIEDDKVFRGLLEEYLSMKGI--KVE-SAERGKEAYKLLS-----EKHFNVVLLDLLLPDVNGLEILKWIKER-SPE   72 (137)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHHTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESBCSSSBHHHHHHHHHHH-CTT
T ss_pred             EEEEEecCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHhh-----ccccccchHHHhhhhhhHHHHHHHHHHh-CCC
Confidence            578899999999999999998875  344 3456666665553     257999999965  33445666666443 444


Q ss_pred             e-EEEE
Q 029414          131 G-IAVY  135 (194)
Q Consensus       131 G-~lv~  135 (194)
                      - +|++
T Consensus        73 ~piI~l   78 (137)
T d1ny5a1          73 TEVIVI   78 (137)
T ss_dssp             SEEEEE
T ss_pred             CCEEEE
Confidence            3 4444

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=84.98  E-value=1.9  Score=26.57  Aligned_cols=66  Identities=15%  Similarity=0.123  Sum_probs=47.2

Q ss_pred             CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHh
Q 029414           52 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMK  125 (194)
Q Consensus        52 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~  125 (194)
                      .+|..+|-++...+..++.++..|.  .+. ...++.+.+..+.     ...||+|++|...  .+-.++++.+.+
T Consensus         2 krILiVDD~~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~~-----~~~~dlil~D~~mp~~dG~el~~~ir~   69 (123)
T d1mb3a_           2 KKVLIVEDNELNMKLFHDLLEAQGY--ETL-QTREGLSALSIAR-----ENKPDLILMDIQLPEISGLEVTKWLKE   69 (123)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHH-----HHCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEEeccCCCcHHHHHHHHHh
Confidence            3789999999999999999998875  233 4467766665543     2579999999763  344555666644

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=84.94  E-value=1.3  Score=27.29  Aligned_cols=52  Identities=13%  Similarity=0.002  Sum_probs=35.1

Q ss_pred             HHcCCCeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc--------chHHhHHHHHHHcCC
Q 029414           23 RLVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNR--------ETYEIGLPIIKKAGV   76 (194)
Q Consensus        23 ~~~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~--------~~~~~a~~~~~~~~~   76 (194)
                      ....|++|+-+|.|  ..++.+|..+. .+.+|+.++..+        +..+.+++.+++.++
T Consensus        18 ~l~~p~~v~IiGgG--~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV   78 (117)
T d1onfa2          18 NIKESKKIGIVGSG--YIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNI   78 (117)
T ss_dssp             TCCCCSEEEEECCS--HHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTC
T ss_pred             ccCCCCEEEEECCc--hHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCC
Confidence            45568999999984  55555544442 267999999744        445667777777664

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.91  E-value=2.9  Score=25.74  Aligned_cols=76  Identities=12%  Similarity=0.013  Sum_probs=53.3

Q ss_pred             CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhccc
Q 029414           51 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLK  128 (194)
Q Consensus        51 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~  128 (194)
                      .++|..+|-++......++.++..|.  .+. ...++.+.+..+.     ...||+|++|...  .+-.++++.+.+. .
T Consensus         3 k~~ILIVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~a~~~l~-----~~~~dlii~D~~mp~~~G~el~~~l~~~-~   73 (123)
T d1krwa_           3 RGIVWVVDDDSSIRWVLERALAGAGL--TCT-TFENGNEVLAALA-----SKTPDVLLSDIRMPGMDGLALLKQIKQR-H   73 (123)
T ss_dssp             CCEEEEESSSHHHHHHHHHHHHHTTC--EEE-EESSSHHHHHHHT-----TCCCSEEEECCSSSSSTTHHHHHHHHHH-S
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHH-----hCCCCEEEehhhcCCchHHHHHHHHHHh-C
Confidence            46899999999999999999998875  344 3456667666652     4689999999763  3445666666543 4


Q ss_pred             CCeEEEE
Q 029414          129 VGGIAVY  135 (194)
Q Consensus       129 ~gG~lv~  135 (194)
                      |+--+++
T Consensus        74 ~~~piI~   80 (123)
T d1krwa_          74 PMLPVII   80 (123)
T ss_dssp             SSCCEEE
T ss_pred             CCCeEEE
Confidence            5533443

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.88  E-value=6.4  Score=29.67  Aligned_cols=121  Identities=17%  Similarity=0.181  Sum_probs=73.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHhHHHHHHHcCCCCcEEEEecchH
Q 029414           10 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL   88 (194)
Q Consensus        10 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~   88 (194)
                      .+|-+..+=..++.+..+...+-..+|....+..++. +.++.++++.+. .-......+..+.+.+.  .+.+...+. 
T Consensus        53 gnPT~~~lE~~la~LE~~~~a~~~sSGmaAi~~~l~~-l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi--~~~~~~~~~-  128 (393)
T d1n8pa_          53 QNPNRENLERAVAALENAQYGLAFSSGSATTATILQS-LPQGSHAVSIGDVYGGTHRYFTKVANAHGV--ETSFTNDLL-  128 (393)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHT-SCSSCEEEEESSCCHHHHHHHHHTSTTTCS--CCEEESSHH-
T ss_pred             CChHHHHHHHHHHHHhCCceEEEecCchhHHHhhhhc-ccCCCeeeeeeeecccchhhhhhhhhcccc--eeEEeecch-
Confidence            3566667777777788888899899988777665544 444778877654 33344445555555554  356665443 


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC------ccccHHHHHHHHhcc-cCCeEEEEeccc
Q 029414           89 SVLDQLLKYSENEGSFDYAFVDAD------KDNYCNYHERLMKLL-KVGGIAVYDNTL  139 (194)
Q Consensus        89 ~~~~~~~~~~~~~~~fD~i~id~~------~~~~~~~~~~~~~~L-~~gG~lv~~~~~  139 (194)
                      +.+....     .+.-.+||+..+      ..+....-+.+.++- +.|..+++||+.
T Consensus       129 ~~~~~~i-----~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~  181 (393)
T d1n8pa_         129 NDLPQLI-----KENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTF  181 (393)
T ss_dssp             HHHHHHS-----CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTT
T ss_pred             HHHHHHh-----hhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCc
Confidence            3334431     467889998864      334444444443333 456778888864

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.79  E-value=2.9  Score=25.69  Aligned_cols=76  Identities=11%  Similarity=0.076  Sum_probs=51.7

Q ss_pred             EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhcccCC
Q 029414           53 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVG  130 (194)
Q Consensus        53 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~~g  130 (194)
                      +|..+|-++...+..++.++..|+  .+. ...+..+.+..+.     ...||+|++|...  .+-..+++.+.+.-+.=
T Consensus         3 kILiVDD~~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~~~-----~~~~dlvl~D~~mP~~~G~el~~~ir~~~~~~   74 (121)
T d1ys7a2           3 RVLVVDDDSDVLASLERGLRLSGF--EVA-TAVDGAEALRSAT-----ENRPDAIVLDINMPVLDGVSVVTALRAMDNDV   74 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESSCSSSCHHHHHHHHHHTTCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEEeeccCcccHHHHHHHHhcCCCC
Confidence            799999999999999999998875  344 4456666665553     3679999999763  34456666665433222


Q ss_pred             eEEEEe
Q 029414          131 GIAVYD  136 (194)
Q Consensus       131 G~lv~~  136 (194)
                      -+|++.
T Consensus        75 piI~lt   80 (121)
T d1ys7a2          75 PVCVLS   80 (121)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            344443

>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Methylesterase CheB, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.56  E-value=3.3  Score=26.10  Aligned_cols=77  Identities=16%  Similarity=0.137  Sum_probs=51.6

Q ss_pred             CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEE-EecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhcc
Q 029414           51 DGQITAIDVNRETYEIGLPIIKKAGVDHKINF-IESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLL  127 (194)
Q Consensus        51 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~-~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~L  127 (194)
                      .-+|..+|=++...+..++.++..+.  ...+ ...|..+.+..+.     ...||+|++|...+  +-.++++.+.+. 
T Consensus         3 kirVLiVDD~~~~r~~l~~~L~~~g~--~~~v~~a~~g~~al~~~~-----~~~pDlvllDi~MP~~dG~e~~~~ir~~-   74 (140)
T d1a2oa1           3 KIRVLSVDDSALMRQIMTEIINSHSD--MEMVATAPDPLVARDLIK-----KFNPDVLTLDVEMPRMDGLDFLEKLMRL-   74 (140)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHTSTT--EEEEEEESSHHHHHHHHH-----HHCCSEEEEECCCSSSCHHHHHHHHHHS-
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEEECCHHHHHHHHH-----hcCCCEEEEcCCCCCCCHHHHHHHHHHh-
Confidence            34799999999999999999987662  2233 3467766655543     25799999997633  445666766544 


Q ss_pred             cCCeEEEE
Q 029414          128 KVGGIAVY  135 (194)
Q Consensus       128 ~~gG~lv~  135 (194)
                      .|.-.+++
T Consensus        75 ~~~~~i~i   82 (140)
T d1a2oa1          75 RPMPVVMV   82 (140)
T ss_dssp             SCCCEEEE
T ss_pred             CCCCcEEE
Confidence            55555444

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.47  E-value=0.59  Score=31.64  Aligned_cols=38  Identities=18%  Similarity=0.202  Sum_probs=28.4

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHH
Q 029414           29 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGL   68 (194)
Q Consensus        29 ~vLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~   68 (194)
                      +|.-||.  |+.++.+|..+..+.+|+++|++++.++..+
T Consensus         2 kI~ViGl--G~vGl~~a~~~a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVAGS--GYVGLSLGVLLSLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEECC--SHHHHHHHHHHTTTSEEEEECSCHHHHHHHH
T ss_pred             EEEEECC--ChhHHHHHHHHHCCCcEEEEECCHHHHHHHh
Confidence            4666765  7777777666656789999999998877655

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=84.40  E-value=3.5  Score=26.22  Aligned_cols=37  Identities=19%  Similarity=0.030  Sum_probs=26.0

Q ss_pred             CCeEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchH
Q 029414           27 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETY   64 (194)
Q Consensus        27 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~iD~~~~~~   64 (194)
                      -++|.=|| |.|..+.+||+.+. .+..|...|.++...
T Consensus         9 ~~kI~iIG-g~G~mG~~la~~L~~~G~~V~~~d~~~~~~   46 (152)
T d2pv7a2           9 IHKIVIVG-GYGKLGGLFARYLRASGYPISILDREDWAV   46 (152)
T ss_dssp             CCCEEEET-TTSHHHHHHHHHHHTTTCCEEEECTTCGGG
T ss_pred             CCeEEEEc-CCCHHHHHHHHHHHHcCCCcEecccccccc
Confidence            35788899 45777777776663 256899999877544

>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]

Probab=84.25  E-value=3.5  Score=26.15  Aligned_cols=74  Identities=14%  Similarity=0.200  Sum_probs=48.9

Q ss_pred             CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcC--CCCCceeEEEEeCCcc--ccHHHHHHHHh
Q 029414           51 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS--ENEGSFDYAFVDADKD--NYCNYHERLMK  125 (194)
Q Consensus        51 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--~~~~~fD~i~id~~~~--~~~~~~~~~~~  125 (194)
                      ..+|..+|-++......++.++..+...++. ...|+.+.+..+..+.  .....||+|++|...+  +-.++++.+.+
T Consensus         3 pk~ILiVdD~~~~~~~l~~~L~~~g~~~~v~-~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~mP~~~G~el~~~ir~   80 (144)
T d1i3ca_           3 PKVILLVEDSKADSRLVQEVLKTSTIDHELI-ILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQ   80 (144)
T ss_dssp             CEEEEEECCCHHHHHHHHHHHHSCCSCEEEE-EECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCeEEE-EECCHHHHHHHHHhchhhhccCCCCEEEEECccccccchHHHHHHHh
Confidence            4589999999999999999998887642232 3456666665553210  1124699999997633  44556666654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.09  E-value=5.1  Score=27.95  Aligned_cols=75  Identities=20%  Similarity=0.181  Sum_probs=49.8

Q ss_pred             eEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHhhcCC
Q 029414           29 KTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYSE   99 (194)
Q Consensus        29 ~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~~   99 (194)
                      .+|-.|++.|.   .+..|++   .+.+|+.++.+++.++.+.+.+...+  .++..+.+|..+      .......   
T Consensus         3 ValITGas~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~---   74 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVK---DGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARK---   74 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH---
T ss_pred             EEEEcCCccHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH---
Confidence            34666766553   3344444   36799999999999998888888766  368888888643      2222222   


Q ss_pred             CCCceeEEEEeC
Q 029414          100 NEGSFDYAFVDA  111 (194)
Q Consensus       100 ~~~~fD~i~id~  111 (194)
                      ..++.|.++..+
T Consensus        75 ~~g~iDilVnnA   86 (255)
T d1gega_          75 TLGGFDVIVNNA   86 (255)
T ss_dssp             HTTCCCEEEECC
T ss_pred             HhCCccEEEecc
Confidence            147899888664

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.92  E-value=1.1  Score=26.36  Aligned_cols=72  Identities=8%  Similarity=-0.027  Sum_probs=39.1

Q ss_pred             ccccHHHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc
Q 029414           35 VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD  114 (194)
Q Consensus        35 ~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~  114 (194)
                      +|+|.+++.....- .+..|.+.|..+..   ..+.++..|.    ++..+...+.          -...|+|+.....+
T Consensus        10 gG~GMs~LA~~L~~-~G~~VsGSD~~~~~---~t~~L~~~Gi----~i~~gh~~~~----------i~~~d~vV~SsAI~   71 (89)
T d1j6ua1          10 GGIGMSAVALHEFS-NGNDVYGSNIEETE---RTAYLRKLGI----PIFVPHSADN----------WYDPDLVIKTPAVR   71 (89)
T ss_dssp             TSHHHHHHHHHHHH-TTCEEEEECSSCCH---HHHHHHHTTC----CEESSCCTTS----------CCCCSEEEECTTCC
T ss_pred             CHHHHHHHHHHHHh-CCCeEEEEeCCCCh---hHHHHHHCCC----eEEeeecccc----------cCCCCEEEEecCcC
Confidence            45676665432222 27899999987532   2334777764    3333322111          24589998887644


Q ss_pred             ccHHHHHHHH
Q 029414          115 NYCNYHERLM  124 (194)
Q Consensus       115 ~~~~~~~~~~  124 (194)
                      .....+..+.
T Consensus        72 ~~npel~~A~   81 (89)
T d1j6ua1          72 DDNPEIVRAR   81 (89)
T ss_dssp             TTCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            3333444443

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.24  E-value=2.5  Score=32.35  Aligned_cols=92  Identities=20%  Similarity=0.152  Sum_probs=52.0

Q ss_pred             CCeEEEEcccc-cHHHHH-HHhhCCCCCEEEEEeCCc-------------------chHHhHHHHHHHcCCCCcEEEEec
Q 029414           27 AKKTIEIGVFT-GYSLLL-TALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES   85 (194)
Q Consensus        27 ~~~vLeiG~G~-G~~~~~-la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~   85 (194)
                      ..+||-+|+|. |...+. |+.. + -++++.+|.+.                   ...+.+++++......-++..+..
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~-G-vg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  114 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALS-G-FRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  114 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTT-T-CCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred             cCeEEEECCCHHHHHHHHHHHHc-C-CCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence            36799999974 443333 3332 2 46899999754                   123456677766553345666666


Q ss_pred             chHHHHHHHhhcCCCCCceeEEEEeCCccccHHHH-HHHHhc
Q 029414           86 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH-ERLMKL  126 (194)
Q Consensus        86 d~~~~~~~~~~~~~~~~~fD~i~id~~~~~~~~~~-~~~~~~  126 (194)
                      +..+....+      -.+||+|+...+.......+ +.|..+
T Consensus       115 ~i~~~~~~~------~~~~DlVi~~~Dn~~aR~~in~~c~~l  150 (426)
T d1yovb1         115 KIQDFNDTF------YRQFHIIVCGLDSIIARRWINGMLISL  150 (426)
T ss_dssp             CGGGBCHHH------HTTCSEEEECCSCHHHHHHHHHHHHHT
T ss_pred             cccchHHHH------HHhcchheeccCcHHHHHHHHHHHHHh
Confidence            655433333      26799998765533333333 334433

>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Escherichia coli [TaxId: 562]

Probab=83.06  E-value=3.6  Score=25.43  Aligned_cols=67  Identities=12%  Similarity=0.233  Sum_probs=48.3

Q ss_pred             CCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHH
Q 029414           51 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLM  124 (194)
Q Consensus        51 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~  124 (194)
                      +-++..+|-++......++.++..|.. .+. ...++.+.+..+.     ..+||+|++|..-  .+-.++++.+.
T Consensus         4 ~lriLvVDD~~~~r~~i~~~L~~~g~~-~v~-~a~~g~~a~~~~~-----~~~~dlii~D~~mP~~dG~el~~~ir   72 (128)
T d1jbea_           4 ELKFLVVDDFSTMRRIVRNLLKELGFN-NVE-EAEDGVDALNKLQ-----AGGYGFVISDWNMPNMDGLELLKTIR   72 (128)
T ss_dssp             TCCEEEECSCHHHHHHHHHHHHHTTCC-CEE-EESSHHHHHHHHT-----TCCCCEEEEESCCSSSCHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCc-EEE-EecCchHHHHHHh-----cCCCCEEEEecccccCCHHHHHHHHH
Confidence            568999999999999999999988864 333 3356666655542     4689999999763  34455566554

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.02  E-value=5.7  Score=27.70  Aligned_cols=78  Identities=14%  Similarity=0.177  Sum_probs=50.1

Q ss_pred             CCCeEEEEccccc---HHHHHHHhhCCCCCEEEEE-eCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHh
Q 029414           26 NAKKTIEIGVFTG---YSLLLTALTIPEDGQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLL   95 (194)
Q Consensus        26 ~~~~vLeiG~G~G---~~~~~la~~~~~~~~v~~i-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~   95 (194)
                      .+|++|-.|.+.|   ..+..|++.   +.+|+.. ..+.+..+.+.+.+...+.  ++..+.+|..+      .+....
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~---G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~   79 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRR---GASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAV   79 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT---TCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHc---CCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHH
Confidence            5788898886655   344445543   5677764 5677778888888887763  67888888643      122222


Q ss_pred             hcCCCCCceeEEEEeC
Q 029414           96 KYSENEGSFDYAFVDA  111 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~  111 (194)
                      .+   .+..|.++...
T Consensus        80 ~~---~g~idilinna   92 (259)
T d1ja9a_          80 SH---FGGLDFVMSNS   92 (259)
T ss_dssp             HH---HSCEEEEECCC
T ss_pred             HH---cCCCcEEEecc
Confidence            11   46799887664

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.42  E-value=5.2  Score=26.82  Aligned_cols=37  Identities=8%  Similarity=-0.028  Sum_probs=23.4

Q ss_pred             eEEEEcccccH--HHHHHHhhCCCCCEEEEEeCCcchHHhHH
Q 029414           29 KTIEIGVFTGY--SLLLTALTIPEDGQITAIDVNRETYEIGL   68 (194)
Q Consensus        29 ~vLeiG~G~G~--~~~~la~~~~~~~~v~~iD~~~~~~~~a~   68 (194)
                      +|.-+|+|.=.  .++.||..   +.+|+++|.+++.++..+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~---g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSAR---GHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT---TCEEEEECSCHHHHHHHH
T ss_pred             EEEEECCCHhHHHHHHHHHhC---CCcEEEEeCCHHHHHHhc
Confidence            46677775422  33334442   579999999988766543

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.23  E-value=3.8  Score=25.09  Aligned_cols=66  Identities=14%  Similarity=0.091  Sum_probs=46.5

Q ss_pred             CEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHh
Q 029414           52 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK  125 (194)
Q Consensus        52 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~  125 (194)
                      .+|..+|-++...+..+..++..|.  .+. ...++.+.+..+.     ...||+|++|...+  +-..+++.+..
T Consensus         3 p~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~-----~~~~dlii~D~~mp~~~G~~~~~~~r~   70 (121)
T d1xhfa1           3 PHILIVEDELVTRNTLKSIFEAEGY--DVF-EATDGAEMHQILS-----EYDINLVIMDINLPGKNGLLLARELRE   70 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCC--EEE-EECChHHHHHHHH-----hcCCCEEEeecccCCccCcHHHHHHHh
Confidence            4899999999999999999998875  333 4456666665553     36899999997632  33445554433

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=82.21  E-value=3.9  Score=25.22  Aligned_cols=75  Identities=13%  Similarity=0.091  Sum_probs=51.4

Q ss_pred             EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCC--ccccHHHHHHHHhcccCC
Q 029414           53 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVG  130 (194)
Q Consensus        53 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~--~~~~~~~~~~~~~~L~~g  130 (194)
                      +|..+|-++...+..+..++..|.  .+. ...++.+.+..+     ....||+|++|..  ..+-...++.+.+.-..-
T Consensus         4 ~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~-----~~~~~dliilD~~mp~~~G~~~~~~i~~~~~~~   75 (128)
T d1yioa2           4 TVFVVDDDMSVREGLRNLLRSAGF--EVE-TFDCASTFLEHR-----RPEQHGCLVLDMRMPGMSGIELQEQLTAISDGI   75 (128)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHC-----CTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCC--Ccc-ccccHHHHHHHH-----HhcCCCEeehhhhcccchhHHHHHHHHhhCCCC
Confidence            899999999999999999998875  343 334666666654     2468999999976  334456666665443333


Q ss_pred             eEEEE
Q 029414          131 GIAVY  135 (194)
Q Consensus       131 G~lv~  135 (194)
                      -++++
T Consensus        76 ~ii~l   80 (128)
T d1yioa2          76 PIVFI   80 (128)
T ss_dssp             CEEEE
T ss_pred             eEEEE
Confidence            44444

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=81.82  E-value=6.4  Score=27.46  Aligned_cols=83  Identities=13%  Similarity=0.095  Sum_probs=49.4

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCC-cchHHhHHHHHHHcCCCCcEEEEecchHH--HHHHHhhcC-
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-   98 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~-   98 (194)
                      +++.+|-.|++.|.   .+..|++.   +.+|+.++.+ ++.++.+.+.+.... ..++.++..|..+  ....+..+. 
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~---Ga~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~   78 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQ---GADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAV   78 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHT---TCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            56888887877663   44445553   6799999986 456676666664432 1367888887543  122211110 


Q ss_pred             CCCCceeEEEEeCC
Q 029414           99 ENEGSFDYAFVDAD  112 (194)
Q Consensus        99 ~~~~~fD~i~id~~  112 (194)
                      ...++.|.++..+.
T Consensus        79 ~~~G~iDiLVnnAG   92 (260)
T d1x1ta1          79 RQMGRIDILVNNAG   92 (260)
T ss_dssp             HHHSCCSEEEECCC
T ss_pred             HHhCCCcEEEeecc
Confidence            11368998886643

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=81.62  E-value=4  Score=24.93  Aligned_cols=71  Identities=10%  Similarity=0.159  Sum_probs=46.7

Q ss_pred             EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhcccCC
Q 029414           53 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVG  130 (194)
Q Consensus        53 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~L~~g  130 (194)
                      +|..+|-++...+..+..++..|   .+. ...++.+.+..       ..+||+|++|...+  +-..+++.+.. ..|.
T Consensus         4 kILiVDDd~~~~~~l~~~L~~~g---~v~-~~~~~~~al~~-------~~~~dlillD~~mP~~~G~~~~~~lr~-~~~~   71 (120)
T d1p2fa2           4 KIAVVDDDKNILKKVSEKLQQLG---RVK-TFLTGEDFLND-------EEAFHVVVLDVMLPDYSGYEICRMIKE-TRPE   71 (120)
T ss_dssp             EEEEECSCHHHHHHHHHHHTTTE---EEE-EESSHHHHHHC-------CSCCSEEEEESBCSSSBHHHHHHHHHH-HCTT
T ss_pred             EEEEEECCHHHHHHHHHHHHhCC---EEE-EECCHHHHHhc-------CCCCCEEEEeCcccccchhHHHHHHhh-cCCC
Confidence            78899999999999999887655   333 33566665443       36799999997633  33555555543 3345


Q ss_pred             e-EEEE
Q 029414          131 G-IAVY  135 (194)
Q Consensus       131 G-~lv~  135 (194)
                      - ++++
T Consensus        72 ~~ii~i   77 (120)
T d1p2fa2          72 TWVILL   77 (120)
T ss_dssp             SEEEEE
T ss_pred             CcEEEE
Confidence            4 4444

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.52  E-value=6.5  Score=27.30  Aligned_cols=75  Identities=11%  Similarity=0.102  Sum_probs=48.7

Q ss_pred             CCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHhh
Q 029414           26 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK   96 (194)
Q Consensus        26 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~   96 (194)
                      +++++|-.|++.|.   .+..|++.   +.+|+.+|.+++.++...+.+     ..++.++.+|..+      .+.....
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~---G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~   76 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAE---GAKVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQPAQWKAAVDTAVT   76 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHT-----GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-----hCcceEEEeecCCHHHHHHHHHHHHH
Confidence            57889999987763   44445553   679999999987776655544     2367788887532      2222221


Q ss_pred             cCCCCCceeEEEEeC
Q 029414           97 YSENEGSFDYAFVDA  111 (194)
Q Consensus        97 ~~~~~~~fD~i~id~  111 (194)
                      +   .+..|+++..+
T Consensus        77 ~---~g~idilinnA   88 (244)
T d1nffa_          77 A---FGGLHVLVNNA   88 (244)
T ss_dssp             H---HSCCCEEEECC
T ss_pred             H---hCCCeEEEECC
Confidence            1   36799887664

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=81.36  E-value=4.1  Score=24.85  Aligned_cols=75  Identities=19%  Similarity=0.005  Sum_probs=49.9

Q ss_pred             EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhcccCC
Q 029414           53 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVG  130 (194)
Q Consensus        53 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~L~~g  130 (194)
                      +|..+|-++......+..++..|.  .+. ...++.+.+..+.     ...||+|++|...+  +-.++++.+.+.-+.=
T Consensus         2 rILvVDDd~~~~~~l~~~L~~~G~--~v~-~a~~g~eal~~l~-----~~~~dliilD~~mP~~~G~e~~~~i~~~~~~~   73 (119)
T d2pl1a1           2 RVLVVEDNALLRHHLKVQIQDAGH--QVD-DAEDAKEADYYLN-----EHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSL   73 (119)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSCCSSSCHHHHHHHHHHTTCCS
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hcccceeehhccCCCchhHHHHHHHHhcCccc
Confidence            688899999999999999998875  233 4456666555543     36799999997633  3455666665443222


Q ss_pred             eEEEE
Q 029414          131 GIAVY  135 (194)
Q Consensus       131 G~lv~  135 (194)
                      -+|++
T Consensus        74 pvi~l   78 (119)
T d2pl1a1          74 PILVL   78 (119)
T ss_dssp             CEEEE
T ss_pred             ceEee
Confidence            34444

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

Probab=81.06  E-value=4.6  Score=25.25  Aligned_cols=75  Identities=17%  Similarity=0.050  Sum_probs=49.2

Q ss_pred             CEEEEEeCCcchHHhHHHHHHHcCCCCcEEE--EecchHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhcc
Q 029414           52 GQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLL  127 (194)
Q Consensus        52 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~--~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L  127 (194)
                      .+|..+|-++...+..++.++..+   .+..  ...+..+.+..+.     ...||+|++|...  .+-.+.++.+.+. 
T Consensus         3 i~VLiVDD~~~~r~~l~~~L~~~~---~~~~v~~a~~~~~al~~~~-----~~~~DlvllD~~mP~~~G~el~~~ir~~-   73 (138)
T d1a04a2           3 ATILLIDDHPMLRTGVKQLISMAP---DITVVGEASNGEQGIELAE-----SLDPDLILLDLNMPGMNGLETLDKLREK-   73 (138)
T ss_dssp             EEEEEECSCHHHHHHHHHHHTTCT---TEEEEEEESSHHHHHHHHH-----HHCCSEEEEETTSTTSCHHHHHHHHHHS-
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHH-----hcCCCEEEEecCCCCCCHHHHHHHHHhh-
Confidence            478899999988888888876544   3332  3456666655542     2579999999763  3456677777543 


Q ss_pred             cCCeEEEE
Q 029414          128 KVGGIAVY  135 (194)
Q Consensus       128 ~~gG~lv~  135 (194)
                      .|...+++
T Consensus        74 ~~~~~viv   81 (138)
T d1a04a2          74 SLSGRIVV   81 (138)
T ss_dssp             CCCSEEEE
T ss_pred             CCCCCEEE
Confidence            45544443

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=80.95  E-value=4.2  Score=24.69  Aligned_cols=75  Identities=15%  Similarity=0.085  Sum_probs=50.7

Q ss_pred             EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCcc--ccHHHHHHHHhcccCC
Q 029414           53 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVG  130 (194)
Q Consensus        53 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~~--~~~~~~~~~~~~L~~g  130 (194)
                      +|..+|-++...+..+..++..|+  .+. ...+..+.+..+.     ..+||+|++|...+  +-...++.+.+ .+.-
T Consensus         2 rILiVdDd~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~~~-----~~~~dlillD~~mp~~~G~~~~~~i~~-~~~~   72 (117)
T d2a9pa1           2 KILIVDDEKPISDIIKFNMTKEGY--EVV-TAFNGREALEQFE-----AEQPDIIILDLMLPEIDGLEVAKTIRK-TSSV   72 (117)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEECSSCSSSCHHHHHHHHHT-TCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hcCCCEEEeccccCCCCccHHHHHHHh-CCCC
Confidence            688999999999999999998875  344 4467766666553     25799999997633  33455665543 3333


Q ss_pred             eEEEEe
Q 029414          131 GIAVYD  136 (194)
Q Consensus       131 G~lv~~  136 (194)
                      -+|++.
T Consensus        73 pvI~lt   78 (117)
T d2a9pa1          73 PILMLS   78 (117)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            455553

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=80.81  E-value=6.9  Score=27.18  Aligned_cols=73  Identities=15%  Similarity=0.104  Sum_probs=43.9

Q ss_pred             cCCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHH------HHHHHh
Q 029414           25 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLL   95 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~   95 (194)
                      .+++++|-.|++.|.   .+..|++.   +.+|+..|.+++..+.+++    .    +..++..|..+      ...+..
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~---G~~V~~~~~~~~~~~~~~~----~----~~~~~~~Dv~~~~~v~~~~~~~~   71 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFARE---GALVALCDLRPEGKEVAEA----I----GGAFFQVDLEDERERVRFVEEAA   71 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESSTTHHHHHHH----H----TCEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHH----c----CCeEEEEeCCCHHHHHHHHHHHH
Confidence            367889999976663   34445543   6899999999876654432    1    23455666432      222222


Q ss_pred             hcCCCCCceeEEEEeC
Q 029414           96 KYSENEGSFDYAFVDA  111 (194)
Q Consensus        96 ~~~~~~~~fD~i~id~  111 (194)
                      .+   .++.|.++..+
T Consensus        72 ~~---~G~iDiLVnnA   84 (248)
T d2d1ya1          72 YA---LGRVDVLVNNA   84 (248)
T ss_dssp             HH---HSCCCEEEECC
T ss_pred             Hh---cCCCCeEEEeC
Confidence            11   37899887654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.52  E-value=8  Score=27.68  Aligned_cols=85  Identities=11%  Similarity=0.112  Sum_probs=53.2

Q ss_pred             cCCCeEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcC---CCCcEEEEecchHH--HHHHHhh
Q 029414           25 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---VDHKINFIESEALS--VLDQLLK   96 (194)
Q Consensus        25 ~~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~--~~~~~~~   96 (194)
                      .+++.+|-.|++.|.   .+..|++.   +.+|+.++.+++.++.+.+.+....   ...++..+.+|..+  ....+..
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~---Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~   86 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLEL---GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK   86 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHH
Confidence            367889999987763   33344543   6799999999998888777776432   12468888887532  1222111


Q ss_pred             cC-CCCCceeEEEEeCC
Q 029414           97 YS-ENEGSFDYAFVDAD  112 (194)
Q Consensus        97 ~~-~~~~~fD~i~id~~  112 (194)
                      +. ...+..|+++..+.
T Consensus        87 ~~~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          87 STLDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHHHHSCCCEEEECCC
T ss_pred             HHHHHhCCeEEEEeecc
Confidence            10 11367998886643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=80.23  E-value=4  Score=24.08  Aligned_cols=79  Identities=14%  Similarity=0.054  Sum_probs=44.6

Q ss_pred             cCCCeEEEEcc-cccHHHH--HHHhhCCCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCC
Q 029414           25 VNAKKTIEIGV-FTGYSLL--LTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE  101 (194)
Q Consensus        25 ~~~~~vLeiG~-G~G~~~~--~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  101 (194)
                      .+.++|.=||. |+|.+++  .+...   +..|.+.|......   .+.+...|    +.+..+...+.+          
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~---G~~VsGSD~~~~~~---~~~L~~~G----i~v~~g~~~~~i----------   65 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNE---GYQISGSDIADGVV---TQRLAQAG----AKIYIGHAEEHI----------   65 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHH---TCEEEEEESCCSHH---HHHHHHTT----CEEEESCCGGGG----------
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhC---CCEEEEEeCCCChh---hhHHHHCC----CeEEECCccccC----------
Confidence            34567888874 5676663  34443   67999999864221   23344444    455555554321          


Q ss_pred             CceeEEEEeCCccccHHHHHHH
Q 029414          102 GSFDYAFVDADKDNYCNYHERL  123 (194)
Q Consensus       102 ~~fD~i~id~~~~~~~~~~~~~  123 (194)
                      ...|+|+.....+.....+..+
T Consensus        66 ~~~d~vV~S~AI~~~npel~~A   87 (96)
T d1p3da1          66 EGASVVVVSSAIKDDNPELVTS   87 (96)
T ss_dssp             TTCSEEEECTTSCTTCHHHHHH
T ss_pred             CCCCEEEECCCcCCCCHHHHHH
Confidence            4579998876643333334444

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.19  E-value=4.1  Score=26.25  Aligned_cols=86  Identities=13%  Similarity=0.011  Sum_probs=47.0

Q ss_pred             EEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 029414           30 TIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  108 (194)
Q Consensus        30 vLeiG~G~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~  108 (194)
                      |-=||+|  ..+..+|..+ ..+..|++.|.+++..+..++.    +    .. ...+..+..          ...|+|+
T Consensus         3 IgiIGlG--~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~----~----~~-~~~~~~e~~----------~~~d~ii   61 (161)
T d1vpda2           3 VGFIGLG--IMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA----G----AE-TASTAKAIA----------EQCDVII   61 (161)
T ss_dssp             EEEECCS--TTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----T----CE-ECSSHHHHH----------HHCSEEE
T ss_pred             EEEEehh--HHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHh----h----hh-hcccHHHHH----------hCCCeEE
Confidence            4556664  3333443333 1256899999998777665542    2    22 223333433          2468888


Q ss_pred             EeCC-ccccHHHH---HHHHhcccCCeEEEEe
Q 029414          109 VDAD-KDNYCNYH---ERLMKLLKVGGIAVYD  136 (194)
Q Consensus       109 id~~-~~~~~~~~---~~~~~~L~~gG~lv~~  136 (194)
                      +.-. .......+   +.+...+++|.+++-.
T Consensus        62 ~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~   93 (161)
T d1vpda2          62 TMLPNSPHVKEVALGENGIIEGAKPGTVLIDM   93 (161)
T ss_dssp             ECCSSHHHHHHHHHSTTCHHHHCCTTCEEEEC
T ss_pred             EEcCCHHHHHHHHhCCcchhhccCCCCEEEEC
Confidence            8654 33333333   3456777887666553

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=80.01  E-value=5.1  Score=25.16  Aligned_cols=75  Identities=13%  Similarity=0.123  Sum_probs=52.5

Q ss_pred             EEEEEeCCcchHHhHHHHHHHcCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEeCCc--cccHHHHHHHHhcccCC
Q 029414           53 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVG  130 (194)
Q Consensus        53 ~v~~iD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~fD~i~id~~~--~~~~~~~~~~~~~L~~g  130 (194)
                      +|..+|-++......+..++..|.  .+.. ..++.+.+..+     ....||+|++|...  .+-..+++.+.+. .|+
T Consensus         2 ~ILiVDDd~~~~~~l~~~L~~~g~--~v~~-~~~~~~al~~l-----~~~~~dlil~D~~mP~~~G~el~~~lr~~-~~~   72 (140)
T d1qkka_           2 SVFLIDDDRDLRKAMQQTLELAGF--TVSS-FASATEALAGL-----SADFAGIVISDIRMPGMDGLALFRKILAL-DPD   72 (140)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEEE-ESCHHHHHHTC-----CTTCCSEEEEESCCSSSCHHHHHHHHHHH-CTT
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEEE-eCChHHHHHHH-----hccCcchHHHhhccCCCCHHHHHHHHHHh-CCC
Confidence            688999999999999999998875  3443 36777766665     24689999999763  3445667776553 455


Q ss_pred             -eEEEEe
Q 029414          131 -GIAVYD  136 (194)
Q Consensus       131 -G~lv~~  136 (194)
                       -+|++.
T Consensus        73 ~pvI~lT   79 (140)
T d1qkka_          73 LPMILVT   79 (140)
T ss_dssp             SCEEEEE
T ss_pred             CcEEEEE
Confidence             355553