Citrus Sinensis ID: 029427

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MAFERDLNLEATELRLGLPGTQESRSNKRSLPDMNIVDDQDHRSGSSRVIANASNATKSEEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRVMKGSEARGLGCAV
Secondary Structure (PSIPRED)
ccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccEEEEEEccccEEEEEcccccccHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccEEEcccccHHHHHHHccEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHcccccccccEEEEEEccccccHHHEcHHHHccHHHHHHHHHHHHccccccccHHHcccccccEEEEEcccccEEEEccccHHHHHHHHHHHEEEcccccccccccc
Coil and Loop (DISEMBL)
MAFERDLNLEAtelrlglpgtqesrsnkrslpdmnivddqdhrsgssrvianasnatkseeettppsktqvvgwppirsyrKNSLQAKKSEAEASGIYVKVsmdgapylrKIHLNIYKDYPELLKALEDMFKFKVgeysesegyngsefvptyedkdgdwmlvgdvpweMFITSCKRLRVMkgsearglgcav
Flexible Loop (DISEMBL)
maferdlnleatelrlglpgtqesrsnkrslpdmnivddqdhrsgssRVIANAsnatkseeettppsktqvvgwppirSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEysesegyngsefvptyedkdgDWMLVGDVPWEMFITSCKRLRvmkgsearglgcav
Low Complexity Region (SEG)
MAFERDLNLEATELRLGLPGTQESRSNKRSLPDMNIVDDQDHRSGSSRVIANASNATKSEEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVgeysesegyngseFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRVMKGSEARGLGCAV
Disordered region (IsUnstruct)
***********************************************************************************************GIYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRVM************
Disordered Region (DISOPRED)
*AFERDLNLEATELRLG*********************************************************************************VKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRVMKGSEARGLGCA*
Disordered Region (DISEMBL)
MAFERDLNLEATELRLGLPGTQESRSNKRSLPDMNIVDDQDHRSGSSRVIANA******************VGWPPIRSYRK**********EASGIYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRVMKG**********
Disordered Region (DISPRO)
****RDLNLEATELRLGLPG**********************************************SKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRVMKGS******C**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFERDLNLEATELRLGLPGTQESRSNKRSLPDMNIVDDQDHRSGSSRVIANASNATKSEEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRVMKGSEARGLGCAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
O24542	193	Auxin-induced protein 22D	N/A	no	0.927	0.927	0.659	1e-68
P33077	186	Auxin-responsive protein	yes	no	0.906	0.940	0.620	3e-66
P32294	196	Auxin-induced protein 22B	N/A	no	0.932	0.918	0.619	7e-66
Q38822	189	Auxin-responsive protein	no	no	0.948	0.968	0.634	2e-64
O24543	203	Auxin-induced protein 22E	N/A	no	0.968	0.921	0.591	1e-62
P49679	189	Auxin-induced protein IAA	N/A	no	0.943	0.962	0.592	3e-60
P49678	174	Auxin-responsive protein	no	no	0.870	0.965	0.581	2e-54
P49677	168	Auxin-responsive protein	no	no	0.849	0.976	0.586	4e-51
P0C133	197	Auxin-responsive protein	yes	no	0.886	0.868	0.512	2e-45
O24407	236	Auxin-responsive protein	no	no	0.937	0.766	0.444	8e-43

>sp|O24542|AX22D_VIGRR Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1

 Score =  258 bits (660), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 155/197 (78%), Gaps = 18/197 (9%)

Query: 2   AFERDLNLEATELRLGLPGTQE------SRSNKRSLPDMNIVDDQDHRSGSSRVIANASN 55
           ++E++LNL+ATELRLGLPG+ E      +RSNKRS P+ +     D  S     I+N S+
Sbjct: 7   SYEKELNLKATELRLGLPGSDEPEKRATARSNKRSSPEAS-----DEES-----ISNGSD 56

Query: 56  ATKSEEETTPPSKTQVVGWPPIRSYRKNSLQAKKSE-AEASGIYVKVSMDGAPYLRKIHL 114
            TK E+   PP+K QVVGWPPIRSYRKN++Q KK E +E +G+YVKVSM GAPYLRKI L
Sbjct: 57  VTK-EDNVVPPAKAQVVGWPPIRSYRKNNVQQKKEEESEGNGMYVKVSMAGAPYLRKIDL 115

Query: 115 NIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITS 174
            +YK YPELLKALE+MFK   GEYSE EGYNGSE+ PTYEDKDGDWMLVGDVPW MF++S
Sbjct: 116 KVYKSYPELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSS 175

Query: 175 CKRLRVMKGSEARGLGC 191
           CKRLR+MKGSEA+GLGC
Sbjct: 176 CKRLRIMKGSEAKGLGC 192

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Vigna radiata var. radiata (taxid: 3916)

>sp|P33077|IAA4_ARATH Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=1 SV=2

 Score =  251 bits (640), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/195 (62%), Positives = 147/195 (75%), Gaps = 20/195 (10%)

Query: 2   AFERDLNLEATELRLGLPGTQES----RSNKRSLPDMNIVDDQDHRSGSSRVIANASNAT 57
            ++  +NL+ATELRLGLPGT+E+    +SNKR LP+    + +   +G +          
Sbjct: 6   VYDELVNLKATELRLGLPGTEETVSCGKSNKRVLPEAT--EKEIESTGKT---------- 53

Query: 58  KSEEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNIY 117
               ET  P K Q+VGWPP+RSYRKN++Q KKSE+E  G YVKVSMDGAPYLRKI L +Y
Sbjct: 54  ----ETASPPKAQIVGWPPVRSYRKNNVQTKKSESEGQGNYVKVSMDGAPYLRKIDLTMY 109

Query: 118 KDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKR 177
           K YPEL+K+LE+MFKF VGEY E EGY GS+FVPTYEDKDGDWMLVGDVPWEMF++SCKR
Sbjct: 110 KQYPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKR 169

Query: 178 LRVMKGSEARGLGCA 192
           LR+MKGSE +GLGC 
Sbjct: 170 LRIMKGSEVKGLGCG 184

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P32294|AX22B_VIGRR Auxin-induced protein 22B OS=Vigna radiata var. radiata GN=AUX22B PE=2 SV=1

 Score =  249 bits (636), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 127/205 (61%), Positives = 149/205 (72%), Gaps = 25/205 (12%)

Query: 1   MAFERDLNLEATELRLGLPGTQES-----------RSNKRSLPDMNIVDDQDHRSGSSRV 49
           + FE DLNL+ATELRLGLPGT+E            R+NKR + + +    QD  S     
Sbjct: 5   VVFESDLNLKATELRLGLPGTEEKEDNNLRTHAVLRNNKRQVRETS----QDSVS----- 55

Query: 50  IANASNATKSEEETT-PPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPY 108
           I+ AS+  +  E  + PP K ++VGWPPIRSYRKNS+Q    E E  GI+VKVSMDGAPY
Sbjct: 56  ISKASHHQQHVETVSAPPPKAKIVGWPPIRSYRKNSVQ----EGEGDGIFVKVSMDGAPY 111

Query: 109 LRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPW 168
           LRK+ L +Y  YPELLKALE MFK  +GEYSE EGY GSE+ PTYEDKDGDWMLVGDVPW
Sbjct: 112 LRKVDLKVYGGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPW 171

Query: 169 EMFITSCKRLRVMKGSEARGLGCAV 193
           +MF+TSCKRLR+MKGSEARGLGC V
Sbjct: 172 DMFVTSCKRLRIMKGSEARGLGCVV 196

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Vigna radiata var. radiata (taxid: 3916)

>sp|Q38822|IAA3_ARATH Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1

 Score =  244 bits (623), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/189 (63%), Positives = 143/189 (75%), Gaps = 6/189 (3%)

Query: 7   LNLEATELRLGLPGTQESRSNKRSLPDMNIVDDQDHRSGSSRVIANASNATKSEEETTPP 66
           +NL+ TELRLGLPGT      K  +   N  + +   + + + I ++S  T    ET+PP
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKT----ETSPP 60

Query: 67  SKTQVVGWPPIRSYRKNSLQAKK--SEAEASGIYVKVSMDGAPYLRKIHLNIYKDYPELL 124
            K Q+VGWPP+RSYRKN++Q+KK  SE E  GIYVKVSMDGAPYLRKI L+ YK Y ELL
Sbjct: 61  RKAQIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELL 120

Query: 125 KALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRVMKGS 184
           KALE MFKF VGEY E +GY GS+FVPTYEDKDGDWML+GDVPWEMFI +CKRLR+MKGS
Sbjct: 121 KALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGS 180

Query: 185 EARGLGCAV 193
           EA+GLGC V
Sbjct: 181 EAKGLGCGV 189

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|O24543|AX22E_VIGRR Auxin-induced protein 22E OS=Vigna radiata var. radiata GN=AUX22E PE=2 SV=1

 Score =  238 bits (608), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/203 (59%), Positives = 153/203 (75%), Gaps = 16/203 (7%)

Query: 2   AFERDLNLEATELRLGLPGT---QESR---------SNKRSLPDMNIVDDQDHRSGSSRV 49
           ++E +LNL ATELRLGLPG+   QE R         SNKRS P++   ++   +S  +  
Sbjct: 3   SYETELNLRATELRLGLPGSDEPQEKRPCSGSVVRSSNKRSSPEL---EESRCKSNINSD 59

Query: 50  IANASNATKSEEETTPPSKTQVVGWPPIRSYRKNSLQAKKSE-AEASGIYVKVSMDGAPY 108
            ++++  +   E++  P+K QVVGWPPIRS+RKNSLQ KK E  + +G+Y+KVSM GAPY
Sbjct: 60  SSDSTTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDGTGMYLKVSMAGAPY 119

Query: 109 LRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPW 168
           LRKI L +YK YPELLKAL+++FK   GEYSE EGYNGSE+ PTYEDKDGDWMLVGDVPW
Sbjct: 120 LRKIDLKVYKSYPELLKALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPW 179

Query: 169 EMFITSCKRLRVMKGSEARGLGC 191
            MF++SCKRLR++KGSEA+GLGC
Sbjct: 180 NMFVSSCKRLRIIKGSEAKGLGC 202

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Vigna radiata var. radiata (taxid: 3916)

>sp|P49679|IAA4_PEA Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1

 Score =  231 bits (588), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 115/194 (59%), Positives = 140/194 (72%), Gaps = 12/194 (6%)

Query: 7   LNLEATELRLGLPGTQESRSNKRSLPDMNIVDDQDHR-----SGSSRVIANASNATKSEE 61
           +  +ATELRLGLPG  E    K+ +   ++V + + R     S  S  I+  +N     E
Sbjct: 1   MEFKATELRLGLPGITEEE-EKKIIHGSSVVKNNNKRQLPQTSEESVSISKVTNDEHIVE 59

Query: 62  ETT--PPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNIYKD 119
            ++  PP+K ++VGWPPIRSYRKNSL     EA+  GI+VKVSMDGAPYLRKI L +Y  
Sbjct: 60  SSSAAPPAKAKIVGWPPIRSYRKNSLH----EADVGGIFVKVSMDGAPYLRKIDLRVYGG 115

Query: 120 YPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKRLR 179
           Y ELLKALE MFK  +GEYSE EGY GSE+ PTYEDKDGDWMLVGDVPW+MF+TSCKRLR
Sbjct: 116 YSELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLR 175

Query: 180 VMKGSEARGLGCAV 193
           +MKG+EA+GLGC V
Sbjct: 176 IMKGTEAKGLGCGV 189

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Pisum sativum (taxid: 3888)

>sp|P49678|IAA2_ARATH Auxin-responsive protein IAA2 OS=Arabidopsis thaliana GN=IAA2 PE=1 SV=3

 Score =  211 bits (538), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/191 (58%), Positives = 135/191 (70%), Gaps = 23/191 (12%)

Query: 1   MAFER--DLNLEATELRLGLPGTQESRSNKRSLPDMNIVDDQDHRSGSSRVIANASNATK 58
           MA+E+  +LNL+ TEL LGLPG  E    ++ +  +        +S + R+       T+
Sbjct: 1   MAYEKVNELNLKDTELCLGLPGRTEKIKEEQEVSCV--------KSNNKRLFEE----TR 48

Query: 59  SEEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNIYK 118
            EEE+TPP+KTQ+VGWPP+RS RKN+          S  YVKVSMDGAPYLRKI L  YK
Sbjct: 49  DEEESTPPTKTQIVGWPPVRSSRKNN---------NSVSYVKVSMDGAPYLRKIDLKTYK 99

Query: 119 DYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKRL 178
           +YPELLKALE+MFK  +GEY E EGY GS FVPTYEDKDGDWMLVGDVPW+MF +SCKRL
Sbjct: 100 NYPELLKALENMFKVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRL 159

Query: 179 RVMKGSEARGL 189
           R+MKGS+A  L
Sbjct: 160 RIMKGSDAPAL 170

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P49677|IAA1_ARATH Auxin-responsive protein IAA1 OS=Arabidopsis thaliana GN=IAA1 PE=1 SV=2

 Score =  201 bits (510), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 109/186 (58%), Positives = 128/186 (68%), Gaps = 22/186 (11%)

Query: 1   MAFERDLNLEATELRLGLPGTQESRSNKRSLPDMNIVDDQDHRSGSSRVIANASNATKSE 60
           M     LNL+ TELRLGLPG QE +  + S            RS + R      N   +E
Sbjct: 1   MEVTNGLNLKDTELRLGLPGAQEEQQLELSC----------VRSNNKR-----KNNDSTE 45

Query: 61  EETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNIYKDY 120
           E   PP+KTQ+VGWPP+RS        +K+    +  YVKVSMDGAPYLRKI L +YK+Y
Sbjct: 46  ESAPPPAKTQIVGWPPVRS-------NRKNNNNKNVSYVKVSMDGAPYLRKIDLKMYKNY 98

Query: 121 PELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRV 180
           PELLKALE+MFKF VGEYSE EGY GS FVPTYEDKDGDWMLVGDVPW+MF +SC++LR+
Sbjct: 99  PELLKALENMFKFTVGEYSEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRI 158

Query: 181 MKGSEA 186
           MKGSEA
Sbjct: 159 MKGSEA 164

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C133|IAA31_ORYSJ Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica GN=IAA31 PE=2 SV=1

 Score =  181 bits (460), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 104/203 (51%), Positives = 125/203 (61%), Gaps = 32/203 (15%)

Query: 8   NLEATELRLGLPGTQESRSNKRSLPDMNIVDDQDHRSGSSRVIANASNATKSEEETTPPS 67
           NL+ATELRLGLPGT+E  +   S P          R+GS R +A   +  K +      +
Sbjct: 3   NLKATELRLGLPGTEEEAAPPPSTP----------RAGSKRALAGEPDQAKIKPAAA--A 50

Query: 68  KTQVVGWPPIRSYRKNSLQA--------------------KKSEAEASGIYVKVSMDGAP 107
           K QVVGWPP+RSYRK+ LQ                     K+  A A G++VKVSMDGAP
Sbjct: 51  KAQVVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSMDGAP 110

Query: 108 YLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVP 167
           YLRKI L +YK Y EL +ALE MF    G  +     N S+F  TYEDKDGD MLVGDVP
Sbjct: 111 YLRKIDLKVYKGYRELREALEAMFLCFSGGAAADAAVNPSDFAVTYEDKDGDLMLVGDVP 170

Query: 168 WEMFITSCKRLRVMKGSEARGLG 190
           +EMFI++CKRLR+MKGSEARGLG
Sbjct: 171 FEMFISTCKRLRIMKGSEARGLG 193

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  173 bits (438), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 100/225 (44%), Positives = 125/225 (55%), Gaps = 44/225 (19%)

Query: 7   LNLEATELRLGLPGTQES------RSNKRSLPDMNIVDDQDHRSGSSR-VIANASNATKS 59
           +N EATELRLGLPG           + KR   +   VD + + S ++   ++        
Sbjct: 2   INFEATELRLGLPGGNHGGEMAGKNNGKRGFSE--TVDLKLNLSSTAMDSVSKVDLENMK 59

Query: 60  EEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAE----------------------ASGI 97
           E+   PP+K QVVGWPP+RS+RKN +  +K                          A+  
Sbjct: 60  EKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVA 119

Query: 98  YVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFK-FKVGEYSES------------EGY 144
           YVKVSMDGAPYLRKI L +YK Y +L  AL  MF  F +G Y               +  
Sbjct: 120 YVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLL 179

Query: 145 NGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRVMKGSEARGL 189
           NGS++VPTYEDKDGDWMLVGDVPWEMF+ SCKR+R+MKGSEA GL
Sbjct: 180 NGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGL 224

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
224130638	201	predicted protein [Populus trichocarpa]	0.974	0.935	0.737	6e-79
224125652	203	predicted protein [Populus trichocarpa]	0.984	0.935	0.728	7e-77
20269063	204	aux/IAA protein [Populus tremula x Popul	0.984	0.931	0.719	3e-76
429326544	204	hypothetical protein [Populus tomentosa]	0.984	0.931	0.710	3e-76
255580941	200	Auxin-induced protein 22D, putative [Ric	0.968	0.935	0.718	8e-76
62125392	201	auxin-responsive protein IAA [Populus to	0.974	0.935	0.713	1e-75
449442931	197	PREDICTED: auxin-induced protein 22D-lik	0.958	0.939	0.658	6e-72
34550779	190	Gbiaa-Re [Gossypium barbadense]	0.948	0.963	0.658	5e-69
225451360	199	PREDICTED: auxin-induced protein 22D [Vi	0.943	0.914	0.666	2e-68
224085579	195	predicted protein [Populus trichocarpa]	0.958	0.948	0.651	4e-68

>gi|224130638|ref|XP_002328339.1| predicted protein [Populus trichocarpa] gi|222838054|gb|EEE76419.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 152/206 (73%), Positives = 167/206 (81%), Gaps = 18/206 (8%)

Query: 1   MAFERDLNLEATELRLGLPGTQE------------SRSNKRSLPDMNIVDDQDHRSGSSR 48
           M FERDLNLEATELRLGLPGT              ++SNKRSLPDMN  +D   R  SS 
Sbjct: 1   MEFERDLNLEATELRLGLPGTATEQLEKQTPNSNVTKSNKRSLPDMN--EDSAGRRESSS 58

Query: 49  VIANASNATKS-EEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAP 107
           V   +SN  KS E+ET PP+KTQVVGWPPIRSYRKN LQA+K EAEA+G+YVKVSMDGAP
Sbjct: 59  V---SSNDKKSHEQETAPPTKTQVVGWPPIRSYRKNCLQARKLEAEAAGLYVKVSMDGAP 115

Query: 108 YLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVP 167
           YLRKI L +YK YPELL+ +E+MFKFKVGEYSE EGYNGSE+VPTYEDKDGDWMLVGDVP
Sbjct: 116 YLRKIDLKVYKGYPELLEVVEEMFKFKVGEYSEREGYNGSEYVPTYEDKDGDWMLVGDVP 175

Query: 168 WEMFITSCKRLRVMKGSEARGLGCAV 193
           WEMFI SCKRLR+MK SEARGLGCAV
Sbjct: 176 WEMFINSCKRLRIMKESEARGLGCAV 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125652|ref|XP_002319642.1| predicted protein [Populus trichocarpa] gi|222858018|gb|EEE95565.1| predicted protein [Populus trichocarpa] gi|429326546|gb|AFZ78613.1| hypothetical protein [Populus tomentosa]

 Score =  291 bits (746), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 150/206 (72%), Positives = 162/206 (78%), Gaps = 16/206 (7%)

Query: 1   MAFERDLNLEATELRLGLPGTQE------------SRSNKRSLPDMNIVDDQDHRSGSSR 48
           M FERDLNL+ATELRLGLPGT              ++SNKRSLPDMN       R  SS 
Sbjct: 1   MEFERDLNLDATELRLGLPGTATKQSEKQTPNSNLAKSNKRSLPDMNEEPAGSSRENSST 60

Query: 49  VIANASNATKS-EEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAP 107
           V   +SN  KS ++ET PP K QVVGWPPIRSYRKN LQAKK EAEA+G+YVKVSMDGAP
Sbjct: 61  V---SSNDKKSHDQETAPPIKAQVVGWPPIRSYRKNCLQAKKLEAEAAGLYVKVSMDGAP 117

Query: 108 YLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVP 167
           YLRKI L +YK YPELLKALE+MFK KVGEYSE EGYNGSE VPTYEDKDGDWMLVGDVP
Sbjct: 118 YLRKIDLKVYKGYPELLKALEEMFKSKVGEYSEREGYNGSEHVPTYEDKDGDWMLVGDVP 177

Query: 168 WEMFITSCKRLRVMKGSEARGLGCAV 193
           W+MFI SCKRLR+MK SEARGLGCAV
Sbjct: 178 WDMFINSCKRLRIMKESEARGLGCAV 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20269063|emb|CAC84712.1| aux/IAA protein [Populus tremula x Populus tremuloides]

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 149/207 (71%), Positives = 161/207 (77%), Gaps = 17/207 (8%)

Query: 1   MAFERDLNLEATELRLGLPGTQE------------SRSNKRSLPDMNIVDDQDHRSGSSR 48
           M FERDLNL+ATELRLGLPGT              ++SNKRSLPDMN       R  SS 
Sbjct: 1   MEFERDLNLDATELRLGLPGTATRQSEKQTPNSNLAKSNKRSLPDMNEDPAGSSRENSST 60

Query: 49  VIANASNATKSEEETT--PPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGA 106
           V   +SN  KS ++ T  PP K QVVGWPPIRSYRKN LQAKK EAEA+G+YVKVSMDGA
Sbjct: 61  V---SSNEEKSHDQETAPPPIKAQVVGWPPIRSYRKNCLQAKKQEAEAAGLYVKVSMDGA 117

Query: 107 PYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDV 166
           PYLRKI L +YK YPELLKALE+MFK KVGEYSE EGYNGSE VPTYEDKDGDWMLVGDV
Sbjct: 118 PYLRKIDLKVYKGYPELLKALEEMFKSKVGEYSEREGYNGSEHVPTYEDKDGDWMLVGDV 177

Query: 167 PWEMFITSCKRLRVMKGSEARGLGCAV 193
           PW+MFI SCKRLR+MK SEARGLGCAV
Sbjct: 178 PWDMFINSCKRLRIMKESEARGLGCAV 204

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326544|gb|AFZ78612.1| hypothetical protein [Populus tomentosa]

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 147/207 (71%), Positives = 162/207 (78%), Gaps = 17/207 (8%)

Query: 1   MAFERDLNLEATELRLGLPGTQE------------SRSNKRSLPDMNIVDDQDHRSGSSR 48
           M FERDLNL+ATELRLGLPGT              ++SNKRSLPDMN       R  SS 
Sbjct: 1   MEFERDLNLDATELRLGLPGTATKQSEKQTPNSNLAKSNKRSLPDMNEEPAGSSRENSST 60

Query: 49  VIANASNATKSEEETT--PPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGA 106
           V   +SN  KS ++ T  PP K QVVGWPPIRSYRKN LQA+K EAEA+G+YVKVSMDGA
Sbjct: 61  V---SSNEEKSHDQETAPPPIKAQVVGWPPIRSYRKNCLQARKLEAEAAGLYVKVSMDGA 117

Query: 107 PYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDV 166
           PYLRKI L +YK YPELL+ +E+MFKFKVGEYSE EGYNGSE+VPTYEDKDGDWMLVGDV
Sbjct: 118 PYLRKIDLKVYKGYPELLEVVEEMFKFKVGEYSEREGYNGSEYVPTYEDKDGDWMLVGDV 177

Query: 167 PWEMFITSCKRLRVMKGSEARGLGCAV 193
           PWEMFI SCKRLR+MK SEARGLGCAV
Sbjct: 178 PWEMFINSCKRLRIMKESEARGLGCAV 204

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580941|ref|XP_002531289.1| Auxin-induced protein 22D, putative [Ricinus communis] gi|223529122|gb|EEF31102.1| Auxin-induced protein 22D, putative [Ricinus communis]

 Score =  288 bits (737), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 148/206 (71%), Positives = 164/206 (79%), Gaps = 19/206 (9%)

Query: 1   MAFERD--LNLEATELRLGLPGTQES--------RSNKRSLPDMNIVDDQDHRSGSSRVI 50
           MAFERD  LNLEATELRL LPGT  +        + NKRS PDMN     D RS  SR  
Sbjct: 1   MAFERDGDLNLEATELRLALPGTTAATEESHVTAKCNKRSFPDMN-----DDRS-ESRNN 54

Query: 51  ANASNATKSEEETT-PPSKTQVVGWPPIRSYRKNSLQAKKSEAEASG--IYVKVSMDGAP 107
           +N SN  K ++ETT PP+K QVVGWPP+RSYRKN  QA+K+EAEA+G  IYVKVSMDGAP
Sbjct: 55  SNVSNDKKGDQETTSPPTKAQVVGWPPVRSYRKNCFQARKTEAEAAGNGIYVKVSMDGAP 114

Query: 108 YLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVP 167
           YLRKI L +YK Y EL +ALEDMFKFKVG++SE EGYNGSEFVPTYEDKDGDWMLVGDVP
Sbjct: 115 YLRKIDLKVYKCYTELFQALEDMFKFKVGKFSEREGYNGSEFVPTYEDKDGDWMLVGDVP 174

Query: 168 WEMFITSCKRLRVMKGSEARGLGCAV 193
           W+MFI SCKRLR+MKGSEARGLGCAV
Sbjct: 175 WDMFINSCKRLRIMKGSEARGLGCAV 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62125392|gb|AAX63768.1| auxin-responsive protein IAA [Populus tomentosa]

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 147/206 (71%), Positives = 165/206 (80%), Gaps = 18/206 (8%)

Query: 1   MAFERDLNLEATELRLGLPGTQE------------SRSNKRSLPDMNIVDDQDHRSGSSR 48
           M FERDLNLEATELRLGLPGT              ++SNKRSLPDMN     +  +G S 
Sbjct: 1   MEFERDLNLEATELRLGLPGTATQQLEKQTPSSNVTKSNKRSLPDMN-----EDSAGRSE 55

Query: 49  VIANASNATKS-EEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAP 107
             + +SN  KS E+ET PP++T+VVGWPPIRSYRKN LQAKK EAEA+G+YVKVSMDGAP
Sbjct: 56  SSSVSSNDKKSDEQETAPPTETRVVGWPPIRSYRKNCLQAKKLEAEAAGLYVKVSMDGAP 115

Query: 108 YLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVP 167
           YLRKI L +YK YPELL+ +E+MFKFKVGE SE EGYNGSE+VPTYEDKDGDWMLVGDVP
Sbjct: 116 YLRKIDLKVYKGYPELLEVVEEMFKFKVGEPSEREGYNGSEYVPTYEDKDGDWMLVGDVP 175

Query: 168 WEMFITSCKRLRVMKGSEARGLGCAV 193
           WEMFI SCKRLR+MK SEARGLGCAV
Sbjct: 176 WEMFINSCKRLRIMKESEARGLGCAV 201

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442931|ref|XP_004139234.1| PREDICTED: auxin-induced protein 22D-like [Cucumis sativus] gi|449531952|ref|XP_004172949.1| PREDICTED: auxin-induced protein 22D-like [Cucumis sativus]

 Score =  275 bits (703), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 133/202 (65%), Positives = 161/202 (79%), Gaps = 17/202 (8%)

Query: 1   MAFERDLNLEATELRLGLPGT----------QESRSNKRSLPDMNIVDDQDHRSGSSRVI 50
           MAFE+DLNLEATELRLGLPGT            + SNKR+LP     DDQ+  S  SR  
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPS----DDQN--SSESRRE 54

Query: 51  ANASNATKSEEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLR 110
            N S+ +K  +E TPP+K QVVGWPP+RS+RKNSLQAKK E  A+G+++KVSMDGAP+LR
Sbjct: 55  IN-SDTSKCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLR 113

Query: 111 KIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEM 170
           K+ L IY+ YP+LL+ALE+MFKF +G++ E EGYNGSEFVPTYEDKDGDWMLVGDVPWEM
Sbjct: 114 KVDLKIYQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEM 173

Query: 171 FITSCKRLRVMKGSEARGLGCA 192
           F++SCK+LR+MKGSEA+GLGC 
Sbjct: 174 FMSSCKKLRIMKGSEAKGLGCG 195

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34550779|gb|AAQ74955.1| Gbiaa-Re [Gossypium barbadense]

 Score =  265 bits (678), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 129/196 (65%), Positives = 147/196 (75%), Gaps = 13/196 (6%)

Query: 1   MAFERDLNLEATELRLGLPGTQES---RSNKRSLPDMNIVDDQDHRSGSSRVIANASNAT 57
           + ++ DLNL ATELRLGLPGT+     RSNKRSL    + DD            N   + 
Sbjct: 5   VGYDNDLNLRATELRLGLPGTEPVSIVRSNKRSL--QQVADDD--------CGVNGCRSD 54

Query: 58  KSEEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNIY 117
              E   PP K Q+VGWPPIRSYRKN++Q KK+E+E  GIYVKVSMDGAPYLRKI L IY
Sbjct: 55  DQNETAPPPPKAQIVGWPPIRSYRKNNIQTKKNESEGGGIYVKVSMDGAPYLRKIDLKIY 114

Query: 118 KDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKR 177
             YPELL+A+E+MFKF +GEYSE EGY GS++ PTYEDKDGDWMLVGDVPWEMFITSCKR
Sbjct: 115 SGYPELLQAIENMFKFTIGEYSEREGYKGSDYAPTYEDKDGDWMLVGDVPWEMFITSCKR 174

Query: 178 LRVMKGSEARGLGCAV 193
           LR+MKGSEARGLGC V
Sbjct: 175 LRIMKGSEARGLGCGV 190

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451360|ref|XP_002279955.1| PREDICTED: auxin-induced protein 22D [Vitis vinifera] gi|298204847|emb|CBI34154.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/198 (66%), Positives = 150/198 (75%), Gaps = 16/198 (8%)

Query: 3   FERDLNLEATELRLGLPGTQESR---------SNKRSLPDMNIVDDQDHRSGSSRVIANA 53
           +E+DLNLEATELRLGLPGT++           SNKR+LPDMN           S   ++ 
Sbjct: 7   YEKDLNLEATELRLGLPGTKKPEKQAPPSLKTSNKRALPDMN-------EESGSGNNSSV 59

Query: 54  SNATKSEEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIH 113
           S+  KS  ET P  K QVVGWPP+RSYRK+  Q KK+EAE    Y+KVSMDGAPYLRKI 
Sbjct: 60  SDDGKSHRETAPAPKAQVVGWPPVRSYRKSCFQPKKTEAEEGRTYLKVSMDGAPYLRKID 119

Query: 114 LNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFIT 173
           L +YK YPELLKALE+MFKF VG+YSE EGYNGSE+ PTYEDKDGDWMLVGDVPW MFI+
Sbjct: 120 LKVYKGYPELLKALEEMFKFSVGQYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFIS 179

Query: 174 SCKRLRVMKGSEARGLGC 191
           SCKRLR+MKGSEARGLGC
Sbjct: 180 SCKRLRIMKGSEARGLGC 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085579|ref|XP_002307625.1| predicted protein [Populus trichocarpa] gi|222857074|gb|EEE94621.1| predicted protein [Populus trichocarpa]

 Score =  262 bits (670), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 131/201 (65%), Positives = 156/201 (77%), Gaps = 16/201 (7%)

Query: 1   MAFERDLNLEATELRLGLPGTQES---------RSNKRSLPDMNIVDDQDHRSGSSRVIA 51
           MA+E DLNL+ATELRLGLPG+ E          RSNKR+ P+++        S S    +
Sbjct: 1   MAYESDLNLKATELRLGLPGSDEPEKPSTTPSVRSNKRASPEIS------EESRSKGSSS 54

Query: 52  NASNATKSEEETTPPSKTQVVGWPPIRSYRKNSLQAKKS-EAEASGIYVKVSMDGAPYLR 110
            +SN    E ++ PP+K QVVGWPPIRSYRKN LQ KK+ + + +G+YVKVS+DGAPYLR
Sbjct: 55  VSSNVENGERDSAPPAKAQVVGWPPIRSYRKNCLQPKKNDQVDGAGMYVKVSVDGAPYLR 114

Query: 111 KIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEM 170
           KI L +YK YPELLKALE+MFK  +GEYSE+EGYNGSEF PTYEDKDGDWMLVGDVPW+M
Sbjct: 115 KIDLKVYKSYPELLKALENMFKLTIGEYSENEGYNGSEFAPTYEDKDGDWMLVGDVPWDM 174

Query: 171 FITSCKRLRVMKGSEARGLGC 191
           FI+SCKRLR+MKGSEARGLGC
Sbjct: 175 FISSCKRLRIMKGSEARGLGC 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2170862	186	ATAUX2-11 "AT5G43700" [Arabido	0.896	0.930	0.580	1.6e-54
TAIR|locus:2018379	189	SHY2 "SHORT HYPOCOTYL 2" [Arab	0.948	0.968	0.587	1.1e-53
UNIPROTKB|P49679	189	IAA4/5 "Auxin-induced protein	0.943	0.962	0.536	6.7e-49
TAIR|locus:2094578	174	IAA2 "indole-3-acetic acid ind	0.642	0.712	0.631	9.6e-41
TAIR|locus:2129910	168	IAA1 "indole-3-acetic acid ind	0.647	0.744	0.628	2.6e-40
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.647	0.486	0.592	5.8e-40
UNIPROTKB|Q75GK0	233	IAA11 "Auxin-responsive protei	0.751	0.622	0.525	4e-39
UNIPROTKB|Q5NB25	263	IAA3 "Auxin-responsive protein	0.901	0.661	0.463	4e-39
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.518	0.423	0.548	2.2e-38
TAIR|locus:2090141	197	IAA19 "indole-3-acetic acid in	0.932	0.913	0.457	1.3e-36

TAIR|locus:2170862 ATAUX2-11 "AT5G43700" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 112/193 (58%), Positives = 137/193 (70%)

Query:     3 FERDLNLEATELRLGLPGTQES----RSNKRSLPDMNIVDDQDHRSGSSRVIANASNATK 58
             ++  +NL+ATELRLGLPGT+E+    +SNKR LP+    + +   +G +           
Sbjct:     7 YDELVNLKATELRLGLPGTEETVSCGKSNKRVLPEAT--EKEIESTGKT----------- 53

Query:    59 SEEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNIYK 118
                ET  P K Q+VGWPP+RSYRKN++Q KKSE+E  G YVKVSMDGAPYLRKI L +YK
Sbjct:    54 ---ETASPPKAQIVGWPPVRSYRKNNVQTKKSESEGQGNYVKVSMDGAPYLRKIDLTMYK 110

Query:   119 DYPELLKALEDMFKFKVXXXXXXXXXXXXXFVPTYEDKDGDWMLVGDVPWEMFITSCKRL 178
              YPEL+K+LE+MFKF V             FVPTYEDKDGDWMLVGDVPWEMF++SCKRL
Sbjct:   111 QYPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRL 170

Query:   179 RVMKGSEARGLGC 191
             R+MKGSE +GLGC
Sbjct:   171 RIMKGSEVKGLGC 183

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;ISS;RCA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2018379 SHY2 "SHORT HYPOCOTYL 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 111/189 (58%), Positives = 134/189 (70%)

Query:     7 LNLEATELRLGLPGTQESRSNKRSLPDMNIVDDQDHRSGSSRVIANASNATKSEEETTPP 66
             +NL+ TELRLGLPGT      K  +   N  + +   + + + I ++S  T    ET+PP
Sbjct:     5 VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKT----ETSPP 60

Query:    67 SKTQVVGWPPIRSYRKNSLQAKKSEAE--ASGIYVKVSMDGAPYLRKIHLNIYKDYPELL 124
              K Q+VGWPP+RSYRKN++Q+KK+E+E    GIYVKVSMDGAPYLRKI L+ YK Y ELL
Sbjct:    61 RKAQIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELL 120

Query:   125 KALEDMFKFKVXXXXXXXXXXXXXFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRVMKGS 184
             KALE MFKF V             FVPTYEDKDGDWML+GDVPWEMFI +CKRLR+MKGS
Sbjct:   121 KALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGS 180

Query:   185 EARGLGCAV 193
             EA+GLGC V
Sbjct:   181 EAKGLGCGV 189

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

UNIPROTKB|P49679 IAA4/5 "Auxin-induced protein IAA4" [Pisum sativum (taxid:3888)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 104/194 (53%), Positives = 129/194 (66%)

Query:     7 LNLEATELRLGLPGTQESRSNKRSLPDMNIVDDQDHRS--GSSRVIANASNATKSEE--E 62
             +  +ATELRLGLPG  E    K+ +   ++V + + R    +S    + S  T  E   E
Sbjct:     1 MEFKATELRLGLPGITEEEE-KKIIHGSSVVKNNNKRQLPQTSEESVSISKVTNDEHIVE 59

Query:    63 TT---PPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNIYKD 119
             ++   PP+K ++VGWPPIRSYRKNSL     EA+  GI+VKVSMDGAPYLRKI L +Y  
Sbjct:    60 SSSAAPPAKAKIVGWPPIRSYRKNSLH----EADVGGIFVKVSMDGAPYLRKIDLRVYGG 115

Query:   120 YPELLKALEDMFKFKVXXXXXXXXXXXXXFVPTYEDKDGDWMLVGDVPWEMFITSCKRLR 179
             Y ELLKALE MFK  +             + PTYEDKDGDWMLVGDVPW+MF+TSCKRLR
Sbjct:   116 YSELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLR 175

Query:   180 VMKGSEARGLGCAV 193
             +MKG+EA+GLGC V
Sbjct:   176 IMKGTEAKGLGCGV 189

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2094578 IAA2 "indole-3-acetic acid inducible 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 84/133 (63%), Positives = 97/133 (72%)

Query:    57 TKSEEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNI 116
             T+ EEE+TPP+KTQ+VGWPP+RS RKN+             YVKVSMDGAPYLRKI L  
Sbjct:    47 TRDEEESTPPTKTQIVGWPPVRSSRKNNNSVS---------YVKVSMDGAPYLRKIDLKT 97

Query:   117 YKDYPELLKALEDMFKFKVXXXXXXXXXXXXXFVPTYEDKDGDWMLVGDVPWEMFITSCK 176
             YK+YPELLKALE+MFK  +             FVPTYEDKDGDWMLVGDVPW+MF +SCK
Sbjct:    98 YKNYPELLKALENMFKVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCK 157

Query:   177 RLRVMKGSEARGL 189
             RLR+MKGS+A  L
Sbjct:   158 RLRIMKGSDAPAL 170

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2129910 IAA1 "indole-3-acetic acid inducible" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 83/132 (62%), Positives = 96/132 (72%)

Query:    55 NATKSEEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHL 114
             N   +EE   PP+KTQ+VGWPP+RS RKN+     S       YVKVSMDGAPYLRKI L
Sbjct:    40 NNDSTEESAPPPAKTQIVGWPPVRSNRKNNNNKNVS-------YVKVSMDGAPYLRKIDL 92

Query:   115 NIYKDYPELLKALEDMFKFKVXXXXXXXXXXXXXFVPTYEDKDGDWMLVGDVPWEMFITS 174
              +YK+YPELLKALE+MFKF V             FVPTYEDKDGDWMLVGDVPW+MF +S
Sbjct:    93 KMYKNYPELLKALENMFKFTVGEYSEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSS 152

Query:   175 CKRLRVMKGSEA 186
             C++LR+MKGSEA
Sbjct:   153 CQKLRIMKGSEA 164

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 382 (139.5 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 80/135 (59%), Positives = 93/135 (68%)

Query:    65 PPSKTQVVGWPPIRSYRKNS-----LQAKKSEAEAS-G---IYVKVSMDGAPYLRKIHLN 115
             P +K QVVGWPPIRSYRKN+     L++ K +AEA  G   +YVKVSMDGAPYLRK+ L 
Sbjct:   111 PAAKAQVVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLK 170

Query:   116 IYKDYPELLKALEDMF-KFKVXXXXXXXXXXXXXFVPTYEDKDGDWMLVGDVPWEMFITS 174
              YK+Y +L  ALE MF  F               +V TYEDKDGDWMLVGDVPWEMF  S
Sbjct:   171 TYKNYKDLSTALEKMFIGFTTGKDGLSESRKDGEYVLTYEDKDGDWMLVGDVPWEMFANS 230

Query:   175 CKRLRVMKGSEARGL 189
             C+RLR+MKGS+A GL
Sbjct:   231 CRRLRIMKGSDAIGL 245

GO:0009733 "response to auxin stimulus" evidence=ISS

UNIPROTKB|Q75GK0 IAA11 "Auxin-responsive protein IAA11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 378 (138.1 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 83/158 (52%), Positives = 100/158 (63%)

Query:    41 DHRSGSSRVIANASNATKSEEETTPPS-KTQVVGWPPIRSYRKNSLQAKKSEAEASGIYV 99
             D +    R  + +S  T   +   P + K QVVGWPP+RS+RKN L A+K +A A    V
Sbjct:    70 DEKMSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPPVRSFRKNVL-AEKCKAAA---LV 125

Query:   100 KVSMDGAPYLRKIHLNIYKDYPELLKALEDMF-KFKVXXXXXXXXXXXXX-------FVP 151
             KVSMDGAPYLRKI + +YK YPEL  A ++MF  F +                    +VP
Sbjct:   126 KVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQQLKESNKLRDDLEYVP 185

Query:   152 TYEDKDGDWMLVGDVPWEMFITSCKRLRVMKGSEARGL 189
             TYEDKDGDWMLVGDVPWEMF+ SCKRLR+MKGSEA GL
Sbjct:   186 TYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGL 223

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q5NB25 IAA3 "Auxin-responsive protein IAA3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 372 (136.0 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 90/194 (46%), Positives = 110/194 (56%)

Query:    11 ATELRLGLPGTQESRSNKRSLPDMNIVDDQDHRSGSSRVIANASNATKSEEE---TTPP- 66
             AT L L LP    ++  KR  PD   +      +G  +           EE+     PP 
Sbjct:    63 ATTLEL-LP----AKGAKRVFPDEAALTPPTAAAGKGKAAREGEEVGAEEEDKKVAAPPQ 117

Query:    67 --SKTQVVGWPPIRSYRKNSL---QAK--KSEAEAS---G-IYVKVSMDGAPYLRKIHLN 115
               +K QVVGWPPIRSYRKN++   Q K  K + +A    G +YVKVSMDGAPYLRK+ L 
Sbjct:   118 PAAKAQVVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLK 177

Query:   116 IYKDYPELLKALEDMFKFKVXXXXXXXXXXXXXFVPTYEDKDGDWMLVGDVPWEMFITSC 175
              YK+Y ++   LE MF                 +V TYEDKDGDWMLVGDVPWEMF  SC
Sbjct:   178 TYKNYKDMSLGLEKMFIGFSTGKEGAENQKDGEYVLTYEDKDGDWMLVGDVPWEMFTDSC 237

Query:   176 KRLRVMKGSEARGL 189
             +RLR+MKGS+A GL
Sbjct:   238 RRLRIMKGSDAIGL 251

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
 Identities = 62/113 (54%), Positives = 71/113 (62%)

Query:    90 SEAEASGIYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFK-FKVXX----------- 137
             + A A+  YVKVSMDGAPYLRKI L +YK Y +L  AL  MF  F +             
Sbjct:   112 ASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMN 171

Query:   138 -XXXXXXXXXXXFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRVMKGSEARGL 189
                         +VPTYEDKDGDWMLVGDVPWEMF+ SCKR+R+MKGSEA GL
Sbjct:   172 ESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGL 224

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2090141 IAA19 "indole-3-acetic acid inducible 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 86/188 (45%), Positives = 113/188 (60%)

Query:     7 LNLEATELRLGLPGTQ--ESRSNKRSLPDMNIVDDQDHRSG-SSRVIANASNATKSEEET 63
             L LE TELRLGLPG    E    KR+  +MN+     +     S V+++  +A K  +  
Sbjct:     6 LGLEITELRLGLPGRDVAEKMMKKRAFTEMNMTSSGSNSDQCESGVVSSGGDAEKVND-- 63

Query:    64 TPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGI-YVKVSMDGAPYLRKIHLNIYKDYPE 122
             +P +K+QVVGWPP+ SYRK +   K++     G+ YVKVSMDG PYLRK+ L   + Y +
Sbjct:    64 SPAAKSQVVGWPPVCSYRKKN-SCKEASTTKVGLGYVKVSMDGVPYLRKMDLGSSQGYDD 122

Query:   123 LLKALEDMFKFKVXXXXXXXXXXXXXFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRVMK 182
             L  AL+ +F F+              +V  YEDKDGDWML GDVPW MF+ SCKRLR+MK
Sbjct:   123 LAFALDKLFGFR-GIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPWGMFLESCKRLRIMK 181

Query:   183 GSEARGLG 190
              S+A G G
Sbjct:   182 RSDATGFG 189

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009630 "gravitropism" evidence=NAS

GO:0009638 "phototropism" evidence=NAS

GO:0009733 "response to auxin stimulus" evidence=RCA;NAS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0080086 "stamen filament development" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32294	AX22B_VIGRR	No assigned EC number	0.6195	0.9326	0.9183	N/A	no
P49679	IAA4_PEA	No assigned EC number	0.5927	0.9430	0.9629	N/A	no
P33077	IAA4_ARATH	No assigned EC number	0.6205	0.9067	0.9408	yes	no
P0C133	IAA31_ORYSJ	No assigned EC number	0.5123	0.8860	0.8680	yes	no
O24542	AX22D_VIGRR	No assigned EC number	0.6598	0.9274	0.9274	N/A	no
O24543	AX22E_VIGRR	No assigned EC number	0.5911	0.9689	0.9211	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	3e-96

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  276 bits (709), Expect = 3e-96
 Identities = 108/197 (54%), Positives = 127/197 (64%), Gaps = 19/197 (9%)

Query: 7   LNLEATELRLGLPGTQES---------RSNKRSLPDMNIVDDQDHRSGSSRVIANASNAT 57
           LNL+ATELRLGLPG  E           SNKR   ++           S     +  + +
Sbjct: 1   LNLKATELRLGLPGGSEPESEPSTSSVTSNKRGFSEVTEDGISS----SLGEDKSTISVS 56

Query: 58  KSEEETTPPSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNIY 117
            + +   PP+K QVVGWPP+RSYRKNSL+ KKS +     YVKVSMDGAPYLRK+ L +Y
Sbjct: 57  SNGDSAKPPAKAQVVGWPPVRSYRKNSLREKKSGS-----YVKVSMDGAPYLRKVDLKMY 111

Query: 118 KDYPELLKALEDMF-KFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCK 176
           K Y EL  ALE MF  F +GE    +  NGSE+VPTYEDKDGDWMLVGDVPWEMF+ SCK
Sbjct: 112 KSYDELSSALEKMFSCFTIGESGLLDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCK 171

Query: 177 RLRVMKGSEARGLGCAV 193
           RLR+MKGSEA GL    
Sbjct: 172 RLRIMKGSEAIGLAPRS 188

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.71
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.46
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.42
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.38
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	97.24
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	97.11
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	96.88
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	96.38
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	96.36
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	96.17
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	95.59
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	95.5
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	93.85

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=4.2e-65  Score=429.69  Aligned_cols=184  Identities=52%  Similarity=0.853  Sum_probs=6.0

Q ss_pred             CCccccccccCCCCCCc------------ccCCcCCCCCCCCCCccc-----cCCCcchhhcc-c---ccCCCCCCCCCC
Q 029427            7 LNLEATELRLGLPGTQE------------SRSNKRSLPDMNIVDDQD-----HRSGSSRVIAN-A---SNATKSEEETTP   65 (193)
Q Consensus         7 l~l~~TELrLGLPG~~~------------~~~~KR~~~e~~~~~~~~-----~~~~~~~~~~~-~---~~~~~~~~~~~p   65 (193)
                      |||++|||||||||+.+            ..++||+|+++++.....     ........... .   ..........+|
T Consensus         1 ln~~~TELrLGLPG~~~~~~~~~~~~~~~~~~~kR~F~~aid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   80 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPDASSSSSSKKSSSGNKRGFSEAIDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSSDSSSSSPP   80 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCCcccccccccccCcccccchhhhhhcccccccccccccccCcccccccccccccccccCCCC
Confidence            79999999999999852            256899999987543210     00000000000 0   000112233345


Q ss_pred             CCCCCcccCCCCcchhhhhhhhhccccccCCceeEEEEcCccccceeecCCCCChHHHHHHHHhHhc-ccccccc-----
Q 029427           66 PSKTQVVGWPPIRSYRKNSLQAKKSEAEASGIYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFK-FKVGEYS-----  139 (193)
Q Consensus        66 ~~k~qvVGWPPVrs~Rkn~~~~~~~~~~~~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~-~~~g~~~-----  139 (193)
                      .+++|+||||||++||+|.+...+..  ..++||||+|||+||||||||++|+||++|+.+|++||+ +.|+++.     
T Consensus        81 ~~~~~~vgwpp~~s~r~n~~~~~~~~--~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~  158 (215)
T PF02309_consen   81 ASKAQVVGWPPVRSFRKNSLSEKQSS--SSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLN  158 (215)
T ss_dssp             -----BTTBS----S-----------------------------------------------------------------
T ss_pred             cccccccCCCcccccccccccccccc--cCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCcccccccccc
Confidence            57899999999999999987622211  237999999999999999999999999999999999995 4443110     


Q ss_pred             ---ccCCCCCCcceeEEEcCCCCeEEccCCChHHHhhccceeEEecCCcccccccC
Q 029427          140 ---ESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSCKRLRVMKGSEARGLGCA  192 (193)
Q Consensus       140 ---~~~~~~~s~~~ltYeDkdGDwMLVGDvPW~mFv~svkRLrImk~sea~gl~~~  192 (193)
                         ..+..++++|+|||||+||||||||||||+|||++|||||||+.+|++||+|.
T Consensus       159 ~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r  214 (215)
T PF02309_consen  159 ESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPR  214 (215)
T ss_dssp             --------------------------------------------------------
T ss_pred             chhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCC
Confidence               01123578999999999999999999999999999999999999999999985

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.71  E-value=9.6e-05  Score=52.67  Aligned_cols=68  Identities=25%  Similarity=0.379  Sum_probs=55.1

Q ss_pred             eeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC-CChHHHhhccc
Q 029427           98 YVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD-VPWEMFITSCK  176 (193)
Q Consensus        98 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~svk  176 (193)
                      -||+...|. +=|.+.+..--+|++|...++..|++.           ...+.+.|.|.||||..+-+ .=|++.++.++
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~-----------~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~   70 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL-----------DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAK   70 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS-----------TSSEEEEEEETTSSEEEESSHHHHHHHHHHHH
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC-----------CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHH
Confidence            379999997 434688888889999999999999975           13679999999999998874 45888777775


Q ss_pred             e
Q 029427          177 R  177 (193)
Q Consensus       177 R  177 (193)
                      +
T Consensus        71 ~   71 (84)
T PF00564_consen   71 E   71 (84)
T ss_dssp             H
T ss_pred             h
Confidence            3

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.46  E-value=0.00047  Score=52.19  Aligned_cols=68  Identities=21%  Similarity=0.296  Sum_probs=52.8

Q ss_pred             eeEEEEcCccccceeecC---CCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccCCChHHHhhc
Q 029427           98 YVKVSMDGAPYLRKIHLN---IYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITS  174 (193)
Q Consensus        98 ~VKV~MdG~pigRKVDL~---~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDvPW~mFv~s  174 (193)
                      -|||.-+|.-+=-++++.   .--+|++|...+.+.|.+.          ...+|++.|.|.||||..+-..  +.|..+
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~----------~~~~~~l~Y~Dedgd~V~l~~D--~DL~~a   69 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS----------PDADLSLTYTDEDGDVVTLVDD--NDLTDA   69 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC----------CCCcEEEEEECCCCCEEEEccH--HHHHHH
Confidence            489999998555555554   4679999999999999874          2357899999999999998665  556555


Q ss_pred             cce
Q 029427          175 CKR  177 (193)
Q Consensus       175 vkR  177 (193)
                      +.+
T Consensus        70 ~~~   72 (91)
T cd06398          70 IQY   72 (91)
T ss_pred             HHH
Confidence            554

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.42  E-value=0.00061  Score=50.57  Aligned_cols=54  Identities=26%  Similarity=0.426  Sum_probs=43.9

Q ss_pred             eEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEcc
Q 029427           99 VKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVG  164 (193)
Q Consensus        99 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG  164 (193)
                      |||...|.  .+.+-|..--+|++|.+.+.++|++.          +.+.|.|.|.|.||||.++-
T Consensus         3 vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~----------~~~~f~LkY~Ddegd~v~lt   56 (82)
T cd06407           3 VKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLD----------DMSAFDLKYLDDDEEWVLLT   56 (82)
T ss_pred             EEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCC----------CCCeeEEEEECCCCCeEEee
Confidence            79999887  44455555669999999999999974          12478999999999999864

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>smart00666 PB1 PB1 domain

Probab=97.38  E-value=0.001  Score=47.30  Aligned_cols=65  Identities=22%  Similarity=0.359  Sum_probs=51.7

Q ss_pred             eEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC-CChHHHhhccc
Q 029427           99 VKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD-VPWEMFITSCK  176 (193)
Q Consensus        99 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~svk  176 (193)
                      |||.-.|.  -|.+-+..--+|++|...+.+.|++..           ..+.+.|+|.||||..+.+ .=|.+.++.++
T Consensus         4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~~~-----------~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~   69 (81)
T smart00666        4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGLDN-----------QSFTLKYQDEDGDLVSLTSDEDLEEAIEEYD   69 (81)
T ss_pred             EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCCCC-----------CCeEEEEECCCCCEEEecCHHHHHHHHHHHH
Confidence            67877543  677778888999999999999999741           3579999999999987665 56777777665

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=97.24  E-value=0.0019  Score=45.69  Aligned_cols=66  Identities=23%  Similarity=0.393  Sum_probs=51.8

Q ss_pred             eeEEEEcCccccceeecC-CCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC-CChHHHhhcc
Q 029427           98 YVKVSMDGAPYLRKIHLN-IYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD-VPWEMFITSC  175 (193)
Q Consensus        98 ~VKV~MdG~pigRKVDL~-~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~sv  175 (193)
                      -|||.-.|.  -|.+=+. .--+|++|...|.+.|++..           ..+.+.|.|.||||..+.+ .=|++.++.+
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~~-----------~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~   68 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLDA-----------VSFKLKYPDEDGDLVTISSDEDLEEAIEEA   68 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCCC-----------CcEEEEeeCCCCCEEEeCCHHHHHHHHHHH
Confidence            368888765  3444444 88899999999999999752           2579999999999999887 5677777766


Q ss_pred             c
Q 029427          176 K  176 (193)
Q Consensus       176 k  176 (193)
                      +
T Consensus        69 ~   69 (81)
T cd05992          69 R   69 (81)
T ss_pred             h
Confidence            5

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=97.11  E-value=0.0017  Score=48.59  Aligned_cols=53  Identities=13%  Similarity=0.202  Sum_probs=46.5

Q ss_pred             eEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEcc
Q 029427           99 VKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVG  164 (193)
Q Consensus        99 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG  164 (193)
                      |||.-.|.-+--+++-+..-+|++|...+.++|++.             .+.+.|-|.||||.++-
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~-------------~f~lKYlDde~e~v~ls   55 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN-------------DIQIKYVDEENEEVSVN   55 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC-------------cceeEEEcCCCCEEEEE
Confidence            799999997777888877889999999999999986             25799999999998874

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=96.88  E-value=0.0049  Score=46.29  Aligned_cols=72  Identities=24%  Similarity=0.454  Sum_probs=49.0

Q ss_pred             eEEEEcCccccceeecCCC-CChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccCC---ChHHHhhc
Q 029427           99 VKVSMDGAPYLRKIHLNIY-KDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDV---PWEMFITS  174 (193)
Q Consensus        99 VKV~MdG~pigRKVDL~~~-~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv---PW~mFv~s  174 (193)
                      +|+..+|. | |++=+..- -+|.+|...+++.|....+        ....+.+.|.|.|||+.-+.+-   -|..-+..
T Consensus         3 iK~~~g~D-i-R~~~~~~~~~t~~~L~~~v~~~F~~~~~--------~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~~   72 (81)
T cd06401           3 LKAQLGDD-I-RRIPIHNEDITYDELLLMMQRVFRGKLG--------SSDDVLIKYKDEDGDLITIFDSSDLSFAIQCSR   72 (81)
T ss_pred             EEEEeCCe-E-EEEeccCccccHHHHHHHHHHHhccccC--------CcccEEEEEECCCCCEEEeccHHHHHHHHhcCc
Confidence            57666555 4 44433332 3999999999999995432        2357899999999999999875   33333334


Q ss_pred             cceeEE
Q 029427          175 CKRLRV  180 (193)
Q Consensus       175 vkRLrI  180 (193)
                      .+||+|
T Consensus        73 ~~~l~~   78 (81)
T cd06401          73 ILKLTL   78 (81)
T ss_pred             ceEEEE
Confidence            445555

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=96.38  E-value=0.0082  Score=45.35  Aligned_cols=51  Identities=18%  Similarity=0.189  Sum_probs=39.9

Q ss_pred             ccccceeecC--CCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEcc
Q 029427          106 APYLRKIHLN--IYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVG  164 (193)
Q Consensus       106 ~pigRKVDL~--~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG  164 (193)
                      +|-||.+=++  ...|+.+|..++.+-|+...-        ....|.|.|.|.||||.++-
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~--------~~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDF--------ETHLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc--------cCCcccEEEEcCCCCEEEEe
Confidence            5677765554  378999999999999997521        13478999999999999874

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.36  E-value=0.01  Score=44.76  Aligned_cols=55  Identities=24%  Similarity=0.378  Sum_probs=45.1

Q ss_pred             eEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC
Q 029427           99 VKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD  165 (193)
Q Consensus        99 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD  165 (193)
                      +|+.-.|.-.--.+|.  .-+|++|.+.+.+||.+..          ...|++.|.|.|||---+..
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~~----------~q~ft~kw~DEEGDp~tiSS   57 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFHN----------DQPFTLKWIDEEGDPCTISS   57 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCCC----------CCcEEEEEECCCCCceeecC
Confidence            7899999866556666  6789999999999999852          34689999999999877654

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.17  E-value=0.014  Score=43.83  Aligned_cols=67  Identities=21%  Similarity=0.317  Sum_probs=49.4

Q ss_pred             eEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEcc-CCChHHHhhccc
Q 029427           99 VKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVG-DVPWEMFITSCK  176 (193)
Q Consensus        99 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG-DvPW~mFv~svk  176 (193)
                      ||...|..=-=-.+|.....+|++++.-|+.||.+.           +-.|++-|.|.+||.+-+- |+-+..-+++++
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~-----------~~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~   70 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIP-----------NVDFLIGYTDPHGDLLPINNDDNFLKALSSAN   70 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCC-----------CCcEEEEEeCCCCCEecccCcHHHHHHHHcCC
Confidence            566666653222455556699999999999999975           2368999999999999875 445555566776

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=95.59  E-value=0.042  Score=41.45  Aligned_cols=64  Identities=22%  Similarity=0.266  Sum_probs=49.5

Q ss_pred             eEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC-CChHHHhhcc
Q 029427           99 VKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD-VPWEMFITSC  175 (193)
Q Consensus        99 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~sv  175 (193)
                      -||+-+|.  .|++-...-=+|..|.+.|+.+|.+..          . .+.+||.|.|||..-+-| .=-+.|.+-.
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~----------~-~~~vtYiDeD~D~ITlssd~eL~d~~~~~   67 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE----------I-KVGVTYIDNDNDEITLSSNKELQDFYRLS   67 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh----------h-HeEEEEEcCCCCEEEecchHHHHHHHHhc
Confidence            37888886  788888888999999999999999861          1 268999999999876544 4555555433

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=95.50  E-value=0.066  Score=40.55  Aligned_cols=58  Identities=21%  Similarity=0.398  Sum_probs=43.4

Q ss_pred             eeEEEEcC---cccccee--ecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC
Q 029427           98 YVKVSMDG---APYLRKI--HLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD  165 (193)
Q Consensus        98 ~VKV~MdG---~pigRKV--DL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD  165 (193)
                      .||.+..|   .+==|++  |=....+|++|...+.++|...          .+..|++.|.|.|||..-+..
T Consensus         2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l----------~~~~ftlky~DeeGDlvtIss   64 (87)
T cd06402           2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSL----------RGKNFQLFWKDEEGDLVAFSS   64 (87)
T ss_pred             eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHcccc----------CCCcEEEEEECCCCCEEeecC
Confidence            57777766   2333444  4466679999999999999753          134789999999999987764

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=93.85  E-value=0.22  Score=37.76  Aligned_cols=64  Identities=25%  Similarity=0.413  Sum_probs=49.8

Q ss_pred             eeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccCC-ChHHHhhccc
Q 029427           98 YVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDV-PWEMFITSCK  176 (193)
Q Consensus        98 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv-PW~mFv~svk  176 (193)
                      =|||+-.|.  .|-|-+..-=+|++|...+.++|++.            ..+.+-|.|. ||..-+++- =-++-+.++|
T Consensus         4 kVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~~------------~~~~iKykDE-GD~iti~sq~DLd~Ai~~a~   68 (86)
T cd06408           4 RVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGFK------------RRLKIKMKDD-GDMITMGDQDDLDMAIDTAR   68 (86)
T ss_pred             EEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCCC------------CceEEEEEcC-CCCccccCHHHHHHHHHHHH
Confidence            489998888  56677777778999999999999984            1578999999 999888874 3444455544

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.76
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.52
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.3
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	94.37
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	93.27
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	89.45
1wj6_A	101	KIAA0049 protein, RSGI RUH-024; PB1 domain, protei	89.34
1pqs_A	77	Cell division control protein 24; alpha and beta p	88.21
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	87.17
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	86.84

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.76  E-value=0.0028  Score=46.97  Aligned_cols=56  Identities=23%  Similarity=0.307  Sum_probs=44.0

Q ss_pred             ceeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEcc
Q 029427           97 IYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVG  164 (193)
Q Consensus        97 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG  164 (193)
                      .=||++..|.-+  .+.+..--+|++|...|.++|.+..          +..+++.|.|.|||+.-+-
T Consensus         7 vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~~----------~~~f~lky~DEeGD~itis   62 (89)
T 1vd2_A            7 VRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFDN----------EQLFTMKWIDEEGDPCTVS   62 (89)
T ss_dssp             EEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCCS----------SCCEEEEECCSSSCCEECC
T ss_pred             EEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCCC----------CCeEEEEEECCCCCccccc
Confidence            467889999844  4444446799999999999999752          2468999999999987654

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.52  E-value=0.0068  Score=44.85  Aligned_cols=69  Identities=16%  Similarity=0.213  Sum_probs=52.2

Q ss_pred             ceeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccCC-ChHHHhhcc
Q 029427           97 IYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDV-PWEMFITSC  175 (193)
Q Consensus        97 ~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv-PW~mFv~sv  175 (193)
                      .-||...|..--=-.+|-..-.+|++|+.-|+++|.+.           ..+|++.|.|.|||++-+-+. -..+=+.++
T Consensus         7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-----------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a   75 (86)
T 1wmh_B            7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-----------GLDVLLGYTDAHGDLLPLTNDDSLHRALASG   75 (86)
T ss_dssp             EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-----------TCCCEEEEECTTSCEEECCSHHHHHHHTTSS
T ss_pred             EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-----------CCCEEEEEECCCCCEeeecCHHHHHHHHHhC
Confidence            45788888874444566667789999999999999853           236899999999999988654 444445666


Q ss_pred             c
Q 029427          176 K  176 (193)
Q Consensus       176 k  176 (193)
                      |
T Consensus        76 ~   76 (86)
T 1wmh_B           76 P   76 (86)
T ss_dssp             S
T ss_pred             C
Confidence            6

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.30  E-value=0.032  Score=42.19  Aligned_cols=61  Identities=18%  Similarity=0.259  Sum_probs=44.4

Q ss_pred             CceeEEEEcCc----cccceeecCC-----------CCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCe
Q 029427           96 GIYVKVSMDGA----PYLRKIHLNI-----------YKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDW  160 (193)
Q Consensus        96 ~~~VKV~MdG~----pigRKVDL~~-----------~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDw  160 (193)
                      +.-||++..|.    .=-|++-|..           -.+|++|...++++|..-          .+..|.+.|.|.|||+
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l----------~~~~f~l~Y~DedGDl   74 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL----------RPGGFQAHYRAERGDL   74 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS----------CSSCEEEEEECTTCCE
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc----------CCCcEEEEEECCCCCE
Confidence            35688888752    2345555532           248999999999999842          1246899999999999


Q ss_pred             EEccCC
Q 029427          161 MLVGDV  166 (193)
Q Consensus       161 MLVGDv  166 (193)
                      .-+-+.
T Consensus        75 ItiSsD   80 (102)
T 2kkc_A           75 VAFSSD   80 (102)
T ss_dssp             EEECSH
T ss_pred             EEecCH
Confidence            877654

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=94.37  E-value=0.086  Score=40.86  Aligned_cols=62  Identities=19%  Similarity=0.235  Sum_probs=44.5

Q ss_pred             CCceeEEEEcC----ccccceeecC-----------CCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCC
Q 029427           95 SGIYVKVSMDG----APYLRKIHLN-----------IYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGD  159 (193)
Q Consensus        95 ~~~~VKV~MdG----~pigRKVDL~-----------~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGD  159 (193)
                      ...-||++..|    ..==|++-|.           .-.+|++|...++++|..-          .+..|.+.|.|.|||
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L----------~~~~f~l~YkDEdGD   88 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL----------RPGGFQAHYRAERGD   88 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS----------CSSCEEEEEECTTCC
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc----------CCCcEEEEEECCCCC
Confidence            35788999975    1223555553           1359999999999999732          123689999999999


Q ss_pred             eEEccCC
Q 029427          160 WMLVGDV  166 (193)
Q Consensus       160 wMLVGDv  166 (193)
                      +.-+-..
T Consensus        89 lItISsD   95 (117)
T 2ktr_A           89 LVAFSSD   95 (117)
T ss_dssp             EEEECSH
T ss_pred             EEEecCH
Confidence            9877653

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=93.27  E-value=0.21  Score=37.64  Aligned_cols=74  Identities=15%  Similarity=0.320  Sum_probs=54.0

Q ss_pred             ceeEEEEcCc------cccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC-CChH
Q 029427           97 IYVKVSMDGA------PYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD-VPWE  169 (193)
Q Consensus        97 ~~VKV~MdG~------pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~  169 (193)
                      .-|||+-+..      .=.|.|=...--+|++|+..+.+-|.+..+.     .. .....+-|+|.|||+...++ .=|+
T Consensus         6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~-----~i-~~~~klkYkDEdGD~Vtl~sddDl~   79 (98)
T 1q1o_A            6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNN-----NI-SPITKIKYQDEDGDFVVLGSDEDWN   79 (98)
T ss_dssp             EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSS-----CC-CCCCCEEEECSSSCEEEECSHHHHH
T ss_pred             EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccc-----cc-cceeEEEEEcCCCCEEEEcCHHHHH
Confidence            4678887742      1236666778889999999999999964111     00 13468999999999988776 5899


Q ss_pred             HHhhccc
Q 029427          170 MFITSCK  176 (193)
Q Consensus       170 mFv~svk  176 (193)
                      |-+++++
T Consensus        80 ~A~e~~~   86 (98)
T 1q1o_A           80 VAKEMLA   86 (98)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888763

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=89.45  E-value=0.94  Score=33.46  Aligned_cols=54  Identities=7%  Similarity=0.112  Sum_probs=42.4

Q ss_pred             eeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEcc
Q 029427           98 YVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVG  164 (193)
Q Consensus        98 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVG  164 (193)
                      =+||.-.|...=--|.-..--++++|...+..+|+++             .++++|-|.|||-.-|=
T Consensus         8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~-------------~~~ikY~DEenD~v~i~   61 (87)
T 2bkf_A            8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSIN   61 (87)
T ss_dssp             EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS-------------SEEEEEECTTSCEEEEC
T ss_pred             EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC-------------ceEEEEEcCCCCEEEEe
Confidence            3688888886544564445778999999999999975             45899999999987663

>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=89.34  E-value=1.1  Score=33.90  Aligned_cols=63  Identities=6%  Similarity=0.065  Sum_probs=48.2

Q ss_pred             eeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccCCChHHHhhcc
Q 029427           98 YVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDVPWEMFITSC  175 (193)
Q Consensus        98 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDvPW~mFv~sv  175 (193)
                      =+||.-.|...=--|.-..--++++|...+..+|+++             .+++.|-|.|||-.-|  ..+.+|-+.+
T Consensus        16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~-------------~~~IkY~DEenD~V~i--~Sq~E~eEAl   78 (101)
T 1wj6_A           16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSI--NSQGEYEEAL   78 (101)
T ss_dssp             EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS-------------SBCCEEECTTSCEECC--CSHHHHHHHH
T ss_pred             EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC-------------ceEEEEecCCCCEEEE--ecHHHHHHHH
Confidence            4689999986555565555778999999999999975             3589999999999877  3466665444

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=88.21  E-value=0.47  Score=34.00  Aligned_cols=57  Identities=16%  Similarity=0.330  Sum_probs=41.9

Q ss_pred             cCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC-CChHHHhhccc
Q 029427          114 LNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD-VPWEMFITSCK  176 (193)
Q Consensus       114 L~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~svk  176 (193)
                      ...--+|++|...+.+-|.....     .+ ......+-|+|.|||+...++ .=|+|-+.++|
T Consensus         8 V~~~i~f~~L~~kI~~kl~~~~~-----~~-~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~   65 (77)
T 1pqs_A            8 VEKVWNFDDLIMAINSKISNTHN-----NN-ISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA   65 (77)
T ss_dssp             CTTCCCSHHHHHHHHHHTTTTTS-----SC-SCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHHHHccccc-----cc-ccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence            44556899999999999984210     00 124568999999999987765 58999888764

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=87.17  E-value=0.91  Score=34.74  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=32.8

Q ss_pred             ecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC
Q 029427          113 HLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD  165 (193)
Q Consensus       113 DL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD  165 (193)
                      ||+..-.|.+|+.-..+-|.-.             +-+|-|.|.|||+.-+=|
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~~-------------DIaLNYrD~eGDLIrild   67 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQRE-------------DIALNYRDAEGDLVRLLS   67 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCCS-------------SEEEEEECTTSCEEECCS
T ss_pred             ccccCCCHHHHHHHHHHHhccc-------------ceeeeeecCCCCEEEEcc
Confidence            5778889999999999999842             337999999999976544

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=86.84  E-value=3.2  Score=30.09  Aligned_cols=69  Identities=12%  Similarity=0.133  Sum_probs=53.9

Q ss_pred             eeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEc-CCCCeEEccCCChHHHhhccc
Q 029427           98 YVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYED-KDGDWMLVGDVPWEMFITSCK  176 (193)
Q Consensus        98 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeD-kdGDwMLVGDvPW~mFv~svk  176 (193)
                      =|||+-.   +.-.|....=-+|.+|...|.+-+... ++          +-+|-|.| .+|.|++.+|.-++.-...++
T Consensus         7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~-~~----------~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~   72 (83)
T 1oey_A            7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR-LE----------HTKLSYRPRDSNELVPLSEDSMKDAWGQVK   72 (83)
T ss_dssp             EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC-GG----------GCCEEECCTTCSSCEECCTTTHHHHHTTCB
T ss_pred             EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC-cc----------eeEEEeeCCCCCCeeccChHHHHHHHHhcc
Confidence            4566666   777888888889999999999999874 21          12689999 688899999999998877744


Q ss_pred             --eeEE
Q 029427          177 --RLRV  180 (193)
Q Consensus       177 --RLrI  180 (193)
                        ||++
T Consensus        73 n~~LtL   78 (83)
T 1oey_A           73 NYCLTL   78 (83)
T ss_dssp             TTEEEE
T ss_pred             CCcEEE
Confidence              5654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	97.32
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	96.27
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	89.65
d1wmha_	83	Protein kinase C, iota type {Human (Homo sapiens)	85.57
d1oeyj_	105	Neutrophil cytosol factor 4 (p40phox component of	80.26

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00022  Score=51.00  Aligned_cols=63  Identities=8%  Similarity=0.112  Sum_probs=50.3

Q ss_pred             eeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC-CChHHHhh
Q 029427           98 YVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD-VPWEMFIT  173 (193)
Q Consensus        98 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~  173 (193)
                      =|||+..|..+=-+|-+..-.+|.+|...|+..|++.             ++.+.|.|.|+||.++.- .=.++.+.
T Consensus         6 tvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~-------------~~~lkY~Ddd~e~v~l~~d~dl~E~~~   69 (85)
T d2bkfa1           6 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSINSQGEYEEALK   69 (85)
T ss_dssp             EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS-------------SEEEEEECTTSCEEEECSHHHHHHHHH
T ss_pred             EEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCcc-------------cceEEEEcCCCCEEEEecHHHHHHHHH
Confidence            4899999987666787778899999999999999874             257999999999988753 34444433

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.0023  Score=44.71  Aligned_cols=71  Identities=14%  Similarity=0.090  Sum_probs=50.9

Q ss_pred             CCceeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccC-CChHHHhh
Q 029427           95 SGIYVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGD-VPWEMFIT  173 (193)
Q Consensus        95 ~~~~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGD-vPW~mFv~  173 (193)
                      ...-|||+.++.-+-  +=|..=-+|.+|...+.+.|...             .++|-|+|.||||..+-+ .=+++-++
T Consensus        11 ~~ikVKv~~~~D~~~--~~l~~~it~~dL~~kI~~rf~~~-------------~~~lkY~Dedgd~v~i~sD~Dl~~ai~   75 (85)
T d1ip9a_          11 KTTKIKFYYKDDIFA--LMLKGDTTYKELRSKIAPRIDTD-------------NFKLQTKLFDGSGEEIKTDSQVSNIIQ   75 (85)
T ss_dssp             CCEEEEECBTTCCEE--EEECSCCCHHHHHHHHHHHHTSS-------------CEEEEECCSSSCCSCCCSHHHHHHHHH
T ss_pred             CCEEEEEEECCcEEE--EEeCCCCCHHHHHHHHHHHhCCC-------------ceEEEEEcCCCCEEEEeCHHHHHHHHH
Confidence            346789998888444  44455578999999999999742             368999999999986544 45555555


Q ss_pred             ccceeEE
Q 029427          174 SCKRLRV  180 (193)
Q Consensus       174 svkRLrI  180 (193)
                      ...||.+
T Consensus        76 ~~~kl~v   82 (85)
T d1ip9a_          76 AKLKISV   82 (85)
T ss_dssp             TTCCEEE
T ss_pred             hcCcEEE
Confidence            4445443

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.65  E-value=0.58  Score=32.56  Aligned_cols=67  Identities=16%  Similarity=0.217  Sum_probs=47.2

Q ss_pred             eEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEccCC-ChHHHhhccc
Q 029427           99 VKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLVGDV-PWEMFITSCK  176 (193)
Q Consensus        99 VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLVGDv-PW~mFv~svk  176 (193)
                      ||=..|-.=-=-.+|.....+|++.+.-|++|=.+.           +-++.+.|.|.+||.+-+-.. -+.--+.|++
T Consensus         5 VKSKFdAEfRRFsl~r~~~~~fe~F~~Lle~~H~l~-----------~~~f~i~Y~D~hgDLLPINNDdNf~kA~~sa~   72 (82)
T d1wmhb_           5 VKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-----------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP   72 (82)
T ss_dssp             EEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-----------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred             eecccCceEEEeeeccccccCHHHHHHHHHHHcCCC-----------CCcEEEEEecCCCCcccccCchHHHHHHHhcC
Confidence            343444332222577788899999999999987764           236899999999999988643 4444455666

>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Protein kinase C, iota type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.57  E-value=1.1  Score=31.09  Aligned_cols=53  Identities=21%  Similarity=0.290  Sum_probs=42.8

Q ss_pred             eeEEEEcCccccceeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEE
Q 029427           98 YVKVSMDGAPYLRKIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWML  162 (193)
Q Consensus        98 ~VKV~MdG~pigRKVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwML  162 (193)
                      -||+.-.|..+--.+|.+  -+|++|...+..|.+|..          ..-|++-+.|.|||=--
T Consensus         3 riK~~y~G~i~it~~~~~--it~e~l~~evr~~C~f~~----------~q~fT~KWiDeEGDPCT   55 (83)
T d1wmha_           3 RVKAYYRGDIMITHFEPS--ISFEGLCNEVRDMCSFDN----------EQLFTMKWIDEEGDPCT   55 (83)
T ss_dssp             EEEEEETTEEEEEEECTT--CCHHHHHHHHHHHTTCCT----------TCCCEEEEECTTSCEEE
T ss_pred             EEEEEecCeEEEEecCCC--ccHHHHHHHHHHHhCCCc----------CCcEEEEEEcCCCCcee
Confidence            478889998887777765  589999999999999862          23579999999999543

>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.26  E-value=1.3  Score=32.00  Aligned_cols=40  Identities=20%  Similarity=0.317  Sum_probs=32.8

Q ss_pred             eeecCCCCChHHHHHHHHhHhccccccccccCCCCCCcceeEEEcCCCCeEEc
Q 029427          111 KIHLNIYKDYPELLKALEDMFKFKVGEYSESEGYNGSEFVPTYEDKDGDWMLV  163 (193)
Q Consensus       111 KVDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~s~~~ltYeDkdGDwMLV  163 (193)
                      -=||+.--+|.+|..-..+-|.-.             +-+|-|.|.|||..-+
T Consensus        24 eedl~~~P~ykdLl~lmr~~f~~~-------------dIaLNYrD~eGDLIRl   63 (105)
T d1oeyj_          24 EEDLSSTPLLKDLLELTRREFQRE-------------DIALNYRDAEGDLVRL   63 (105)
T ss_dssp             CSCTTCCCCHHHHHHHHHHHHCCS-------------SEEEEEECTTSCEEEC
T ss_pred             ccccccCccHHHHHHHHHHHhccc-------------eeEeeeecCCCCEEEE
Confidence            347889999999999999999853             2378999999998654