Citrus Sinensis ID: 029429

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MAEEKESTSSSLSQGLTPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQVDTLPVQVDFCT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccEEEEEcccccEEEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEEEccccHHHHHcccccHHcc
Coil and Loop (DISEMBL)
maeekestssslsqgltphdpedvpkspphspnsstrKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISaaispdqntsafkevaiirhprlgeyafGFITSSVVLqvdtlpvqvdfct
Flexible Loop (DISEMBL)
maeekestssslsqgltphdpedvpkspphspnsstRKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQVDTLPVQVDFCT
Low Complexity Region (SEG)
MAEEKESTSSSLSQGLTPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQVDTLPVQVDFCT
Disordered region (IsUnstruct)
**************************************ACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISP*QNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQVDTLPVQVDFC*
Disordered Region (DISOPRED)
*********************************************SWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQIS**************VAIIRHPRLGEYAFGFITSSV*************C*
Disordered Region (DISEMBL)
**************************************ACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQVDTLPVQVDFCT
Disordered Region (DISPRO)
*************************************KACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQV***********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEEKESTSSSLSQGLTPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQVDTLPVQVDFCT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
297852120	261	hypothetical protein ARALYDRAFT_473756 [	0.948	0.701	0.847	1e-87
21592424	261	unknown [Arabidopsis thaliana]	0.948	0.701	0.847	3e-87
18400825	261	like COV 2 protein [Arabidopsis thaliana	0.948	0.701	0.842	7e-87
255566642	264	conserved hypothetical protein [Ricinus	0.948	0.693	0.864	1e-81
356516319	258	PREDICTED: uncharacterized protein LOC10	0.953	0.713	0.774	6e-80
212722772	258	COV1-like protein isoform 1 [Zea mays] g	0.948	0.709	0.762	1e-79
326493320	259	predicted protein [Hordeum vulgare subsp	0.948	0.706	0.767	4e-79
300681489	259	COV1-like protein, expressed [Triticum a	0.948	0.706	0.767	5e-79
242059357	258	hypothetical protein SORBIDRAFT_03g04101	0.948	0.709	0.762	5e-79
115441275	259	Os01g0867900 [Oryza sativa Japonica Grou	0.948	0.706	0.756	5e-79

>gi|297852120|ref|XP_002893941.1| hypothetical protein ARALYDRAFT_473756 [Arabidopsis lyrata subsp. lyrata] gi|297339783|gb|EFH70200.1| hypothetical protein ARALYDRAFT_473756 [Arabidopsis lyrata subsp. lyrata]

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/184 (84%), Positives = 172/184 (93%), Gaps = 1/184 (0%)

Query: 1   MAEEKESTSSSLSQGLTPH-DPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVL 59
           MAE+KE+T+SSLSQGLTPH DPED PKSPP+SPNSSTRKACY VLQSWVSKKFMTG VVL
Sbjct: 1   MAEDKEATTSSLSQGLTPHQDPEDAPKSPPNSPNSSTRKACYGVLQSWVSKKFMTGFVVL 60

Query: 60  FPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVF 119
           FPVAVTFL+TWWFI+FVD FFSPIY  LGV+IFGLGF+TS+LF FFVG+FASSWLG+TVF
Sbjct: 61  FPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGFITSVLFTFFVGIFASSWLGSTVF 120

Query: 120 WLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVV 179
           WLGE FI+R+PF+KHIYSASKQIS AISPDQNT+AFKEVAIIRHPR+GEYAFGFITSSV 
Sbjct: 121 WLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSSVT 180

Query: 180 LQVD 183
           LQ D
Sbjct: 181 LQTD 184

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592424|gb|AAM64375.1| unknown [Arabidopsis thaliana]

 Score =  326 bits (835), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/184 (84%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 1   MAEEKESTSSSLSQGLTPH-DPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVL 59
           MAE KE+T+SSLSQGLTPH DPED PKSPP+SPNSSTRKACY VLQSWVSKKFMTG VVL
Sbjct: 1   MAEGKEATTSSLSQGLTPHQDPEDAPKSPPNSPNSSTRKACYGVLQSWVSKKFMTGFVVL 60

Query: 60  FPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVF 119
           FPVAVTFL+TWWFI+FVD FFSPIY  LGV+IFGLGF+TS+LF FFVG+FASSWLG+TVF
Sbjct: 61  FPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGFITSVLFTFFVGIFASSWLGSTVF 120

Query: 120 WLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVV 179
           WLGE FI+R+PF+KHIYSASKQIS AISPDQNT+AFKEVAIIRHPR+GEYAFGFITSSV 
Sbjct: 121 WLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSSVT 180

Query: 180 LQVD 183
           LQ D
Sbjct: 181 LQTD 184

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400825|ref|NP_564483.1| like COV 2 protein [Arabidopsis thaliana] gi|12321538|gb|AAG50825.1|AC026757_6 unknown protein [Arabidopsis thaliana] gi|51971581|dbj|BAD44455.1| unknown protein [Arabidopsis thaliana] gi|51971717|dbj|BAD44523.1| unknown protein [Arabidopsis thaliana] gi|194579027|gb|ACF75547.1| At1g43130 [Arabidopsis thaliana] gi|332193826|gb|AEE31947.1| like COV 2 protein [Arabidopsis thaliana]

 Score =  325 bits (832), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 155/184 (84%), Positives = 171/184 (92%), Gaps = 1/184 (0%)

Query: 1   MAEEKESTSSSLSQGLTPH-DPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVL 59
           MAE KE+T+SSLSQGLTPH DP+D PKSPP+SPNSSTRKACY VLQSWVSKKFMTG VVL
Sbjct: 1   MAEGKEATTSSLSQGLTPHQDPDDAPKSPPNSPNSSTRKACYGVLQSWVSKKFMTGFVVL 60

Query: 60  FPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVF 119
           FPVAVTFL+TWWFI+FVD FFSPIY  LGV+IFGLGF+TS+LF FFVG+FASSWLG+TVF
Sbjct: 61  FPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGFITSVLFTFFVGIFASSWLGSTVF 120

Query: 120 WLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVV 179
           WLGE FI+R+PF+KHIYSASKQIS AISPDQNT+AFKEVAIIRHPR+GEYAFGFITSSV 
Sbjct: 121 WLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSSVT 180

Query: 180 LQVD 183
           LQ D
Sbjct: 181 LQTD 184

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566642|ref|XP_002524305.1| conserved hypothetical protein [Ricinus communis] gi|223536396|gb|EEF38045.1| conserved hypothetical protein [Ricinus communis]

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 160/185 (86%), Positives = 176/185 (95%), Gaps = 2/185 (1%)

Query: 1   MAEEKESTSSSLSQGLTPHDPE--DVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVV 58
           MA+ K+STSSSLSQGLT  DP+  D+PKSPP SPNSSTRKACYAVLQSWVSKKFMTGCVV
Sbjct: 1   MADNKDSTSSSLSQGLTRRDPDPDDIPKSPPSSPNSSTRKACYAVLQSWVSKKFMTGCVV 60

Query: 59  LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATV 118
           LFPVAVTFLVTWWFI+FVD FFSP+YA+LGV+IFGLGF+TS+LFIFFVGVFASSW+GATV
Sbjct: 61  LFPVAVTFLVTWWFIQFVDGFFSPLYAKLGVDIFGLGFVTSLLFIFFVGVFASSWMGATV 120

Query: 119 FWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV 178
           FW+GEWFIKR+PFMKHIYSASKQISAA+SPDQNT+AFKEVAIIRHPR GEYAFGFITSSV
Sbjct: 121 FWVGEWFIKRMPFMKHIYSASKQISAAVSPDQNTTAFKEVAIIRHPRHGEYAFGFITSSV 180

Query: 179 VLQVD 183
           +LQ D
Sbjct: 181 ILQRD 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516319|ref|XP_003526843.1| PREDICTED: uncharacterized protein LOC100801920 [Glycine max]

 Score =  302 bits (773), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 144/186 (77%), Positives = 164/186 (88%), Gaps = 2/186 (1%)

Query: 1   MAEEKESTSSSLSQG--LTPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVV 58
           MAEEKESTS  LSQG   +  DPED  KSP  SPNSSTR+AC  VLQSWVSKKFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQGDNASRDDPEDPAKSPLSSPNSSTRRACCFVLQSWVSKKFMTGCVV 60

Query: 59  LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATV 118
           LFPVAVTF +TWWFI+FVD FFSPIY+RLG+++FGLGF+TS+ F+F +GVF SSW+GATV
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPIYSRLGIDVFGLGFVTSLAFVFLIGVFVSSWMGATV 120

Query: 119 FWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV 178
           FW+GEWFIKR+P ++HIYSASKQISAAISPDQNT+AFKEVAIIRHPR+GEYAFGFITS+V
Sbjct: 121 FWIGEWFIKRMPLVRHIYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 179 VLQVDT 184
            LQ D 
Sbjct: 181 TLQKDN 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212722772|ref|NP_001131970.1| COV1-like protein isoform 1 [Zea mays] gi|194693066|gb|ACF80617.1| unknown [Zea mays] gi|194693894|gb|ACF81031.1| unknown [Zea mays] gi|195647116|gb|ACG43026.1| COV1-like protein [Zea mays] gi|414879522|tpg|DAA56653.1| TPA: COV1-like protein isoform 1 [Zea mays] gi|414879523|tpg|DAA56654.1| TPA: COV1-like protein isoform 2 [Zea mays] gi|414879524|tpg|DAA56655.1| TPA: COV1-like protein isoform 3 [Zea mays]

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 141/185 (76%), Positives = 165/185 (89%), Gaps = 2/185 (1%)

Query: 1   MAEEKESTSSSLSQGLTPHDPEDVPKSPPH--SPNSSTRKACYAVLQSWVSKKFMTGCVV 58
           MAEEKESTS  LSQ     DPED  KSPP   SP +STRKAC AVLQSWVS+KFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQAAEAVDPEDPAKSPPRPSSPTTSTRKACCAVLQSWVSRKFMTGCVV 60

Query: 59  LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATV 118
           LFPVAVTF +TWWFI+FVD FFSP+YA++G++IFGLGFLTS++FIF VG+F SSW+G+T+
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPLYAKIGIDIFGLGFLTSMVFIFLVGIFVSSWVGSTI 120

Query: 119 FWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV 178
           FW+GEWFIK++PF++HIYSASKQ+S AISPDQNT+AFKEVAIIRHPR+GEYAFGFITS+V
Sbjct: 121 FWVGEWFIKKMPFVRHIYSASKQVSTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSTV 180

Query: 179 VLQVD 183
           VLQ D
Sbjct: 181 VLQTD 185

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326493320|dbj|BAJ85121.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  299 bits (765), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 142/185 (76%), Positives = 163/185 (88%), Gaps = 2/185 (1%)

Query: 1   MAEEKESTSSSLSQGLTPHDPEDVPKSPPH--SPNSSTRKACYAVLQSWVSKKFMTGCVV 58
           MAEEKESTS  LSQ     DPED  KSPP   SP +STRKAC AVLQSWVS+KFMTGCVV
Sbjct: 1   MAEEKESTSVPLSQAAEAVDPEDPAKSPPRPSSPTTSTRKACCAVLQSWVSRKFMTGCVV 60

Query: 59  LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATV 118
           LFPVA TF +TWWF++FVD FFSP+YA++GV+IFGLGFLTS+ FIF VG+F SSW+G+TV
Sbjct: 61  LFPVAFTFFITWWFVQFVDGFFSPLYAKIGVDIFGLGFLTSLAFIFLVGIFVSSWVGSTV 120

Query: 119 FWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV 178
           FW+GEWFIK++PF+KHIYSASKQ+S AISPDQNT+AFKEVAIIRHPR+GEYAFGFITS+V
Sbjct: 121 FWVGEWFIKKMPFVKHIYSASKQVSTAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 179 VLQVD 183
           VLQ D
Sbjct: 181 VLQTD 185

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300681489|emb|CBH32583.1| COV1-like protein, expressed [Triticum aestivum]

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 142/185 (76%), Positives = 162/185 (87%), Gaps = 2/185 (1%)

Query: 1   MAEEKESTSSSLSQGLTPHDPEDVPKSPPH--SPNSSTRKACYAVLQSWVSKKFMTGCVV 58
           MAEEKESTS  LSQ     DPED  KSPP   SP +STRKAC AVLQSWVS+KFMTGCVV
Sbjct: 1   MAEEKESTSVPLSQAAEAVDPEDPAKSPPRPSSPTTSTRKACCAVLQSWVSRKFMTGCVV 60

Query: 59  LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATV 118
           LFPVA TF +TWWF++FVD FFSP+YA+LGV IFGLGFLTS+ FIF VG+F SSW+G+TV
Sbjct: 61  LFPVAFTFFITWWFVQFVDGFFSPLYAKLGVNIFGLGFLTSLAFIFLVGIFVSSWVGSTV 120

Query: 119 FWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV 178
           FW+GEWFIK++PF+KHIYSASKQ+S A+SPDQNT+AFKEVAIIRHPR+GEYAFGFITS+V
Sbjct: 121 FWVGEWFIKKMPFVKHIYSASKQVSTAVSPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 179 VLQVD 183
           VLQ D
Sbjct: 181 VLQTD 185

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242059357|ref|XP_002458824.1| hypothetical protein SORBIDRAFT_03g041010 [Sorghum bicolor] gi|241930799|gb|EES03944.1| hypothetical protein SORBIDRAFT_03g041010 [Sorghum bicolor]

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 141/185 (76%), Positives = 164/185 (88%), Gaps = 2/185 (1%)

Query: 1   MAEEKESTSSSLSQGLTPHDPEDVPKSPPH--SPNSSTRKACYAVLQSWVSKKFMTGCVV 58
           MAEEKESTS  LSQ     DPED  KSPP   SP +STRKAC AVLQSWVS+KFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQAAEAVDPEDPAKSPPRPSSPTTSTRKACCAVLQSWVSRKFMTGCVV 60

Query: 59  LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATV 118
           LFPVAVTF +TWWFI+FVD FFSP+YA+ GV+IFGLGFLTS++FIF VG+F SSW+G+T+
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPLYAKFGVDIFGLGFLTSLVFIFLVGLFVSSWVGSTI 120

Query: 119 FWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV 178
           FW+GEWFIK++PF++H+YSASKQ+S AISPDQNT+AFKEVAIIRHPR+GEYAFGFITS+V
Sbjct: 121 FWVGEWFIKKMPFVRHLYSASKQVSTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSTV 180

Query: 179 VLQVD 183
           VLQ D
Sbjct: 181 VLQTD 185

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441275|ref|NP_001044917.1| Os01g0867900 [Oryza sativa Japonica Group] gi|20160853|dbj|BAB89792.1| membrane protein COV-like [Oryza sativa Japonica Group] gi|113534448|dbj|BAF06831.1| Os01g0867900 [Oryza sativa Japonica Group] gi|125528506|gb|EAY76620.1| hypothetical protein OsI_04571 [Oryza sativa Indica Group] gi|125572770|gb|EAZ14285.1| hypothetical protein OsJ_04209 [Oryza sativa Japonica Group] gi|215692460|dbj|BAG87880.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  298 bits (764), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 140/185 (75%), Positives = 165/185 (89%), Gaps = 2/185 (1%)

Query: 1   MAEEKESTSSSLSQGLTPHDPEDVPKSPPH--SPNSSTRKACYAVLQSWVSKKFMTGCVV 58
           MAE++ESTS  LSQ     DPED  KSPP   SP +STRKAC AVLQSWVS+KFMTGCVV
Sbjct: 1   MAEKEESTSIPLSQAAEAVDPEDPAKSPPRPSSPTTSTRKACCAVLQSWVSRKFMTGCVV 60

Query: 59  LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATV 118
           LFPVAVTF +TWWFI+FVD FFSP+YA+LG++IFGLGFLTS++FIF VG+F SSW+G+T+
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPLYAKLGIDIFGLGFLTSLVFIFLVGIFVSSWVGSTI 120

Query: 119 FWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV 178
           FW+GEWFIK++PF++HIYSASKQ+S AISPDQNT+AFKEVAIIRHPR+GEYAFGFITS+V
Sbjct: 121 FWVGEWFIKKMPFVRHIYSASKQVSTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSTV 180

Query: 179 VLQVD 183
           VLQ D
Sbjct: 181 VLQTD 185

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2018640	261	LCV2 "AT1G43130" [Arabidopsis	0.948	0.701	0.842	2.4e-83
TAIR|locus:2061668	268	COV1 "AT2G20120" [Arabidopsis	0.886	0.638	0.65	6.4e-60
TAIR|locus:2061654	256	LCV1 "AT2G20130" [Arabidopsis	0.886	0.667	0.664	1.7e-59
UNIPROTKB|Q3AEZ4	211	CHY_0429 "Putative uncharacter	0.642	0.587	0.343	6e-16
TIGR_CMR|CHY_0429	211	CHY_0429 "conserved hypothetic	0.642	0.587	0.343	6e-16
UNIPROTKB|Q5LRR3	224	SPO2062 "Uncharacterized prote	0.756	0.651	0.297	3.3e-15
TIGR_CMR|SPO_2062	224	SPO_2062 "conserved hypothetic	0.756	0.651	0.297	3.3e-15
UNIPROTKB|Q0C0Q5	237	HNE_1988 "Putative uncharacter	0.689	0.561	0.293	4.9e-14
UNIPROTKB|Q83BF1	209	CBU_1559 "Hypothetical membran	0.673	0.622	0.291	1.3e-13
TIGR_CMR|CBU_1559	209	CBU_1559 "conserved hypothetic	0.673	0.622	0.291	1.3e-13

TAIR|locus:2018640 LCV2 "AT1G43130" [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 155/184 (84%), Positives = 171/184 (92%)

Query:     1 MAEEKESTSSSLSQGLTPH-DPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVL 59
             MAE KE+T+SSLSQGLTPH DP+D PKSPP+SPNSSTRKACY VLQSWVSKKFMTG VVL
Sbjct:     1 MAEGKEATTSSLSQGLTPHQDPDDAPKSPPNSPNSSTRKACYGVLQSWVSKKFMTGFVVL 60

Query:    60 FPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVF 119
             FPVAVTFL+TWWFI+FVD FFSPIY  LGV+IFGLGF+TS+LF FFVG+FASSWLG+TVF
Sbjct:    61 FPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGFITSVLFTFFVGIFASSWLGSTVF 120

Query:   120 WLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVV 179
             WLGE FI+R+PF+KHIYSASKQIS AISPDQNT+AFKEVAIIRHPR+GEYAFGFITSSV 
Sbjct:   121 WLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSSVT 180

Query:   180 LQVD 183
             LQ D
Sbjct:   181 LQTD 184

GO:0003674 "molecular_function" evidence=ND

GO:0010222 "stem vascular tissue pattern formation" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2061668 COV1 "AT2G20120" [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 117/180 (65%), Positives = 140/180 (77%)

Query:    20 DPEDVPKSPPHSPNS---STRKACYAVL----QSWVSKKFMTGCVVLFPVAVTFLVTWWF 72
             D +D   S P S +S   S+ ++ +  L    + W SKKFMTGCV+L P+A+TF +TWWF
Sbjct:    28 DKDDGSSSKPSSSSSASSSSHQSSHETLSLFIRGWASKKFMTGCVILLPIAITFYITWWF 87

Query:    73 IEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFM 132
             I FVD FFSPIYA+LG+ +FG GFLTSI FIF VGVF SSWLGA+V  LGEWFIKR+PF+
Sbjct:    88 IHFVDGFFSPIYAQLGINVFGFGFLTSIAFIFLVGVFMSSWLGASVLNLGEWFIKRMPFV 147

Query:   133 KHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQVDTLPVQVDFC 192
             +HIY+ASKQIS AISPDQNT AFKEVAIIRHPR+GEYAFGFITS+VVLQ    P + + C
Sbjct:   148 RHIYNASKQISTAISPDQNTQAFKEVAIIRHPRVGEYAFGFITSTVVLQ--NYPTEEELC 205

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009734 "auxin mediated signaling pathway" evidence=IGI

GO:0010222 "stem vascular tissue pattern formation" evidence=IMP

GO:0016021 "integral to membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2061654 LCV1 "AT2G20130" [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 119/179 (66%), Positives = 138/179 (77%)

Query:    20 DPEDVPKSPPHSPNS--STRKACYAVL----QSWVSKKFMTGCVVLFPVAVTFLVTWWFI 73
             D +D   S P S +S  S+ ++ +  L    + W SKKFMTGCV+L P+AVTF  TWWFI
Sbjct:    19 DKDDGSSSKPSSSSSASSSHQSGHETLSLFIRGWASKKFMTGCVILLPIAVTFYTTWWFI 78

Query:    74 EFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMK 133
              FVD FFSPIYA LG+ IFG GFLTSI FIF VGVF SSWLGA+V  LGEWFIKR+PF++
Sbjct:    79 HFVDGFFSPIYALLGINIFGFGFLTSIAFIFLVGVFMSSWLGASVLNLGEWFIKRMPFVR 138

Query:   134 HIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQVDTLPVQVDFC 192
             HIY+ASKQIS AISPDQNT AFKEVAIIRHPR+GEYAFGFITS+VVLQ    P + + C
Sbjct:   139 HIYNASKQISTAISPDQNTQAFKEVAIIRHPRVGEYAFGFITSTVVLQ--NYPTEEELC 195

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q3AEZ4 CHY_0429 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 44/128 (34%), Positives = 72/128 (56%)

Query:    52 FMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARL-GVEIFGLGFLTSILFIFFVGVFA 110
             F+TG  V+ P A+T  + +    F D      +A++ G++I GLG LT  L +  VG+ A
Sbjct:    18 FLTGLAVITPAAITIYILFALFSFFDRPLRGFFAQIFGIDIPGLGVLTVALLVPIVGMLA 77

Query:   111 SSWLGATVFWLGEWFIKRLPFMKHIYSASKQ-ISAAISPDQNTSAFKEVAIIRHPRLGEY 169
             ++++G  +    E    ++P  + +Y  SKQ I   + P+++  AFK V + R+P+ G Y
Sbjct:    78 TNFIGRKILKKFEQLFIKIPVTRSLYKTSKQLIETFLHPERD--AFKSVVLARYPKDGSY 135

Query:   170 AFGFITSS 177
             A GFIT S
Sbjct:   136 ALGFITGS 143

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0429 CHY_0429 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 44/128 (34%), Positives = 72/128 (56%)

Query:    52 FMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARL-GVEIFGLGFLTSILFIFFVGVFA 110
             F+TG  V+ P A+T  + +    F D      +A++ G++I GLG LT  L +  VG+ A
Sbjct:    18 FLTGLAVITPAAITIYILFALFSFFDRPLRGFFAQIFGIDIPGLGVLTVALLVPIVGMLA 77

Query:   111 SSWLGATVFWLGEWFIKRLPFMKHIYSASKQ-ISAAISPDQNTSAFKEVAIIRHPRLGEY 169
             ++++G  +    E    ++P  + +Y  SKQ I   + P+++  AFK V + R+P+ G Y
Sbjct:    78 TNFIGRKILKKFEQLFIKIPVTRSLYKTSKQLIETFLHPERD--AFKSVVLARYPKDGSY 135

Query:   170 AFGFITSS 177
             A GFIT S
Sbjct:   136 ALGFITGS 143

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LRR3 SPO2062 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 50/168 (29%), Positives = 88/168 (52%)

Query:    17 TPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFV 76
             TP D E     PPH      R+  +A L++     F+TG VV+ PV +T  + W  + +V
Sbjct:     3 TPFDEE-----PPHV---KPRR--FAGLRA----SFLTGIVVIAPVGLTIWLFWSVVGWV 48

Query:    77 DSFFSPIYAR-------LGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRL 129
             DSF  P+          +G+ + G+G +  ++F   VG  A   +G ++    E  + R+
Sbjct:    49 DSFVLPLVPHQFRPEQYIGINLRGVGVIFLLVFTIVVGWIAKGIIGRSLIQYAEGVVDRM 108

Query:   130 PFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSS 177
             P ++ +YS  KQIS  +   Q   +F++  +I++PR G +A GF++++
Sbjct:   109 PVVRSVYSGIKQISETVFA-QTERSFEQACLIQYPRRGIWAIGFVSTT 155

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2062 SPO_2062 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 50/168 (29%), Positives = 88/168 (52%)

Query:    17 TPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFV 76
             TP D E     PPH      R+  +A L++     F+TG VV+ PV +T  + W  + +V
Sbjct:     3 TPFDEE-----PPHV---KPRR--FAGLRA----SFLTGIVVIAPVGLTIWLFWSVVGWV 48

Query:    77 DSFFSPIYAR-------LGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRL 129
             DSF  P+          +G+ + G+G +  ++F   VG  A   +G ++    E  + R+
Sbjct:    49 DSFVLPLVPHQFRPEQYIGINLRGVGVIFLLVFTIVVGWIAKGIIGRSLIQYAEGVVDRM 108

Query:   130 PFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSS 177
             P ++ +YS  KQIS  +   Q   +F++  +I++PR G +A GF++++
Sbjct:   109 PVVRSVYSGIKQISETVFA-QTERSFEQACLIQYPRRGIWAIGFVSTT 155

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0C0Q5 HNE_1988 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 42/143 (29%), Positives = 74/143 (51%)

Query:    44 LQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYA-RLGVEIF------GLGF 96
             L +W+  +F+ G ++  P+  TF++  + I  +DS   P+    L  E +      G G 
Sbjct:    22 LLAWLRARFVAGMLIALPIVATFVILEFLINLIDSRVVPLLPPSLRPETYLDYAVPGFGL 81

Query:    97 LTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSA-F 155
             +  ILF+  VG  A+++LG     L +  + R+P ++ +YS  KQI        NT+  +
Sbjct:    82 IILILFLTLVGAVATNFLGKFFVDLTDRVLTRVPVVRSVYSVFKQIRDVFQ--NNTAGQY 139

Query:   156 KEVAIIRHPRLGEYAFGFITSSV 178
             KEVA++ +PR G +  GF+   +
Sbjct:   140 KEVAMVEYPREGSWVIGFVAGPI 162

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83BF1 CBU_1559 "Hypothetical membrane spanning protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 40/137 (29%), Positives = 77/137 (56%)

Query:    47 WVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFS--PIYAR----LGVEIFGLGFLTSI 100
             ++ +  + G +V  P+ VTF+V  + ++ +D      P + R     G +I GLG + +I
Sbjct:    10 FIRRYLIAGLLVWLPIWVTFIVIRFLVDLLDGTLKLLPYHYRPEQLFGHKIPGLGLVFTI 69

Query:   101 LFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAI 160
             + IF  G+  ++++G  +    E  + R+P ++ IY+A KQ++ A    Q  S F++V +
Sbjct:    70 IIIFLTGLLVTNFVGRYLIGWWERILARIPLVRSIYTAVKQVTHAFVQPQGQS-FRKVVL 128

Query:   161 IRHPRLGEYAFGFITSS 177
             I +PR G ++  F+TS+
Sbjct:   129 IEYPRKGLWSIAFVTSN 145

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1559 CBU_1559 "conserved hypothetical protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 40/137 (29%), Positives = 77/137 (56%)

Query:    47 WVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFS--PIYAR----LGVEIFGLGFLTSI 100
             ++ +  + G +V  P+ VTF+V  + ++ +D      P + R     G +I GLG + +I
Sbjct:    10 FIRRYLIAGLLVWLPIWVTFIVIRFLVDLLDGTLKLLPYHYRPEQLFGHKIPGLGLVFTI 69

Query:   101 LFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAI 160
             + IF  G+  ++++G  +    E  + R+P ++ IY+A KQ++ A    Q  S F++V +
Sbjct:    70 IIIFLTGLLVTNFVGRYLIGWWERILARIPLVRSIYTAVKQVTHAFVQPQGQS-FRKVVL 128

Query:   161 IRHPRLGEYAFGFITSS 177
             I +PR G ++  F+TS+
Sbjct:   129 IEYPRKGLWSIAFVTSN 145

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
pfam04367	108	pfam04367, DUF502, Protein of unknown function (DU	6e-23
COG2928	222	COG2928, COG2928, Uncharacterized conserved protei	8e-22

>gnl|CDD|218047 pfam04367, DUF502, Protein of unknown function (DUF502)

 Score = 87.9 bits (219), Expect = 6e-23
 Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 96  FLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAF 155
            + ++L IF VG+ A +++G  +  LGE  + R+P ++ IYS+ KQ+   +  D+  S F
Sbjct: 1   LILTLLLIFLVGLLARNFIGRWLLSLGERLLNRIPLVRSIYSSVKQLVETLLGDKKKS-F 59

Query: 156 KEVAIIRHPRLGEYAFGFITSSVVLQVDT 184
           ++V ++ +PR G +A GF+T     ++  
Sbjct: 60  RKVVLVEYPRPGLWAIGFVTGEDGGELPE 88

Predicted to be an integral membrane protein. Length = 108

>gnl|CDD|225480 COG2928, COG2928, Uncharacterized conserved protein [Function unknown]

 Score = 88.1 bits (219), Expect = 8e-22
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)

Query: 50  KKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSP-------IYARLGVEIFGLGFLTSILF 102
           K F+TG +VL P+A+T  V  W    +D F  P               I GLG + +I+ 
Sbjct: 8   KYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIIL 67

Query: 103 IFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIR 162
           IF +G  A + +G ++  LG+  ++R+P +K IY ++KQ+   +  DQ + +FK+V ++ 
Sbjct: 68  IFLLGFLARNMIGRSLLSLGDSLLRRIPLVKSIYKSAKQVVETLLSDQ-SGSFKQVVLVE 126

Query: 163 HPRLGEYAFGFITSSV 178
            PR G +A  F+T   
Sbjct: 127 FPRRGIWAIAFVTGEK 142

Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
COG2928	222	Uncharacterized conserved protein [Function unknow	100.0
PF04367	108	DUF502: Protein of unknown function (DUF502); Inte	99.93
PRK15350	88	type III secretion system protein SsaS; Provisiona	93.17
PRK05700	89	fliQ flagellar biosynthesis protein FliQ; Validate	92.69
TIGR01402	88	fliQ flagellar biosynthetic protein FliQ. This mod	92.35
PRK06010	88	fliQ flagellar biosynthesis protein FliQ; Reviewed	91.71
PRK12781	88	fliQ flagellar biosynthesis protein FliQ; Reviewed	90.38
TIGR01403	81	fliQ_rel_III type III secretion protein, HrpO fami	89.43
TIGR02120	399	GspF general secretion pathway protein F. This mem	87.89
PRK09824	627	PTS system beta-glucoside-specific transporter sub	87.82
PRK12772	609	bifunctional flagellar biosynthesis protein FliR/F	87.28
COG1987	89	FliQ Flagellar biosynthesis pathway, component Fli	87.27
PF01311	249	Bac_export_1: Bacterial export proteins, family 1;	86.65
PRK15333	86	type III secretion system protein SpaQ; Provisiona	86.2
PRK09796	472	PTS system cellobiose/arbutin/salicin-specific tra	84.0
PRK11007	473	PTS system trehalose(maltose)-specific transporter	83.86
PRK10573	399	type IV pilin biogenesis protein; Provisional	83.58
PRK09586	476	murP PTS system N-acetylmuramic acid transporter s	82.78
TIGR01992	462	PTS-IIBC-Tre PTS system, trehalose-specific IIBC c	81.6
COG1684	258	FliR Flagellar biosynthesis pathway, component Fli	81.52
TIGR01996	461	PTS-II-BC-sucr PTS system, sucrose-specific IIBC c	81.19

>COG2928 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.1e-37  Score=263.43  Aligned_cols=147  Identities=31%  Similarity=0.628  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------hhhhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 029429           44 LQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYA-------RLGVEIFGLGFLTSILFIFFVGVFASSWLGA  116 (193)
Q Consensus        44 ~~~~i~~~fl~GLlvlLPi~iTi~Il~~l~~~v~~~~~pl~~-------~l~~~~pglgl~~~l~~i~~iG~la~~~ig~  116 (193)
                      .++++|++|++||++++|+++|+|+++|+++++|+++.|.+.       +++.+++++|+++.+++++++|+++++.+||
T Consensus         2 ~~~~lk~~fltGLlvllPlaiT~~vv~~i~~~l~~~~~~~lp~~~~~~~~~~~~i~~lg~il~iili~l~G~l~~~~ig~   81 (222)
T COG2928           2 GAKRLKKYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIILIFLLGFLARNMIGR   81 (222)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhchhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            356789999999999999999999999999999999998553       2345688999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHHHhCCCCCCccccceEEEEcCCCCeeEEEEEeccc--cccCCCCceeeee
Q 029429          117 TVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV--VLQVDTLPVQVDF  191 (193)
Q Consensus       117 ~ll~~~e~ll~rIP~V~sIYssiKqi~~~f~g~~~~~~f~~VVLVe~P~~g~~~iGFvT~~~--~~~~~~g~~~~~~  191 (193)
                      ++++++|++++|||++|+||+++||+++++.++++ ++||+||+||||++|+|++||+|++.  +.+...|++.+.+
T Consensus        82 ~l~~~~d~~L~RiPlv~~IY~s~kqi~etll~~~~-~sfk~vvlVefP~~G~~~i~fvtg~~~~e~~~~~~~~~v~V  157 (222)
T COG2928          82 SLLSLGDSLLRRIPLVKSIYKSAKQVVETLLSDQS-GSFKQVVLVEFPRRGIWAIAFVTGEKAGELKEKEGRPMVAV  157 (222)
T ss_pred             HHHHHHHHHHccCccHHHHHHHHHHHHHHHHhcCC-ccceeeEEEECCCCCcEEEEEeccCCCcchhcccCCceEEE
Confidence            99999999999999999999999999999998864 58999999999999999999999996  5555666665543

>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins

Probab=99.93  E-value=2.5e-25  Score=170.12  Aligned_cols=92  Identities=34%  Similarity=0.595  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhCCCCCCccccceEEEEcCCCCeeEEEEEec
Q 029429           97 LTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITS  176 (193)
Q Consensus        97 ~~~l~~i~~iG~la~~~ig~~ll~~~e~ll~rIP~V~sIYssiKqi~~~f~g~~~~~~f~~VVLVe~P~~g~~~iGFvT~  176 (193)
                      ++++++|+++|+++++++|+++++++|+++.|||+||+||+++||++++|+++++ ++|++||+||||++|+|++||+|+
T Consensus         2 l~~l~~i~~iG~l~~~~~g~~l~~~~e~ll~riP~v~~iY~~~k~~~~~~~~~~~-~~f~~vVlV~~p~~g~~~igFvT~   80 (108)
T PF04367_consen    2 LILLLLIFLIGLLARNYFGKWLLNWLERLLQRIPLVKSIYSSIKQLVESFSGDKK-KSFKKVVLVEFPRPGMYVIGFVTG   80 (108)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhhccc-ccCCeEEEEEecCCCcEEEEEEec
Confidence            5678899999999999999999999999999999999999999999999998864 459999999999999999999999


Q ss_pred             cc--cccCCCCceee
Q 029429          177 SV--VLQVDTLPVQV  189 (193)
Q Consensus       177 ~~--~~~~~~g~~~~  189 (193)
                      +.  ..+...+++.+
T Consensus        81 ~~~~~~~~~~~~~~v   95 (108)
T PF04367_consen   81 EDPGELPGKTGEEMV   95 (108)
T ss_pred             cCcchhhccCCCCEE
Confidence            97  33444444443

>PRK15350 type III secretion system protein SsaS; Provisional

Probab=93.17  E-value=2.7  Score=31.36  Aligned_cols=80  Identities=15%  Similarity=0.198  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 029429           45 QSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEW  124 (193)
Q Consensus        45 ~~~i~~~fl~GLlvlLPi~iTi~Il~~l~~~v~~~~~pl~~~l~~~~pglgl~~~l~~i~~iG~la~~~ig~~ll~~~e~  124 (193)
                      ....++.+...+.+.+|+.+.-.++..+++.+....+-       .-.-++++-=++.++++=++...|.++.+.++.++
T Consensus         7 ~~l~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~TQI-------QEqTLsFvPKliav~~~l~~~gpWm~~~l~~ft~~   79 (88)
T PRK15350          7 TQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQI-------QDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQ   79 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567889999999999999998888888777665421       11123333333333333344455666778889999


Q ss_pred             Hhhhhhh
Q 029429          125 FIKRLPF  131 (193)
Q Consensus       125 ll~rIP~  131 (193)
                      ++.+||-
T Consensus        80 if~~i~~   86 (88)
T PRK15350         80 IMLRIGE   86 (88)
T ss_pred             HHHhhhh
Confidence            9999884

>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated

Probab=92.69  E-value=3.2  Score=30.97  Aligned_cols=81  Identities=14%  Similarity=0.235  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 029429           45 QSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEW  124 (193)
Q Consensus        45 ~~~i~~~fl~GLlvlLPi~iTi~Il~~l~~~v~~~~~pl~~~l~~~~pglgl~~~l~~i~~iG~la~~~ig~~ll~~~e~  124 (193)
                      ....++.+...+.+.+|+.+.-.++..+++.+....+-       .-.-++++-=++.++++=++...|.++.+.++.++
T Consensus         7 ~~l~~~al~~~l~ls~P~l~~alvVGlvIsi~QA~TQI-------qEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~   79 (89)
T PRK05700          7 MDLFREAMKVALMLAAPLLLVALVVGLVVSIFQAATQI-------NEQTLSFIPKILAVLLTLIIAGPWMLNTLLDYTRT   79 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888999999999999998888888777665421       11223333333334444445556777888899999


Q ss_pred             Hhhhhhhh
Q 029429          125 FIKRLPFM  132 (193)
Q Consensus       125 ll~rIP~V  132 (193)
                      ++++||-+
T Consensus        80 if~~i~~~   87 (89)
T PRK05700         80 LFSNIPTL   87 (89)
T ss_pred             HHHHHHhh
Confidence            99999963

>TIGR01402 fliQ flagellar biosynthetic protein FliQ

Probab=92.35  E-value=3.6  Score=30.69  Aligned_cols=81  Identities=15%  Similarity=0.184  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 029429           45 QSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEW  124 (193)
Q Consensus        45 ~~~i~~~fl~GLlvlLPi~iTi~Il~~l~~~v~~~~~pl~~~l~~~~pglgl~~~l~~i~~iG~la~~~ig~~ll~~~e~  124 (193)
                      ..-.++.+...+.+.+|+.+.-.++..+++.+....+-       .-.-++++-=++.++++-++.-.|.++.+.++.++
T Consensus         7 ~~l~~~al~~~l~~s~P~l~~alvVGlvIsi~QA~TQI-------qEqTLsFvPKliav~~~l~~~gpWm~~~l~~f~~~   79 (88)
T TIGR01402         7 LDLGREAIWLTLLLSAPVLLVALVVGLVISIFQAATQI-------QEQTLSFIPKIIAILLALALLGPWMLTKLLDFTRE   79 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888999999999999988888888777665421       11223333333334444445556677788899999


Q ss_pred             Hhhhhhhh
Q 029429          125 FIKRLPFM  132 (193)
Q Consensus       125 ll~rIP~V  132 (193)
                      ++++||-+
T Consensus        80 ~f~~i~~~   87 (88)
T TIGR01402        80 IFQRIPQG   87 (88)
T ss_pred             HHHHhhhh
Confidence            99999863

This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems.

>PRK06010 fliQ flagellar biosynthesis protein FliQ; Reviewed

Probab=91.71  E-value=4.4  Score=30.27  Aligned_cols=80  Identities=18%  Similarity=0.176  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 029429           45 QSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEW  124 (193)
Q Consensus        45 ~~~i~~~fl~GLlvlLPi~iTi~Il~~l~~~v~~~~~pl~~~l~~~~pglgl~~~l~~i~~iG~la~~~ig~~ll~~~e~  124 (193)
                      ....++.+...+.+.+|+.+.-.++..+++.+....+-       .-.-+.++-=++.++++=++...|.++.+.++.++
T Consensus         7 ~~l~~~al~~~l~~s~P~L~~alvVGliIsi~QA~TQI-------qEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~   79 (88)
T PRK06010          7 LDIVRDAIWTVLVASGPAVLAAMVVGVAIALFQALTQI-------QEMTLTFVPKIVAIFVTLLLTLPFMGAQISAFTLL   79 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999998888888777665421       11123333323333333334445666778889999


Q ss_pred             Hhhhhhh
Q 029429          125 FIKRLPF  131 (193)
Q Consensus       125 ll~rIP~  131 (193)
                      ++.+||-
T Consensus        80 if~~i~~   86 (88)
T PRK06010         80 IYSRIAG   86 (88)
T ss_pred             HHHhhcc
Confidence            9999884

>PRK12781 fliQ flagellar biosynthesis protein FliQ; Reviewed

Probab=90.38  E-value=6  Score=29.52  Aligned_cols=80  Identities=19%  Similarity=0.214  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 029429           45 QSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEW  124 (193)
Q Consensus        45 ~~~i~~~fl~GLlvlLPi~iTi~Il~~l~~~v~~~~~pl~~~l~~~~pglgl~~~l~~i~~iG~la~~~ig~~ll~~~e~  124 (193)
                      ....++.+...+.+-+|..+.-.++.-+++.+....+-       .-.-++++-=++.++++=++...+.++.+.++.++
T Consensus         7 i~~~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~TQI-------QEqTLsFvPKliav~~~l~~~~~wm~~~l~~ft~~   79 (88)
T PRK12781          7 LELVRAAIWTIIVASGPAVGAAMLVGIAIALLQALTQI-------QEVTLTFVPKIVVILIVMAVTGSFVGAQIYAFTEM   79 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567888999999999999988888877776655411       11123333333333344444555667778889999


Q ss_pred             Hhhhhhh
Q 029429          125 FIKRLPF  131 (193)
Q Consensus       125 ll~rIP~  131 (193)
                      ++.+||-
T Consensus        80 if~~i~~   86 (88)
T PRK12781         80 VYGRIES   86 (88)
T ss_pred             HHHhhcc
Confidence            9999883

>TIGR01403 fliQ_rel_III type III secretion protein, HrpO family

Probab=89.43  E-value=6.8  Score=28.77  Aligned_cols=78  Identities=12%  Similarity=0.318  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 029429           46 SWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWF  125 (193)
Q Consensus        46 ~~i~~~fl~GLlvlLPi~iTi~Il~~l~~~v~~~~~pl~~~l~~~~pglgl~~~l~~i~~iG~la~~~ig~~ll~~~e~l  125 (193)
                      ...++.+...+.+.+|..+.-.++..+++.+....+-       .-+-+.++-=++.++++=++...+..+.+.++.+++
T Consensus         4 ~~~~~al~~~l~~s~P~L~~alvVGLvIsi~QA~TQI-------qEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i   76 (81)
T TIGR01403         4 QLTNQALLLVLILSLPPVLVAAIVGLLVSLLQALTQL-------QDQTLPFAIKLIAVFITLMLTAGWLGAEILNFANQI   76 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457888899999999999998888888777665421       111122222222222222333445566778899999


Q ss_pred             hhhhh
Q 029429          126 IKRLP  130 (193)
Q Consensus       126 l~rIP  130 (193)
                      +++||
T Consensus        77 f~~i~   81 (81)
T TIGR01403        77 FTMIP   81 (81)
T ss_pred             HhhCC
Confidence            98887

This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FliQ. This model may not identify all type III secretion system FliQ homologs.

>TIGR02120 GspF general secretion pathway protein F

Probab=87.89  E-value=12  Score=33.91  Aligned_cols=21  Identities=14%  Similarity=0.126  Sum_probs=17.7

Q ss_pred             HHHHHHHHhhhhhhhhHHHHH
Q 029429          118 VFWLGEWFIKRLPFMKHIYSA  138 (193)
Q Consensus       118 ll~~~e~ll~rIP~V~sIYss  138 (193)
                      .-...|+++.|||+++++|..
T Consensus       243 ~r~~~~~~l~kiP~~g~~~~~  263 (399)
T TIGR02120       243 FRLRFDRRLLRLPVIGRLVRG  263 (399)
T ss_pred             HHHHHHHHHhcccchHHHHHH
Confidence            446789999999999999864

This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=87.82  E-value=6.7  Score=38.68  Aligned_cols=85  Identities=13%  Similarity=0.254  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHhhhhhhh-hHHH
Q 029429           59 LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSI-LFIFFVGVFASSWLGATVFWLGEWFIKRLPFM-KHIY  136 (193)
Q Consensus        59 lLPi~iTi~Il~~l~~~v~~~~~pl~~~l~~~~pglgl~~~l-~~i~~iG~la~~~ig~~ll~~~e~ll~rIP~V-~sIY  136 (193)
                      ++|+.+++|+..|+-.|+++++...++.+  -.|.+.+++++ +.++++|=+.. ++|..+-..++++.+.-|.+ +-|+
T Consensus       219 ViPiil~v~~~s~iEk~l~K~iP~~l~~i--~~P~ltlli~~pl~l~viGPig~-~i~~~l~~~i~~l~~~~~~i~g~i~  295 (627)
T PRK09824        219 VIPIIFSAWLCSILERRLNAWLPSAIKNF--FTPLLCLMVIVPLTFLLIGPLAT-WLSELLAAGYQWLYQAVPAFAGAVM  295 (627)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHhhchHHHHHHH
Confidence            89999999999999999999986665442  24555555543 44555665553 46666666777777766644 3467


Q ss_pred             HHHHHHHHHh
Q 029429          137 SASKQISAAI  146 (193)
Q Consensus       137 ssiKqi~~~f  146 (193)
                      ..+-+++=.+
T Consensus       296 g~~~~~lV~~  305 (627)
T PRK09824        296 GAFWQVFVIF  305 (627)
T ss_pred             HHHHHHHHHh
Confidence            7776665544

>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional

Probab=87.28  E-value=12  Score=36.65  Aligned_cols=41  Identities=12%  Similarity=0.207  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029429           40 CYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFF   80 (193)
Q Consensus        40 ~~~~~~~~i~~~fl~GLlvlLPi~iTi~Il~~l~~~v~~~~   80 (193)
                      ......+.+.+.|..|+...+|+++..+++...+++++...
T Consensus       164 ~~~~~~~~~~~~F~~al~lAaP~i~~lll~~~~lGllsR~a  204 (609)
T PRK12772        164 SIMHVINVFIQYFYIGIKIAIPIVLIILITDLTLGLISRTV  204 (609)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34566778899999999999999999999999999998876

>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=87.27  E-value=11  Score=28.39  Aligned_cols=80  Identities=15%  Similarity=0.214  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 029429           46 SWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWF  125 (193)
Q Consensus        46 ~~i~~~fl~GLlvlLPi~iTi~Il~~l~~~v~~~~~pl~~~l~~~~pglgl~~~l~~i~~iG~la~~~ig~~ll~~~e~l  125 (193)
                      +-.++.+-.+|...+|..+.-.++.-++..+.....-       .-.-+.++==++.++++-.++..|.++.+.++...+
T Consensus         8 ~i~~~ai~~~L~l~~P~ll~alvvGLvIsifQA~TQI-------qEqTLsFiPKIiai~~~l~~~gpWm~~~l~dft~~i   80 (89)
T COG1987           8 DIGQEAIWLVLMLSAPVLLVALVVGLVISIFQAATQI-------QEQTLSFIPKIIAVFLVLILLGPWMLNQLLDFTVTI   80 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4456778889999999998888877777666554311       111233333344455555566667788899999999


Q ss_pred             hhhhhhh
Q 029429          126 IKRLPFM  132 (193)
Q Consensus       126 l~rIP~V  132 (193)
                      ++|||..
T Consensus        81 f~~i~~~   87 (89)
T COG1987          81 FSNIPQI   87 (89)
T ss_pred             HHHHHhh
Confidence            9999963

>PF01311 Bac_export_1: Bacterial export proteins, family 1; InterPro: IPR002010 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []

Probab=86.65  E-value=20  Score=30.93  Aligned_cols=43  Identities=9%  Similarity=0.115  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029429           38 KACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFF   80 (193)
Q Consensus        38 ~~~~~~~~~~i~~~fl~GLlvlLPi~iTi~Il~~l~~~v~~~~   80 (193)
                      ++......+.+.+.|..|+..-+|+.+..+++.-.++.+++..
T Consensus       163 ~~~~~~~~~~~~~~f~~al~lAaP~i~~lll~~l~lG~l~R~~  205 (249)
T PF01311_consen  163 EEALQFIIKLFGQMFSLALQLAAPVIAALLLVDLALGLLSRAA  205 (249)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5677778888899999999999999999999999999998876

There have been four secretion systems described in animal enteropathogens such as Salmonella and Yersinia, with further sequence similarities in plant pathogens like Ralstonia and Erwinia []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. The protein subunits of the system are very similar to those of bacterial flagellar biosynthesis []. However, while the latter forms a ring structure to allow secretion of flagellin and is an integral part of the flagellum itself [], type III subunits in the outer membrane translocate secreted proteins through a channel-like structure. It is believed that the family of type III inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "R" here for nomenclature purposes, includes the Salmonella and Shigella SpaR, the Yersinia YscT, Rhizobium Y4YN, and the Erwinia HrcT genes []. The flagellar protein FliR also shares similarity, probably due to evolution of the type III secretion system from the flagellar biosynthetic pathway. ; GO: 0006605 protein targeting, 0016020 membrane

>PRK15333 type III secretion system protein SpaQ; Provisional

Probab=86.20  E-value=12  Score=27.88  Aligned_cols=79  Identities=11%  Similarity=0.028  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 029429           46 SWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWF  125 (193)
Q Consensus        46 ~~i~~~fl~GLlvlLPi~iTi~Il~~l~~~v~~~~~pl~~~l~~~~pglgl~~~l~~i~~iG~la~~~ig~~ll~~~e~l  125 (193)
                      ...++.+...+.+.+|+.+.-.++.-+++.+....+-       .-.-+.++-=++.+++.=++...+.++.+.++.+++
T Consensus         6 ~~~~~al~~~l~ls~P~L~valvVGlvIsi~QA~TQI-------QEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i   78 (86)
T PRK15333          6 FAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQL-------QEQTLPFGIKLLGVCLCLFLLSGWYGEVLLSYGRQV   78 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457888899999999999988888887776655421       111233333333333333445556777788899999


Q ss_pred             hhhhhh
Q 029429          126 IKRLPF  131 (193)
Q Consensus       126 l~rIP~  131 (193)
                      +..+|-
T Consensus        79 f~~~~~   84 (86)
T PRK15333         79 IFLALA   84 (86)
T ss_pred             HHhhhc
Confidence            988874

>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional

Probab=84.00  E-value=14  Score=35.13  Aligned_cols=87  Identities=17%  Similarity=0.162  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHhhhhh-hhhHH
Q 029429           58 VLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTS-ILFIFFVGVFASSWLGATVFWLGEWFIKRLP-FMKHI  135 (193)
Q Consensus        58 vlLPi~iTi~Il~~l~~~v~~~~~pl~~~l~~~~pglgl~~~-l~~i~~iG~la~~~ig~~ll~~~e~ll~rIP-~V~sI  135 (193)
                      .++|+.+++|+..++-.+++++....++.+  -.|.+.++++ .+.++++|=+.. ++|..+-..++++.+.-| +..-|
T Consensus       220 sViPiil~v~~~s~vek~~~K~~P~~l~~i--~~P~ltlli~~pl~l~viGPig~-~i~~~i~~~i~~l~~~~~~i~g~i  296 (472)
T PRK09796        220 TVIPALVMTWCLSYIERWVDRITPAVTKNF--LKPMLIVLIAAPLAILLIGPIGI-WIGSAISALVYTIHGYLGWLSVAI  296 (472)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHhcchHHHHHH
Confidence            479999999999999999999886655432  1344444432 233444444432 455555556666665554 55677


Q ss_pred             HHHHHHHHHHhC
Q 029429          136 YSASKQISAAIS  147 (193)
Q Consensus       136 YssiKqi~~~f~  147 (193)
                      +..+-+.+=.+.
T Consensus       297 ~g~~~~~lV~~G  308 (472)
T PRK09796        297 MGALWPLLVMTG  308 (472)
T ss_pred             HHHHHHHHHHhc
Confidence            777777665443

>PRK11007 PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional

Probab=83.86  E-value=14  Score=35.31  Aligned_cols=86  Identities=9%  Similarity=0.125  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHhh-hh-hhhhH
Q 029429           58 VLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILF-IFFVGVFASSWLGATVFWLGEWFIK-RL-PFMKH  134 (193)
Q Consensus        58 vlLPi~iTi~Il~~l~~~v~~~~~pl~~~l~~~~pglgl~~~l~~-i~~iG~la~~~ig~~ll~~~e~ll~-rI-P~V~s  134 (193)
                      .++|+.++.|+..|+-.|++++....++.  .-.|.+.++++..+ ++++|=+.. +++..+-+.++++.. .. ++-.-
T Consensus       231 sViP~Il~v~~~s~iek~l~K~~P~~l~~--i~~Plltlli~~~l~l~viGPig~-~i~~~i~~~i~~L~~~~~~~ig~~  307 (473)
T PRK11007        231 QVIPALLAGLALGFIETRLKRIVPDYLYL--VVVPVCSLILAVFLAHALIGPFGR-MIGDGVAFAVKALMTGSFAPIGAA  307 (473)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchHHHHHH
Confidence            58999999999999999999997555542  22455666554443 346665543 466666667777762 33 45666


Q ss_pred             HHHHHHHHHHHh
Q 029429          135 IYSASKQISAAI  146 (193)
Q Consensus       135 IYssiKqi~~~f  146 (193)
                      ++..+-+.+=.+
T Consensus       308 i~g~~~~~lV~~  319 (473)
T PRK11007        308 LFGFLYAPLVIT  319 (473)
T ss_pred             HHHHHHHHHHHh
Confidence            777777765544

>PRK10573 type IV pilin biogenesis protein; Provisional

Probab=83.58  E-value=14  Score=33.47  Aligned_cols=18  Identities=17%  Similarity=0.344  Sum_probs=15.3

Q ss_pred             HHHHHHhhhhhhhhHHHH
Q 029429          120 WLGEWFIKRLPFMKHIYS  137 (193)
Q Consensus       120 ~~~e~ll~rIP~V~sIYs  137 (193)
                      .+.|+++.|+|+++.+|.
T Consensus       244 ~~~~~~l~~iP~~g~~~~  261 (399)
T PRK10573        244 IREQRLLLRLPLVGSLIR  261 (399)
T ss_pred             HHHHHHHhcCCeeccccc
Confidence            467999999999998775

>PRK09586 murP PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed

Probab=82.78  E-value=17  Score=34.69  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhhhhHHH
Q 029429           58 VLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTS-ILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIY  136 (193)
Q Consensus        58 vlLPi~iTi~Il~~l~~~v~~~~~pl~~~l~~~~pglgl~~~-l~~i~~iG~la~~~ig~~ll~~~e~ll~rIP~V~sIY  136 (193)
                      .++|+.++.|+..++-.+++++....++.+  -.|.+.++++ .+.++++|=+. +++|..+-+.+.++... ++..-++
T Consensus       230 sViPiil~v~~~s~iek~~~K~iP~~l~~i--~~P~ltlli~~p~~l~viGP~g-~~i~~~i~~~~~~l~~~-~~~~~i~  305 (476)
T PRK09586        230 NIIGVLIAAIAGARIERMVRRFMPDDLDMI--LTSLITLLITGALAFLIIMPLG-GWLFEGMSWLFMHLNSN-PFGCAVL  305 (476)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhCHHHHHHH--HHHHHHHHHHHHHHHHhHHhHH-HHHHHHHHHHHHHHHhh-HHHHHHH
Confidence            578999999999999999999886655432  1344444432 33344444443 24555544555555443 6667777


Q ss_pred             HHHHHHHHHh
Q 029429          137 SASKQISAAI  146 (193)
Q Consensus       137 ssiKqi~~~f  146 (193)
                      ..+.+.+=.+
T Consensus       306 g~~~~~lV~~  315 (476)
T PRK09586        306 AGLFLIAVVF  315 (476)
T ss_pred             HHHHHHHhHh
Confidence            7777765444

>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component

Probab=81.60  E-value=19  Score=33.97  Aligned_cols=87  Identities=8%  Similarity=0.063  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHhhhhhhh-hHH
Q 029429           58 VLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIF-FVGVFASSWLGATVFWLGEWFIKRLPFM-KHI  135 (193)
Q Consensus        58 vlLPi~iTi~Il~~l~~~v~~~~~pl~~~l~~~~pglgl~~~l~~i~-~iG~la~~~ig~~ll~~~e~ll~rIP~V-~sI  135 (193)
                      -++|..+..|+..|+-.|++..+...++.+  -.|.+.+++.+.+.+ ++|-+.. +++..+...+.++....|.+ .-+
T Consensus       232 sVip~Il~g~i~~yiek~~~k~lP~~l~~~--~vP~lt~lv~~~l~~~vigPi~~-~i~~~i~~~~~~l~~~~~~i~g~i  308 (462)
T TIGR01992       232 QVLPALLAGYVLAVIEKWLRKRVPDAIQLL--VVPPVSLLVTGFLAHAIIGPIGR-LIGNGITSGVTALFTSAAWLGGAI  308 (462)
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHH
Confidence            358999999999999989988765555432  245555555443333 4464432 45555656666666666654 448


Q ss_pred             HHHHHHHHHHhC
Q 029429          136 YSASKQISAAIS  147 (193)
Q Consensus       136 YssiKqi~~~f~  147 (193)
                      |..+.+.+=.+-
T Consensus       309 ~G~l~~~lV~~G  320 (462)
T TIGR01992       309 FGLLYAPLVITG  320 (462)
T ss_pred             HHHHHHHHHHhc
Confidence            888888765543

Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.

>COG1684 FliR Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=81.52  E-value=30  Score=30.54  Aligned_cols=43  Identities=14%  Similarity=0.315  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029429           38 KACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFF   80 (193)
Q Consensus        38 ~~~~~~~~~~i~~~fl~GLlvlLPi~iTi~Il~~l~~~v~~~~   80 (193)
                      +..+..+-+++...|..|+..-+|++....+++..++.+++..
T Consensus       165 ~~~~~~l~~~l~~~F~~~l~iAlPii~~lLlvnlalGlv~R~~  207 (258)
T COG1684         165 DNAFLLLAKALSAIFLIGLRLALPIIALLLLVNLALGLLNRLA  207 (258)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4566778888999999999999999999999999999998876

>TIGR01996 PTS-II-BC-sucr PTS system, sucrose-specific IIBC component

Probab=81.19  E-value=23  Score=33.36  Aligned_cols=86  Identities=14%  Similarity=0.213  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHhhhhh-hhhHHH
Q 029429           59 LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTS-ILFIFFVGVFASSWLGATVFWLGEWFIKRLP-FMKHIY  136 (193)
Q Consensus        59 lLPi~iTi~Il~~l~~~v~~~~~pl~~~l~~~~pglgl~~~-l~~i~~iG~la~~~ig~~ll~~~e~ll~rIP-~V~sIY  136 (193)
                      ++|..++.|+..|+-++++..+...++.+  -.|.+.+++. ++.++++|.+.. +++..+.+.++.+.+.-+ +..-+|
T Consensus       230 Vip~Il~g~i~~~iek~~~k~~P~~l~~~--~vP~l~~lv~~~l~~~vigp~~~-~i~~~i~~~~~~l~~~~~~i~~~i~  306 (461)
T TIGR01996       230 VLPVLVAVWILAKIEKFLRKVVPNALDLL--LTPFLTLLITGFLTLLVIGPIGR-WVGDVLTDGLQWLYDLPGGLGGLLF  306 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhhhhh--hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHH
Confidence            89999999999999889988876666543  2455555554 344445776654 466667777777766433 455678


Q ss_pred             HHHHHHHHHhC
Q 029429          137 SASKQISAAIS  147 (193)
Q Consensus       137 ssiKqi~~~f~  147 (193)
                      ..+.++...+.
T Consensus       307 G~l~~~Lv~~G  317 (461)
T TIGR01996       307 GGLYSLIVITG  317 (461)
T ss_pred             HHHHHHHHHhc
Confidence            88877765443

This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00