Citrus Sinensis ID: 029432

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
MANPRSPRFQLLFAFQLLLLLQLQTKSFCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITVGNVSAESPAYGPSALPDFAPSYPTVFGSIPQPPSSSPSLSFSGILTAVIGSAACAILSGIM
ccccccHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccEEEEccEEEEEccccccEEEEEcHHHHccccccccccccccccEEEEEcccccEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcc
ccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccEEcccccccHHHHHHHccEEEEccEEEEEEccccccEEEEcHHHHHHcccccccEEccccccEEEEcccccEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHc
MANPRSPRFQLLFAFQLLLLLQLQTKsfchqykvgdldgwgiptsanplvYAKWSKyhtfaigdsllflyppsqdsvIQVTAQsydscklkdpilymnngnslFNITkegnfyftsgepghcqkkqklhitvgnvsaespaygpsalpdfapsyptvfgsipqppssspslsfsgILTAVIGSAACAILSGIM
MANPRSPRFQLLFAFQLLLLLQLQTKSFCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITVGNVSAESPAYGPSALPDFAPSYPTVFGSIPQPPSSSPSLSFSGILTAVIGSAACAILSGIM
MANPRSPRfqllfafqlllllqlqTKSFCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITVGNVSAESPAYGPSALPDFAPSYPTVfgsipqppssspslsfsgilTAVIGSAACAILSGIM
********FQLLFAFQLLLLLQLQTKSFCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITVG************************************************************
************FAFQLLLLLQLQTKSFCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHIT**********************************************TAVIGSAACAILSGIM
MANPRSPRFQLLFAFQLLLLLQLQTKSFCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITVGNVSAESPAYGPSALPDFAPSYPTVFGSIP********LSFSGILTAVIGSAACAILSGIM
*****SPRFQLLFAFQLLLLLQLQTKSFCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITVGNV************************************SFSGILTAVIGSAACAILSGI*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHi
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MANPRSPRFQLLFAFQLLLLLQLQTKSFCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITVGNVSAESPAYGPSALPDFAPSYPTVFGSIPQPPSSSPSLSFSGILTAVIGSAACAILSGIM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query193 2.2.26 [Sep-21-2011]
Q9T076 349 Early nodulin-like protei no no 0.694 0.383 0.355 2e-16
Q9SK27182 Early nodulin-like protei no no 0.590 0.626 0.344 9e-16
P80728108 Mavicyanin OS=Cucurbita p N/A no 0.507 0.907 0.405 1e-13
P00302107 Stellacyanin OS=Toxicoden N/A no 0.523 0.943 0.386 3e-13
Q5JNJ5237 Early nodulin-like protei no no 0.652 0.531 0.293 6e-13
Q8LC95186 Early nodulin-like protei no no 0.632 0.655 0.304 7e-13
Q41001189 Blue copper protein OS=Pi N/A no 0.601 0.613 0.344 2e-11
P93328180 Early nodulin-16 OS=Medic N/A no 0.621 0.666 0.296 1e-10
P93329268 Early nodulin-20 OS=Medic N/A no 0.611 0.440 0.276 1e-09
Q07488196 Blue copper protein OS=Ar no no 0.632 0.622 0.299 4e-09
>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1 Back     alignment and function desciption
 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 4/138 (2%)

Query: 10  QLLFAFQLLLLLQ-LQTKSFCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLF 68
            L F F +LL L  L T S   ++ VG    W    +  P  Y  WS  + F + D+L F
Sbjct: 8   SLSFFFTILLSLSTLFTISNARKFNVGGSGAW---VTNPPENYESWSGKNRFLVHDTLYF 64

Query: 69  LYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKL 128
            Y    DSV++V    YD+C  K+PI  +++G+S  ++ + G FYF SG   +C+K QKL
Sbjct: 65  SYAKGADSVLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKL 124

Query: 129 HITVGNVSAESPAYGPSA 146
           ++ V +    S A  P A
Sbjct: 125 NVVVISARIPSTAQSPHA 142

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2 Back     alignment and function description
>sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1 Back     alignment and function description
>sp|P00302|STEL_TOXVR Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1 Back     alignment and function description
>sp|Q5JNJ5|ENL1_ORYSJ Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=ENODL1 PE=1 SV=1 Back     alignment and function description
>sp|Q8LC95|ENL3_ARATH Early nodulin-like protein 3 OS=Arabidopsis thaliana GN=At5g25090 PE=1 SV=2 Back     alignment and function description
>sp|Q41001|BCP_PEA Blue copper protein OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|P93328|NO16_MEDTR Early nodulin-16 OS=Medicago truncatula GN=ENOD16 PE=3 SV=1 Back     alignment and function description
>sp|P93329|NO20_MEDTR Early nodulin-20 OS=Medicago truncatula GN=ENOD20 PE=3 SV=1 Back     alignment and function description
>sp|Q07488|BCB1_ARATH Blue copper protein OS=Arabidopsis thaliana GN=BCB PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query193
255555717194 Stellacyanin, putative [Ricinus communis 0.989 0.984 0.693 2e-70
224053735169 predicted protein [Populus trichocarpa] 0.860 0.982 0.760 6e-68
225426627192 PREDICTED: early nodulin-like protein 1 0.979 0.984 0.663 2e-62
356575114193 PREDICTED: early nodulin-like protein 1- 0.932 0.932 0.651 2e-61
356547517197 PREDICTED: stellacyanin-like [Glycine ma 0.994 0.974 0.651 4e-61
351728003186 uncharacterized protein LOC100527517 pre 0.917 0.951 0.646 5e-57
297742423174 unnamed protein product [Vitis vinifera] 0.886 0.982 0.664 2e-56
351727000195 uncharacterized protein LOC100527661 pre 0.979 0.969 0.608 2e-56
388506188192 unknown [Medicago truncatula] 0.766 0.770 0.710 4e-52
388513939198 unknown [Lotus japonicus] 0.875 0.853 0.582 6e-48
>gi|255555717|ref|XP_002518894.1| Stellacyanin, putative [Ricinus communis] gi|223541881|gb|EEF43427.1| Stellacyanin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 136/196 (69%), Positives = 155/196 (79%), Gaps = 5/196 (2%)

Query: 1   MANPRSPRFQLLFAFQLLLLLQLQTKSFCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTF 60
           MAN RSP+F +L+AFQL+ L+  Q    C+QYKVGDLD WGIPTSANP VY  WSKYHTF
Sbjct: 1   MANLRSPKFMVLYAFQLIFLVHFQVS--CYQYKVGDLDAWGIPTSANPKVYIFWSKYHTF 58

Query: 61  AIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITKEGNFYFTSGEPG 120
            IGDSLLFLYPPSQDSVIQVT Q+Y+SC L DP+LYM NGNSLFNIT  G+FYFTSG PG
Sbjct: 59  KIGDSLLFLYPPSQDSVIQVTEQNYNSCNLTDPVLYMKNGNSLFNITANGHFYFTSGVPG 118

Query: 121 HCQKKQKLHITVGNVSAESPAYGPSALPDF--APSYPTVFGSIPQPPS-SSPSLSFSGIL 177
           HC+KKQKLHI+VGN S  SP+ G SALPD   APSYPT FG+IP PPS SSP+  FS   
Sbjct: 119 HCEKKQKLHISVGNDSDISPSNGSSALPDTAAAPSYPTNFGTIPLPPSASSPTYRFSIFF 178

Query: 178 TAVIGSAACAILSGIM 193
           +AVIG+   A ++GIM
Sbjct: 179 SAVIGAVISAYINGIM 194

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224053735|ref|XP_002297953.1| predicted protein [Populus trichocarpa] gi|222845211|gb|EEE82758.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225426627|ref|XP_002280885.1| PREDICTED: early nodulin-like protein 1 [Vitis vinifera] gi|147827006|emb|CAN62283.1| hypothetical protein VITISV_034699 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356575114|ref|XP_003555687.1| PREDICTED: early nodulin-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356547517|ref|XP_003542158.1| PREDICTED: stellacyanin-like [Glycine max] Back     alignment and taxonomy information
>gi|351728003|ref|NP_001237180.1| uncharacterized protein LOC100527517 precursor [Glycine max] gi|255632526|gb|ACU16613.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|297742423|emb|CBI34572.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|351727000|ref|NP_001235610.1| uncharacterized protein LOC100527661 precursor [Glycine max] gi|255632880|gb|ACU16793.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388506188|gb|AFK41160.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388513939|gb|AFK45031.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query193
TAIR|locus:2019414191 ENODL8 "early nodulin-like pro 0.823 0.832 0.537 1.9e-42
TAIR|locus:2085775203 ENODL9 "early nodulin-like pro 0.663 0.630 0.357 4.4e-20
TAIR|locus:2028396177 ENODL6 "early nodulin-like pro 0.611 0.666 0.360 5.8e-18
TAIR|locus:2017819192 ENODL7 "early nodulin-like pro 0.611 0.614 0.371 1.6e-17
TAIR|locus:2127861221 ENODL4 "early nodulin-like pro 0.621 0.542 0.349 1.6e-17
TAIR|locus:2086899188 ENODL5 "early nodulin-like pro 0.637 0.654 0.359 2e-17
TAIR|locus:2062525261 UCC1 "uclacyanin 1" [Arabidops 0.626 0.463 0.359 3.2e-17
TAIR|locus:505006529199 ENODL3 "early nodulin-like pro 0.601 0.582 0.352 8.6e-17
TAIR|locus:2116767177 ENODL15 "early nodulin-like pr 0.637 0.694 0.364 8.6e-17
TAIR|locus:2151069187 AT5G26330 [Arabidopsis thalian 0.637 0.657 0.373 1.1e-16
TAIR|locus:2019414 ENODL8 "early nodulin-like protein 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 87/162 (53%), Positives = 103/162 (63%)

Query:    32 YKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLK 91
             YKVGDLD WGIP  A   VY+KW K H+F IGDSLLFLYPPS+DS+IQVT  ++ SC  K
Sbjct:    33 YKVGDLDAWGIPIDAK--VYSKWPKSHSFKIGDSLLFLYPPSEDSLIQVTPSNFKSCNTK 90

Query:    92 DPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITVGNVSAESPAYGPSALPDFA 151
             DPILYMN+GNSLFN+T+ G  YFTS  PGHC K QKL ++VG  SAE+ A  PS+  D A
Sbjct:    91 DPILYMNDGNSLFNLTQNGTLYFTSANPGHCTKYQKLLVSVGTYSAEAEALSPSSAAD-A 149

Query:   152 PSYPTVXXXXXXXXXXXXXXXXXXXXTAVIGSAACAILSGIM 193
             PSY                       + V  S ACA++  IM
Sbjct:   150 PSYQNAFGSIPLSQKSSASSSLISAFSTVAASLACAVVGAIM 191
GO:0005507 "copper ion binding" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009055 "electron carrier activity" evidence=IEA
GO:0031225 "anchored to membrane" evidence=TAS
TAIR|locus:2085775 ENODL9 "early nodulin-like protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028396 ENODL6 "early nodulin-like protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017819 ENODL7 "early nodulin-like protein 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127861 ENODL4 "early nodulin-like protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086899 ENODL5 "early nodulin-like protein 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062525 UCC1 "uclacyanin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006529 ENODL3 "early nodulin-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116767 ENODL15 "early nodulin-like protein 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151069 AT5G26330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
pfam0229884 pfam02298, Cu_bind_like, Plastocyanin-like domain 2e-24
PLN03148167 PLN03148, PLN03148, Blue copper-like protein; Prov 8e-08
>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain Back     alignment and domain information 
 Score = 90.8 bits (226), Expect = 2e-24
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 40  WGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNN 99
           W +P +A+   Y  W+   TF +GD+L+F Y     +V++VT   Y+SC    PI     
Sbjct: 1   WTVPLNAD---YTLWASGKTFRVGDTLVFNYDKGFHNVVEVTKADYESCNTSKPIRTYTT 57

Query: 100 GNSLFNITKEGNFYFTSGEPGHCQKKQ 126
           GN +  +TK G  YF  G PGHC+  Q
Sbjct: 58  GNDIIPLTKPGQHYFICGVPGHCKGGQ 84

This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues. Length = 84
>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 193
PLN03148167 Blue copper-like protein; Provisional 100.0
PF0229885 Cu_bind_like: Plastocyanin-like domain; InterPro: 100.0
PRK02710119 plastocyanin; Provisional 98.67
PF0012799 Copper-bind: Copper binding proteins, plastocyanin 98.44
TIGR0265699 cyanin_plasto plastocyanin. Members of this family 98.36
TIGR03102115 halo_cynanin halocyanin domain. Halocyanins are bl 98.12
COG3794128 PetE Plastocyanin [Energy production and conversio 98.0
TIGR02375116 pseudoazurin pseudoazurin. Pseudoazurin, also call 98.0
TIGR0265783 amicyanin amicyanin. Members of this family are am 97.24
TIGR03095148 rusti_cyanin rusticyanin. Rusticyanin is a blue co 96.95
PF06525196 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb 96.48
PF00812145 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a 96.35
KOG3858233 consensus Ephrin, ligand for Eph receptor tyrosine 96.17
PF13473104 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 95.46
TIGR03094195 sulfo_cyanin sulfocyanin. Members of this family a 94.91
COG4454158 Uncharacterized copper-binding protein [Inorganic 92.11
TIGR03096135 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de 90.56
TIGR02376 311 Cu_nitrite_red nitrite reductase, copper-containin 88.24
TIGR02695125 azurin azurin. Azurin is a blue copper-binding pro 87.01
PF07732117 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01 84.03
PRK02888635 nitrous-oxide reductase; Validated 83.21
PRK10378 375 inactive ferrous ion transporter periplasmic prote 80.25
>PLN03148 Blue copper-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.9e-43  Score=285.20  Aligned_cols=104  Identities=27%  Similarity=0.554  Sum_probs=97.8

Q ss_pred             ccceeeEEEecCCCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCceeccCCceEE
Q 029432           25 TKSFCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLF  104 (193)
Q Consensus        25 ~~a~A~~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v  104 (193)
                      ..+.|++|+|||+.||+..     .+|++|+++++|+|||+|+|+|++++|+|+||+|++|++|+.++++..+++|++.|
T Consensus        16 ~~~~a~~~~VGd~~GW~~~-----~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v   90 (167)
T PLN03148         16 SATTATDHIVGANKGWNPG-----INYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFI   90 (167)
T ss_pred             hhccceEEEeCCCCCcCCC-----CChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEE
Confidence            3578899999999999843     36999999999999999999999999999999999999999999999999999999


Q ss_pred             EecccccEEEEcCCCCcccCCCeEEEEeeC
Q 029432          105 NITKEGNFYFTSGEPGHCQKKQKLHITVGN  134 (193)
Q Consensus       105 ~L~~~G~~YFicg~~gHC~~GmKl~I~V~~  134 (193)
                      +|+++|+|||||+ .+||++||||+|+|.+
T Consensus        91 ~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~  119 (167)
T PLN03148         91 PLNKAKRYYFICG-NGQCFNGMKVTILVHP  119 (167)
T ss_pred             EecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence            9999999999999 6999999999999964

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>PRK02710 plastocyanin; Provisional Back     alignment and domain information
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>TIGR02656 cyanin_plasto plastocyanin Back     alignment and domain information
>TIGR03102 halo_cynanin halocyanin domain Back     alignment and domain information
>COG3794 PetE Plastocyanin [Energy production and conversion] Back     alignment and domain information
>TIGR02375 pseudoazurin pseudoazurin Back     alignment and domain information
>TIGR02657 amicyanin amicyanin Back     alignment and domain information
>TIGR03095 rusti_cyanin rusticyanin Back     alignment and domain information
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus Back     alignment and domain information
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO) Back     alignment and domain information
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D Back     alignment and domain information
>TIGR03094 sulfo_cyanin sulfocyanin Back     alignment and domain information
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03096 nitroso_cyanin nitrosocyanin Back     alignment and domain information
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing Back     alignment and domain information
>TIGR02695 azurin azurin Back     alignment and domain information
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
1ws7_A109 Crystal Structure Of Mavicyanin From Cucurbita Pepo 8e-15
1jer_A138 Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138 4e-09
1x9r_A116 Umecyanin From Horse Raddish- Crystal Structure Of 5e-08
2cbp_A96 Cucumber Basic Protein, A Blue Copper Protein Lengt 4e-06
1f56_A91 Spinach Plantacyanin Length = 91 1e-04
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) Length = 109 Back     alignment and structure 
Iteration: 1

 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 32  YKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLK 91
           +KVGD  GW   T+  P  YAKW+  + F +GDSLLF Y     +V+QV  + + SC   
Sbjct: 5   HKVGDSTGW---TTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61
Query: 92  DPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITV 132
            P     +G     + + G FYF  G PGHCQ  QK+ I V
Sbjct: 62  SPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138 Back     alignment and structure
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The Oxidised Form Length = 116 Back     alignment and structure
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein Length = 96 Back     alignment and structure
>pdb|1F56|A Chain A, Spinach Plantacyanin Length = 91 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 3e-39
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 2e-36
1jer_A138 Cucumber stellacyanin; electron transport, copper, 6e-35
2cbp_A96 Cucumber basic protein; electron transport, phytoc 4e-33
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 5e-30
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116 Back     alignment and structure
 Score =  129 bits (325), Expect = 3e-39
 Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 2/116 (1%)

Query: 31  QYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKL 90
            Y VG    W  P+  +P  Y  W+   TF +GD L F +      V  VT  ++D+CK 
Sbjct: 3   DYDVGGDMEWKRPS--DPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKK 60

Query: 91  KDPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITVGNVSAESPAYGPSA 146
           ++PI +M        +   G  Y+      HC+  QKL I V           P A
Sbjct: 61  ENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAGGAGGGATPGA 116
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109 Back     alignment and structure
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138 Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query193
1jer_A138 Cucumber stellacyanin; electron transport, copper, 100.0
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 100.0
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 100.0
2cbp_A96 Cucumber basic protein; electron transport, phytoc 100.0
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 100.0
1qhq_A140 Protein (auracyanin); electron transfer, cupredoxi 99.31
1bxv_A91 Plastocyanin; copper protein, electron transfer; 1 99.23
2cal_A154 Rusticyanin; iron respiratory electron transport c 99.16
1iuz_A98 Plastocyanin; electron transport; 1.60A {Ulva pert 98.98
2aan_A139 Auracyanin A; cupredoxin fold, electron transport; 98.93
1pmy_A123 Pseudoazurin; electron transfer(cuproprotein); 1.5 98.93
1plc_A99 Plastocyanin; electron transport; 1.33A {Populus n 98.91
1paz_A123 Pseudoazurin precursor; electron transfer(cupropro 98.91
2gim_A106 Plastocyanin; beta sheet, Cu, helix, electron tran 98.9
2plt_A98 Plastocyanin; electron transport; 1.50A {Chlamydom 98.88
1kdj_A102 Plastocyanin; electron transfer, photosystem, PAI- 98.85
1byp_A99 Protein (plastocyanin); electron transfer, photosy 98.81
3erx_A123 Pseudoazurin; copper protein, high-resolution, E t 98.81
3tu6_A127 Pseudoazurin (blue copper protein); cupredoxins, b 98.8
1b3i_A97 PETE protein, protein (plastocyanin); electron tra 98.79
3ef4_A124 Pseudoazurin, blue copper protein; electron transf 98.77
1pcs_A98 Plastocyanin; electron transport; 2.15A {Synechocy 98.62
3c75_A132 Amicyanin; copper proteins, electron transfer comp 98.36
3cvb_A105 Plastocyanin; cupredoxin, SELF assembly, copper, e 98.16
4hci_A100 Cupredoxin 1; structural genomics, niaid, national 98.15
3ay2_A167 Lipid modified azurin protein; beta sandwich, bact 98.13
2ux6_A122 Pseudoazurin; type-1 copper, metal-binding, redox 98.12
1cuo_A129 Protein (azurin ISO-2); beta barrel, periplasmic, 98.04
2ov0_A105 Amicyanin; beta-sandwich, electron transport; 0.75 97.96
1id2_A106 Amicyanin; beta barrel, type-1 blue copper protein 97.84
2iaa_C128 Azurin; quinoprotein, tryptophan tryptophylquinone 97.8
1nwp_A128 Azurin; electron transport, cupredoxin, electron t 97.78
1iko_P178 Ephrin-B2; greek KEY, glycosylation, signaling pro 97.72
2ccw_A129 Azurin II, AZN-2; electron transport (cuproprotein 97.72
3czu_B182 Ephrin-A1; ATP-binding, kinase, nucleotide-binding 97.62
2x11_B177 Ephrin-A5; receptor-signaling protein complex, dev 97.54
3d12_B141 Ephrin-B3; beta propeller, protein-receptor comple 97.28
1iby_A112 Nitrosocyanin; RED copper, cupredoxin, beta hairpi 96.99
2vsm_B140 Ephrin-B2; developmental protein, henipavirus, neu 96.9
1shx_A138 Ephrin-A5; ephrin signaling, hormone-growth factor 96.88
2cua_A135 Protein (CUA); CUA center, electron transport; 1.6 95.93
2wo3_B157 Ephrin-A2; transferase-signaling protein complex, 95.85
3fsa_A125 Azurin; copper, cupredoxin fold, metal-binding, pr 95.03
2dv6_A 447 Nitrite reductase; electron transfer, reduction, d 94.49
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 93.28
3hei_B132 Ephrin-A1; EPH receptor tyrosine kinase, cell memb 93.21
3s8f_B168 Cytochrome C oxidase subunit 2; complex IV, respir 91.9
3sbq_A638 Nitrous-oxide reductase; beta-propeller, cupredoxi 91.25
1mzy_A 333 Copper-containing nitrite reductase; mutant M182T, 84.62
1oe1_A 336 Dissimilatory copper-containing nitrite reductase; 83.78
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
Probab=100.00  E-value=1.4e-44  Score=286.13  Aligned_cols=109  Identities=32%  Similarity=0.585  Sum_probs=101.6

Q ss_pred             eeeEEEecCCCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCCCCeEEEE-cccCCCCCCCCCCceeccCCceEEEe
Q 029432           28 FCHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQV-TAQSYDSCKLKDPILYMNNGNSLFNI  106 (193)
Q Consensus        28 ~A~~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~~hsV~~V-~~~~Y~~C~~s~pi~~~~~G~~~v~L  106 (193)
                      +|++|+|||+.||+++++  ..+|++||++++|+|||+|+|+|.+++|+|+|| +|++|+.|+.++++..+++|+++|+|
T Consensus         2 ~a~~~~VGg~~GW~~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L   79 (138)
T 1jer_A            2 QSTVHIVGDNTGWSVPSS--PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIER   79 (138)
T ss_dssp             CCCEEETTGGGCSSCCSS--TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEE
T ss_pred             CceEEEECCcCcCcCCCC--ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEe
Confidence            578999999999999853  357999999999999999999999999999999 99999999999999999999999999


Q ss_pred             -cccccEEEEcCCCCcccCCCeEEEEeeCCCCC
Q 029432          107 -TKEGNFYFTSGEPGHCQKKQKLHITVGNVSAE  138 (193)
Q Consensus       107 -~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~  138 (193)
                       +++|++||||++++||++||||+|+|....+.
T Consensus        80 ~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~  112 (138)
T 1jer_A           80 LDELGMHYFVCTVGTHCSNGQKLSINVVAANAT  112 (138)
T ss_dssp             CCSSEEEEEECCSTTTGGGTCEEEEEEECCC--
T ss_pred             ccCCcCEEEEcCCCCccccCCEEEEEEcCCCCC
Confidence             99999999999999999999999999987654
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Back     alignment and structure
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Back     alignment and structure
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A Back     alignment and structure
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A Back     alignment and structure
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A Back     alignment and structure
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A Back     alignment and structure
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} Back     alignment and structure
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1 Back     alignment and structure
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A Back     alignment and structure
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A* Back     alignment and structure
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A Back     alignment and structure
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1 Back     alignment and structure
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A Back     alignment and structure
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A Back     alignment and structure
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A Back     alignment and structure
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A* Back     alignment and structure
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0 Back     alignment and structure
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A Back     alignment and structure
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A Back     alignment and structure
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A Back     alignment and structure
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A Back     alignment and structure
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Back     alignment and structure
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ... Back     alignment and structure
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1 Back     alignment and structure
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* Back     alignment and structure
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A Back     alignment and structure
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5 Back     alignment and structure
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A Back     alignment and structure
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B* Back     alignment and structure
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens} Back     alignment and structure
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus} Back     alignment and structure
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A Back     alignment and structure
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E Back     alignment and structure
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B* Back     alignment and structure
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* Back     alignment and structure
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens} Back     alignment and structure
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ... Back     alignment and structure
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0 Back     alignment and structure
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ... Back     alignment and structure
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A Back     alignment and structure
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A Back     alignment and structure
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 193
d2cbpa_96 b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ 2e-33
d1ws8a_104 b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) 2e-33
d1jera_110 b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ 2e-28
d1f56a_91 b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera 6e-26
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96 Back     information, alignment and structure

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  112 bits (282), Expect = 2e-33
 Identities = 30/101 (29%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 32  YKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLK 91
           Y VG   GW             W K   F  GD LLF Y PS  +V+ V    + +C   
Sbjct: 3   YVVGGSGGWTFN-------TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTP 55

Query: 92  DPILYMNNGNSLFNITKEGNFYFTSGEPGHCQKKQKLHITV 132
                  +G     + K G  YF    PGHCQ   K+ +  
Sbjct: 56  AGAKVYTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVNA 95
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104 Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110 Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query193
d1ws8a_104 Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663 100.0
d2cbpa_96 Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1jera_110 Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1f56a_91 Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 100.0
d1bypa_99 Plastocyanin {White campion (Silene pratensis) [Ta 99.02
d1iuza_98 Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 99.01
d2plta_98 Plastocyanin {Green alga (Chlamydomonas reinhardti 98.92
d1kdja_102 Plastocyanin {Fern (Adiantum capillus-veneris) [Ta 98.88
d2cj3a1105 Plastocyanin {Anabaena variabilis [TaxId: 1172]} 98.85
d1paza_120 Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta 98.8
d1plca_99 Plastocyanin {Poplar (Populus nigra), variant ital 98.8
d1adwa_123 Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236 98.79
d2q5ba1105 Plastocyanin {Cyanobacterium (Phormidium laminosum 98.76
d2jxma197 Plastocyanin {Photosynthetic prokaryote (Prochloro 98.72
d1bqka_124 Pseudoazurin {Achromobacter cycloclastes [TaxId: 2 98.62
d1pmya_123 Pseudoazurin {Methylobacterium extorquens, strain 98.59
d1qhqa_139 Auracyanin {Chloroflexus aurantiacus [TaxId: 1108] 98.52
d1bxua_91 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.48
d1pcsa_98 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.46
d2ov0a1105 Amicyanin {Paracoccus denitrificans [TaxId: 266]} 98.17
d1id2a_106 Amicyanin {Paracoccus versutus (Thiobacillus versu 97.77
d1cuoa_129 Azurin {Methylomonas sp. j [TaxId: 32038]} 97.58
d2ccwa1129 Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d 97.44
d1e30a_153 Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920 97.22
d1ibya_112 Red copper protein nitrosocyanin {Nitrosomonas eur 97.17
d1shxa1138 Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} 96.94
d1ikop_141 Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 96.21
d1fwxa1132 Nitrous oxide reductase, C-terminal domain {Paraco 96.14
d1qnia1131 Nitrous oxide reductase, C-terminal domain {Pseudo 95.86
d1nwpa_128 Azurin {Pseudomonas putida [TaxId: 303]} 95.85
d2cuaa_122 Cytochrome c oxidase {Thermus thermophilus, ba3 ty 95.38
d1kbva1151 Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani 95.34
d1jzga_128 Azurin {Pseudomonas aeruginosa [TaxId: 287]} 94.73
d1aoza1129 Ascorbate oxidase {Zucchini (Cucurbita pepo var. m 94.54
d1oe2a1159 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 93.55
d1mzya1153 Nitrite reductase, NIR {Rhodobacter sphaeroides [T 91.95
d1gyca1130 Laccase {Trametes versicolor, laccase 2 [TaxId: 53 91.43
d2bw4a1157 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 89.95
d2q9oa1162 Laccase {Melanocarpus albomyces [TaxId: 204285]} 88.34
d1hfua1131 Laccase {Inky cap fungus (Coprinus cinereus) [TaxI 84.79
d1kcwa2146 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 83.83
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Back     information, alignment and structure
class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

Probab=100.00  E-value=2.2e-40  Score=248.52  Aligned_cols=103  Identities=38%  Similarity=0.710  Sum_probs=98.3

Q ss_pred             eeEEEecCCCCCCCCCCCCcccccccccCCeeeeCCEEEEEeCCCCCeEEEEcccCCCCCCCCCCceeccCCceEEEecc
Q 029432           29 CHQYKVGDLDGWGIPTSANPLVYAKWSKYHTFAIGDSLLFLYPPSQDSVIQVTAQSYDSCKLKDPILYMNNGNSLFNITK  108 (193)
Q Consensus        29 A~~~~VG~~~GW~~~~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~  108 (193)
                      |++|+|||++||+++++   .+|++|+++++|++||+|+|+|.++.|+|+||++++|++|+..+++..+++|++.|+|++
T Consensus         2 at~~~VGg~~gW~~~~~---~~Y~~Wa~~~~f~vGD~l~F~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~   78 (104)
T d1ws8a_           2 ATVHKVGDSTGWTTLVP---YDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKR   78 (104)
T ss_dssp             CCEEETTGGGCSCSSSC---CCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCS
T ss_pred             CcEEEeCCcCccCcCCC---cCHHHHhhCCcCCCCCEEEEEECCCCceEEEECHHHhcCCcCCCccccccCCCeEEEEec
Confidence            68999999999998764   359999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccEEEEcCCCCcccCCCeEEEEeeC
Q 029432          109 EGNFYFTSGEPGHCQKKQKLHITVGN  134 (193)
Q Consensus       109 ~G~~YFicg~~gHC~~GmKl~I~V~~  134 (193)
                      +|++||||++++||++||||.|+|++
T Consensus        79 ~g~~yF~C~~~~HC~~Gmkl~I~V~P  104 (104)
T d1ws8a_          79 PGTFYFLCGIPGHCQLGQKVEIKVDP  104 (104)
T ss_dssp             SEEEEEECCSTTTTTTTCEEEEEECC
T ss_pred             CccEEEECCCcchhhCCCEEEEEECC
Confidence            99999999999999999999999973
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]} Back     information, alignment and structure
>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]} Back     information, alignment and structure
>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]} Back     information, alignment and structure
>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]} Back     information, alignment and structure
>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]} Back     information, alignment and structure
>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} Back     information, alignment and structure
>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]} Back     information, alignment and structure
>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]} Back     information, alignment and structure
>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} Back     information, alignment and structure
>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]} Back     information, alignment and structure
>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]} Back     information, alignment and structure
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]} Back     information, alignment and structure
>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]} Back     information, alignment and structure
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Back     information, alignment and structure
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]} Back     information, alignment and structure
>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Back     information, alignment and structure
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Back     information, alignment and structure
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]} Back     information, alignment and structure
>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]} Back     information, alignment and structure
>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure