Citrus Sinensis ID: 029446

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHcccEEEEccccccEEEEEEEccEEEEEEEEccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccHHHHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccccEEEEEEEcccccHHHHHHHHccccEEEEEEEccEEEEEEEEccEEEEEEEccccccccHHHHHHHHHEEEEEEEEEcccHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccHHHHHHHHcccccccccEEEEEcEccccEcHHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIgevlstvptigfnvekVQYKNVIFTVwdvggqeklrpLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANkqdmkgamtpmevceglglfdlknrkwhiqgtcalkgdglyEGLDWLASTLKEMRAagyssvgtssf
Flexible Loop (DISEMBL)
MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFqaiikdpfmLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRaagyssvgtssf
Low Complexity Region (SEG)
MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF
Disordered region (IsUnstruct)
****FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE**************
Disordered Region (DISOPRED)
*GQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA*******************
Disordered Region (DISEMBL)
MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAA**********
Disordered Region (DISPRO)
*GQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
P91924	183	ADP-ribosylation factor O	N/A	no	0.922	0.972	0.623	2e-66
P61210	182	ADP-ribosylation factor 1	N/A	no	0.922	0.978	0.623	7e-66
P61209	182	ADP-ribosylation factor 1	yes	no	0.922	0.978	0.623	7e-66
Q61LA8	181	ADP-ribosylation factor 1	N/A	no	0.922	0.983	0.629	1e-65
Q10943	181	ADP-ribosylation factor 1	yes	no	0.922	0.983	0.629	1e-65
P34727	183	ADP-ribosylation factor O	N/A	no	0.927	0.978	0.614	2e-65
P84082	181	ADP-ribosylation factor 2	yes	no	0.937	1.0	0.602	4e-65
Q8BSL7	181	ADP-ribosylation factor 2	yes	no	0.937	1.0	0.602	4e-65
P84081	181	ADP-ribosylation factor 2	yes	no	0.937	1.0	0.602	4e-65
P36579	180	ADP-ribosylation factor 1	yes	no	0.922	0.988	0.601	2e-64

>sp|P91924|ARF_DUGJA ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3

 Score =  251 bits (642), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 111/178 (62%), Positives = 142/178 (79%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG     L D  FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1   MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           +LVFANKQD+  AM P E+ + LGL  L+NR W+IQ TCA  GDGLYEGLDWL++TLK
Sbjct: 121 LLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLK 178

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.
Dugesia japonica (taxid: 6161)

>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2

 Score =  249 bits (636), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 111/178 (62%), Positives = 142/178 (79%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG  F  LF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1   MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRERIG+A++E   ++ +  + ++V
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           +L+FANKQD+  AM   E+ + LGL  L+NR W+IQ TCA  GDGLYEGLDWL++ LK
Sbjct: 121 LLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 178

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Locusta migratoria (taxid: 7004)

>sp|P61209|ARF1_DROME ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=2 SV=2

 Score =  249 bits (636), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 111/178 (62%), Positives = 142/178 (79%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG  F  LF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1   MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRERIG+A++E   ++ +  + ++V
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           +L+FANKQD+  AM   E+ + LGL  L+NR W+IQ TCA  GDGLYEGLDWL++ LK
Sbjct: 121 LLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 178

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Drosophila melanogaster (taxid: 7227)

>sp|Q61LA8|ARF12_CAEBR ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3

 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 142/178 (79%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG  F  LF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1   MGNVFGSLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+G+A++E   ++ +  + ++V
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           +LVFANKQD+  AM   EV + LGL  L+NR W+IQ TCA  GDGLYEGLDWL++ LK
Sbjct: 121 LLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLK 178

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Involved in endoplasmic reticulum dynamics during embryogenesis. Also required for adult germline function.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q10943|ARF12_CAEEL ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=2 SV=2

 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 142/178 (79%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG  F  LF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1   MGNVFGSLFKGLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+G+A++E   ++ +  + ++V
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           +LVFANKQD+  AM   EV + LGL  L+NR W+IQ TCA  GDGLYEGLDWL++ LK
Sbjct: 121 LLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLK 178

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus (By similarity). Involved in endoplasmic reticulum dynamics during embryogenesis. Also required for adult germline function.

Caenorhabditis elegans (taxid: 6239)

>sp|P34727|ARF_AJECA ADP-ribosylation factor OS=Ajellomyces capsulatus GN=ARF PE=1 SV=3

 Score =  248 bits (634), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 110/179 (61%), Positives = 146/179 (81%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG AF KLFD  +G  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1   MGMAFSKLFDRIWGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHYF NT G+I+VVDS DR+R+ +A++E Q ++ +  + +++
Sbjct: 61  IQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDAL 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
           +LVFANKQD+  AM+P E+ + LGL  L  R W+IQ TCA  GDGLYEGL+WLA+ LK+
Sbjct: 121 LLVFANKQDLPNAMSPAEITQQLGLQSLTRRAWYIQSTCATTGDGLYEGLEWLANALKK 179

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Ajellomyces capsulatus (taxid: 5037)

>sp|P84082|ARF2_RAT ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1

 Score =  247 bits (630), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 109/181 (60%), Positives = 141/181 (77%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG  F KLF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1   MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           +LVF NKQD+  AM   E+ + LGL  L+ R W+IQ TCA  GDGLYEGLDWL++ LK  
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180

Query: 181 R 181
           +
Sbjct: 181 K 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Rattus norvegicus (taxid: 10116)

>sp|Q8BSL7|ARF2_MOUSE ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2

 Score =  247 bits (630), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 109/181 (60%), Positives = 141/181 (77%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG  F KLF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1   MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           +LVF NKQD+  AM   E+ + LGL  L+ R W+IQ TCA  GDGLYEGLDWL++ LK  
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180

Query: 181 R 181
           +
Sbjct: 181 K 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Mus musculus (taxid: 10090)

>sp|P84081|ARF2_BOVIN ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1

 Score =  247 bits (630), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 109/181 (60%), Positives = 141/181 (77%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG  F KLF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1   MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           +LVF NKQD+  AM   E+ + LGL  L+ R W+IQ TCA  GDGLYEGLDWL++ LK  
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180

Query: 181 R 181
           +
Sbjct: 181 K 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Bos taurus (taxid: 9913)

>sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arf1 PE=2 SV=2

 Score =  245 bits (625), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 107/178 (60%), Positives = 143/178 (80%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG +  KLF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+Y+N
Sbjct: 1   MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHYF NT G+I+VVDS DRERI +A +E Q ++ +  + +++
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDAL 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           +LVFANKQD+  AM   E+ + LGL  L++R+W+IQ TCA  GDGLYEGL+WL++ LK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLK 178

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
255557975	193	ADP-ribosylation factor, arf, putative [	1.0	1.0	0.958	1e-106
225454817	193	PREDICTED: ADP-ribosylation factor [Viti	1.0	1.0	0.958	1e-106
224126653	193	predicted protein [Populus trichocarpa]	1.0	1.0	0.953	1e-105
58220034	192	ADP-ribosylation factor [Daucus carota]	0.994	1.0	0.947	1e-105
224144915	193	predicted protein [Populus trichocarpa]	1.0	1.0	0.927	1e-104
449451823	192	PREDICTED: ADP-ribosylation factor-like	0.989	0.994	0.952	1e-103
449525399	192	PREDICTED: ADP-ribosylation factor-like	0.989	0.994	0.947	1e-102
357474237	195	ADP-ribosylation factor-like protein [Me	1.0	0.989	0.923	1e-101
297807727	192	hypothetical protein ARALYDRAFT_488569 [	0.989	0.994	0.916	1e-101
15237901	192	ADP-ribosylation factor B1B [Arabidopsis	0.989	0.994	0.916	1e-101

>gi|255557975|ref|XP_002520016.1| ADP-ribosylation factor, arf, putative [Ricinus communis] gi|223540780|gb|EEF42340.1| ADP-ribosylation factor, arf, putative [Ricinus communis]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/193 (95%), Positives = 191/193 (98%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MGQAFRKLFD FFGN+EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN
Sbjct: 1   MGQAFRKLFDTFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           V+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG+AK EFQAIIKDPFMLNSV
Sbjct: 61  VMFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGRAKAEFQAIIKDPFMLNSV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           +LVFANKQDMKGAMTPMEVCEGLGLF+LKNRKWHIQGTCAL+GDGLYEGLDWLASTLKEM
Sbjct: 121 LLVFANKQDMKGAMTPMEVCEGLGLFELKNRKWHIQGTCALRGDGLYEGLDWLASTLKEM 180

Query: 181 RAAGYSSVGTSSF 193
           RAAGYSSVGTSSF
Sbjct: 181 RAAGYSSVGTSSF 193

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454817|ref|XP_002274926.1| PREDICTED: ADP-ribosylation factor [Vitis vinifera] gi|147778405|emb|CAN63035.1| hypothetical protein VITISV_023129 [Vitis vinifera] gi|297737336|emb|CBI26537.3| unnamed protein product [Vitis vinifera]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/193 (95%), Positives = 190/193 (98%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MGQAFRKLFD FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN
Sbjct: 1   MGQAFRKLFDTFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           V+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAK EFQAII+DPFMLNSV
Sbjct: 61  VMFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKAEFQAIIRDPFMLNSV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           IL+FANKQDMKGAMTPMEVCEGLGL+DLKNRKWHIQGTCALKGDGLYEGLDWLA TLKE+
Sbjct: 121 ILIFANKQDMKGAMTPMEVCEGLGLYDLKNRKWHIQGTCALKGDGLYEGLDWLAGTLKEL 180

Query: 181 RAAGYSSVGTSSF 193
           RAAGYSSVGTSSF
Sbjct: 181 RAAGYSSVGTSSF 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126653|ref|XP_002319891.1| predicted protein [Populus trichocarpa] gi|222858267|gb|EEE95814.1| predicted protein [Populus trichocarpa]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/193 (95%), Positives = 189/193 (97%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MGQAFRKLFD FFGN+EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN
Sbjct: 1   MGQAFRKLFDTFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           V+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAK EFQ IIKDPFMLNSV
Sbjct: 61  VVFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKAEFQTIIKDPFMLNSV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           ILVFANKQDMKGAMTPMEVCEGLGLF+LKNRKWHIQGTCAL+GDGLYEGLDWL+ TLKEM
Sbjct: 121 ILVFANKQDMKGAMTPMEVCEGLGLFELKNRKWHIQGTCALRGDGLYEGLDWLSGTLKEM 180

Query: 181 RAAGYSSVGTSSF 193
           RAAGYSSVGTSSF
Sbjct: 181 RAAGYSSVGTSSF 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58220034|gb|AAW67545.1| ADP-ribosylation factor [Daucus carota]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/192 (94%), Positives = 188/192 (97%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MGQ FRKLFD FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN
Sbjct: 1   MGQVFRKLFDTFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           V+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAK EFQAIIKDPFMLNS+
Sbjct: 61  VVFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKAEFQAIIKDPFMLNSI 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           ILVFANKQDMKGAM+PMEVCEGLGL DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE+
Sbjct: 121 ILVFANKQDMKGAMSPMEVCEGLGLLDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEL 180

Query: 181 RAAGYSSVGTSS 192
           +AAGYSS+GTSS
Sbjct: 181 KAAGYSSIGTSS 192

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144915|ref|XP_002325461.1| predicted protein [Populus trichocarpa] gi|222862336|gb|EEE99842.1| predicted protein [Populus trichocarpa]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/193 (92%), Positives = 189/193 (97%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MGQAFRKLFD FFGN+EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN
Sbjct: 1   MGQAFRKLFDTFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           V+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG+AK+EFQ I+KDPFMLNS+
Sbjct: 61  VVFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGRAKEEFQTIVKDPFMLNSI 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           ILVFANKQDMKGAMTPMEVCEGLGLF+L+NRKWHIQGTCAL+GDGLYEGLDWL+ T KEM
Sbjct: 121 ILVFANKQDMKGAMTPMEVCEGLGLFELQNRKWHIQGTCALRGDGLYEGLDWLSGTFKEM 180

Query: 181 RAAGYSSVGTSSF 193
           RAAGYSSVGTSSF
Sbjct: 181 RAAGYSSVGTSSF 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451823|ref|XP_004143660.1| PREDICTED: ADP-ribosylation factor-like [Cucumis sativus]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/191 (95%), Positives = 186/191 (97%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MGQAFRKLFD FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN
Sbjct: 1   MGQAFRKLFDSFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           V+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI KAK EFQAII DPFMLNSV
Sbjct: 61  VVFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIVKAKTEFQAIINDPFMLNSV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           ILVFANKQDMKGAMTPMEVC+GLGLFDLK+RKWHIQGTCAL+GDGLYEGLDWLA TLKEM
Sbjct: 121 ILVFANKQDMKGAMTPMEVCQGLGLFDLKHRKWHIQGTCALRGDGLYEGLDWLAGTLKEM 180

Query: 181 RAAGYSSVGTS 191
           RAAGYSSVGTS
Sbjct: 181 RAAGYSSVGTS 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525399|ref|XP_004169705.1| PREDICTED: ADP-ribosylation factor-like [Cucumis sativus]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/191 (94%), Positives = 185/191 (96%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MGQAFRKLFD FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN
Sbjct: 1   MGQAFRKLFDSFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           V+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI KAK EFQAII DPFMLNSV
Sbjct: 61  VVFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIVKAKTEFQAIINDPFMLNSV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           ILVFANKQDMKGAMTPMEVC+GLGLFDLK+RKWHIQGTCAL+GDGL EGLDWLA TLKEM
Sbjct: 121 ILVFANKQDMKGAMTPMEVCQGLGLFDLKHRKWHIQGTCALRGDGLCEGLDWLAGTLKEM 180

Query: 181 RAAGYSSVGTS 191
           RAAGYSSVGTS
Sbjct: 181 RAAGYSSVGTS 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474237|ref|XP_003607403.1| ADP-ribosylation factor-like protein [Medicago truncatula] gi|355508458|gb|AES89600.1| ADP-ribosylation factor-like protein [Medicago truncatula]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/195 (92%), Positives = 187/195 (95%), Gaps = 2/195 (1%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MGQAFRKLFD FFGN+EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN
Sbjct: 1   MGQAFRKLFDSFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           VIFTVWDVGGQEKLR LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ II DPFMLNSV
Sbjct: 61  VIFTVWDVGGQEKLRTLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQTIINDPFMLNSV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           ILV ANKQD++GAMTP EVC+GLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL+STLKEM
Sbjct: 121 ILVLANKQDLRGAMTPREVCDGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLSSTLKEM 180

Query: 181 RAAGYSS--VGTSSF 193
           +AAGYSS  +GTSSF
Sbjct: 181 KAAGYSSLGLGTSSF 195

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807727|ref|XP_002871747.1| hypothetical protein ARALYDRAFT_488569 [Arabidopsis lyrata subsp. lyrata] gi|297317584|gb|EFH48006.1| hypothetical protein ARALYDRAFT_488569 [Arabidopsis lyrata subsp. lyrata]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/191 (91%), Positives = 186/191 (97%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MGQAFRKLFD FFGN EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN
Sbjct: 1   MGQAFRKLFDTFFGNQEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           V+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ IIKDPFMLNS+
Sbjct: 61  VMFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQEIIKDPFMLNSI 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           ILVFANKQDM+GAM+P EVCEGLGLFDLKNRKWHIQGTCAL+GDGLYEGLDWL+STLK++
Sbjct: 121 ILVFANKQDMRGAMSPREVCEGLGLFDLKNRKWHIQGTCALRGDGLYEGLDWLSSTLKDV 180

Query: 181 RAAGYSSVGTS 191
           +AAG++SVG S
Sbjct: 181 KAAGFTSVGPS 191

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237901|ref|NP_197208.1| ADP-ribosylation factor B1B [Arabidopsis thaliana] gi|9755707|emb|CAC01719.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gi|20260664|gb|AAM13230.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gi|21554981|gb|AAM63746.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gi|28059525|gb|AAO30066.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gi|332004995|gb|AED92378.1| ADP-ribosylation factor B1B [Arabidopsis thaliana]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/191 (91%), Positives = 186/191 (97%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MGQAFRKLFD FFGN EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN
Sbjct: 1   MGQAFRKLFDTFFGNQEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           V+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ IIKDPFMLNS+
Sbjct: 61  VMFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQEIIKDPFMLNSI 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           ILVFANKQDM+GAM+P EVCEGLGLFDLKNRKWHIQGTCAL+GDGLYEGLDWL+STLK++
Sbjct: 121 ILVFANKQDMRGAMSPREVCEGLGLFDLKNRKWHIQGTCALRGDGLYEGLDWLSSTLKDV 180

Query: 181 RAAGYSSVGTS 191
           +AAG++SVG S
Sbjct: 181 KAAGFTSVGHS 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2148141	192	ARFB1B "ADP-ribosylation facto	0.989	0.994	0.916	1.8e-94
TAIR|locus:2097725	192	ARFB1C "ADP-ribosylation facto	0.989	0.994	0.921	3.8e-94
FB|FBgn0010348	182	Arf79F "ADP ribosylation facto	0.922	0.978	0.623	2.1e-61
WB|WBGene00000182	181	arf-1.2 [Caenorhabditis elegan	0.922	0.983	0.629	4.3e-61
UNIPROTKB|Q10943	181	arf-1.2 "ADP-ribosylation fact	0.922	0.983	0.629	4.3e-61
UNIPROTKB|P84081	181	ARF2 "ADP-ribosylation factor	0.937	1.0	0.602	1.5e-60
MGI|MGI:99595	181	Arf2 "ADP-ribosylation factor	0.937	1.0	0.602	1.5e-60
RGD|621271	181	Arf2 "ADP-ribosylation factor	0.937	1.0	0.602	1.5e-60
UNIPROTKB|P84082	181	Arf2 "ADP-ribosylation factor	0.937	1.0	0.602	1.5e-60
UNIPROTKB|J9NWP6	181	LOC480487 "Uncharacterized pro	0.937	1.0	0.602	1.9e-60

TAIR|locus:2148141 ARFB1B "ADP-ribosylation factor B1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 175/191 (91%), Positives = 186/191 (97%)

Query:     1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
             MGQAFRKLFD FFGN EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN
Sbjct:     1 MGQAFRKLFDTFFGNQEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60

Query:    61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
             V+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ IIKDPFMLNS+
Sbjct:    61 VMFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQEIIKDPFMLNSI 120

Query:   121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
             ILVFANKQDM+GAM+P EVCEGLGLFDLKNRKWHIQGTCAL+GDGLYEGLDWL+STLK++
Sbjct:   121 ILVFANKQDMRGAMSPREVCEGLGLFDLKNRKWHIQGTCALRGDGLYEGLDWLSSTLKDV 180

Query:   181 RAAGYSSVGTS 191
             +AAG++SVG S
Sbjct:   181 KAAGFTSVGHS 191

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2097725 ARFB1C "ADP-ribosylation factor B1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 176/191 (92%), Positives = 184/191 (96%)

Query:     1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
             MGQ FRKLFD FFGN EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN
Sbjct:     1 MGQTFRKLFDTFFGNQEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60

Query:    61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
             VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ II+DPFMLNSV
Sbjct:    61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQDIIRDPFMLNSV 120

Query:   121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
             ILVFANKQDM+GAM+P EVCEGLGL DLKNRKWHIQGTCAL+GDGLYEGLDWL++TLKE+
Sbjct:   121 ILVFANKQDMRGAMSPREVCEGLGLLDLKNRKWHIQGTCALQGDGLYEGLDWLSATLKEV 180

Query:   181 RAAGYSSVGTS 191
             +AAGYSSVG S
Sbjct:   181 KAAGYSSVGPS 191

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

FB|FBgn0010348 Arf79F "ADP ribosylation factor at 79F" [Drosophila melanogaster (taxid:7227)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 111/178 (62%), Positives = 142/178 (79%)

Query:     1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
             MG  F  LF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct:     1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
             + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRERIG+A++E   ++ +  + ++V
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAV 120

Query:   121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
             +L+FANKQD+  AM   E+ + LGL  L+NR W+IQ TCA  GDGLYEGLDWL++ LK
Sbjct:   121 LLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 178

GO:0006471 "protein ADP-ribosylation" evidence=ISS;NAS

GO:0005525 "GTP binding" evidence=ISS;NAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0048488 "synaptic vesicle endocytosis" evidence=TAS

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0003924 "GTPase activity" evidence=ISS

GO:0010883 "regulation of lipid storage" evidence=IDA

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0048749 "compound eye development" evidence=IMP

GO:0032011 "ARF protein signal transduction" evidence=IGI

GO:0005795 "Golgi stack" evidence=IDA

WB|WBGene00000182 arf-1.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 112/178 (62%), Positives = 142/178 (79%)

Query:     1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
             MG  F  LF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct:     1 MGNVFGSLFKGLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
             + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+G+A++E   ++ +  + ++V
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAV 120

Query:   121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
             +LVFANKQD+  AM   EV + LGL  L+NR W+IQ TCA  GDGLYEGLDWL++ LK
Sbjct:   121 LLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLK 178

GO:0006886 "intracellular protein transport" evidence=IEA;IMP

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000003 "reproduction" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0048599 "oocyte development" evidence=IMP

GO:0048259 "regulation of receptor-mediated endocytosis" evidence=IGI

UNIPROTKB|Q10943 arf-1.2 "ADP-ribosylation factor 1-like 2" [Caenorhabditis elegans (taxid:6239)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 112/178 (62%), Positives = 142/178 (79%)

Query:     1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
             MG  F  LF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct:     1 MGNVFGSLFKGLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
             + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+G+A++E   ++ +  + ++V
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAV 120

Query:   121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
             +LVFANKQD+  AM   EV + LGL  L+NR W+IQ TCA  GDGLYEGLDWL++ LK
Sbjct:   121 LLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLK 178

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0007276 "gamete generation" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|P84081 ARF2 "ADP-ribosylation factor 2" [Bos taurus (taxid:9913)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 109/181 (60%), Positives = 141/181 (77%)

Query:     1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
             MG  F KLF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct:     1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
             + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120

Query:   121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
             +LVF NKQD+  AM   E+ + LGL  L+ R W+IQ TCA  GDGLYEGLDWL++ LK  
Sbjct:   121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180

Query:   181 R 181
             +
Sbjct:   181 K 181

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

MGI|MGI:99595 Arf2 "ADP-ribosylation factor 2" [Mus musculus (taxid:10090)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 109/181 (60%), Positives = 141/181 (77%)

Query:     1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
             MG  F KLF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct:     1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
             + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120

Query:   121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
             +LVF NKQD+  AM   E+ + LGL  L+ R W+IQ TCA  GDGLYEGLDWL++ LK  
Sbjct:   121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180

Query:   181 R 181
             +
Sbjct:   181 K 181

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA

RGD|621271 Arf2 "ADP-ribosylation factor 2" [Rattus norvegicus (taxid:10116)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 109/181 (60%), Positives = 141/181 (77%)

Query:     1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
             MG  F KLF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct:     1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
             + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120

Query:   121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
             +LVF NKQD+  AM   E+ + LGL  L+ R W+IQ TCA  GDGLYEGLDWL++ LK  
Sbjct:   121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180

Query:   181 R 181
             +
Sbjct:   181 K 181

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|P84082 Arf2 "ADP-ribosylation factor 2" [Rattus norvegicus (taxid:10116)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 109/181 (60%), Positives = 141/181 (77%)

Query:     1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
             MG  F KLF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct:     1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
             + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120

Query:   121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
             +LVF NKQD+  AM   E+ + LGL  L+ R W+IQ TCA  GDGLYEGLDWL++ LK  
Sbjct:   121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180

Query:   181 R 181
             +
Sbjct:   181 K 181

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|J9NWP6 LOC480487 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 109/181 (60%), Positives = 141/181 (77%)

Query:     1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
             MG  F KLF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct:     1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
             + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120

Query:   121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
             +LVF NKQD+  AM   E+ + LGL  L+ R W+IQ TCA  GDGLYEGLDWL++ LK  
Sbjct:   121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKTQ 180

Query:   181 R 181
             +
Sbjct:   181 K 181

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O48920	ARF_VIGUN	No assigned EC number	0.5875	0.9170	0.9779	N/A	no
P51644	ARF4_XENLA	No assigned EC number	0.5921	0.9274	0.9944	N/A	no
O00909	ARF1_DICDI	No assigned EC number	0.6271	0.9170	0.9725	yes	no
P51643	ARF1_XENLA	No assigned EC number	0.5966	0.9378	1.0	N/A	no
P91924	ARF_DUGJA	No assigned EC number	0.6235	0.9222	0.9726	N/A	no
Q61LA8	ARF12_CAEBR	No assigned EC number	0.6292	0.9222	0.9834	N/A	no
Q7RVM2	ARF_NEUCR	No assigned EC number	0.6114	0.9067	0.9459	N/A	no
P61210	ARF1_LOCMI	No assigned EC number	0.6235	0.9222	0.9780	N/A	no
P84082	ARF2_RAT	No assigned EC number	0.6022	0.9378	1.0	yes	no
Q10943	ARF12_CAEEL	No assigned EC number	0.6292	0.9222	0.9834	yes	no
P84081	ARF2_BOVIN	No assigned EC number	0.6022	0.9378	1.0	yes	no
Q5R5P7	ARF3_PONAB	No assigned EC number	0.5966	0.9378	1.0	yes	no
P84080	ARF1_BOVIN	No assigned EC number	0.5966	0.9378	1.0	yes	no
P22274	ARF_CANAL	No assigned EC number	0.5885	0.9067	0.9776	N/A	no
P51822	ARF1_DAUCA	No assigned EC number	0.5932	0.9170	0.9779	N/A	no
P0CM16	ARF_CRYNJ	No assigned EC number	0.5955	0.9222	0.9780	yes	no
P51824	ARF1_SOLTU	No assigned EC number	0.5769	0.9430	0.9238	N/A	no
P84077	ARF1_HUMAN	No assigned EC number	0.5966	0.9378	1.0	yes	no
P36579	ARF1_SCHPO	No assigned EC number	0.6011	0.9222	0.9888	yes	no
P84079	ARF1_RAT	No assigned EC number	0.5966	0.9378	1.0	yes	no
P84078	ARF1_MOUSE	No assigned EC number	0.5966	0.9378	1.0	yes	no
P19146	ARF2_YEAST	No assigned EC number	0.5955	0.9222	0.9834	yes	no
P0CM17	ARF_CRYNB	No assigned EC number	0.5955	0.9222	0.9780	N/A	no
P51821	ARF1_CHLRE	No assigned EC number	0.5988	0.9170	0.9779	N/A	no
P61204	ARF3_HUMAN	No assigned EC number	0.5966	0.9378	1.0	yes	no
P61207	ARF3_TAKRU	No assigned EC number	0.5966	0.9378	1.0	N/A	no
Q75A26	ARF_ASHGO	No assigned EC number	0.6011	0.9222	0.9834	yes	no
Q8BSL7	ARF2_MOUSE	No assigned EC number	0.6022	0.9378	1.0	yes	no
P61209	ARF1_DROME	No assigned EC number	0.6235	0.9222	0.9780	yes	no
P49076	ARF_MAIZE	No assigned EC number	0.5988	0.9170	0.9779	N/A	no
Q4R5P2	ARF1_MACFA	No assigned EC number	0.5966	0.9378	1.0	N/A	no
P34727	ARF_AJECA	No assigned EC number	0.6145	0.9274	0.9781	N/A	no
O48649	ARF1_SALBA	No assigned EC number	0.5932	0.9170	0.9779	N/A	no
P11076	ARF1_YEAST	No assigned EC number	0.5955	0.9222	0.9834	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	1e-107
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	2e-94
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	2e-93
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-91
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	6e-91
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	1e-88
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	7e-88
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	1e-85
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	4e-85
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	3e-64
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	4e-64
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	2e-63
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	7e-60
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	9e-59
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	2e-51
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	9e-44
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	1e-40
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	6e-37
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	7e-33
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	4e-31
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	5e-25
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-24
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	4e-19
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	7e-16
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	5e-12
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	9e-12
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	1e-10
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-09
smart00275	342	smart00275, G_alpha, G protein alpha subunit	4e-09
cd00066	315	cd00066, G-alpha, Alpha subunit of G proteins (gua	1e-08
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-08
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	3e-07
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	5e-07
pfam00071	162	pfam00071, Ras, Ras family	1e-06
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	3e-06
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	4e-06
pfam09439	181	pfam09439, SRPRB, Signal recognition particle rece	1e-05
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-05
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-05
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-05
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-05
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	3e-05
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	6e-05
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	7e-05
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	8e-05
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	9e-05
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	1e-04
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	1e-04
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-04
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	4e-04
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	6e-04
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	7e-04
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	9e-04
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	0.001
pfam01591	219	pfam01591, 6PF2K, 6-phosphofructo-2-kinase	0.001
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	0.001
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	0.001
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	0.002
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	0.002
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	0.003
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	0.004
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	0.004
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	0.004

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score =  303 bits (779), Expect = e-107
 Identities = 104/159 (65%), Positives = 134/159 (84%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
           MR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPL
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 78  WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
           WRHYF NT GLI+VVDS DRERIG+A++E Q ++ +  + ++V+LVFANKQD+  AM+  
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAA 120

Query: 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 176
           EV + LGL  L+NR W+IQ TCA  GDGLYEGLDWL++ 
Sbjct: 121 EVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNN 159

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score =  272 bits (697), Expect = 2e-94
 Identities = 106/178 (59%), Positives = 139/178 (78%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG      F   FG  E+R++M+GLDAAGKTTILYKL +GEV++T+PTIGFNVE V+YKN
Sbjct: 1   MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FT+WDVGGQ+KLRPLWRHY+ NT+GLI+VVDS DRERIG A++E + ++ +  + ++V
Sbjct: 61  LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           +LVFANKQD+  AM+  EV E LGL  ++ R W+IQG CA    GLYEGLDWL++ +K
Sbjct: 121 LLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIK 178

Length = 182

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  269 bits (689), Expect = 2e-93
 Identities = 102/174 (58%), Positives = 135/174 (77%), Gaps = 1/174 (0%)

Query: 5   FRKLFDVFFG-NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIF 63
           F  +    FG N EMR+++LGLD AGKTTILYKL +GE+++T+PTIGFNVE V YKNV F
Sbjct: 1   FLSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKF 60

Query: 64  TVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILV 123
           TVWDVGGQE LRPLWR+YF NTD +I+VVDS DR+RI +AK+E  A++ +  + ++ +L+
Sbjct: 61  TVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLI 120

Query: 124 FANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
            ANKQD+ GAM+  E+ E LGL +LK+R W IQG  A+ G+GL EGLDWL++ +
Sbjct: 121 LANKQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI 174

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score =  264 bits (677), Expect = 1e-91
 Identities = 107/174 (61%), Positives = 137/174 (78%)

Query: 5   FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFT 64
             KLF   FGN EMR++M+GLDAAGKTTILYKL +GE ++T+PTIGFNVE V YKN+ FT
Sbjct: 1   MGKLFSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFT 60

Query: 65  VWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF 124
           VWDVGGQ+K+RPLWRHY+ NT GLI+VVDS DR+RI +A++E   ++ +  + ++VILVF
Sbjct: 61  VWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVF 120

Query: 125 ANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           ANKQD+  AM   E+ E LGL  +++R W+IQ TCA  GDGLYEGL WL++ LK
Sbjct: 121 ANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNLK 174

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score =  262 bits (672), Expect = 6e-91
 Identities = 98/157 (62%), Positives = 124/157 (78%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
           R++MLGLD AGKTTILYKL +GEV++T+PTIGFNVE V+YKNV FTVWDVGGQ+K+RPLW
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60

Query: 79  RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
           +HY+ NTDGLI+VVDS DRERI +AK E   ++ +  +  + +L+ ANKQD+ GA+T  E
Sbjct: 61  KHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESE 120

Query: 139 VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 175
           + E LGL  +K R+WHIQ   A+ GDGL EGLDWL  
Sbjct: 121 LIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIE 157

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score =  257 bits (658), Expect = 1e-88
 Identities = 103/163 (63%), Positives = 131/163 (80%)

Query: 13  FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQE 72
           FGN EMR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+
Sbjct: 5   FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQD 64

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           K+RPLWRHY+  T GLI+VVDS DR+RI +A+QE   II D  M ++++LVFANKQD+  
Sbjct: 65  KIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 175
           AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL+S
Sbjct: 125 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score =  255 bits (653), Expect = 7e-88
 Identities = 105/177 (59%), Positives = 139/177 (78%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG +F KLF   F   EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DR+R+ +A+ E   ++ +  + ++V
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
           +LVFANKQD+  AM   E+ + LGL  L+ R W+IQ TCA  G+GLYEGLDWL++ +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177

Length = 181

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score =  249 bits (637), Expect = 1e-85
 Identities = 93/158 (58%), Positives = 125/158 (79%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
           R+++LGLD AGKTTILY+L +GEV++T+PTIGFNVE V YKN+ F VWD+GGQ  +RP W
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 60

Query: 79  RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
           R Y++NTD +IYVVDS DR+R+G +K E  A++++  + ++V+LVFANKQDM GA++  E
Sbjct: 61  RCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAE 120

Query: 139 VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 176
           V E LGL +LK+R W I  T A KG+GL EG+DWL +T
Sbjct: 121 VAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLVNT 158

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score =  248 bits (635), Expect = 4e-85
 Identities = 92/174 (52%), Positives = 123/174 (70%)

Query: 3   QAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVI 62
             F  L+ +FF   E +V+++GLD AGKTTILY+  +GEV+ T PTIG NVE++ YKN+ 
Sbjct: 1   LLFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIR 60

Query: 63  FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL 122
           F +WD+GGQE LR  W  Y+ NTD +I V+DS DRER+   K+E   ++    +  +V+L
Sbjct: 61  FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLL 120

Query: 123 VFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 176
           V ANKQD+KGAMTP E+ E LGL  +++  WHIQG CAL G+GL EGLDW+AS 
Sbjct: 121 VLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIASR 174

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score =  195 bits (497), Expect = 3e-64
 Identities = 77/159 (48%), Positives = 111/159 (69%), Gaps = 2/159 (1%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFNVEKVQYKNVIFTVWDVGGQEKLR 75
           EMR++MLGLD AGKTTIL K + GE +ST+ PT+GFN++ ++Y      +WDVGGQ+ LR
Sbjct: 14  EMRILMLGLDNAGKTTILKKFN-GEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSLR 72

Query: 76  PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT 135
             WR+YF +TD LI+VVDS DR R+   K+E Q ++ +  +  + +L+FANKQD+ GA++
Sbjct: 73  SYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGALS 132

Query: 136 PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174
           P E+ E L L  +K+  W I G  A+ G+ L +G+DWL 
Sbjct: 133 PEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLV 171

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score =  194 bits (496), Expect = 4e-64
 Identities = 76/162 (46%), Positives = 105/162 (64%)

Query: 15  NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKL 74
             E+R+++LGLD AGKTTIL +L   ++    PT GFN++ VQ       VWD+GGQ K+
Sbjct: 13  RQEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNVWDIGGQRKI 72

Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134
           RP WR+YF NTD LIYV+DS DR+R  +A QE   ++++  +    +LVFANKQD+  A 
Sbjct: 73  RPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLTAA 132

Query: 135 TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 176
              EV E L L D+++R WHIQ   A  G+GL EG++W+   
Sbjct: 133 PAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWVCKN 174

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score =  192 bits (490), Expect = 2e-63
 Identities = 75/162 (46%), Positives = 113/162 (69%), Gaps = 8/162 (4%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRPL 77
           +V++LGLD+AGK+T+LYKL   E+++T+PT+GFNVE +Q  K++  TVWDVGGQEK+R +
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60

Query: 78  WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
           W+ Y  NTDGL+YVVDS D  R+ ++++E + I+K+  +    +++ ANKQD+ GA+T  
Sbjct: 61  WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120

Query: 138 EVCEGLGLFDLK----NRKWHIQGTCALKGDGLYEGLDWLAS 175
           E+      F LK    +R W++Q   A+ G+GL E    LAS
Sbjct: 121 EITR---RFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score =  184 bits (469), Expect = 7e-60
 Identities = 81/162 (50%), Positives = 107/162 (66%), Gaps = 6/162 (3%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY-----KNVIFTVWDVGGQE 72
           + +VMLGLD+AGKTT+LY+L   E ++TVPT GFN EK++      K V F  WDVGGQE
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQE 63

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           KLRPLW+ Y   TDG+++VVDS+D ER+ +AK E   I K        +LV ANKQD+  
Sbjct: 64  KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPN 123

Query: 133 AMTPMEVCEGLGLFDLKN-RKWHIQGTCALKGDGLYEGLDWL 173
           A+   EV + L L +L +   WH+Q  CA+ G+GL EGL+ L
Sbjct: 124 ALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKL 165

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score =  181 bits (460), Expect = 9e-59
 Identities = 86/167 (51%), Positives = 120/167 (71%), Gaps = 4/167 (2%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
           RVV LGLD AGKTTIL+KL   E +  +PTIGFNVE V+YKN+ FT+WDVGG+ KLRPLW
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 60

Query: 79  RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
           +HY+ NT  +++V+DS  R+R+ +A  E   ++ +  + ++++L+FANKQD+ GA++  E
Sbjct: 61  KHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 120

Query: 139 VCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAG 184
           + E L L  L   R W+IQG  A  G GLYEGLDWL+   +++ AAG
Sbjct: 121 MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLS---RQLVAAG 164

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score =  162 bits (411), Expect = 2e-51
 Identities = 68/161 (42%), Positives = 104/161 (64%), Gaps = 4/161 (2%)

Query: 20  VVMLGLDAAGKTTILYKLHIGEVLST--VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
           +++LGLD +GKTTI+ +L      S   VPT+GFNVE  +  N+ FT +D+ GQ K R L
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGL 61

Query: 78  WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV--ILVFANKQDMKGAMT 135
           W HY+ N  G+I+V+DS DR R+  AK E + ++  P + +    IL +ANK D+  A+T
Sbjct: 62  WEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALT 121

Query: 136 PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 176
            +++ + L L ++K++ WHI  + AL G+GL EG+DWL + 
Sbjct: 122 AVKITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWLQAQ 162

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score =  143 bits (364), Expect = 9e-44
 Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 12/179 (6%)

Query: 8   LFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWD 67
           L  +     E ++V LGLD AGKTT+L+ L    +   VPT+    E++   NV FT +D
Sbjct: 10  LSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNVKFTTFD 69

Query: 68  VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
           +GG E+ R +W+ YF   DG++++VD+ D ER  ++K+E  +++ D  + N  IL+  NK
Sbjct: 70  LGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNK 129

Query: 128 QDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 174
            D  GA++  E+ E LGL+                R   +     +K  G  EG  WL+
Sbjct: 130 IDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYGEGFRWLS 188

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score =  135 bits (341), Expect = 1e-40
 Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 16/167 (9%)

Query: 20  VVMLGLDAAGKTTILYKLHIGEVLST--------VPTIGFNVEKVQYKNVIFTVWDVGGQ 71
           V++LGLD AGKTT L +       +          PT+G N+  ++        WD+GGQ
Sbjct: 2   VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQ 61

Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
           E+LR LW  Y+  + G+IYV+DS DRER  ++K  F+ +I +  +    +LV ANKQD+ 
Sbjct: 62  EELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLP 121

Query: 132 GAMTPMEVCEGLGLFDLKNRKWH-----IQGTCALKGDGLYEGLDWL 173
            A++  E+ E   +FD            +Q   AL+G+G+ EG++WL
Sbjct: 122 DALSVAEIKE---VFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWL 165

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score =  125 bits (316), Expect = 6e-37
 Identities = 53/155 (34%), Positives = 88/155 (56%), Gaps = 1/155 (0%)

Query: 20  VVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
           + ++GL  +GKTT++  +  G+    T+PT+GFN+ KV   NV   VWD+GGQ + R +W
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMW 61

Query: 79  RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
             Y    + ++YVVD+ DRE++  AK E   +++ P +    +LV  NK D+ GA++  E
Sbjct: 62  ERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDE 121

Query: 139 VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
           + E + L  + +R+       A +   +   LDWL
Sbjct: 122 LIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWL 156

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score =  115 bits (289), Expect = 7e-33
 Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 6/142 (4%)

Query: 20  VVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
           +++LGLD AGKT++L+ L     L S VPT GFN   +  ++ I  + ++GG + LR  W
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYW 61

Query: 79  RHYFNNTDGLIYVVDSLDRERIGKAKQEF-QAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
           + Y + + GLI+VVDS D ER+  A+QE  Q +   P +    ++V ANKQD+  A +  
Sbjct: 62  KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDL---PLVVLANKQDLPAARSVQ 118

Query: 138 EVCEGLGLFDLKN-RKWHIQGT 158
           E+ + L L  +   R+W +QGT
Sbjct: 119 EIHKELELEPIARGRRWILQGT 140

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score =  110 bits (277), Expect = 4e-31
 Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 9/163 (5%)

Query: 20  VVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWR 79
           ++ +GLD AGKTT++  L         PT+GF   K++       ++D+GG    R +W 
Sbjct: 2   LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61

Query: 80  HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV 139
           +Y+    GL++VVDS D +R+ + K+  + +++ P +    ILV ANKQD K A+   +V
Sbjct: 62  NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121

Query: 140 CEGLGLFDLKNRK---WHIQGTCALKGDG------LYEGLDWL 173
            E L L  L N      HI+   A++G G      + EGL WL
Sbjct: 122 IEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score = 95.4 bits (237), Expect = 5e-25
 Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 7/167 (4%)

Query: 15  NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKL 74
           N   +++ LGLD AGKTT+L+ L    +    PT     E++   N+ FT +D+GG ++ 
Sbjct: 15  NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQA 74

Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134
           R LW+ YF   +G++Y+VD+ D+ER  ++K+E  A++ D  +     L+  NK D   A 
Sbjct: 75  RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA 134

Query: 135 TPMEVCEGLGLFDLKNRKWHIQG------TCAL-KGDGLYEGLDWLA 174
           +  E+   LGL +    K  +         C++ +  G  EG  WL+
Sbjct: 135 SEDELRYALGLTNTTTGKGKVGVRPVEVFMCSVVRRMGYGEGFKWLS 181

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 95.4 bits (237), Expect = 1e-24
 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 5/132 (3%)

Query: 13  FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNV----EKVQYKNVIFTVWD 67
               E ++V+LG    GKTT+L +L   E      PTIG        +   +N+   +WD
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 68  VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
             GQE+ R L   Y+   +G++ V DS  RE   +  +E+   +++    +  IL+  NK
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 128 QDMKGAMTPMEV 139
            D+    +  E 
Sbjct: 121 IDLFDEQSSSEE 132

Length = 219

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 79.7 bits (197), Expect = 4e-19
 Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 13/130 (10%)

Query: 17  EMRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFN--VEKVQYKNVIFTV--WDVG 69
           E+++V++G    GK+T+L +L    I       P    N     ++     +     D  
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISIT-EYKPGTTRNYVTTVIEEDGKTYKFNLLDTA 59

Query: 70  GQEKLRPLWRHYFNNTDGLIYVVDS---LDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
           GQE    + R Y+   +  + V D    +        KQ     I         I++  N
Sbjct: 60  GQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTK--EIIHHAESGVPIILVGN 117

Query: 127 KQDMKGAMTP 136
           K D++ A   
Sbjct: 118 KIDLRDAKLK 127

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 70.9 bits (174), Expect = 7e-16
 Identities = 37/166 (22%), Positives = 58/166 (34%), Gaps = 16/166 (9%)

Query: 21  VMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQY--KNVIFTVWDVGGQEKL 74
           V++G    GK+++L  L  GEV         T   +V   +     V   + D  G ++ 
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60

Query: 75  RPLW-----RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
             L      R      D ++ VVDS DRE    AK      ++        I++  NK D
Sbjct: 61  GGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKE---GIPIILVGNKID 117

Query: 130 MKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 175
           +       E          K     +    A  G+G+ E  + L  
Sbjct: 118 LLEEREVEE--LLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score = 63.0 bits (154), Expect = 5e-12
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 42  VLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV-----DSLD 96
           + + V T G    K  +K + F ++DVGGQ   R  W H F +   +I+VV     D + 
Sbjct: 149 LRARVKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVL 208

Query: 97  RE-----RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
            E     R+ ++   F+ I   P+  N+ I++F NK+D+
Sbjct: 209 YEDDSTNRLEESLNLFEEICNSPWFKNTPIILFLNKKDL 247

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 60.8 bits (148), Expect = 9e-12
 Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 15/121 (12%)

Query: 20  VVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVI----FTVWDVGGQEKLR 75
           V++LG   +GKT +  KL  G+V STV +I  NV    Y N       T+ DV G EKLR
Sbjct: 3   VLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNV-ASFYSNSSKGKKLTLVDVPGHEKLR 61

Query: 76  P-LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV------ILVFANKQ 128
             L  +   +   +++VVDS   ++  +   EF   + D             IL+  NKQ
Sbjct: 62  DKLLEYLKASLKAIVFVVDSATFQKNIRDVAEF---LYDILTDLEKIKNKIPILIACNKQ 118

Query: 129 D 129
           D
Sbjct: 119 D 119

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 23/176 (13%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVP-------------TIGFNVEKVQYKNVIF 63
           E ++V++G   AGKTT +  L    ++ T               T+  +   ++      
Sbjct: 10  ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-T 68

Query: 64  TVWDVG--GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI 121
            V   G  GQE+ + +W        G I +VDS             + I          +
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR----PITFHAEEIIDFLTSRNPIPV 124

Query: 122 LVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
           +V  NKQD+  A+ P ++ E      L+     +    A +G+G  + LD L    
Sbjct: 125 VVAINKQDLFDALPPEKIRE---ALKLELLSVPVIEIDATEGEGARDQLDVLLLKD 177

Length = 187

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 53.6 bits (130), Expect = 2e-09
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 14/122 (11%)

Query: 18  MRVVMLGLDAA-GKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQ 71
            ++V++G D+  GKT++L +    +   +   TIG  F  + ++   K V   +WD  GQ
Sbjct: 1   FKIVLIG-DSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQ 59

Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 128
           E+ R +   Y+    G I V D  +R   E + K   E +         N  I++  NK 
Sbjct: 60  ERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPP----NIPIILVGNKS 115

Query: 129 DM 130
           D+
Sbjct: 116 DL 117

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 42  VLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV-----DSLD 96
           + S VPT G        K + F ++DVGGQ   R  W H F+N   +I+ V     D + 
Sbjct: 165 LRSRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVL 224

Query: 97  RE-----RIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
            E     R+ ++   F++I    +  N+ I++F NK D
Sbjct: 225 EEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

>gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding)

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 46  VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV-----DSLDRE-- 98
           V T G        KN+ F ++DVGGQ   R  W H F +   +I+VV     D +  E  
Sbjct: 146 VKTTGIIETDFSIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDE 205

Query: 99  ---RIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
              R+ ++ + F +I    +  N+ I++F NK+D
Sbjct: 206 SVNRMQESLKLFDSICNSRWFANTSIILFLNKKD 239

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 52.4 bits (125), Expect = 1e-08
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIG--FNVEK--VQYKNVIFTVWDVGGQEKL 74
          +++++G    GK+++L       V    PTIG  F +++  V  K +  T+WD  GQE+ 
Sbjct: 16 KILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF 75

Query: 75 RPLWRHYFNNTDGLIYVVDSLDRE 98
          R L   Y+ N  G+I V D   RE
Sbjct: 76 RTLTSSYYRNAQGIILVYDVTRRE 99

Length = 211

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIG----EVLSTVPTIGFNVEKVQY--KNVIFTVWDVGGQ 71
            +VV+LG    GKT+++ +        +  ST     F  + V    K +   +WD  GQ
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQA-SFFQKTVNIGGKRIDLAIWDTAGQ 59

Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFML-NSVILVFA-NKQD 129
           E+   L   Y+ + DG I V D  D +   K K+  + + +   M  N++ LV   NK D
Sbjct: 60  ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQ---MRGNNISLVIVGNKID 116

Query: 130 MK 131
           ++
Sbjct: 117 LE 118

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           ++V+LG  + GK++I+ +    E       TIG  F  + V      V F +WD  GQE+
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAK---QEFQAIIKDPFMLNSVILVFANKQDM 130
            R L   Y+      I V D    E   KAK   +E Q         N VI +  NK D+
Sbjct: 63  YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPP----NIVIALAGNKADL 118

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 12/121 (9%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           ++V++G    GK+++L +    +     +PTIG  F  + ++   K V   +WD  GQE+
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
            R L   Y+    G + V D   R   E + K  +E      +       I++  NK D+
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENV----PIVLVGNKCDL 116

Query: 131 K 131
           +
Sbjct: 117 E 117

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 11/134 (8%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           +++++G    GK+++L +         +  TIG  F V+ V    K V   +WD  GQE+
Sbjct: 2   KILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQER 61

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS--VILVFANKQDMK 131
            R L   Y+    G+I V D   R+           +  D +  N   V ++  NK D +
Sbjct: 62  FRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNEL--DTYSTNPDAVKMLVGNKIDKE 119

Query: 132 GAMTPMEVCEGLGL 145
                 E  EG   
Sbjct: 120 NREVTRE--EGQKF 131

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 18/121 (14%)

Query: 21  VMLGLDAAGKTTILYKLHIGEVLSTVP-TIGFN----VEKVQYKNVIFTVWDVGGQEKLR 75
           +++G    GK+ +L++    +       TIG      V  V  K+V   +WD  GQE+ R
Sbjct: 4   LIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQERFR 63

Query: 76  PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI---IKDPFMLNS---VILVFANKQD 129
            + R Y+    G + V D   R       + F A+   + D   L S   VI++  NK+D
Sbjct: 64  SVTRSYYRGAAGALLVYDITSR-------ESFNALTNWLTDARTLASPDIVIILVGNKKD 116

Query: 130 M 130
           +
Sbjct: 117 L 117

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 8/130 (6%)

Query: 15  NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV-EKVQ-YKNVIFTVWDVGGQE 72
           +S+  V++ GL  +GKT++   L  G V  TV +   +   K   +K   FT+ D  G  
Sbjct: 1   SSQPAVIIAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKYMLHKGFSFTLIDFPGHV 60

Query: 73  KLRP--LWRH-YFNNTDGLIYVVDS-LDRERIGKAKQEFQAIIKDPFMLNSV--ILVFAN 126
           KLR   L      ++  G+++VVDS    + +    +    I+    +L +   IL+  N
Sbjct: 61  KLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACN 120

Query: 127 KQDMKGAMTP 136
           KQ+   A  P
Sbjct: 121 KQESFTARPP 130

The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQE 72
            +++++G    GK+++L +   G+       TIG  F  + ++   K V   +WD  GQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
           + R +   Y+    G + V D  +R   E +    +E +     P   N VI++  NK D
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELR-EYASP---NVVIMLVGNKSD 116

Query: 130 MK 131
           ++
Sbjct: 117 LE 118

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 19 RVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIGFNVEKVQYKN----VIFTVWDVGGQEK 73
          ++V++G    GKTT + +   GE     V T+G  V  + +      + F VWD  GQEK
Sbjct: 2  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61

Query: 74 LRPLWRHYFNNTDGLIYVVDSLDRE 98
             L   Y+      I + D   R 
Sbjct: 62 FGGLRDGYYIQGQCAIIMFDVTSRV 86

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 10/120 (8%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVE------KVQYKNVIFTVWDVGGQ 71
           ++V++G    GK+ IL +    E  L +  TIG  VE      +V+ K V   +WD  GQ
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIG--VEFATRTLQVEGKTVKAQIWDTAGQ 71

Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
           E+ R +   Y+    G + V D   R+      Q +   ++D    N VI++  NK D+ 
Sbjct: 72  ERYRAITSAYYRGAVGALLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLN 130

Length = 216

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 44  STVPTIG----FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER 99
           S + TIG        ++  K V   +WD  GQE+ R +   Y+    G+I V D  D+E 
Sbjct: 30  SYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES 89

Query: 100 IGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMK 131
               KQ  Q I  D +   +V  L+  NK D+ 
Sbjct: 90  FNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 120

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 6/118 (5%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLST-VPTIG--FNVEKV--QYKNVIFTVWDVGGQEK 73
           +++++G  + GKT+ L++       S  V T+G  F V+ V    K +   +WD  GQE+
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
            R +   Y+    G I + D  + E    A Q++   IK     N+ +++  NK DM+
Sbjct: 63  YRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVILVGNKCDME 119

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 23/129 (17%)

Query: 19  RVVMLGLDAAGKTT----ILYKLHIGEVLSTVPTIGFNVEKVQYK---NVIFTVWDVGGQ 71
           +V+++GL  +GK++    I       + L    TI  +VE+   +   N+   +WD  GQ
Sbjct: 1   KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATI--DVEQSHVRFLGNLTLNLWDCPGQ 58

Query: 72  EKLRPLWRHY-----FNNTDGLIYVVDSLDRERIGKAKQEFQAIIK-----DPFMLNSVI 121
           +     +        F+N   LIYV D   RE   +       II+      P   N+ +
Sbjct: 59  DDFMENYLTRQKEHIFSNVGVLIYVFDVESREYE-EDLATLVKIIEALYQYSP---NAKV 114

Query: 122 LVFANKQDM 130
            V  +K D+
Sbjct: 115 FVLIHKMDL 123

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 18  MRVVMLGLDAAGKTTIL--YKLHIGEVLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQ 71
           ++VVMLG ++ GKT+++  Y  H   V     TIG  F  +++    + V   +WD  G 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAK 104
           E+   + R Y+      I   D  D     +AK
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAK 93

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEV--LSTVPTIGFNVEKVQYKN-----VIFTVWDVG 69
          E +++++G    GKT++  +L IGE        T G NV+  +        +   VWD G
Sbjct: 1  EAKLMLVGQGGVGKTSLCKQL-IGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFG 59

Query: 70 GQE 72
          GQE
Sbjct: 60 GQE 62

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNV-EK---VQYKNVIFTVWDVGGQEK 73
          +++++G    GKT + Y+   G     T  TIG +  E+   +  + +   +WD  GQE+
Sbjct: 4  KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 74 LR-PLWRHYFNNTDGLIYVVD 93
           R  + +HY+ N   +++V D
Sbjct: 64 FRKSMVQHYYRNVHAVVFVYD 84

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTV--PTIGFN-----VEKVQYKNVIFTVWDVGGQ 71
          R++++G    GK+++L +   G   + V  PT+G +     +E      +   +WD  GQ
Sbjct: 4  RLIVIGDSTVGKSSLLKRFTEGR-FAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ 62

Query: 72 EKLRPLWRHYFNNTDGLIYVVDSLDRE 98
          E+ R + R Y+ N+ G++ V D  +RE
Sbjct: 63 ERFRSITRSYYRNSVGVLLVFDITNRE 89

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 19 RVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIGFNVE---KVQYKNVIFTVWDVGGQ--- 71
          ++V++G  A GKT++LY   +GE      PT+  N     +V  K V   +WD  GQ   
Sbjct: 3  KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62

Query: 72 EKLRPL 77
          E+LRPL
Sbjct: 63 ERLRPL 68

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 19 RVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVEKVQYKNVI-----FTVWDVGGQE 72
          +VV++G   +GK+++L +L  GE     +   G  +  V    V        +WD GG+E
Sbjct: 1  KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTL-AVDTLEVDGDTGLLNIWDFGGRE 59

Query: 73 KLRPLWRHYFNNTDGLIYVVDSLDRE 98
          +L+     +    D ++ V D  DRE
Sbjct: 60 ELKFEHIIFMKWADAILLVYDLTDRE 85

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 17 EMRVVMLGLDAAGKTTILYKLHI-GEVLST-VPTIGFNVEKVQYKN----VIFTVWDVGG 70
          E +++++G    GKTT   K H+ GE     +PT+G  V  +++      + F VWD  G
Sbjct: 9  EFKLILVGDGGVGKTT-FVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAG 67

Query: 71 QEKL 74
          QEK 
Sbjct: 68 QEKF 71

Length = 215

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 29/131 (22%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVL--STVPTIGFNVEKVQYKNVIFTV---------WD 67
           +V+++G    GKT +L +   G  L  S + T+G     +Q+ N + TV         WD
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVG-----IQFTNKVVTVDGVKVKLQIWD 56

Query: 68  VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFMLNSVI 121
             GQE+ R +   Y+ +   L+ + D  +       K  F  I      I +    + VI
Sbjct: 57  TAGQERFRSVTHAYYRDAHALLLLYDVTN-------KSSFDNIRAWLTEILEYAQSDVVI 109

Query: 122 LVFANKQDMKG 132
           ++  NK DM G
Sbjct: 110 MLLGNKADMSG 120

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 48  TIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEF 107
           T+  N E+V+ +     +WD  GQE+ R +   Y+  T G+I V D  + E     K+  
Sbjct: 47  TVEINGERVKLQ-----IWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWL 101

Query: 108 QAIIKDPFMLNSVILVFANKQD 129
           Q I ++   +  V++   NK D
Sbjct: 102 QEIEQNCDDVCKVLV--GNKND 121

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVP-TIGFN----VEKVQYKNVIFTVWDVGGQEK 73
           + +++G    GK+ +L++    + ++  P TIG      + +V  + +   +WD  GQE+
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRE---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
            R + R Y+    G + V D   R     +     + +  + +P   N+VI +  NK D+
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN-LTNP---NTVIFLIGNKADL 119

Query: 131 KG 132
           + 
Sbjct: 120 EA 121

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 20/127 (15%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN---------VIFTVWDV 68
           ++V++LG    GK++++ +     V +   T  F+   V++ N         V   +WD 
Sbjct: 6   LKVILLGDGGVGKSSLMNRY----VTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDT 61

Query: 69  GGQEKLRPLWRHYFNNTDG--LIYVVDSLDR-ERIGKAKQEF--QAIIKDPFMLNSVILV 123
            GQE+ R L   ++  +D   L + VD     + +   K+EF   A +K+P     VIL 
Sbjct: 62  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL- 120

Query: 124 FANKQDM 130
             NK D+
Sbjct: 121 -GNKIDI 126

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|216591 pfam01591, 6PF2K, 6-phosphofructo-2-kinase

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 36/126 (28%), Positives = 49/126 (38%), Gaps = 20/126 (15%)

Query: 13  FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST--VPTIGFNVEKV------QYKNVIFT 64
           F NS+  +VM+GL A GKT I  KL     L+   VPT  FNV +        Y +  F 
Sbjct: 6   FTNSKTLIVMVGLPARGKTYISKKL--TRYLNWIGVPTKVFNVGEYRRSAVKAYSDYEFF 63

Query: 65  VWDVGGQEKLRPLWR--------HYFNNTDGLIYVVDSLD--RERIGKAKQEFQAIIKDP 114
             D     K+R             Y N   G + + D+ +  RER        +      
Sbjct: 64  RPDNEEGMKIREQCALAALNDVLAYLNEESGQVAIFDATNTTRERRKMILDFAEENGLKV 123

Query: 115 FMLNSV 120
           F L S+
Sbjct: 124 FFLESI 129

This enzyme occurs as a bifunctional enzyme with fructose-2,6-bisphosphatase. The bifunctional enzyme catalyzes both the synthesis and degradation of fructose-2,6-bisphosphate, a potent regulator of glycolysis. This enzyme contains a P-loop motif. Length = 219

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 10/74 (13%)

Query: 20 VVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVE-KVQYKNVIFTV--WDVGGQE--- 72
          +V++G  A GKT +L      +  +  VPT+  N    V        +  WD  GQE   
Sbjct: 3  IVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEYD 62

Query: 73 KLRPLWRHYFNNTD 86
          +LRPL    +  TD
Sbjct: 63 RLRPL---SYPQTD 73

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFNVEKVQY---KNVIFTVWDVGGQE-- 72
          +VV+LG  A GKT++L     G       PT+  N     +     V  ++WD  GQE  
Sbjct: 2  KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61

Query: 73 -KLRPL 77
           +LR L
Sbjct: 62 DRLRSL 67

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIG--FNVEKV--QYKNVIFTVWDVGGQE 72
            +++++G    GK+ +L +        + + TIG  F +  +    K +   +WD  GQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDM 130
           + R +   Y+    G+I V D  D +     K   + I  D      V  ++  NK DM
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNI--DEHASEDVERMLVGNKCDM 120

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 18/123 (14%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIG--FNVE--KVQYKNVIFTVWDVGGQEK 73
           +++++G    GKT ++ +   G        TIG  F ++  ++Q K V   +WD  GQE+
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI---IKDPFML---NSVILVFANK 127
            R + + Y+ + +G I   D      I + +  F+++   I++       N V+L+  NK
Sbjct: 65  FRTITQSYYRSANGAIIAYD------ITR-RSSFESVPHWIEEVEKYGASNVVLLLIGNK 117

Query: 128 QDM 130
            D+
Sbjct: 118 CDL 120

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 12/99 (12%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVE----KVQYKNVIFTVWDVGGQEK 73
           R++++G    GKT +L +    E  S+ + TIG + +    +V    V   +WD  GQE+
Sbjct: 2   RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIK 112
            + + + Y+    G I++V  +  ER       +Q I+K
Sbjct: 62  YQTITKQYYRRAQG-IFLVYDISSER------SYQHIMK 93

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 13/90 (14%)

Query: 17 EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFN-VEKVQYKN---VIFTVWDVGGQ 71
          ++++V++G    GKT +L     G      VPT+  N V  +Q  N   +   +WD  GQ
Sbjct: 3  KVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQ 62

Query: 72 E---KLRPLWRHYFNNTDGLI--YVVDSLD 96
          E   +LRPL    + + D ++  Y VD+  
Sbjct: 63 EDYDRLRPL---SYPDVDVILICYSVDNPT 89

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 19/93 (20%)

Query: 18 MRVVMLGLDAAGKTTILY-----KLHIGEVLSTVPTIGFNVEKVQYKN------------ 60
          ++++ LG    GKTT LY     K +  + ++TV  I F  ++V Y +            
Sbjct: 5  IKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTV-GIDFREKRVVYNSQGPDGTSGKAFR 62

Query: 61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93
          V   +WD  GQE+ R L   +F +  G + + D
Sbjct: 63 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFD 95

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 13/84 (15%)

Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLSTVP-----TIG--FNVEKVQYKN--VIFTVWDVG 69
          ++V++G    GKT ++ +   G      P     TIG  F ++ V+ K   +   +WD  
Sbjct: 9  KIVLIGNAGVGKTCLVRRFTQG----LFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTA 64

Query: 70 GQEKLRPLWRHYFNNTDGLIYVVD 93
          GQE+ R + + Y+ + + LI   D
Sbjct: 65 GQERFRSITQSYYRSANALILTYD 88

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
PLN00223	181	ADP-ribosylation factor; Provisional	100.0
PTZ00133	182	ADP-ribosylation factor; Provisional	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	100.0
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	100.0
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	100.0
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
smart00178	184	SAR Sar1p-like members of the Ras-family of small	100.0
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	100.0
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.98
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.98
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.98
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.98
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.98
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.98
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.98
PLN03110	216	Rab GTPase; Provisional	99.98
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.98
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.98
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.98
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.97
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.97
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.97
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.97
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.97
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.97
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.97
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.97
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.97
PLN03118	211	Rab family protein; Provisional	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.97
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.97
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.97
PLN03108	210	Rab family protein; Provisional	99.97
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.97
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.97
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.97
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.97
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.97
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.96
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.96
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.96
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.96
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.96
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.96
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.96
KOG0395	196	consensus Ras-related GTPase [General function pre	99.95
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.95
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.95
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.95
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.94
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.94
PRK03003	472	GTP-binding protein Der; Reviewed	99.94
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.93
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.93
PLN00023	334	GTP-binding protein; Provisional	99.93
PRK04213	201	GTP-binding protein; Provisional	99.93
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
PRK03003	472	GTP-binding protein Der; Reviewed	99.93
PRK15494	339	era GTPase Era; Provisional	99.92
cd00881	189	GTP_translation_factor GTP translation factor fami	99.92
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.92
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
COG1160	444	Predicted GTPases [General function prediction onl	99.92
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.92
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.92
PTZ00099	176	rab6; Provisional	99.92
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.91
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.91
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.91
PRK00093	435	GTP-binding protein Der; Reviewed	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
COG1100	219	GTPase SAR1 and related small G proteins [General	99.91
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.91
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.91
PRK12296	500	obgE GTPase CgtA; Reviewed	99.91
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.91
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.91
PRK11058	426	GTPase HflX; Provisional	99.91
PRK12297	424	obgE GTPase CgtA; Reviewed	99.9
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.9
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.9
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.89
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.89
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.89
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.89
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.89
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.89
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.89
PRK00089	292	era GTPase Era; Reviewed	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.88
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
COG2229	187	Predicted GTPase [General function prediction only	99.88
PRK12298	390	obgE GTPase CgtA; Reviewed	99.88
COG1159	298	Era GTPase [General function prediction only]	99.88
PRK05306	787	infB translation initiation factor IF-2; Validated	99.88
KOG1673	205	consensus Ras GTPases [General function prediction	99.88
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.87
CHL00189	742	infB translation initiation factor 2; Provisional	99.87
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.87
PRK12317	425	elongation factor 1-alpha; Reviewed	99.86
PRK05433	600	GTP-binding protein LepA; Provisional	99.86
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.86
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.85
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.85
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.85
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.85
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.84
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.84
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.84
COG0218	200	Predicted GTPase [General function prediction only	99.84
PRK10218	607	GTP-binding protein; Provisional	99.84
COG0486	454	ThdF Predicted GTPase [General function prediction	99.83
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.83
PRK04004	586	translation initiation factor IF-2; Validated	99.83
COG1160	444	Predicted GTPases [General function prediction onl	99.83
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.83
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.82
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.82
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.82
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.82
COG2262	411	HflX GTPases [General function prediction only]	99.82
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.82
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.81
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.81
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.8
PRK12735	396	elongation factor Tu; Reviewed	99.79
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.79
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.79
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.79
PRK12736	394	elongation factor Tu; Reviewed	99.79
COG1084	346	Predicted GTPase [General function prediction only	99.78
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.78
CHL00071	409	tufA elongation factor Tu	99.78
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.78
PRK13351	687	elongation factor G; Reviewed	99.78
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.77
COG1163	365	DRG Predicted GTPase [General function prediction	99.76
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.76
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.76
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.76
PRK00049	396	elongation factor Tu; Reviewed	99.76
KOG0090	238	consensus Signal recognition particle receptor, be	99.76
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.75
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.74
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.74
PLN03126	478	Elongation factor Tu; Provisional	99.74
COG0536	369	Obg Predicted GTPase [General function prediction	99.74
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.74
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.74
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.73
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.73
PTZ00141	446	elongation factor 1- alpha; Provisional	99.73
PLN00043	447	elongation factor 1-alpha; Provisional	99.73
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.72
PLN03127	447	Elongation factor Tu; Provisional	99.72
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.72
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.71
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.71
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.71
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.71
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.7
KOG1145	683	consensus Mitochondrial translation initiation fac	99.7
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.7
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.69
PRK12739	691	elongation factor G; Reviewed	99.67
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.67
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.67
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.66
PRK12740	668	elongation factor G; Reviewed	99.66
COG3596	296	Predicted GTPase [General function prediction only	99.66
PRK09602	396	translation-associated GTPase; Reviewed	99.65
PRK00007	693	elongation factor G; Reviewed	99.65
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.64
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.62
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.61
PRK13768	253	GTPase; Provisional	99.59
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.59
PRK09866	741	hypothetical protein; Provisional	99.59
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.57
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.57
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.55
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.54
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.53
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.53
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.53
PRK14845	1049	translation initiation factor IF-2; Provisional	99.52
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.51
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.5
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.49
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.49
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.49
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.49
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.48
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.46
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.46
PTZ00258	390	GTP-binding protein; Provisional	99.44
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.44
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.41
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.41
PRK12289	352	GTPase RsgA; Reviewed	99.41
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.41
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.39
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.39
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.38
PTZ00416	836	elongation factor 2; Provisional	99.37
KOG0410	410	consensus Predicted GTP binding protein [General f	99.37
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.36
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.36
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.35
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.34
PRK07560	731	elongation factor EF-2; Reviewed	99.34
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.33
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.33
PRK12288	347	GTPase RsgA; Reviewed	99.32
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.31
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.31
PRK09601	364	GTP-binding protein YchF; Reviewed	99.3
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.28
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.27
PRK00098	298	GTPase RsgA; Reviewed	99.27
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.26
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.26
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.25
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.24
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.24
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.23
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.23
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.21
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.19
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.16
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.16
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.14
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.14
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.13
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.13
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.12
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	99.12
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.1
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.09
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.06
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.04
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.03
PRK13796	365	GTPase YqeH; Provisional	99.03
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.02
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.0
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.99
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.99
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.99
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.97
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.95
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.92
KOG1143	591	consensus Predicted translation elongation factor	98.9
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.89
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.87
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.85
KOG2486	320	consensus Predicted GTPase [General function predi	98.84
COG1161	322	Predicted GTPases [General function prediction onl	98.82
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.81
COG1162	301	Predicted GTPases [General function prediction onl	98.79
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.77
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.77
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.76
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.75
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.74
PRK01889	356	GTPase RsgA; Reviewed	98.73
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.72
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.65
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.64
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.63
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.61
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.6
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.59
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.59
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.59
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.54
PRK14974	336	cell division protein FtsY; Provisional	98.51
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.48
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.44
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.44
PRK10416	318	signal recognition particle-docking protein FtsY;	98.44
KOG0460	449	consensus Mitochondrial translation elongation fac	98.44
cd03112	158	CobW_like The function of this protein family is u	98.42
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.42
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.42
PRK12289	352	GTPase RsgA; Reviewed	98.42
PRK12288	347	GTPase RsgA; Reviewed	98.4
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.4
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.39
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.38
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.35
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.34
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.33
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.29
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.24
PRK13796	365	GTPase YqeH; Provisional	98.23
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.23
COG1161	322	Predicted GTPases [General function prediction onl	98.21
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.21
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.2
cd03114	148	ArgK-like The function of this protein family is u	98.16
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.15
PRK00098	298	GTPase RsgA; Reviewed	98.14
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.12
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.11
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.1
COG3523	1188	IcmF Type VI protein secretion system component Va	98.07
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.06
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.06
COG0523	323	Putative GTPases (G3E family) [General function pr	98.05
PRK10867	433	signal recognition particle protein; Provisional	98.03
KOG2484	435	consensus GTPase [General function prediction only	98.03
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.0
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.99
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.99
KOG2484	435	consensus GTPase [General function prediction only	97.98
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.98
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.97
TIGR00959	428	ffh signal recognition particle protein. This mode	97.95
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.95
COG1162	301	Predicted GTPases [General function prediction onl	97.9
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.9
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.88
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.85
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.84
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.83
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.82
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.82
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.8
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.8
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.76
PRK13695	174	putative NTPase; Provisional	97.74
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.71
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.66
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.65
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.65
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.62
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.59
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.56
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.56
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.56
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.53
cd03111	106	CpaE_like This protein family consists of proteins	97.53
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.51
PF05729	166	NACHT: NACHT domain	97.48
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.48
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.47
PRK08118	167	topology modulation protein; Reviewed	97.46
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.45
PRK07261	171	topology modulation protein; Provisional	97.44
cd03116	159	MobB Molybdenum is an essential trace element in t	97.43
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.42
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.39
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.39
KOG1533	290	consensus Predicted GTPase [General function predi	97.38
PRK06851	367	hypothetical protein; Provisional	97.31
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.29
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.28
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.27
PRK05439	311	pantothenate kinase; Provisional	97.26
PRK01889	356	GTPase RsgA; Reviewed	97.23
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.22
cd02036	179	MinD Bacterial cell division requires the formatio	97.18
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	97.16
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.16
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.11
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.1
PRK05480	209	uridine/cytidine kinase; Provisional	97.1
PRK03839	180	putative kinase; Provisional	97.09
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.09
PRK06217	183	hypothetical protein; Validated	97.09
PF00004	132	AAA: ATPase family associated with various cellula	97.08
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.07
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.06
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.05
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.05
KOG0781	587	consensus Signal recognition particle receptor, al	97.05
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.04
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.03
PRK08233	182	hypothetical protein; Provisional	97.03
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.02
PHA00729	226	NTP-binding motif containing protein	97.02
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.99
smart00382	148	AAA ATPases associated with a variety of cellular	96.98
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.96
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.96
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.96
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.96
PRK04195	482	replication factor C large subunit; Provisional	96.95
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	96.94
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.92
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.92
PRK14530	215	adenylate kinase; Provisional	96.92
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.91
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.91
PRK13949	169	shikimate kinase; Provisional	96.91
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.9
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.89
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	96.89
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.89
PRK00411	394	cdc6 cell division control protein 6; Reviewed	96.88
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.87
PRK06547	172	hypothetical protein; Provisional	96.87
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.87
PRK14738	206	gmk guanylate kinase; Provisional	96.87

>PLN00223 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=2.6e-38  Score=222.89  Aligned_cols=180  Identities=58%  Similarity=1.083  Sum_probs=159.0

Q ss_pred             CchhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHh
Q 029446            1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   80 (193)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (193)
                      ||..++.+++++...+.+||+++|.++||||||++++..+.+..+.||.+.++..+....+.+.+||+||+++++..+..
T Consensus         1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~   80 (181)
T PLN00223          1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH   80 (181)
T ss_pred             CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence            78778788777766788999999999999999999999888877789999988888888999999999999999999999


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      +++++|++|+|+|++++.++++...++..++......+.|+++|+||+|+.+....+++.+.++........+.+++|||
T Consensus        81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa  160 (181)
T PLN00223         81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
T ss_pred             HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence            99999999999999999999999988888876544467999999999999887777888888887666566677889999


Q ss_pred             ccCCCHHHHHHHHHHHHHhh
Q 029446          161 LKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~  180 (193)
                      ++|+|++++|++|.+.+..+
T Consensus       161 ~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        161 TSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             CCCCCHHHHHHHHHHHHhhc
Confidence            99999999999999887543

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=1.2e-37  Score=219.73  Aligned_cols=180  Identities=59%  Similarity=1.073  Sum_probs=159.3

Q ss_pred             CchhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHh
Q 029446            1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   80 (193)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (193)
                      ||+++..+++.....+.+||+++|++|+|||||++++..+.+..+.||.+.++..+....+.+.+||+||+++++..+..
T Consensus         1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~   80 (182)
T PTZ00133          1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH   80 (182)
T ss_pred             CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence            78888889998877888999999999999999999998888877778999888888888899999999999999999999


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      +++++|++|+|+|++++.+++....++..++......+.|+++|+||.|+.+....+++...++...++...+.++++||
T Consensus        81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa  160 (182)
T PTZ00133         81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA  160 (182)
T ss_pred             HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence            99999999999999999999999988888876544457899999999999876666778788877666666778889999


Q ss_pred             ccCCCHHHHHHHHHHHHHhh
Q 029446          161 LKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~  180 (193)
                      ++|.|+++++++|.+.+.+.
T Consensus       161 ~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        161 TTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999887654

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-38  Score=214.10  Aligned_cols=168  Identities=22%  Similarity=0.331  Sum_probs=141.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE----EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      -++.|||+|+|+.|+|||+|+.||..+.+. .+..|+|+++..    +..+.++++||||+||++|+++..+++++++++
T Consensus         6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi   85 (205)
T KOG0084|consen    6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   85 (205)
T ss_pred             cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence            367899999999999999999999999998 578999988764    333678999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceE-EEEeccccCCCH
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWH-IQGTCALKGDGL  166 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  166 (193)
                      |+|||+++.+||.++..|+.++.+. ...+.|.++|+||+|+.+.... .+..+.+    +...+++ ++++||+++.|+
T Consensus        86 i~vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~f----a~~~~~~~f~ETSAK~~~NV  160 (205)
T KOG0084|consen   86 IFVYDITKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEF----ADELGIPIFLETSAKDSTNV  160 (205)
T ss_pred             EEEEEcccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHH----HHhcCCcceeecccCCccCH
Confidence            9999999999999999999998765 4467899999999999875221 1122222    2234446 999999999999


Q ss_pred             HHHHHHHHHHHHhhhccCCC
Q 029446          167 YEGLDWLASTLKEMRAAGYS  186 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~~~~~~  186 (193)
                      ++.|..|...+.++...+..
T Consensus       161 e~~F~~la~~lk~~~~~~~~  180 (205)
T KOG0084|consen  161 EDAFLTLAKELKQRKGLHVK  180 (205)
T ss_pred             HHHHHHHHHHHHHhcccCCC
Confidence            99999999999887765443

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=100.00  E-value=2e-36  Score=212.47  Aligned_cols=170  Identities=62%  Similarity=1.118  Sum_probs=147.9

Q ss_pred             HhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446            8 LFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus         8 ~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      +++.....+.+||+++|.+|+|||||++++..+.+..+.||.+.++..+....+.+.+||+||+..++..+..+++++|+
T Consensus         4 ~~~~~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~   83 (175)
T smart00177        4 LFSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQG   83 (175)
T ss_pred             hhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            34444446689999999999999999999987777677789998888787888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +++|+|++++.++++...++..+++.....+.|+++|+||+|+.+....+++.+.++....+...+.++++||++|+|++
T Consensus        84 ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       84 LIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            99999999999999999999998765444678999999999998766667787877776666677788899999999999


Q ss_pred             HHHHHHHHHH
Q 029446          168 EGLDWLASTL  177 (193)
Q Consensus       168 ~~~~~l~~~~  177 (193)
                      +++++|.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999998875

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04149 Arf6 Arf6 subfamily

Probab=100.00  E-value=5.5e-36  Score=208.86  Aligned_cols=162  Identities=63%  Similarity=1.128  Sum_probs=141.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      ....+||+++|.+|+|||||++++..+.+..+.||.+.++..+....+.+.+||+||+++++..++.+++++|++++|+|
T Consensus         6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D   85 (168)
T cd04149           6 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD   85 (168)
T ss_pred             CCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence            35679999999999999999999998887777789998887777888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHH
Q 029446           94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  173 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  173 (193)
                      ++++.++++...++.+++......+.|+++|+||+|+.+....+++.+.++....+...++++++||++|+|++++|++|
T Consensus        86 ~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l  165 (168)
T cd04149          86 SADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL  165 (168)
T ss_pred             CCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence            99999999999999888775444678999999999998766667777776655555566789999999999999999998


Q ss_pred             HH
Q 029446          174 AS  175 (193)
Q Consensus       174 ~~  175 (193)
                      .+
T Consensus       166 ~~  167 (168)
T cd04149         166 SS  167 (168)
T ss_pred             hc
Confidence            65

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-36  Score=206.01  Aligned_cols=164  Identities=21%  Similarity=0.335  Sum_probs=145.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--E--EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--V--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      -+.+|++++|+.++||||||++++.+.|. .|.+|+|+++..  +  ....+++++|||+||++|+.+.+.|++++.++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            35599999999999999999999999987 578999998754  2  235789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|||+++..+|+....|+.++..++...+.-+++|+||.||.+.   +++..+.+...++..+..|+++||+.|+||+++
T Consensus       100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NVk~l  176 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENVKQL  176 (221)
T ss_pred             EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence            99999999999999999999999877666788899999999987   556555555667788889999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 029446          170 LDWLASTLKEMR  181 (193)
Q Consensus       170 ~~~l~~~~~~~~  181 (193)
                      |..|...+....
T Consensus       177 FrrIaa~l~~~~  188 (221)
T KOG0094|consen  177 FRRIAAALPGME  188 (221)
T ss_pred             HHHHHHhccCcc
Confidence            999998887654

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=100.00  E-value=1.8e-35  Score=204.52  Aligned_cols=158  Identities=66%  Similarity=1.179  Sum_probs=138.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   97 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (193)
                      +||+++|.+++|||||++++..+.+..+.||.+.+...+....+.+.+||+||++++...+..+++++|++++|+|++++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~   80 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence            58999999999999999999888887778899988877778889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHH
Q 029446           98 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  175 (193)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  175 (193)
                      .+++....++..+.......+.|+++++||+|+.+....+++.+.+....++...+.++++||++|+|++++|++|.+
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150          81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            999999998988876544457899999999999776556677777766656667778999999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=100.00  E-value=6.6e-35  Score=204.60  Aligned_cols=172  Identities=53%  Similarity=0.977  Sum_probs=150.4

Q ss_pred             hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhc
Q 029446            4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFN   83 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   83 (193)
                      ++.++++.+.....++|+++|++|+|||||++++..+.+..+.+|.+.++..+.+..+.+.+||+||+.++...+..+++
T Consensus         2 ~~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~   81 (174)
T cd04153           2 LFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYT   81 (174)
T ss_pred             chhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhh
Confidence            46778887766678999999999999999999999888877788999888888888999999999999999999999999


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      ++|++++|+|+++++++.....++..+.+.....+.|+++++||+|+......+++.+.++....+...+++++|||++|
T Consensus        82 ~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g  161 (174)
T cd04153          82 NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG  161 (174)
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCC
Confidence            99999999999999999988888888876544467999999999999876566777777776555666788999999999


Q ss_pred             CCHHHHHHHHHH
Q 029446          164 DGLYEGLDWLAS  175 (193)
Q Consensus       164 ~gi~~~~~~l~~  175 (193)
                      +|+++++++|.+
T Consensus       162 ~gi~e~~~~l~~  173 (174)
T cd04153         162 EGLPEGLDWIAS  173 (174)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-36  Score=205.34  Aligned_cols=163  Identities=25%  Similarity=0.343  Sum_probs=139.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-ccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ...+|++++|..++|||||+-|+..+.|.++ .+|+|..+.+...    ..+++.||||+||++|.++.+.|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            4679999999999999999999999999976 7999987765433    3589999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|||+++.+||..+..|+.++..... +++-+.+||||+||.+.  .+.++...     .+...+..|+++||+++.|++
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~-----yAe~~gll~~ETSAKTg~Nv~  156 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQA-----YAESQGLLFFETSAKTGENVN  156 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHH-----HHHhcCCEEEEEecccccCHH
Confidence            99999999999999999999976644 77778899999999883  23333222     234466689999999999999


Q ss_pred             HHHHHHHHHHHhhhcc
Q 029446          168 EGLDWLASTLKEMRAA  183 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~~  183 (193)
                      ++|..|.+.+......
T Consensus       157 ~if~~Ia~~lp~~~~~  172 (200)
T KOG0092|consen  157 EIFQAIAEKLPCSDPQ  172 (200)
T ss_pred             HHHHHHHHhccCcccc
Confidence            9999999999877654

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-35  Score=200.32  Aligned_cols=166  Identities=21%  Similarity=0.307  Sum_probs=144.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE----EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE----KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ...+|++++|+.|+|||+|+.+++.+.|. .+..|+|+.+.    +++.+.+++++|||+||+.|++.+++|++++-+++
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            46799999999999999999999999987 45688887764    34457899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|||++++++|..+..|+.++.+.. .++.-+++++||+||...   +++.++.+...+++.+..++++||++++|+++.
T Consensus        84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa  159 (216)
T KOG0098|consen   84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEA  159 (216)
T ss_pred             EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence            9999999999999999999998763 478999999999999876   345555555555667778999999999999999


Q ss_pred             HHHHHHHHHhhhccC
Q 029446          170 LDWLASTLKEMRAAG  184 (193)
Q Consensus       170 ~~~l~~~~~~~~~~~  184 (193)
                      |..+...+++....|
T Consensus       160 F~nta~~Iy~~~q~g  174 (216)
T KOG0098|consen  160 FINTAKEIYRKIQDG  174 (216)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887654

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-34  Score=195.82  Aligned_cols=179  Identities=64%  Similarity=1.156  Sum_probs=171.9

Q ss_pred             CchhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHh
Q 029446            1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   80 (193)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (193)
                      ||..+.+++......++++|+++|-.+|||||+++++-.+++..+.||+|.++..+.++++++.+||.+||+.++.+|..
T Consensus         1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~   80 (181)
T KOG0070|consen    1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH   80 (181)
T ss_pred             CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence            88899999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      |+++.+++|||+|.++++.+.+....+..++.....++.|+++.+||.|+.......++...+++..++.+.+.+..|+|
T Consensus        81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a  160 (181)
T KOG0070|consen   81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA  160 (181)
T ss_pred             hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence            99999999999999999999999999999999877789999999999999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHh
Q 029446          161 LKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~  179 (193)
                      .+|+|+.+.++++.+.+..
T Consensus       161 ~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  161 ISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             cccccHHHHHHHHHHHHhc
Confidence            9999999999999998854

>cd04154 Arl2 Arl2 subfamily

Probab=100.00  E-value=6.7e-34  Score=199.36  Aligned_cols=166  Identities=42%  Similarity=0.813  Sum_probs=141.8

Q ss_pred             hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           10 DVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        10 ~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      +..+....++|+++|++|+|||||++++.+..+..+.+|.+.....+......+.+||+||++.++..+..+++++|+++
T Consensus         7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154           7 KQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             hhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            34455678999999999999999999999887767778888777777778899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|+|++++.++++...|+..+.......+.|+++|+||+|+.+....+++.+.+.....+...++++++||++|.|++++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  166 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQG  166 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence            99999999999999888888876544568999999999999876555666666655444566789999999999999999


Q ss_pred             HHHHHH
Q 029446          170 LDWLAS  175 (193)
Q Consensus       170 ~~~l~~  175 (193)
                      ++++.+
T Consensus       167 ~~~l~~  172 (173)
T cd04154         167 IDWLVD  172 (173)
T ss_pred             HHHHhc
Confidence            999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.4e-34  Score=204.69  Aligned_cols=161  Identities=16%  Similarity=0.245  Sum_probs=131.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      .+.+||+++|+.|+|||||+.++..+.+. .+.++.+..+.  .+..  ..+.+.+||++|+++|..++..+++++|+++
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999998876 44566666553  3333  3488999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|||++++.+|+++..|+.++....  ++.|+|||+||+|+....  ..++ .+.+    ++..++++++|||++|.||+
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~-~~~~----a~~~~~~~~e~SAk~g~~V~  156 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQ-AQAY----AERNGMTFFEVSPLCNFNIT  156 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHH-HHHH----HHHcCCEEEEecCCCCCCHH
Confidence            9999999999999999999986543  579999999999997532  2222 2222    23456689999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 029446          168 EGLDWLASTLKEMRA  182 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~  182 (193)
                      ++|++|.+.+..++.
T Consensus       157 ~~F~~l~~~i~~~~~  171 (189)
T cd04121         157 ESFTELARIVLMRHG  171 (189)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999998876663

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04158 ARD1 ARD1 subfamily

Probab=100.00  E-value=1.3e-33  Score=197.14  Aligned_cols=162  Identities=52%  Similarity=0.931  Sum_probs=137.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   98 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (193)
                      ||+++|.++||||||++++.+..+..+.||.+..+..+.+..+.+.+||+||+.+++..+..+++++|++++|+|+++++
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~   80 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD   80 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence            68999999999999999999988777788999888888888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-CCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446           99 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      +++++..|+..+.......+.|+++|+||+|+.+....+++.+.+..... ....+.+++|||++|.|++++|++|.+.+
T Consensus        81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~  160 (169)
T cd04158          81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL  160 (169)
T ss_pred             HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence            99999999999886544456899999999999876555666555443222 22345789999999999999999998876


Q ss_pred             Hhh
Q 029446          178 KEM  180 (193)
Q Consensus       178 ~~~  180 (193)
                      .+.
T Consensus       161 ~~~  163 (169)
T cd04158         161 VAA  163 (169)
T ss_pred             hhc
Confidence            543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.5e-33  Score=197.67  Aligned_cols=171  Identities=46%  Similarity=0.871  Sum_probs=155.4

Q ss_pred             HHhhhhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCC
Q 029446            7 KLFDVFFG-NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNT   85 (193)
Q Consensus         7 ~~~~~~~~-~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (193)
                      +++..... .+.++|+++|..||||||+++++..+....+.||.|.+...+.+.+..+.+||.+|+..++..|+.+++++
T Consensus         3 ~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~   82 (175)
T PF00025_consen    3 SVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNA   82 (175)
T ss_dssp             HHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTE
T ss_pred             HHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecccc
Confidence            33444333 78999999999999999999999988877888999999999999999999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCC-CCceEEEEeccccCC
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK-NRKWHIQGTCALKGD  164 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  164 (193)
                      |++|||+|+++.+.+.+....+..++......+.|+++++||.|+.+....+++...+.+..+. ...+.++.|||.+|+
T Consensus        83 ~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~  162 (175)
T PF00025_consen   83 DGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE  162 (175)
T ss_dssp             SEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred             ceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence            9999999999999999999999999887666789999999999999888888898888877775 788899999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029446          165 GLYEGLDWLASTL  177 (193)
Q Consensus       165 gi~~~~~~l~~~~  177 (193)
                      |+.+.++||.+++
T Consensus       163 Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  163 GVDEGLEWLIEQI  175 (175)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=4.6e-34  Score=203.83  Aligned_cols=159  Identities=18%  Similarity=0.292  Sum_probs=127.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +.|+++|+.|+|||||++++..+.+.. +.+|.+..+.  .+..+  .+.+.+|||+|+++|+.++..+++++|++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            468999999999999999999998874 5678776654  34443  488999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCC-CceEEEEeccccCCCHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKN-RKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      |++++++|+++..|+..+... ...+.|+++|+||+|+...... .+..+.+    ++. .++.+++|||++|+||+++|
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~----a~~~~~~~~~etSAktg~gV~e~F  155 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKF----AQQITGMRFCEASAKDNFNVDEIF  155 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHH----HHhcCCCEEEEecCCCCCCHHHHH
Confidence            999999999999888766443 3467999999999999653221 1111222    112 24589999999999999999


Q ss_pred             HHHHHHHHhhh
Q 029446          171 DWLASTLKEMR  181 (193)
Q Consensus       171 ~~l~~~~~~~~  181 (193)
                      ++|.+.+.+..
T Consensus       156 ~~l~~~~~~~~  166 (202)
T cd04120         156 LKLVDDILKKM  166 (202)
T ss_pred             HHHHHHHHHhC
Confidence            99999886543

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-34  Score=199.72  Aligned_cols=167  Identities=19%  Similarity=0.280  Sum_probs=141.1

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      ..++.+||+++|+++||||+++.++..+.+. .+..|.|+++..  +..  ..+.+++|||+||++|+.+...|+++|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            5578899999999999999999999999987 456888888753  333  56889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +++|||+++..+|+++..|+..+-+ +...+.|.++|+||+|+...   +++..+.+...+...+++++|+||++|.||+
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e-~a~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~  163 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDE-HASDDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTNFNIE  163 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHh-hCCCCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence            9999999999999999997777654 45569999999999999874   3333333333445667799999999999999


Q ss_pred             HHHHHHHHHHHhhhcc
Q 029446          168 EGLDWLASTLKEMRAA  183 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~~  183 (193)
                      ++|..|.+.+.++...
T Consensus       164 eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  164 EAFLSLARDILQKLED  179 (207)
T ss_pred             HHHHHHHHHHHhhcch
Confidence            9999999999865543

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2.6e-34  Score=201.16  Aligned_cols=161  Identities=17%  Similarity=0.252  Sum_probs=129.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      .+||+++|.+|+|||||++++..+.++ .+.||.+..+. .+..  ..+.+.+||+||+++++..+..+++++|++++||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            579999999999999999999999887 45678775554 3333  3478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      |++++.+|+.+..|+..+.......+.|+++|+||+|+...... .+....+    ++..++++++|||++|.||+++|+
T Consensus        82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~----a~~~~~~~~e~Sa~~~~~v~~~f~  157 (172)
T cd04141          82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNL----AREFNCPFFETSAALRHYIDDAFH  157 (172)
T ss_pred             ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHH----HHHhCCEEEEEecCCCCCHHHHHH
Confidence            99999999999887766654333357999999999998654211 1111111    234566899999999999999999


Q ss_pred             HHHHHHHhhh
Q 029446          172 WLASTLKEMR  181 (193)
Q Consensus       172 ~l~~~~~~~~  181 (193)
                      ++.+.+.+..
T Consensus       158 ~l~~~~~~~~  167 (172)
T cd04141         158 GLVREIRRKE  167 (172)
T ss_pred             HHHHHHHHhc
Confidence            9999887644

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=100.00  E-value=5e-33  Score=196.67  Aligned_cols=173  Identities=31%  Similarity=0.526  Sum_probs=148.0

Q ss_pred             hHHHHhhhhc-CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhh
Q 029446            4 AFRKLFDVFF-GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   82 (193)
Q Consensus         4 ~~~~~~~~~~-~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   82 (193)
                      -|.++++.+. ..+.++|+++|.+|||||||++++.++.+..+.||.+.+...+...+.++.+||+||+..++..+..++
T Consensus         3 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~   82 (184)
T smart00178        3 WFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYF   82 (184)
T ss_pred             HHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence            3667777443 378899999999999999999999998777667788888777888889999999999999999999999


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCC-------CCceEE
Q 029446           83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK-------NRKWHI  155 (193)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~  155 (193)
                      .++|++++|+|++++.++.....++..+.+.....+.|+++|+||+|+......+++.+.+++....       .....+
T Consensus        83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i  162 (184)
T smart00178       83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEV  162 (184)
T ss_pred             CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEE
Confidence            9999999999999999999988888888765445689999999999998777778888888765432       245679


Q ss_pred             EEeccccCCCHHHHHHHHHHH
Q 029446          156 QGTCALKGDGLYEGLDWLAST  176 (193)
Q Consensus       156 ~~~Sa~~~~gi~~~~~~l~~~  176 (193)
                      ++|||++++|++++++||.++
T Consensus       163 ~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      163 FMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EEeecccCCChHHHHHHHHhh
Confidence            999999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04151 Arl1 Arl1 subfamily

Probab=100.00  E-value=4.6e-33  Score=192.36  Aligned_cols=157  Identities=59%  Similarity=1.073  Sum_probs=134.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   98 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (193)
                      ||+++|++++|||||++++..+.+..+.||.+.+...+.+...++.+||+||+..++..+..+++++|++++|+|++++.
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   80 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD   80 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence            68999999999999999998888777778888888778788899999999999999999999999999999999999998


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHH
Q 029446           99 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  175 (193)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  175 (193)
                      ++.....++..+++.....+.|+++|+||+|+.+.....++...++....+..+.+++++||+++.|+++++++|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151          81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            88887777777666544457999999999999876555666666665444555678999999999999999999864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=8.8e-34  Score=204.53  Aligned_cols=163  Identities=20%  Similarity=0.246  Sum_probs=131.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   97 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (193)
                      +||+++|.+|+|||||++++..+.+..+.+|.+..+....+..+.+.+||++|++.+...+..+++++|++|+|||++++
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~   80 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV   80 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence            58999999999999999999999988777888888776667778999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC---------------------CCHhH---HHhhhCC------Cc
Q 029446           98 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA---------------------MTPME---VCEGLGL------FD  147 (193)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---------------------~~~~~---~~~~~~~------~~  147 (193)
                      ++|+++..|+..+... ...+.|+|+|+||+|+.+.                     ...++   +.+....      ..
T Consensus        81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~  159 (220)
T cd04126          81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL  159 (220)
T ss_pred             HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence            9999999999888654 3357899999999998751                     01111   1111110      00


Q ss_pred             CCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          148 LKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      .....++|++|||++|+||+++|+.+++.+.+..
T Consensus       160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~  193 (220)
T cd04126         160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI  193 (220)
T ss_pred             cccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence            0112268999999999999999999998877443

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=100.00  E-value=8.9e-33  Score=182.71  Aligned_cols=176  Identities=40%  Similarity=0.730  Sum_probs=162.0

Q ss_pred             HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCC
Q 029446            6 RKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNT   85 (193)
Q Consensus         6 ~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (193)
                      .=+.+...++++++|+++|..||||||++++|.+.......||.|..+.++.++..++++||.+||...+..|+.|++..
T Consensus         5 silrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfest   84 (185)
T KOG0073|consen    5 SILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFEST   84 (185)
T ss_pred             HHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhcc
Confidence            33444555778999999999999999999999999988889999999999999999999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-CCCceEEEEeccccCC
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGD  164 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~  164 (193)
                      |++|+|+|.+++..+++..+.+.+++......+.|+++++||.|+......+++...+.+..+ ++.+++++.||+.+|+
T Consensus        85 dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge  164 (185)
T KOG0073|consen   85 DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGE  164 (185)
T ss_pred             CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence            999999999999999999999999988766778999999999999988888899988888777 8899999999999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q 029446          165 GLYEGLDWLASTLKEMR  181 (193)
Q Consensus       165 gi~~~~~~l~~~~~~~~  181 (193)
                      ++.+.++|+.+.+.++.
T Consensus       165 ~l~~gidWL~~~l~~r~  181 (185)
T KOG0073|consen  165 DLLEGIDWLCDDLMSRL  181 (185)
T ss_pred             cHHHHHHHHHHHHHHHh
Confidence            99999999999998754

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=8.8e-34  Score=199.65  Aligned_cols=161  Identities=18%  Similarity=0.206  Sum_probs=127.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEE--EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQ--YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ...+||+++|++++|||||++++..+.+. .+.||.+..+. .+.  ...+.+.+|||+|+++|..+++.+++++|++++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            46789999999999999999999999887 46788876653 222  346789999999999999999999999999999


Q ss_pred             EEECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcCCCCce-EEEEec
Q 029446           91 VVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRKW-HIQGTC  159 (193)
Q Consensus        91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S  159 (193)
                      |||++++.+|+++ ..|+..+....  ++.|+|+|+||+|+.+...         ...+....+...++..++ +|++||
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            9999999999997 67777765532  5789999999999864210         011222222222345553 899999


Q ss_pred             cccCCC-HHHHHHHHHHHH
Q 029446          160 ALKGDG-LYEGLDWLASTL  177 (193)
Q Consensus       160 a~~~~g-i~~~~~~l~~~~  177 (193)
                      |++|+| |+++|+.+++.+
T Consensus       161 Ak~~~n~v~~~F~~~~~~~  179 (182)
T cd04172         161 ALQSENSVRDIFHVATLAC  179 (182)
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            999998 999999998864

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04157 Arl6 Arl6 subfamily

Probab=100.00  E-value=1.3e-32  Score=190.74  Aligned_cols=157  Identities=42%  Similarity=0.763  Sum_probs=131.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc-c-ccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV-L-STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   96 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~-~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   96 (193)
                      +|+++|++|||||||++++.+... . .+.||.+.....+......+.+||+||+.++...+..+++++|++++|+|+++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~   80 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD   80 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence            589999999999999999998753 3 56788888777777788999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446           97 RERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  174 (193)
Q Consensus        97 ~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  174 (193)
                      +.+++....++..+.+...  ..+.|+++|+||+|+.+.....++...+.........++++++||++|+|+++++++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~  160 (162)
T cd04157          81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ  160 (162)
T ss_pred             HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence            9999988888888766432  25799999999999987655566666665443334456799999999999999999986


Q ss_pred             H
Q 029446          175 S  175 (193)
Q Consensus       175 ~  175 (193)
                      +
T Consensus       161 ~  161 (162)
T cd04157         161 A  161 (162)
T ss_pred             c
Confidence            4

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=1.3e-33  Score=200.77  Aligned_cols=164  Identities=20%  Similarity=0.234  Sum_probs=127.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE---EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      ..+||+++|+.++|||||++++..+.+. .+.||.+..+.   .+....+.+.+|||+|+++|+.+++.+++++|++++|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            4589999999999999999999999986 56788876654   2333468899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh---------hCCCcCCCCc-eEEEEecc
Q 029446           92 VDSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEG---------LGLFDLKNRK-WHIQGTCA  160 (193)
Q Consensus        92 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~Sa  160 (193)
                      ||++++.+|+++.. |...+...  ..+.|+++|+||.|+.+.....+....         .+...++..+ +++++|||
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            99999999999975 65555433  257999999999999754221111111         1111122334 58999999


Q ss_pred             ccCCCHHHHHHHHHHHHHhhh
Q 029446          161 LKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      ++|+||+++|+++.+.+....
T Consensus       160 k~g~~v~e~f~~l~~~~~~~~  180 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLNPT  180 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhccc
Confidence            999999999999999886543

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.1e-33  Score=198.15  Aligned_cols=158  Identities=18%  Similarity=0.200  Sum_probs=125.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      +||+++|++++|||||+.++..+.+. ++.||.+..+. .+..  ..+.+.+|||+|+++++..+..++++++++++|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            68999999999999999999999987 56788876553 2222  45889999999999999999999999999999999


Q ss_pred             CCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-------HhHHHhhhCCCcCCCCce-EEEEeccccCC
Q 029446           94 SLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-------PMEVCEGLGLFDLKNRKW-HIQGTCALKGD  164 (193)
Q Consensus        94 ~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (193)
                      ++++++|+++ ..|+..+....  .+.|+|+|+||+|+.+...       ...+..+.+...++..+. ++++|||++|.
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            9999999998 57888775443  5799999999999965311       001111111122234444 69999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029446          165 GLYEGLDWLASTL  177 (193)
Q Consensus       165 gi~~~~~~l~~~~  177 (193)
                      ||+++|+.+.+.+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999876

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=3.4e-33  Score=194.53  Aligned_cols=157  Identities=18%  Similarity=0.312  Sum_probs=127.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      .+||+++|++|+|||||++++.++.+.. +.+|.+.++..  +..  ..+.+.+||+||++++...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            4799999999999999999999998764 45677766542  333  357899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      ||++++.+|+.+..|+..+... ..++.|+++|+||+|+.....  .++..+ +    ++..++++++|||++|+|++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~i~e~  155 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQ-F----ADENGLLFLECSAKTGENVEDA  155 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHH-H----HHHcCCEEEEEECCCCCCHHHH
Confidence            9999999999999999887553 235789999999999976532  222222 1    2334568999999999999999


Q ss_pred             HHHHHHHHHh
Q 029446          170 LDWLASTLKE  179 (193)
Q Consensus       170 ~~~l~~~~~~  179 (193)
                      |..+.+.+.+
T Consensus       156 f~~l~~~~~~  165 (166)
T cd04122         156 FLETAKKIYQ  165 (166)
T ss_pred             HHHHHHHHhh
Confidence            9999987754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.7e-34  Score=188.75  Aligned_cols=164  Identities=20%  Similarity=0.308  Sum_probs=141.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccc-cccceeEE----EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFNVE----KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~-~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ...+||+++|..|+|||||+-+|..+.+.+.. .|+|+++.    .+..+.+++.||||+||++|+.+.+.|++++.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            45699999999999999999999999998654 45777654    34447889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|||++.+++|.++..|+.++-...-.+++-.++|+||+|...+   +.+.++.++..++....-+++|||++.+|++.+
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~---R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE---RVVDREEGLKFARKHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc---ccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence            99999999999999999999876655567777899999996543   567777777777888889999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 029446          170 LDWLASTLKEMR  181 (193)
Q Consensus       170 ~~~l~~~~~~~~  181 (193)
                      |+.++.++.+.-
T Consensus       166 FeelveKIi~tp  177 (209)
T KOG0080|consen  166 FEELVEKIIETP  177 (209)
T ss_pred             HHHHHHHHhcCc
Confidence            999999997654

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=3.4e-33  Score=198.40  Aligned_cols=163  Identities=18%  Similarity=0.232  Sum_probs=131.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE---EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~---~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ...+||+++|++|+|||||++++.++.+. .+.+|.+..+..   +....+.+.+|||||++++..++..+++++|++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            45799999999999999999999998876 456777765542   33345778999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      |||++++.+|+.+..|+..+.+.....+.|+++|+||+|+.+..  ...+... .    .+..+.+++++||++|.|+++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~-~----~~~~~~~~~e~Sak~~~gi~~  157 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE-L----AKSFGIPFLETSAKQRVNVDE  157 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-H----HHHhCCEEEEeeCCCCCCHHH
Confidence            99999999999999998888765444688999999999986532  2211111 1    122345899999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 029446          169 GLDWLASTLKEMRA  182 (193)
Q Consensus       169 ~~~~l~~~~~~~~~  182 (193)
                      +|++|.+.+.+...
T Consensus       158 ~~~~l~~~l~~~~~  171 (189)
T PTZ00369        158 AFYELVREIRKYLK  171 (189)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999998876654

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=3.1e-33  Score=202.77  Aligned_cols=165  Identities=17%  Similarity=0.174  Sum_probs=129.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-E--EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-V--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ...+||+++|++++|||||+++|..+.+. .+.||++..+.. +  ....+.+.+|||+|+++|...++.+++++|++++
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl   90 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL   90 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence            35689999999999999999999999887 567888766642 2  2246889999999999999999999999999999


Q ss_pred             EEECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcCCCCce-EEEEec
Q 029446           91 VVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRKW-HIQGTC  159 (193)
Q Consensus        91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S  159 (193)
                      |||++++.+|+.+ ..|+..+....  ++.|+|+|+||+|+.....         ...+..+.+...++..++ +|++||
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS  168 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS  168 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence            9999999999985 67777776532  5789999999999864210         011212222223345566 699999


Q ss_pred             cccCC-CHHHHHHHHHHHHHhhh
Q 029446          160 ALKGD-GLYEGLDWLASTLKEMR  181 (193)
Q Consensus       160 a~~~~-gi~~~~~~l~~~~~~~~  181 (193)
                      |++|+ ||+++|..+...+.++.
T Consensus       169 Aktg~~~V~e~F~~~~~~~~~~~  191 (232)
T cd04174         169 AFTSEKSIHSIFRSASLLCLNKL  191 (232)
T ss_pred             CCcCCcCHHHHHHHHHHHHHHhc
Confidence            99998 89999999999887653

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=3.4e-33  Score=196.93  Aligned_cols=160  Identities=19%  Similarity=0.370  Sum_probs=129.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE------------cCEEEEEEecCCCCCCHHhHHh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY------------KNVIFTVWDVGGQEKLRPLWRH   80 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~------------~~~~~~i~D~~g~~~~~~~~~~   80 (193)
                      +.+||+++|++|+|||||++++.++.+. .+.+|.+.++..  +..            ..+.+.+||+||++++...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            5689999999999999999999998887 456787766543  222            2478999999999999999999


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEe
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGT  158 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  158 (193)
                      +++++|++++|||++++++|+.+..|+..+......++.|+++|+||+|+.+..  ..++. ..+    ++..+++++++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~  157 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KAL----ADKYGIPYFET  157 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHH----HHHcCCeEEEE
Confidence            999999999999999999999999999888665444678999999999987542  22222 222    12334589999


Q ss_pred             ccccCCCHHHHHHHHHHHHHhh
Q 029446          159 CALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       159 Sa~~~~gi~~~~~~l~~~~~~~  180 (193)
                      ||++|.|+++++++|.+.+.++
T Consensus       158 Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         158 SAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             eCCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999887653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=100.00  E-value=4.3e-32  Score=191.78  Aligned_cols=167  Identities=48%  Similarity=0.816  Sum_probs=135.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE-----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY-----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      +.+||+++|++|||||||++++..+.+..+.||.+.+...+..     ..+.+.+|||||++++...+..+++++|++++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999988877667777766554433     46899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-CCCceEEEEeccccCCCHHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      |+|++++.+++....++..+.......+.|+++|+||+|+.+.....++...+..... ....++++++||++++|++++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  161 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG  161 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence            9999999999998888887766544467999999999998765455555544443222 223467999999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 029446          170 LDWLASTLKEMRA  182 (193)
Q Consensus       170 ~~~l~~~~~~~~~  182 (193)
                      +++|.+.+.+.+.
T Consensus       162 ~~~l~~~l~~~~~  174 (183)
T cd04152         162 LEKLYEMILKRRK  174 (183)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998876553

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=3.6e-33  Score=198.42  Aligned_cols=168  Identities=20%  Similarity=0.254  Sum_probs=132.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (193)
                      ||+++|.+|+|||||+++|..+.+.. +.+|.+..+. .+..  ..+.+.+|||||++++...+..+++++|++++|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            58999999999999999999888764 5566664432 2233  346789999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           95 LDRERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      +++.+|+.+..|+..+.....  ..+.|+|+|+||+|+.+.... .+....+    .+..+++++++||++|.|++++|+
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~SAk~~~~v~~l~~  156 (190)
T cd04144          81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAAL----ARRLGCEFIEASAKTNVNVERAFY  156 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHH----HHHhCCEEEEecCCCCCCHHHHHH
Confidence            999999999999888765322  357899999999998653221 1111111    223445899999999999999999


Q ss_pred             HHHHHHHhhhccCCCCCCc
Q 029446          172 WLASTLKEMRAAGYSSVGT  190 (193)
Q Consensus       172 ~l~~~~~~~~~~~~~~~~~  190 (193)
                      ++.+.+.+++..+.+++..
T Consensus       157 ~l~~~l~~~~~~~~~~~~~  175 (190)
T cd04144         157 TLVRALRQQRQGGQGPKGG  175 (190)
T ss_pred             HHHHHHHHhhcccCCCcCC
Confidence            9999998888777665543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=100.00  E-value=3.1e-32  Score=188.14  Aligned_cols=157  Identities=60%  Similarity=1.072  Sum_probs=139.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   98 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (193)
                      ||+++|.+|+|||||++++++.....+.+|.+.+...+.+....+.+||+||+..+...+..+++++|++++|+|+++++
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~   80 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE   80 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence            68999999999999999999998777788999998888888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHH
Q 029446           99 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  175 (193)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  175 (193)
                      ++.....++..+.......+.|+++|+||+|+......+++.+.+.........++++++||++|.|+++++++|..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878          81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            99999999988877554568999999999999887667777777665544566789999999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=2.4e-32  Score=195.77  Aligned_cols=163  Identities=22%  Similarity=0.264  Sum_probs=130.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      +||+++|++|+|||||+++|.++.+. .+.+|.+.++.  .+..   ..+.+.+||+||++++...+..++++++++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            68999999999999999999998876 45688876653  3333   367899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcCCCCc-eEEEEeccccCCC
Q 029446           92 VDSLDRERIGKAKQEFQAIIKD---PFMLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRK-WHIQGTCALKGDG  165 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  165 (193)
                      ||++++.+|+++..|+..+...   ....+.|+++|+||+|+.+  ....++..+..     +..+ .++++|||++|+|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sak~~~~  155 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFC-----KENGFIGWFETSAKEGIN  155 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCceEEEEeCCCCCC
Confidence            9999999999999888776542   1236789999999999973  22333332221     1222 4799999999999


Q ss_pred             HHHHHHHHHHHHHhhhccCC
Q 029446          166 LYEGLDWLASTLKEMRAAGY  185 (193)
Q Consensus       166 i~~~~~~l~~~~~~~~~~~~  185 (193)
                      ++++|++|.+.+.+......
T Consensus       156 v~e~f~~l~~~l~~~~~~~~  175 (201)
T cd04107         156 IEEAMRFLVKNILANDKNLQ  175 (201)
T ss_pred             HHHHHHHHHHHHHHhchhhH
Confidence            99999999999887654433

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-33  Score=183.04  Aligned_cols=165  Identities=18%  Similarity=0.305  Sum_probs=136.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ++-+|++++|+..+|||||+.++.+..+. .+..|+|+++..-..    +.+++++|||.|+++|+.+.-.++++++++|
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi   98 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   98 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence            46689999999999999999999999887 567888888653222    5689999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|||+++.++|..+..|...+. ...+.+.|+|+|+||||+.++.   -+..+-+...+...++.+|++||+.+.|++++
T Consensus        99 LmyDitNeeSf~svqdw~tqIk-tysw~naqvilvgnKCDmd~eR---vis~e~g~~l~~~LGfefFEtSaK~NinVk~~  174 (193)
T KOG0093|consen   99 LMYDITNEESFNSVQDWITQIK-TYSWDNAQVILVGNKCDMDSER---VISHERGRQLADQLGFEFFETSAKENINVKQV  174 (193)
T ss_pred             EEEecCCHHHHHHHHHHHHHhe-eeeccCceEEEEecccCCccce---eeeHHHHHHHHHHhChHHhhhcccccccHHHH
Confidence            9999999999999988888774 4466899999999999998752   12222222223344557999999999999999


Q ss_pred             HHHHHHHHHhhhcc
Q 029446          170 LDWLASTLKEMRAA  183 (193)
Q Consensus       170 ~~~l~~~~~~~~~~  183 (193)
                      |+.+...+.+....
T Consensus       175 Fe~lv~~Ic~kmse  188 (193)
T KOG0093|consen  175 FERLVDIICDKMSE  188 (193)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999998876643

>cd00879 Sar1 Sar1 subfamily

Probab=100.00  E-value=7.1e-32  Score=191.79  Aligned_cols=164  Identities=34%  Similarity=0.616  Sum_probs=140.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      ..+.++|+++|++|||||||++++.++.+..+.+|.+.+...+...+..+.+||+||+..++..+..+++++|++++|+|
T Consensus        16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D   95 (190)
T cd00879          16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD   95 (190)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence            35689999999999999999999999887777788888888888888999999999999999989999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-----------CCCceEEEEecccc
Q 029446           94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-----------KNRKWHIQGTCALK  162 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~  162 (193)
                      +++..+++....++..+.......+.|+++++||+|+......+++...++....           ....+++++|||++
T Consensus        96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  175 (190)
T cd00879          96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK  175 (190)
T ss_pred             CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence            9999999988889998887655567999999999999876666777666654221           22446799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029446          163 GDGLYEGLDWLASTL  177 (193)
Q Consensus       163 ~~gi~~~~~~l~~~~  177 (193)
                      ++|++++|++|.+.+
T Consensus       176 ~~gv~e~~~~l~~~~  190 (190)
T cd00879         176 RQGYGEAFRWLSQYL  190 (190)
T ss_pred             CCChHHHHHHHHhhC
Confidence            999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=100.00  E-value=3.6e-32  Score=188.92  Aligned_cols=154  Identities=36%  Similarity=0.648  Sum_probs=132.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446           20 VVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   98 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (193)
                      |+++|++|+|||||++++.++.+. .+.||.+.....+....+++.+||+||+++++..+..+++++|++++|+|++++.
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~   81 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE   81 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence            789999999999999999988765 4678888877777788899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-CCCceEEEEecccc------CCCHHHHHH
Q 029446           99 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALK------GDGLYEGLD  171 (193)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~gi~~~~~  171 (193)
                      ++.....|+..+....  .+.|+++|+||+|+.......++...+..... +..++++++|||++      ++||+++|+
T Consensus        82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~  159 (164)
T cd04162          82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS  159 (164)
T ss_pred             HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence            9999999888886543  68999999999999877666666555544433 56778899999998      999999999


Q ss_pred             HHHH
Q 029446          172 WLAS  175 (193)
Q Consensus       172 ~l~~  175 (193)
                      .++.
T Consensus       160 ~~~~  163 (164)
T cd04162         160 QLIN  163 (164)
T ss_pred             HHhc
Confidence            8864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.2e-32  Score=198.36  Aligned_cols=165  Identities=23%  Similarity=0.407  Sum_probs=132.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE--EEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK--VQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      +++||+++|++|+|||||++++.++.+.. +.+|.+.++..  +..   ..+.+.+||++|++.+...+..+++++|+++
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            46899999999999999999999988764 45777766543  322   2478999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      +|||++++++|+++..|+..+.........|+++|+||+|+.+.... .+....+    .+..+++++++||++|+|+++
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sak~g~~v~e  156 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKL----AKDLGMKYIETSARTGDNVEE  156 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHH----HHHhCCEEEEEeCCCCCCHHH
Confidence            99999999999999999998876544456789999999998764221 1111222    123446899999999999999


Q ss_pred             HHHHHHHHHHhhhccC
Q 029446          169 GLDWLASTLKEMRAAG  184 (193)
Q Consensus       169 ~~~~l~~~~~~~~~~~  184 (193)
                      +|++|.+.+.++...+
T Consensus       157 ~f~~l~~~~~~~~~~~  172 (211)
T cd04111         157 AFELLTQEIYERIKRG  172 (211)
T ss_pred             HHHHHHHHHHHHhhcC
Confidence            9999999988776543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=100.00  E-value=6.2e-32  Score=188.32  Aligned_cols=157  Identities=34%  Similarity=0.610  Sum_probs=135.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   98 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (193)
                      +|+++|.+|||||||++++.+.....+.||.+.....+......+.+||+||+..++..+..+++++|++++|+|++++.
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~   80 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD   80 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence            47999999999999999999874446778999888888888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC---CCCceEEEEeccccC------CCHHHH
Q 029446           99 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL---KNRKWHIQGTCALKG------DGLYEG  169 (193)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~------~gi~~~  169 (193)
                      +++++..|+..+.+.....+.|+++|+||+|+.+.....++.+.+....+   ....+++++|||++|      .|+++.
T Consensus        81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~  160 (167)
T cd04161          81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG  160 (167)
T ss_pred             HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence            99999999999887655568999999999999887667777777665543   234567999999998      899999


Q ss_pred             HHHHHH
Q 029446          170 LDWLAS  175 (193)
Q Consensus       170 ~~~l~~  175 (193)
                      |+||..
T Consensus       161 ~~wl~~  166 (167)
T cd04161         161 LRWLLA  166 (167)
T ss_pred             HHHHhc
Confidence            999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=6.9e-33  Score=192.24  Aligned_cols=157  Identities=18%  Similarity=0.262  Sum_probs=124.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeE-EEEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      .+||+++|++|||||||++++..+.+.. +.+|.+..+ ..+..  ..+.+.+|||||++++...+..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            3799999999999999999999988763 456665333 23333  3467889999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      |++++.+++.+..|+..+.......+.|+++|+||+|+.+.... .+....+.    +..+.+++++||++|.|++++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~  156 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQWGCPFYETSAKSKINVDEVFA  156 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHH
Confidence            99999999999999888876544568999999999998753221 11111111    22336899999999999999999


Q ss_pred             HHHHHH
Q 029446          172 WLASTL  177 (193)
Q Consensus       172 ~l~~~~  177 (193)
                      ++.+.+
T Consensus       157 ~l~~~~  162 (163)
T cd04136         157 DLVRQI  162 (163)
T ss_pred             HHHHhc
Confidence            998764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1e-32  Score=191.74  Aligned_cols=157  Identities=18%  Similarity=0.248  Sum_probs=126.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      ++||+++|.+|||||||++++..+.+.. +.+|.+..+. .+..  ..+.+.+|||||++.+...+..+++++|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            4799999999999999999999887764 5567764433 3333  3567889999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      |++++.+++.+..|+..+.......+.|+++|+||+|+.+.... .+....+    .+..+++++++||++|.|++++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~~~~  156 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNL----ARQWGCAFLETSAKAKINVNEIFY  156 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHH----HHHhCCEEEEeeCCCCCCHHHHHH
Confidence            99999999999999999876545578999999999999764221 1111111    122345899999999999999999


Q ss_pred             HHHHHH
Q 029446          172 WLASTL  177 (193)
Q Consensus       172 ~l~~~~  177 (193)
                      ++.+++
T Consensus       157 ~l~~~l  162 (164)
T cd04175         157 DLVRQI  162 (164)
T ss_pred             HHHHHh
Confidence            999876

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=7e-33  Score=194.38  Aligned_cols=158  Identities=20%  Similarity=0.226  Sum_probs=122.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      +||+++|++|+|||||++++..+.+. .+.||.+..+. .+..+  .+.+.+||++|++++...+..+++++|++++|||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d   81 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS   81 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence            69999999999999999999999885 56788876664 34443  4789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH---------HHhhhCCCcCCCCc-eEEEEecccc
Q 029446           94 SLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTPME---------VCEGLGLFDLKNRK-WHIQGTCALK  162 (193)
Q Consensus        94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (193)
                      ++++++|+++.. |...+... . .+.|+|+|+||+|+.+.....+         +..+.+...++..+ ++|++|||++
T Consensus        82 ~~~~~s~~~~~~~w~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          82 VVSPSSFENVKEKWVPEITHH-C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            999999999975 65555432 2 5789999999999865421110         00011111122233 5899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029446          163 GDGLYEGLDWLASTL  177 (193)
Q Consensus       163 ~~gi~~~~~~l~~~~  177 (193)
                      |+|++++|+.+++..
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=4.1e-33  Score=195.86  Aligned_cols=160  Identities=16%  Similarity=0.174  Sum_probs=124.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEE--EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQ--YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      ++||+++|++|+|||||++++.++.+. .+.||.+..+. .+.  ...+.+.+|||+|+++|..+++.+++++|++++||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            479999999999999999999999887 56688776553 222  34688999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcCCCCce-EEEEeccc
Q 029446           93 DSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRKW-HIQGTCAL  161 (193)
Q Consensus        93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  161 (193)
                      |++++.+|+.+ ..|+..+....  ++.|+|+|+||+|+.+...         ...+..+.+...++..++ +|++|||+
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            99999999996 67777765532  5789999999999864200         001111112222344554 79999999


Q ss_pred             cCCC-HHHHHHHHHHHHH
Q 029446          162 KGDG-LYEGLDWLASTLK  178 (193)
Q Consensus       162 ~~~g-i~~~~~~l~~~~~  178 (193)
                      +|+| |+++|+.+.+...
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999998543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=100.00  E-value=7.1e-32  Score=186.68  Aligned_cols=157  Identities=46%  Similarity=0.843  Sum_probs=132.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   97 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (193)
                      +|+++|++|+|||||++++.++.+..+.||.+.++..+.. ....+.+||+||+..+...+..++.++|++++|+|++++
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~   80 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE   80 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence            5899999999999999999999887777888877766655 458999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-CCCceEEEEeccccCCCHHHHHHHHHH
Q 029446           98 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLAS  175 (193)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l~~  175 (193)
                      .++.....++..+++.....+.|+++|+||+|+......+++...+..... ...++++++|||++|+|+++++++|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156          81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            999999999988877544468999999999999766556666666543322 335678999999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=4.8e-33  Score=187.47  Aligned_cols=166  Identities=17%  Similarity=0.234  Sum_probs=137.0

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE----EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      .+..-+||++.|++|+|||||+|++.+..|. .+..|+|.++.+    ++...+-++||||+||++|+++.-.+++++|+
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            3456799999999999999999999999998 567899977654    33345789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCC---CCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPF---MLNSVILVFANKQDMKGAM---TPMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      +++|||++++.+|+++..|..+++.+..   ....|+||++||+|+....   ...+.......   .+.++|||++|||
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~---s~gnipyfEtSAK  161 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK---SKGNIPYFETSAK  161 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH---hcCCceeEEeccc
Confidence            9999999999999999999999998643   3457999999999987631   11122222211   2457799999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhh
Q 029446          162 KGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~~~  181 (193)
                      .+.||++.|..+.+.+....
T Consensus       162 ~~~NV~~AFe~ia~~aL~~E  181 (210)
T KOG0394|consen  162 EATNVDEAFEEIARRALANE  181 (210)
T ss_pred             ccccHHHHHHHHHHHHHhcc
Confidence            99999999999999887655

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=4.9e-32  Score=196.27  Aligned_cols=158  Identities=23%  Similarity=0.317  Sum_probs=132.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ...+||+++|.+|+|||||++++..+.+. .+.+|++.++....+    ..+.+.+|||+|++++..++..++++++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            67799999999999999999999988876 467888877665433    3589999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      +|||++++.+++.+..|+..+....  .+.|+++|+||+|+..... .+++  .+    .+..+++|++|||++|.|+++
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~--~~----~~~~~~~~~e~SAk~~~~i~~  162 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV--TF----HRKKNLQYYEISAKSNYNFEK  162 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH--HH----HHhcCCEEEEcCCCCCCCHHH
Confidence            9999999999999999988886542  5799999999999865322 2222  11    234556899999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029446          169 GLDWLASTLKEM  180 (193)
Q Consensus       169 ~~~~l~~~~~~~  180 (193)
                      +|++|.+.+.+.
T Consensus       163 ~f~~l~~~~~~~  174 (219)
T PLN03071        163 PFLYLARKLAGD  174 (219)
T ss_pred             HHHHHHHHHHcC
Confidence            999999998754

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2.4e-32  Score=190.38  Aligned_cols=158  Identities=22%  Similarity=0.335  Sum_probs=128.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      +.+||+++|++|+|||||++++.++.+. .+.+|.+.++.  .+..  ..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            5689999999999999999999999877 45677776653  3333  34689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      |||++++++|+.+..|+..+... ...+.|+++|+||+|+.+..  ..++... +    ++..+.+++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~~  155 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEA-L----ADEYGIKFLETSAKANINVEE  155 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHH-H----HHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999988887654 23678999999999997542  2222222 1    123445899999999999999


Q ss_pred             HHHHHHHHHHh
Q 029446          169 GLDWLASTLKE  179 (193)
Q Consensus       169 ~~~~l~~~~~~  179 (193)
                      +|+++.+.+..
T Consensus       156 ~~~~i~~~~~~  166 (167)
T cd01867         156 AFFTLAKDIKK  166 (167)
T ss_pred             HHHHHHHHHHh
Confidence            99999998854

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=3e-32  Score=190.34  Aligned_cols=157  Identities=19%  Similarity=0.283  Sum_probs=126.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      ||+++|.+|+|||||++++.++.+. .+.||.+.++..  +..  ..+.+.+||+||++++...+..+++++|++++|+|
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            7999999999999999999999887 567888877643  323  35789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      ++++++++.+..|+..+.+.......|+++|+||+|+.+....   ++....+    .+..+.+++++||++|.|++++|
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~v~~lf  157 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL----AAEMQAEYWSVSALSGENVREFF  157 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH----HHHcCCeEEEEECCCCCCHHHHH
Confidence            9999999999999988866544346789999999998654221   1111111    12334579999999999999999


Q ss_pred             HHHHHHHHh
Q 029446          171 DWLASTLKE  179 (193)
Q Consensus       171 ~~l~~~~~~  179 (193)
                      +.|.+.+.+
T Consensus       158 ~~l~~~~~~  166 (170)
T cd04108         158 FRVAALTFE  166 (170)
T ss_pred             HHHHHHHHH
Confidence            999998754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=5.9e-32  Score=190.68  Aligned_cols=161  Identities=16%  Similarity=0.245  Sum_probs=127.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+++|+.|+|||||++++.++.+. .+.||.+.++.  .+..+  .+.+.+||++|++++...+..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999887 47789987764  34443  478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      |++++.+++++..|+..+.... ....| |+|+||+|+.....   .+.+. ......++..+.++++|||++|.|++++
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l  157 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI  157 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999998886642 23566 68899999964211   11111 1111112344568999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 029446          170 LDWLASTLKEMR  181 (193)
Q Consensus       170 ~~~l~~~~~~~~  181 (193)
                      |+++.+.+.+..
T Consensus       158 f~~l~~~l~~~~  169 (182)
T cd04128         158 FKIVLAKAFDLP  169 (182)
T ss_pred             HHHHHHHHHhcC
Confidence            999999886543

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04155 Arl3 Arl3 subfamily

Probab=100.00  E-value=2.7e-31  Score=186.09  Aligned_cols=163  Identities=45%  Similarity=0.820  Sum_probs=141.7

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      .....++|+++|++|+|||||++++.+..+..+.+|.+.+...+...+..+.+||+||+..+...+..+++++|++++|+
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   89 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI   89 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence            44568999999999999999999999988777778888888888888899999999999988888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  172 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  172 (193)
                      |+++..++.....++..+.......++|+++++||+|+......+++.+.++........++++++||++|+|+++++++
T Consensus        90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  169 (173)
T cd04155          90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNW  169 (173)
T ss_pred             eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHH
Confidence            99999889888888888776544467999999999999877667777777776655566677899999999999999999


Q ss_pred             HHH
Q 029446          173 LAS  175 (193)
Q Consensus       173 l~~  175 (193)
                      |.+
T Consensus       170 l~~  172 (173)
T cd04155         170 VCK  172 (173)
T ss_pred             Hhc
Confidence            975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=3e-32  Score=189.57  Aligned_cols=156  Identities=20%  Similarity=0.332  Sum_probs=125.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+++|++|+|||||++++.++.+. .+.+|.+.++.  .+..  ..+.+.+||+||++++...+..+++++|++++|+
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999886 45678776553  2322  3478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      |++++++++++..|+..+... ...+.|+++|+||+|+.+...  .++..+ +    .+..+++++++||+++.|+++++
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gv~~l~  155 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQ-L----ADQLGFEFFEASAKENINVKQVF  155 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHH-H----HHHcCCEEEEEECCCCCCHHHHH
Confidence            999999999999998887543 235789999999999976422  222211 1    12234589999999999999999


Q ss_pred             HHHHHHHHh
Q 029446          171 DWLASTLKE  179 (193)
Q Consensus       171 ~~l~~~~~~  179 (193)
                      ++|.+.+.+
T Consensus       156 ~~l~~~~~~  164 (165)
T cd01865         156 ERLVDIICD  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999987653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=2.8e-32  Score=189.89  Aligned_cols=156  Identities=24%  Similarity=0.382  Sum_probs=126.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+++|++|+|||||+++++++.+. .+.+|.+.++.  .+..  ....+.+|||||++.+...+..+++++|++++|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999876 45688876654  3333  4678999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCC----CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPF----MLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      |++++.+++.+..|+..+.....    ..+.|+++|+||+|+.+..  ..++... +    .+..+.+++++||++|+|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi  155 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-W----AESKGFKYFETSACTGEGV  155 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-H----HHHcCCeEEEEECCCCCCH
Confidence            99999999999999988876433    2579999999999987421  2222221 1    1233458999999999999


Q ss_pred             HHHHHHHHHHHH
Q 029446          167 YEGLDWLASTLK  178 (193)
Q Consensus       167 ~~~~~~l~~~~~  178 (193)
                      ++++++|.+.+.
T Consensus       156 ~~l~~~l~~~l~  167 (168)
T cd04119         156 NEMFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=3.7e-32  Score=188.41  Aligned_cols=154  Identities=20%  Similarity=0.315  Sum_probs=124.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+++|++|+|||||++++.++.+. .+.+|.+.++.  .+...  .+.+.+||++|++++...+..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999887 45788887654  34443  478899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      |++++++|+.+..|+..+... ...+.|+++|+||.|+...... .+....+    ++..+.++++|||++|.|++++|.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~  155 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKL----AKEYGMDFFETSACTNSNIKESFT  155 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHH----HHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999998887654 2357999999999998764321 1222222    123345899999999999999999


Q ss_pred             HHHHH
Q 029446          172 WLAST  176 (193)
Q Consensus       172 ~l~~~  176 (193)
                      +|.+.
T Consensus       156 ~l~~~  160 (161)
T cd04117         156 RLTEL  160 (161)
T ss_pred             HHHhh
Confidence            99864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=7e-32  Score=193.07  Aligned_cols=162  Identities=20%  Similarity=0.332  Sum_probs=131.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      +..+||+++|++|+|||||++++.+..+. .+.+|.+.++.  .+..  ..+.+.+||+||++.+...+..+++++++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            45799999999999999999999998876 46688876654  3333  3468999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|++++++|+.+..|+..+....  ...|+++|+||+|+.+...  .++..+ +.    +..+++++++||++|.|++
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~gi~  156 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYK-FA----GQMGISLFETSAKENINVE  156 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHH-HH----HHcCCEEEEEECCCCcCHH
Confidence            9999999999999999998876532  5789999999999876422  222221 11    2234689999999999999


Q ss_pred             HHHHHHHHHHHhhhcc
Q 029446          168 EGLDWLASTLKEMRAA  183 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~~  183 (193)
                      ++|++|.+.+......
T Consensus       157 ~lf~~l~~~~~~~~~~  172 (199)
T cd04110         157 EMFNCITELVLRAKKD  172 (199)
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            9999999998876543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.8e-31  Score=185.85  Aligned_cols=155  Identities=23%  Similarity=0.350  Sum_probs=127.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+++|++|||||||++++..+.+. .+.+|.+..+....+    ..+.+.+|||+|++.+...+..++..+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999987765 467888777655443    4588999999999999988889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  172 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  172 (193)
                      |++++.+++.+..|+..+....  .+.|+++|+||+|+.......+.. .+    .+....+++++||++|+|++++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~-~~----~~~~~~~~~e~Sa~~~~~v~~~f~~  153 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQI-TF----HRKKNLQYYEISAKSNYNFEKPFLW  153 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHH-HH----HHHcCCEEEEEeCCCCCChHHHHHH
Confidence            9999999999998888886643  389999999999987443222211 11    1234568999999999999999999


Q ss_pred             HHHHHHh
Q 029446          173 LASTLKE  179 (193)
Q Consensus       173 l~~~~~~  179 (193)
                      |.+.+.+
T Consensus       154 l~~~~~~  160 (166)
T cd00877         154 LARKLLG  160 (166)
T ss_pred             HHHHHHh
Confidence            9998864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=4e-32  Score=196.06  Aligned_cols=164  Identities=16%  Similarity=0.231  Sum_probs=127.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      .+||+|+|++|+|||||+++|..+.++ .+.||++.++. .+..  ..+.+.+|||+|++.|..+++.+++++|++++||
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            379999999999999999999999887 56788876664 2333  4688999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hH--------HHhhhCCCcCCCCc-eEEEEecccc
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-ME--------VCEGLGLFDLKNRK-WHIQGTCALK  162 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (193)
                      |++++++|+++..+|...+.. ..++.|+|+|+||+|+.+.... .+        +..+.+...++..+ .+|++|||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999997655544443 2367999999999999753110 00        11122222233455 3899999999


Q ss_pred             CCC-HHHHHHHHHHHHHhhh
Q 029446          163 GDG-LYEGLDWLASTLKEMR  181 (193)
Q Consensus       163 ~~g-i~~~~~~l~~~~~~~~  181 (193)
                      +++ |+++|+........+.
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         160 SERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhcc
Confidence            985 9999999999776543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1.2e-31  Score=185.65  Aligned_cols=156  Identities=18%  Similarity=0.234  Sum_probs=124.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      .+||+++|++|+|||||++++.++.+. .+.+|.+..+. .+..  ....+.+||+||++++...+..++++++++++|+
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            479999999999999999999998876 45566664442 2233  3466889999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      |++++.+++++..|+..+.+.....+.|+++|+||+|+.+... ..+..+..     +..+.+++++||++|.|++++|+
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~  155 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY  155 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence            9999999999998888887654446899999999999876422 22221111     22345899999999999999999


Q ss_pred             HHHHHH
Q 029446          172 WLASTL  177 (193)
Q Consensus       172 ~l~~~~  177 (193)
                      ++.+.+
T Consensus       156 ~l~~~~  161 (162)
T cd04138         156 TLVREI  161 (162)
T ss_pred             HHHHHh
Confidence            998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=4.7e-32  Score=188.30  Aligned_cols=156  Identities=20%  Similarity=0.293  Sum_probs=123.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      +||+++|++|||||||++++.+..+.. +.+|.+..+. .+..  ..+.+.+|||||++++...+..+++++|++++|+|
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            589999999999999999999988764 4455543322 2222  35788999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      ++++++++++..|+..+.+.....+.|+++|+||+|+.+..  ..++... +    .+..+.+++++||++|.|++++++
T Consensus        81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~~l~~  155 (164)
T smart00173       81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKE-L----ARQWGCPFLETSAKERVNVDEAFY  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHH-H----HHHcCCEEEEeecCCCCCHHHHHH
Confidence            99999999999988887765444678999999999987642  2122111 1    122335899999999999999999


Q ss_pred             HHHHHHH
Q 029446          172 WLASTLK  178 (193)
Q Consensus       172 ~l~~~~~  178 (193)
                      +|.+.+.
T Consensus       156 ~l~~~~~  162 (164)
T smart00173      156 DLVREIR  162 (164)
T ss_pred             HHHHHHh
Confidence            9998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-32  Score=188.67  Aligned_cols=166  Identities=21%  Similarity=0.311  Sum_probs=138.9

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE----EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      .-++-|||+++|++++|||-|+.++..+.|. +..+|.|+.+.+    +..+.++.+||||+||++|+...+.+++++.+
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG   89 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG   89 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence            3467899999999999999999999999998 667999988875    33467899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +++|||+++..+|+++..|+.+++.. ...++++++|+||+||.+.   +.+..+.+...++..+..++++||.++.|++
T Consensus        90 AllVYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe  165 (222)
T KOG0087|consen   90 ALLVYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDATNVE  165 (222)
T ss_pred             eEEEEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEecccccccHH
Confidence            99999999999999999999998765 4479999999999999873   1111111112223444589999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 029446          168 EGLDWLASTLKEMRA  182 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~  182 (193)
                      ++|+.+...++....
T Consensus       166 ~aF~~~l~~I~~~vs  180 (222)
T KOG0087|consen  166 KAFERVLTEIYKIVS  180 (222)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999888876554

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=8.1e-32  Score=194.87  Aligned_cols=159  Identities=21%  Similarity=0.273  Sum_probs=127.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      +||+++|++|+|||||+++|.++.+. .+.+|.+.++..  +..   ..+.+.+||++|++.+...+..+++++|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            58999999999999999999998887 467888866543  333   257899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      ||++++++|+.+..|+..+.+...  ..+.|+++|+||+|+.+... ..+..+.+    .+..+++++++||++|+|+++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~----~~~~~~~~~~iSAktg~gv~~  156 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARF----AQANGMESCLVSAKTGDRVNL  156 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHH----HHHcCCEEEEEECCCCCCHHH
Confidence            999999999999988888765422  24578999999999974321 11111222    122345799999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029446          169 GLDWLASTLKEM  180 (193)
Q Consensus       169 ~~~~l~~~~~~~  180 (193)
                      +|+++.+.+...
T Consensus       157 lf~~l~~~l~~~  168 (215)
T cd04109         157 LFQQLAAELLGV  168 (215)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=6e-32  Score=187.70  Aligned_cols=156  Identities=17%  Similarity=0.235  Sum_probs=124.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-E--EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-K--VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      .+||+++|++|+|||||++++.++.+. .+.+|.+..+. .  +....+.+.+|||||++++...+..+++++|++++|+
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            489999999999999999999988765 44566554333 2  2223478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      |++++.+++.+..|+..+.+.....+.|+++|+||+|+.....  .++. ..+    .+..+++++++||++|.|++++|
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~i~~l~  156 (164)
T cd04145          82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEG-QEL----ARKLKIPYIETSAKDRLNVDKAF  156 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHH-HHH----HHHcCCcEEEeeCCCCCCHHHHH
Confidence            9999999999999988887654446789999999999876422  2222 111    12334589999999999999999


Q ss_pred             HHHHHHH
Q 029446          171 DWLASTL  177 (193)
Q Consensus       171 ~~l~~~~  177 (193)
                      ++|.+.+
T Consensus       157 ~~l~~~~  163 (164)
T cd04145         157 HDLVRVI  163 (164)
T ss_pred             HHHHHhh
Confidence            9998765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1e-31  Score=187.04  Aligned_cols=156  Identities=23%  Similarity=0.365  Sum_probs=125.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      .+||+++|++|+|||||++++.++.+. .+.+|.+.++.  .+..  ....+.+||+||++++...+..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            489999999999999999999998876 44577765543  3333  346899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      ||++++++++++..|+..+.... ..+.|+++|+||+|+.....  .++.. .+    .+..+++++++||++|+|++++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~~v~~~  155 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQ-EF----ADELGIPFLETSAKNATNVEQA  155 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHH-HH----HHHcCCeEEEEECCCCcCHHHH
Confidence            99999999999999988876542 35789999999999865422  22221 11    1234568999999999999999


Q ss_pred             HHHHHHHHH
Q 029446          170 LDWLASTLK  178 (193)
Q Consensus       170 ~~~l~~~~~  178 (193)
                      ++.|.+.+.
T Consensus       156 ~~~i~~~~~  164 (166)
T cd01869         156 FMTMAREIK  164 (166)
T ss_pred             HHHHHHHHH
Confidence            999998875

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=5.2e-32  Score=192.29  Aligned_cols=162  Identities=21%  Similarity=0.234  Sum_probs=125.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (193)
                      ||+++|++|+|||||++++.++.+.. +.||.+..+.. +..  ..+.+.+||++|++.+...+..+++++|++++|||+
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv   81 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV   81 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence            79999999999999999999998874 56777666532 222  357899999999999999999999999999999999


Q ss_pred             CChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHH---------HhhhCCCcCCCC-ceEEEEeccccC
Q 029446           95 LDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV---------CEGLGLFDLKNR-KWHIQGTCALKG  163 (193)
Q Consensus        95 ~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~Sa~~~  163 (193)
                      +++.+|+.+.. |+..+...  ..+.|+++|+||+|+.+.....+.         ....+...++.. .++|++|||++|
T Consensus        82 ~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          82 DSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            99999999874 66666543  257999999999999765322211         111111112222 258999999999


Q ss_pred             CCHHHHHHHHHHHHHhhhc
Q 029446          164 DGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~~~~  182 (193)
                      +|++++|+++.+.+.....
T Consensus       160 ~~v~e~f~~l~~~~~~~~~  178 (189)
T cd04134         160 RGVNEAFTEAARVALNVRP  178 (189)
T ss_pred             CCHHHHHHHHHHHHhcccc
Confidence            9999999999998875443

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.2e-32  Score=180.83  Aligned_cols=167  Identities=21%  Similarity=0.349  Sum_probs=140.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE----E-EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK----V-QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~----~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      .++|+++++|+.-+|||||+..++.+.+.+ ..||+|+++..    + ....+++++|||+||++|++++.+|+++.-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            378999999999999999999999999985 46999988642    2 23578999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      ++|||+++..+|+.+..|+++.......+.+++ .+|++|+|+...   +++..+.+...+..++..++++||++|.||+
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~NVe  162 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGCNVE  162 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence            999999999999999999999877655455555 599999999865   3333333333346677799999999999999


Q ss_pred             HHHHHHHHHHHhhhccC
Q 029446          168 EGLDWLASTLKEMRAAG  184 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~~~  184 (193)
                      +.|..|.+.+......|
T Consensus       163 EAF~mlaqeIf~~i~qG  179 (213)
T KOG0091|consen  163 EAFDMLAQEIFQAIQQG  179 (213)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999888776653

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=9.9e-32  Score=186.98  Aligned_cols=155  Identities=17%  Similarity=0.203  Sum_probs=121.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-E--EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-V--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      +||+++|++|+|||||++++.++.+. .+.+|.+..+.. +  ....+.+.+||+||++++...+..+++.++++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999998876 445666644432 2  2245789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           94 SLDRERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      ++++++++++..|+..+....  ..++.|+++|+||+|+.+.... .+....+    ....++++++|||++|+|++++|
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~SA~~g~~v~~~f  157 (165)
T cd04140          82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAAC----ATEWNCAFMETSAKTNHNVQELF  157 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHH----HHHhCCcEEEeecCCCCCHHHHH
Confidence            999999999998887665421  2357899999999999763221 1111111    12334579999999999999999


Q ss_pred             HHHHHH
Q 029446          171 DWLAST  176 (193)
Q Consensus       171 ~~l~~~  176 (193)
                      ++|.+.
T Consensus       158 ~~l~~~  163 (165)
T cd04140         158 QELLNL  163 (165)
T ss_pred             HHHHhc
Confidence            999764

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04176 Rap2 Rap2 subgroup

Probab=99.98  E-value=7.3e-32  Score=187.19  Aligned_cols=157  Identities=18%  Similarity=0.252  Sum_probs=123.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccee-EEEEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFN-VEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      .+||+++|.+|+|||||++++..+.+.. +.+|.+.. ...+..  ....+.+||+||++++...+..+++++|++++|+
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            4799999999999999999999988874 44555422 223333  3467889999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      |++++.+|+++..|+..+.......+.|+++|+||+|+.+..... +....+.    +..+.+++++||+++.|++++|.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~  156 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA  156 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence            999999999999998888765444689999999999986532211 1112121    22345899999999999999999


Q ss_pred             HHHHHH
Q 029446          172 WLASTL  177 (193)
Q Consensus       172 ~l~~~~  177 (193)
                      ++.+.+
T Consensus       157 ~l~~~l  162 (163)
T cd04176         157 EIVRQM  162 (163)
T ss_pred             HHHHhc
Confidence            998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=5.6e-31  Score=169.92  Aligned_cols=178  Identities=58%  Similarity=1.052  Sum_probs=167.8

Q ss_pred             CchhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHh
Q 029446            1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   80 (193)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (193)
                      ||--+.+++.+....++++++.+|-.++||||++.++..+....+.||+|+++.++.++.+.+.+||.+|++..+..|++
T Consensus         1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh   80 (180)
T KOG0071|consen    1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH   80 (180)
T ss_pred             CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence            66667777777777899999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      |+.+..++|||+|..+.+.+++....+..+++.++..+.|+++.+||-|+.+...++|+...+.+..++.+.+.+.++||
T Consensus        81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a  160 (180)
T KOG0071|consen   81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA  160 (180)
T ss_pred             hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence            99999999999999999999999999999999888889999999999999999999999999999989999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHH
Q 029446          161 LKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~  178 (193)
                      .+|.|+.+-+.|+.+.+.
T Consensus       161 ~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  161 LSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             ccchhHHHHHHHHHhhcc
Confidence            999999999999998763

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.98  E-value=9e-31  Score=182.36  Aligned_cols=157  Identities=36%  Similarity=0.649  Sum_probs=130.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc-------cccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV-------LSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      +|+++|++|+|||||++++.+...       ..+.+|.+.+...+.+....+.+||+||+..+...+..+++++|++++|
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v   80 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV   80 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            589999999999999999976432       1346788888888888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--CCCCceEEEEeccccCCCHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD--LKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|+++++++.....++..+.+.....+.|+++++||+|+.+.....+....+....  .....++++++||++|+|++++
T Consensus        81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  160 (167)
T cd04160          81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG  160 (167)
T ss_pred             EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence            99999989999888888887765556899999999999987655555555443321  2335678999999999999999


Q ss_pred             HHHHHH
Q 029446          170 LDWLAS  175 (193)
Q Consensus       170 ~~~l~~  175 (193)
                      +++|.+
T Consensus       161 ~~~l~~  166 (167)
T cd04160         161 IEWLVE  166 (167)
T ss_pred             HHHHhc
Confidence            999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04112 Rab26 Rab26 subfamily

Probab=99.98  E-value=2e-31  Score=189.60  Aligned_cols=159  Identities=25%  Similarity=0.402  Sum_probs=127.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL--STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      +||+++|++|+|||||++++.++.+.  .+.+|.+.++..  +..  ..+.+.+|||||++++...+..+++++|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999998875  456777665543  333  357899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|++++++++++..|+..+... ...+.|+++|+||+|+....  ..++. +.+.    +..+.+++++||++|+|++++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~-~~l~----~~~~~~~~e~Sa~~~~~v~~l  154 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDG-ERLA----KEYGVPFMETSAKTGLNVELA  154 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHH-HHHH----HHcCCeEEEEeCCCCCCHHHH
Confidence            9999999999999988887654 23478999999999986432  22221 1221    233458999999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 029446          170 LDWLASTLKEMRA  182 (193)
Q Consensus       170 ~~~l~~~~~~~~~  182 (193)
                      +++|.+.+.+...
T Consensus       155 ~~~l~~~~~~~~~  167 (191)
T cd04112         155 FTAVAKELKHRKY  167 (191)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999987753

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04125 RabA_like RabA-like subfamily

Probab=99.98  E-value=2.7e-31  Score=188.51  Aligned_cols=162  Identities=23%  Similarity=0.334  Sum_probs=129.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+++|++|+|||||++++.++.+.. +.+|.+.++.  .+..  ..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            589999999999999999999998874 6778776553  3333  3577899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      |++++++|+++..|+..+.... ..+.|+++|+||+|+.+.... .+....+.    +..+++++++||+++.|++++|+
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~  155 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI  155 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999888876542 246899999999998754221 12222221    23345899999999999999999


Q ss_pred             HHHHHHHhhhccC
Q 029446          172 WLASTLKEMRAAG  184 (193)
Q Consensus       172 ~l~~~~~~~~~~~  184 (193)
                      ++.+.+..+....
T Consensus       156 ~l~~~~~~~~~~~  168 (188)
T cd04125         156 LLVKLIIKRLEEQ  168 (188)
T ss_pred             HHHHHHHHHhhcC
Confidence            9999998766543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.98  E-value=6.5e-32  Score=189.31  Aligned_cols=158  Identities=22%  Similarity=0.262  Sum_probs=119.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      .+||+++|++|+|||||+.++..+.+. .+.||.+..+. .+..  ..+.+.+|||+|++.+...+..+++++|++|+||
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            369999999999999999999998876 45677754432 2333  4578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhh--------hCCCcCCCCc-eEEEEeccc
Q 029446           93 DSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEG--------LGLFDLKNRK-WHIQGTCAL  161 (193)
Q Consensus        93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~--------~~~~~~~~~~-~~~~~~Sa~  161 (193)
                      |++++++|+++.. |+..+...  .++.|+|+|+||+|+.+... .+.+...        .+...++..+ .++++|||+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999974 65555443  25799999999999965321 1111110        0001112233 489999999


Q ss_pred             cCCCHHHHHHHHHHH
Q 029446          162 KGDGLYEGLDWLAST  176 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~  176 (193)
                      +|+|++++|+.+.+.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.98  E-value=2e-30  Score=178.69  Aligned_cols=156  Identities=33%  Similarity=0.635  Sum_probs=134.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446           20 VVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   98 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (193)
                      |+++|++|||||||++++.+..+. .+.||.+.+...+....+.+.+||+||+..++..+..+++.+|++++|+|+++..
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   81 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT   81 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence            789999999999999999998877 5678888888877778899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHH
Q 029446           99 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  175 (193)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  175 (193)
                      ++.....++..+.......+.|+++|+||+|+.+.....+..+.+.........++++++|++++.|+++++++|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159          82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            99888888888876544467899999999998876555566666655545556678999999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PLN03110 Rab GTPase; Provisional

Probab=99.98  E-value=3.3e-31  Score=191.68  Aligned_cols=163  Identities=21%  Similarity=0.336  Sum_probs=132.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      .++.+||+++|++|+|||||+++|.+..+. .+.+|.+.++.  .+..  ..+.+.+||++|++++...+..++++++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            346789999999999999999999998876 56688887754  3433  347899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      ++|||++++.+|+.+..|+..+... ...+.|+++|+||+|+...... .+....+.    ...+++++++||++|.|++
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~  163 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVE  163 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHH
Confidence            9999999999999999998887654 2357999999999998654222 22223222    2345689999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 029446          168 EGLDWLASTLKEMR  181 (193)
Q Consensus       168 ~~~~~l~~~~~~~~  181 (193)
                      ++|+.|.+.+.+..
T Consensus       164 ~lf~~l~~~i~~~~  177 (216)
T PLN03110        164 KAFQTILLEIYHII  177 (216)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887644

>cd01868 Rab11_like Rab11-like

Probab=99.98  E-value=2.4e-31  Score=184.96  Aligned_cols=156  Identities=21%  Similarity=0.382  Sum_probs=125.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      +.+||+++|++|||||||++++.++.+. .+.+|.+.++..  +...  ...+.+||+||+.++...+..++++++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            4589999999999999999999998876 456777765543  3333  3689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      |+|++++.+++.+..|+..+.... ..+.|+++|+||+|+....  ..++... +.    +..+++++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~  155 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKA-FA----EKNGLSFIETSALDGTNVEE  155 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHH-HH----HHcCCEEEEEECCCCCCHHH
Confidence            999999999999999888876542 2468999999999987532  2222222 21    12346899999999999999


Q ss_pred             HHHHHHHHH
Q 029446          169 GLDWLASTL  177 (193)
Q Consensus       169 ~~~~l~~~~  177 (193)
                      +++++.+.+
T Consensus       156 l~~~l~~~i  164 (165)
T cd01868         156 AFKQLLTEI  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999998875

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.3e-31  Score=174.25  Aligned_cols=167  Identities=22%  Similarity=0.303  Sum_probs=139.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ++-+|++++|+.|+|||+|+.++..+++.+ ..+|+|+.+..  ++.  +.++++||||+||++|++..+.|++++-+++
T Consensus         7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl   86 (214)
T KOG0086|consen    7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL   86 (214)
T ss_pred             hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence            467899999999999999999999999884 56899888753  333  6789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|+|++++++|.++..|+.++... ..+++-+|+++||.|+.++.   ++.-......++...+.+.++||++|+|+++.
T Consensus        87 LVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R---~VtflEAs~FaqEnel~flETSa~TGeNVEEa  162 (214)
T KOG0086|consen   87 LVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPER---EVTFLEASRFAQENELMFLETSALTGENVEEA  162 (214)
T ss_pred             EEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhh---hhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence            999999999999999999998654 44788999999999998763   33222222233455567999999999999999


Q ss_pred             HHHHHHHHHhhhccCC
Q 029446          170 LDWLASTLKEMRAAGY  185 (193)
Q Consensus       170 ~~~l~~~~~~~~~~~~  185 (193)
                      |-...+.+..+.+.|.
T Consensus       163 Fl~c~~tIl~kIE~GE  178 (214)
T KOG0086|consen  163 FLKCARTILNKIESGE  178 (214)
T ss_pred             HHHHHHHHHHHHhhcC
Confidence            9999998887776554

>cd01866 Rab2 Rab2 subfamily

Probab=99.98  E-value=3.9e-31  Score=184.47  Aligned_cols=158  Identities=21%  Similarity=0.302  Sum_probs=126.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ..+||+++|.+|+|||||++++.++.+.. +.+|.+.+..  .+..  ....+.+||+||++++...+..+++++|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999988763 4466665543  2333  35789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      |+|++++.+++.+..|+..+.... .++.|+++|+||.|+.+..  ..++... +    ++..+++++++||++++|+++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~i~~  156 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEA-F----AKEHGLIFMETSAKTASNVEE  156 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHH-H----HHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999998886542 3679999999999987532  2222222 1    123456899999999999999


Q ss_pred             HHHHHHHHHHh
Q 029446          169 GLDWLASTLKE  179 (193)
Q Consensus       169 ~~~~l~~~~~~  179 (193)
                      +|.++.+.+.+
T Consensus       157 ~~~~~~~~~~~  167 (168)
T cd01866         157 AFINTAKEIYE  167 (168)
T ss_pred             HHHHHHHHHHh
Confidence            99999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.97  E-value=1.9e-31  Score=184.84  Aligned_cols=152  Identities=19%  Similarity=0.311  Sum_probs=122.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      +||+++|++|+|||||++++.++.+. .+.+|.+.++..  +..    ..+.+.+||+||++++...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            58999999999999999999998876 456777776643  222    35789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      |+|++++++++.+..|+..+....  .+.|+++|+||+|+.....  .++... +    .+..+++++++||+++.|+++
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~~  153 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEA-L----AKRLQLPLFRTSVKDDFNVTE  153 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHH-H----HHHcCCeEEEEECCCCCCHHH
Confidence            999999999999999888875432  5799999999999876422  222211 1    123345899999999999999


Q ss_pred             HHHHHHHH
Q 029446          169 GLDWLAST  176 (193)
Q Consensus       169 ~~~~l~~~  176 (193)
                      ++++|...
T Consensus       154 l~~~l~~~  161 (162)
T cd04106         154 LFEYLAEK  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04124 RabL2 RabL2 subfamily

Probab=99.97  E-value=1.7e-30  Score=180.12  Aligned_cols=155  Identities=15%  Similarity=0.272  Sum_probs=122.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE----EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+++|.+|+|||||++++.++.+.. +.++.+.+...    +....+.+.+|||+|++++...+..+++++|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            589999999999999999999988764 34555544332    2224578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  172 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  172 (193)
                      |++++.+++.+..|+..+.+.  ..+.|+++|+||+|+.... ..+ ...+    .+..+++++++||++|.|++++++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~-~~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~  152 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQK-KFNF----AEKHNLPLYYVSAADGTNVVKLFQD  152 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHH-HHHH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999998888887553  2478999999999985431 111 1111    1223468999999999999999999


Q ss_pred             HHHHHHhh
Q 029446          173 LASTLKEM  180 (193)
Q Consensus       173 l~~~~~~~  180 (193)
                      +.+.+.++
T Consensus       153 l~~~~~~~  160 (161)
T cd04124         153 AIKLAVSY  160 (161)
T ss_pred             HHHHHHhc
Confidence            99887654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01864 Rab19 Rab19 subfamily

Probab=99.97  E-value=1.8e-30  Score=180.57  Aligned_cols=155  Identities=22%  Similarity=0.386  Sum_probs=123.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeE--EEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      +.+||+++|++|+|||||++++..+.+.. +.+|.+.++  ..+..++  ..+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            56899999999999999999999888764 456665443  3444444  689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCc-eEEEEeccccCCCHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLY  167 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~  167 (193)
                      |+|++++.+++.+..|+..+... ...+.|+++|+||+|+.....  ..+... +.    +..+ ..++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~e~Sa~~~~~v~  155 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACT-LA----EKNGMLAVLETSAKESQNVE  155 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHH-HH----HHcCCcEEEEEECCCCCCHH
Confidence            99999999999999998888653 235789999999999876422  112111 11    1111 368999999999999


Q ss_pred             HHHHHHHHH
Q 029446          168 EGLDWLAST  176 (193)
Q Consensus       168 ~~~~~l~~~  176 (193)
                      ++++.+.+.
T Consensus       156 ~~~~~l~~~  164 (165)
T cd01864         156 EAFLLMATE  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=4e-31  Score=182.42  Aligned_cols=153  Identities=12%  Similarity=0.190  Sum_probs=114.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc-ccccceeEEEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (193)
                      +||+++|++|+|||||++++..+.+... .|+.+.....+..++  +.+.+||++|++..     .+++++|++++|||+
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~   75 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSL   75 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEEC
Confidence            5899999999999999999998887643 343333333444444  77999999999752     356889999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCC-CceEEEEeccccCCCHHHHHHHH
Q 029446           95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKN-RKWHIQGTCALKGDGLYEGLDWL  173 (193)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~l  173 (193)
                      +++.+|+++..|+..+.......+.|+++|+||+|+.... .+++....+....+. ..++|++|||++|+||+++|+.+
T Consensus        76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~  154 (158)
T cd04103          76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA  154 (158)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence            9999999999999988766444678999999999985321 111111111111122 24689999999999999999998


Q ss_pred             HHH
Q 029446          174 AST  176 (193)
Q Consensus       174 ~~~  176 (193)
                      .+.
T Consensus       155 ~~~  157 (158)
T cd04103         155 AQK  157 (158)
T ss_pred             Hhh
Confidence            864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=3.3e-32  Score=177.21  Aligned_cols=159  Identities=19%  Similarity=0.304  Sum_probs=132.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      ++.+|+|++|+|||+|+.+|..+.|+ .|..|+|++..  ++..  ..++++|||++|+++|+.+...++++.+++++||
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY   88 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY   88 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence            56789999999999999999999888 57788887764  4443  6799999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  172 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  172 (193)
                      |.++.+||.+...|++++.+..  +..|-++|+||.|..+..-   +..+.+..++...++.+|++||++++|+++.|.-
T Consensus        89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~Rrv---V~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c  163 (198)
T KOG0079|consen   89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRV---VDTEDARAFALQMGIELFETSAKENENVEAMFHC  163 (198)
T ss_pred             ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCcccee---eehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence            9999999999999999997653  5789999999999887521   1111112223466778999999999999999999


Q ss_pred             HHHHHHhhh
Q 029446          173 LASTLKEMR  181 (193)
Q Consensus       173 l~~~~~~~~  181 (193)
                      |.+++.+..
T Consensus       164 it~qvl~~k  172 (198)
T KOG0079|consen  164 ITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHH
Confidence            988876554

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.97  E-value=2.4e-30  Score=183.49  Aligned_cols=159  Identities=20%  Similarity=0.245  Sum_probs=124.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+++|++|+|||||++++.++.+. .+.+|.+.++. .+..   ..+.+.+|||||++++...+..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            48999999999999999999999887 45577666543 2333   3578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCC------CHhHHHhhhCCCcCCCCce-EEEEeccccCC
Q 029446           93 DSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAM------TPMEVCEGLGLFDLKNRKW-HIQGTCALKGD  164 (193)
Q Consensus        93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (193)
                      |++++.+|+++.. |+..+...  ..+.|+|+|+||+|+.+..      ...+. +.+    ++..+. ++++|||++|.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~-~~~----~~~~~~~~~~e~Sa~~~~  153 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQA-ESV----AKKQGAFAYLECSAKTME  153 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHH-HHH----HHHcCCcEEEEccCCCCC
Confidence            9999999999875 55555432  2578999999999987532      11111 111    122333 79999999999


Q ss_pred             CHHHHHHHHHHHHHhhhcc
Q 029446          165 GLYEGLDWLASTLKEMRAA  183 (193)
Q Consensus       165 gi~~~~~~l~~~~~~~~~~  183 (193)
                      |++++|+.+.+.+......
T Consensus       154 ~v~~~f~~l~~~~~~~~~~  172 (187)
T cd04132         154 NVEEVFDTAIEEALKKEGK  172 (187)
T ss_pred             CHHHHHHHHHHHHHhhhhh
Confidence            9999999999998876643

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.5e-31  Score=174.60  Aligned_cols=160  Identities=21%  Similarity=0.295  Sum_probs=133.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--E--EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--V--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      .-|||+++|+.|+|||+|++++..+.|+ ....|+|+++..  +  ....++++||||+|+++|+++..+|++.++++|+
T Consensus         6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil   85 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence            4589999999999999999999999998 467899888653  3  3367899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      ++|++...+|+-+..|+.++-+.. ..+.--|+|+||.|+.+. +.++++.+++.    +.....+.++||++.+|++.+
T Consensus        86 vydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~drrevp~qigeefs----~~qdmyfletsakea~nve~l  160 (213)
T KOG0095|consen   86 VYDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADRREVPQQIGEEFS----EAQDMYFLETSAKEADNVEKL  160 (213)
T ss_pred             EEecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhhhhhhHHHHHHHH----HhhhhhhhhhcccchhhHHHH
Confidence            999999999999999999987653 356677899999998876 33344444443    345557999999999999999


Q ss_pred             HHHHHHHHHhh
Q 029446          170 LDWLASTLKEM  180 (193)
Q Consensus       170 ~~~l~~~~~~~  180 (193)
                      |..+.-.+...
T Consensus       161 f~~~a~rli~~  171 (213)
T KOG0095|consen  161 FLDLACRLISE  171 (213)
T ss_pred             HHHHHHHHHHH
Confidence            99887766543

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.97  E-value=5.3e-31  Score=184.16  Aligned_cols=157  Identities=20%  Similarity=0.367  Sum_probs=125.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCH-HhHHhhhcCCCEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLR-PLWRHYFNNTDGLIY   90 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~   90 (193)
                      .+||+++|++|+|||||++++..+.+. .+.+|.+..+.  .+..  ..+.+.+||++|+++++ ..+..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            589999999999999999999998876 45677766543  3333  34789999999999887 467888899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEecccc---CCCH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALK---GDGL  166 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi  166 (193)
                      |||++++.+++.+..|...+.......+.|+++|+||+|+...... .+....+.    +..++++++|||++   +.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i  157 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV  157 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence            9999999999999999888876544467999999999998754321 22222222    23346899999999   8899


Q ss_pred             HHHHHHHHHHH
Q 029446          167 YEGLDWLASTL  177 (193)
Q Consensus       167 ~~~~~~l~~~~  177 (193)
                      +++|..+.+.+
T Consensus       158 ~~~f~~l~~~~  168 (170)
T cd04115         158 EAIFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHHHh
Confidence            99999998776

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04113 Rab4 Rab4 subfamily

Probab=99.97  E-value=6.5e-31  Score=182.08  Aligned_cols=154  Identities=21%  Similarity=0.347  Sum_probs=122.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+++|++|+|||||++++.++.+. .+.++.+..+.  .+..  ....+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            68999999999999999999998876 44566665543  2333  3478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      |+++++++..+..|+..+... ..++.|+++|+||+|+.....  .++.....     +..+++++++||+++.|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~  154 (161)
T cd04113          81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFA-----QENGLLFLETSALTGENVEEAF  154 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence            999999999999988877543 236899999999999875422  22222211     2234689999999999999999


Q ss_pred             HHHHHHH
Q 029446          171 DWLASTL  177 (193)
Q Consensus       171 ~~l~~~~  177 (193)
                      +++.+.+
T Consensus       155 ~~~~~~~  161 (161)
T cd04113         155 LKCARSI  161 (161)
T ss_pred             HHHHHhC
Confidence            9998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.97  E-value=2.1e-30  Score=184.71  Aligned_cols=151  Identities=23%  Similarity=0.306  Sum_probs=124.7

Q ss_pred             EcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh
Q 029446           23 LGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   97 (193)
Q Consensus        23 ~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (193)
                      +|.+|||||||++++..+.+. .+.+|++.++....+    ..+.+.+|||+|+++|..++..+++++|++++|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            599999999999999988886 467888877754432    468999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446           98 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      .+|+.+..|+..+.+..  .+.|+++|+||+|+.......+.. .    ..+..+++|++|||++|+||+++|++|.+.+
T Consensus        81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i  153 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-T----FHRKKNLQYYDISAKSNYNFEKPFLWLARKL  153 (200)
T ss_pred             HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-H----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999888887643  579999999999986532211111 1    1234567899999999999999999999988


Q ss_pred             Hhh
Q 029446          178 KEM  180 (193)
Q Consensus       178 ~~~  180 (193)
                      .+.
T Consensus       154 ~~~  156 (200)
T smart00176      154 IGD  156 (200)
T ss_pred             Hhc
Confidence            764

Ran is involved in the active transport of proteins through nuclear pores.

>cd04118 Rab24 Rab24 subfamily

Probab=99.97  E-value=1.9e-30  Score=184.84  Aligned_cols=162  Identities=20%  Similarity=0.204  Sum_probs=125.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc--cccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS--TVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~--~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      +||+++|++|+|||||+++|.++.+..  +.+|.+..+.  .+..  ..+.+.+||++|++++...+..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988863  6677776553  3343  346788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      ||++++.+++++..|+..+...  ..+.|+++|+||+|+..... ..++.........+..+++++++||++++|+++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  158 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF  158 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999998888877553  24789999999999864321 11110000000112334579999999999999999


Q ss_pred             HHHHHHHHhhh
Q 029446          171 DWLASTLKEMR  181 (193)
Q Consensus       171 ~~l~~~~~~~~  181 (193)
                      +++.+.+.+..
T Consensus       159 ~~i~~~~~~~~  169 (193)
T cd04118         159 QKVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHHhc
Confidence            99999887654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PLN03118 Rab family protein; Provisional

Probab=99.97  E-value=1.8e-30  Score=187.46  Aligned_cols=163  Identities=23%  Similarity=0.365  Sum_probs=128.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ...+||+++|++|+|||||+++|.+..+..+.+|.+.++.  .+..  ..+.+.+|||||++++...+..+++++|++++
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl   91 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL   91 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            4578999999999999999999999888777788876653  3333  34789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      |||++++++|+++..+|...+.. ....+.|+++|+||+|+...... .+....+    .+..+++++++||+++.|+++
T Consensus        92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~----~~~~~~~~~e~SAk~~~~v~~  167 (211)
T PLN03118         92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMAL----AKEHGCLFLECSAKTRENVEQ  167 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHH----HHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999998765554442 23356899999999998754222 1111111    123345899999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 029446          169 GLDWLASTLKEMR  181 (193)
Q Consensus       169 ~~~~l~~~~~~~~  181 (193)
                      +|++|.+.+.+..
T Consensus       168 l~~~l~~~~~~~~  180 (211)
T PLN03118        168 CFEELALKIMEVP  180 (211)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999887654

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=8.7e-31  Score=182.73  Aligned_cols=158  Identities=17%  Similarity=0.216  Sum_probs=125.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      .+||+++|.+|||||||++++.++.+. .+.+|.+..+. .+..  ..+.+.+||+||++++...+..++++++++++|+
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            479999999999999999999988876 45566664433 2333  3478899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCc-eEEEEeccccCCCHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~  170 (193)
                      |++++++++.+..|...+.......+.|+++++||+|+.+.... .+....+    .+..+ ++++++||+++.|++++|
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~SA~~~~~i~~~f  156 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSL----SQQWGNVPFYETSARKRTNVDEVF  156 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHH----HHHcCCceEEEeeCCCCCCHHHHH
Confidence            99999999999988888766444468999999999998754221 1111111    12223 589999999999999999


Q ss_pred             HHHHHHHH
Q 029446          171 DWLASTLK  178 (193)
Q Consensus       171 ~~l~~~~~  178 (193)
                      +++.+++.
T Consensus       157 ~~i~~~~~  164 (168)
T cd04177         157 IDLVRQII  164 (168)
T ss_pred             HHHHHHHh
Confidence            99998763

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.97  E-value=1.3e-30  Score=180.92  Aligned_cols=157  Identities=22%  Similarity=0.397  Sum_probs=125.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+++|++|+|||||++++.+..+. .+.++.+.++.  .+...  .+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            68999999999999999999988876 34566665543  34443  378999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      |++++.+++.+..|+..+..... .+.|+++|+||+|+..... ..+..+.+    .+..+++++++||++++|++++++
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~~~~i~~l~~  155 (164)
T smart00175       81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAF----AEEHGLPFFETSAKTNTNVEEAFE  155 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHH----HHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999988888765432 5899999999999876321 11222222    123456899999999999999999


Q ss_pred             HHHHHHHh
Q 029446          172 WLASTLKE  179 (193)
Q Consensus       172 ~l~~~~~~  179 (193)
                      +|.+.+.+
T Consensus       156 ~i~~~~~~  163 (164)
T smart00175      156 ELAREILK  163 (164)
T ss_pred             HHHHHHhh
Confidence            99998865

Rab GTPases are implicated in vesicle trafficking.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=4.9e-31  Score=182.84  Aligned_cols=154  Identities=27%  Similarity=0.400  Sum_probs=127.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEE--EE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKV--QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      ||+++|++++|||||+++|.++.+. .+.+|.+.+....  ..  ..+.+.+||++|++++...+..+++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7999999999999999999999887 4567877666543  33  46789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      ++++.+|+++..|+..+..... .+.|+++++||.|+.+.  ...++..+ +    ++..+.+|+++||+++.|+.++|.
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~-~----~~~~~~~~~e~Sa~~~~~v~~~f~  154 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQE-F----AKELGVPYFEVSAKNGENVKEIFQ  154 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHH-H----HHHTTSEEEEEBTTTTTTHHHHHH
T ss_pred             cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHH-H----HHHhCCEEEEEECCCCCCHHHHHH
Confidence            9999999999999998876543 57999999999998862  23222221 1    123335899999999999999999


Q ss_pred             HHHHHHH
Q 029446          172 WLASTLK  178 (193)
Q Consensus       172 ~l~~~~~  178 (193)
                      .+++.+.
T Consensus       155 ~~i~~i~  161 (162)
T PF00071_consen  155 ELIRKIL  161 (162)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999874

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04116 Rab9 Rab9 subfamily

Probab=99.97  E-value=3.9e-30  Score=179.74  Aligned_cols=158  Identities=18%  Similarity=0.254  Sum_probs=124.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ...+||+++|++|+|||||++++.++.+.. +.++.+..+.  .+..  ..+.+.+||+||++++...+..+++++|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            467999999999999999999999888764 4577776543  3333  4578899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCC---CCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPF---MLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      +|||++++.+++.+..|...+.....   ..+.|+++|+||+|+.... ..++..+...    +....+++++||++|.|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~  158 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDATN  158 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCCC
Confidence            99999999999999988887765321   3568999999999986432 2233222111    01123799999999999


Q ss_pred             HHHHHHHHHHH
Q 029446          166 LYEGLDWLAST  176 (193)
Q Consensus       166 i~~~~~~l~~~  176 (193)
                      ++++|+.+++.
T Consensus       159 v~~~~~~~~~~  169 (170)
T cd04116         159 VAAAFEEAVRR  169 (170)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PLN03108 Rab family protein; Provisional

Probab=99.97  E-value=3e-30  Score=185.97  Aligned_cols=161  Identities=19%  Similarity=0.259  Sum_probs=129.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      .+.+||+++|++|+|||||++++.+..+. .+.+|++.++.  .+..  ..+.+.+||++|++.+...+..+++++|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999998776 35677776643  2333  3467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..  ..++..+.     ++..+++++++||+++.|++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~  157 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQF-----AKEHGLIFMEASAKTAQNVE  157 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence            999999999999998888877543 23579999999999987632  22222221     12345689999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 029446          168 EGLDWLASTLKEMR  181 (193)
Q Consensus       168 ~~~~~l~~~~~~~~  181 (193)
                      ++|+++.+.+.++.
T Consensus       158 e~f~~l~~~~~~~~  171 (210)
T PLN03108        158 EAFIKTAAKIYKKI  171 (210)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887654

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.97  E-value=1.7e-30  Score=168.99  Aligned_cols=166  Identities=30%  Similarity=0.625  Sum_probs=157.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      ..++.+.++|..++|||||+|....+++.+ ..||+|.+...+.-..+.+.+||.|||.+++..|..|++++++++||+|
T Consensus        18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VD   97 (186)
T KOG0075|consen   18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVD   97 (186)
T ss_pred             HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEee
Confidence            478999999999999999999999988885 5799999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHH
Q 029446           94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  173 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  173 (193)
                      +.+++.+......+..++..+...++|+++.+||.|+........+.+++++.....+.+.+|.+||+...|++.+.+||
T Consensus        98 aad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wl  177 (186)
T KOG0075|consen   98 AADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWL  177 (186)
T ss_pred             cCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHH
Confidence            99999999999999999999999999999999999999998999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 029446          174 ASTLKEM  180 (193)
Q Consensus       174 ~~~~~~~  180 (193)
                      +++-...
T Consensus       178 i~hsk~~  184 (186)
T KOG0075|consen  178 IEHSKSL  184 (186)
T ss_pred             HHHhhhh
Confidence            9987544

>cd01861 Rab6 Rab6 subfamily

Probab=99.97  E-value=2e-30  Score=179.53  Aligned_cols=154  Identities=23%  Similarity=0.329  Sum_probs=122.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+++|++|+|||||++++.+..+. .+.++.+.++.  .+...  ...+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999998876 44566665543  34333  367999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      |++++++++.+..|+..+..... .+.|+++++||+|+..... ..+....+.    +..+++++++||+++.|++++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~  155 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA----KELNAMFIETSAKAGHNVKELFR  155 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH----HHhCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999998866432 3799999999999954321 222222221    23346899999999999999999


Q ss_pred             HHHHH
Q 029446          172 WLAST  176 (193)
Q Consensus       172 ~l~~~  176 (193)
                      ++.+.
T Consensus       156 ~i~~~  160 (161)
T cd01861         156 KIASA  160 (161)
T ss_pred             HHHHh
Confidence            99875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.97  E-value=2.4e-30  Score=179.50  Aligned_cols=155  Identities=26%  Similarity=0.374  Sum_probs=125.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      ++||+++|++|+|||||++++.++.+.. +.+|.+..+.  .+..  ....+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            4799999999999999999999998875 6677775442  3334  457899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|++++++++....|+..+..... ...|+++++||+|+.+..  ..++..+..     +..+++++++||++|.|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l  154 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYA-----DENGLLFFETSAKTGENVNEL  154 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence            999999999999998888866533 679999999999987432  222222211     222358999999999999999


Q ss_pred             HHHHHHHH
Q 029446          170 LDWLASTL  177 (193)
Q Consensus       170 ~~~l~~~~  177 (193)
                      ++++.+.+
T Consensus       155 ~~~l~~~l  162 (163)
T cd01860         155 FTEIAKKL  162 (163)
T ss_pred             HHHHHHHh
Confidence            99999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=1.2e-29  Score=177.03  Aligned_cols=154  Identities=21%  Similarity=0.199  Sum_probs=123.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      ++.+||+++|++|+|||||++++.++.+.  .+.||.+..+.  .+..  ....+.+||++|++.+...+..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46799999999999999999999999885  46688876543  3444  347899999999999998889999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-----TPMEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      ++|+|++++.+++.+..|+..+...   .+.|+++|+||+|+.+..     ..++..+.++..       .++++||+++
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~  151 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLG  151 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccC
Confidence            9999999999999988888765322   479999999999986532     123333333221       3689999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 029446          164 DGLYEGLDWLASTLK  178 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~  178 (193)
                      .|++++|+.+.+.+.
T Consensus       152 ~~v~~lf~~l~~~~~  166 (169)
T cd01892         152 DSSNELFTKLATAAQ  166 (169)
T ss_pred             ccHHHHHHHHHHHhh
Confidence            999999999998875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=1e-29  Score=176.04  Aligned_cols=154  Identities=21%  Similarity=0.369  Sum_probs=125.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+++|++|+|||||++++.+..+.. +.++.+.++..  +..  ..+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            689999999999999999999988763 56777765542  333  3478999999999999998899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      |++++.+++.+..|+..+.......+.|+++|+||+|+.... ..++..+ +.    +..+++++++||++|+|++++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~~~~  155 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLK-FA----RKHNMLFIETSAKTRDGVQQAFE  155 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH-HH----HHcCCEEEEEecCCCCCHHHHHH
Confidence            999999999999988877665555789999999999997433 2222222 21    23456899999999999999999


Q ss_pred             HHHHH
Q 029446          172 WLAST  176 (193)
Q Consensus       172 ~l~~~  176 (193)
                      .+.+.
T Consensus       156 ~~~~~  160 (161)
T cd01863         156 ELVEK  160 (161)
T ss_pred             HHHHh
Confidence            98875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04142 RRP22 RRP22 subfamily

Probab=99.97  E-value=4.5e-30  Score=183.18  Aligned_cols=162  Identities=20%  Similarity=0.122  Sum_probs=121.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHH--------hHHhhhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRP--------LWRHYFNN   84 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~--------~~~~~~~~   84 (193)
                      +||+++|.+|||||||++++.++.+. .+.||.+....  .+..++  +.+.+|||||...+..        .....+++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999998887 45677764432  333433  7889999999654321        13345789


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccc
Q 029446           85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      +|++++|||++++++|+.+..|+..+....  ...++|+++|+||+|+..... ..+....+.   .+..++++++|||+
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~e~Sak  157 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV---RKSWKCGYLECSAK  157 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH---HHhcCCcEEEecCC
Confidence            999999999999999999998888876643  246799999999999965321 111111111   12345689999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhhc
Q 029446          162 KGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~~~~  182 (193)
                      +|.|++++|+.+.+.+..+.+
T Consensus       158 ~g~~v~~lf~~i~~~~~~~~~  178 (198)
T cd04142         158 YNWHILLLFKELLISATTRGR  178 (198)
T ss_pred             CCCCHHHHHHHHHHHhhccCC
Confidence            999999999999998875553

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=1.6e-29  Score=185.66  Aligned_cols=156  Identities=21%  Similarity=0.179  Sum_probs=124.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-cccccccee-EEEEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFN-VEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~-~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      +||+++|++|+|||||++++.++.+. .+.+|++.. ...+..  ..+.+.+|||+|++.|...+..++.++|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999998887 456776522 233344  34788999999999999888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCC--------CCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           94 SLDRERIGKAKQEFQAIIKDP--------FMLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      ++++.+|+++..|+.++....        ...+.|+|+|+||+|+..  ....+++.+....    ...++++++||++|
T Consensus        81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg  156 (247)
T cd04143          81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN  156 (247)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence            999999999999888886531        235789999999999975  2334444443321    22457999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029446          164 DGLYEGLDWLASTL  177 (193)
Q Consensus       164 ~gi~~~~~~l~~~~  177 (193)
                      .|++++|++|....
T Consensus       157 ~gI~elf~~L~~~~  170 (247)
T cd04143         157 SNLDEMFRALFSLA  170 (247)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.97  E-value=3.5e-30  Score=178.87  Aligned_cols=154  Identities=19%  Similarity=0.282  Sum_probs=122.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC--Ccc-ccccccceeEEE--EEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG--EVL-STVPTIGFNVEK--VQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~--~~~-~~~~t~~~~~~~--~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      +||+++|++|||||||++++..+  .+. .+.+|.+.++..  +..   ....+.+||+||++.+...+..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  444 566777766533  222   4589999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME-VCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      +|+|++++.+++.+..|+..+....  .+.|+++|+||+|+.+...... ..+.+.    ...+.+++++||+++.|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~  154 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE  154 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence            9999999999999988888876542  5689999999999876532211 111121    22345799999999999999


Q ss_pred             HHHHHHHHH
Q 029446          169 GLDWLASTL  177 (193)
Q Consensus       169 ~~~~l~~~~  177 (193)
                      +++.|.+.+
T Consensus       155 l~~~l~~~~  163 (164)
T cd04101         155 PFESLARAF  163 (164)
T ss_pred             HHHHHHHHh
Confidence            999998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.97  E-value=1.3e-30  Score=185.46  Aligned_cols=156  Identities=17%  Similarity=0.178  Sum_probs=114.7

Q ss_pred             ccEEEEEcCCCCCHHHHHH-HHhcCCc-----c-ccccccce-e-EE-----------EEEEcCEEEEEEecCCCCCCHH
Q 029446           17 EMRVVMLGLDAAGKTTILY-KLHIGEV-----L-STVPTIGF-N-VE-----------KVQYKNVIFTVWDVGGQEKLRP   76 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~-~l~~~~~-----~-~~~~t~~~-~-~~-----------~~~~~~~~~~i~D~~g~~~~~~   76 (193)
                      .+||+++|++|+|||||+. ++.++.+     . .+.||++. + +.           .++...+.+.+|||+|+++  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 6655433     2 35677752 2 21           2333468999999999875  3


Q ss_pred             hHHhhhcCCCEEEEEEECCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----------------HhHH
Q 029446           77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMT----------------PMEV  139 (193)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------------~~~~  139 (193)
                      ....+++++|++++|||++++.+|+++.. |+..+....  .+.|+|+|+||+|+.+...                ...+
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V  157 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL  157 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence            45668899999999999999999999974 666654432  4789999999999864210                1122


Q ss_pred             HhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHH
Q 029446          140 CEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  176 (193)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  176 (193)
                      ....+...++..+++|++|||++|+||+++|+.+++.
T Consensus       158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            2222333345566799999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.97  E-value=2.7e-30  Score=181.17  Aligned_cols=157  Identities=22%  Similarity=0.230  Sum_probs=118.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446           20 VVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (193)
                      |+|+|++|+|||||++++.++.+.. +.++....+. .+..  ..+.+.+|||||++++...+..+++++|++++|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            5899999999999999999998864 4566554443 2333  3567999999999999999999999999999999999


Q ss_pred             ChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHH--------HhhhCCCcCCCCce-EEEEeccccCC
Q 029446           96 DRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEV--------CEGLGLFDLKNRKW-HIQGTCALKGD  164 (193)
Q Consensus        96 ~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~--------~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (193)
                      ++++|+++.. |+..+....  ++.|+|+|+||+|+.+.... .+.        ........++..+. ++++|||+++.
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999864 666655432  58999999999998763211 000        00000111223343 79999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 029446          165 GLYEGLDWLASTLK  178 (193)
Q Consensus       165 gi~~~~~~l~~~~~  178 (193)
                      |++++|+.+.+.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=7.4e-30  Score=177.04  Aligned_cols=157  Identities=19%  Similarity=0.278  Sum_probs=125.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      +||+++|++|+|||||++++....+. .+.++.+..+.. ...  ..+.+.+||+||+.++...+..++++++++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999988876 445555444332 222  45789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      ++++.+++....|+..+.......+.|+++|+||+|+.+.  ....+... .    .+..+.+++++||++++|++++++
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l~~  155 (164)
T cd04139          81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN-L----ARQWGVPYVETSAKTRQNVEKAFY  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH-H----HHHhCCeEEEeeCCCCCCHHHHHH
Confidence            9999999999999999887644568999999999998762  22222111 1    112345899999999999999999


Q ss_pred             HHHHHHHh
Q 029446          172 WLASTLKE  179 (193)
Q Consensus       172 ~l~~~~~~  179 (193)
                      ++.+.+.+
T Consensus       156 ~l~~~~~~  163 (164)
T cd04139         156 DLVREIRQ  163 (164)
T ss_pred             HHHHHHHh
Confidence            99987753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01862 Rab7 Rab7 subfamily

Probab=99.97  E-value=5.1e-29  Score=174.22  Aligned_cols=159  Identities=19%  Similarity=0.261  Sum_probs=124.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+++|++|+|||||++++.++.+.. +.+|.+.++.  .+..  ..+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            589999999999999999999988763 3466665543  2333  3467889999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCC---CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCC-ceEEEEeccccCCCH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPF---MLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNR-KWHIQGTCALKGDGL  166 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi  166 (193)
                      |+++++++++...|...+.....   ..+.|+++|+||+|+..+  ...++.....     +.. ..+++++||++|.|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv  155 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWC-----QSNGNIPYFETSAKEAINV  155 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHH-----HHcCCceEEEEECCCCCCH
Confidence            99999999998888777655322   347999999999999842  2233322221     122 258999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 029446          167 YEGLDWLASTLKEMR  181 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~  181 (193)
                      +++++++.+.+.+..
T Consensus       156 ~~l~~~i~~~~~~~~  170 (172)
T cd01862         156 EQAFETIARKALEQE  170 (172)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999887653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=7.9e-30  Score=178.79  Aligned_cols=159  Identities=19%  Similarity=0.210  Sum_probs=118.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      +||+++|++|+|||||++++..+.+.. +.+|....+. .+...  .+.+.+||+||++.+...+..+++++|++++|+|
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            589999999999999999999988763 4555543332 33333  4668899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHH---------hhhCCCcCCCCc-eEEEEeccccC
Q 029446           94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVC---------EGLGLFDLKNRK-WHIQGTCALKG  163 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~Sa~~~  163 (193)
                      ++++.+|+.+...|...+... ..+.|+++|+||+|+.+........         ...+...++..+ .++++|||++|
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  159 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ  159 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence            999999999875444433332 4689999999999986542211111         111111112233 36999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029446          164 DGLYEGLDWLASTL  177 (193)
Q Consensus       164 ~gi~~~~~~l~~~~  177 (193)
                      .|++++|+.+++.+
T Consensus       160 ~gi~~~f~~~~~~~  173 (174)
T cd04135         160 KGLKTVFDEAILAI  173 (174)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.9e-32  Score=177.52  Aligned_cols=165  Identities=20%  Similarity=0.355  Sum_probs=139.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc-ccccceeEEE--EEE-----------cCEEEEEEecCCCCCCHHhHHhh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEK--VQY-----------KNVIFTVWDVGGQEKLRPLWRHY   81 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~~~--~~~-----------~~~~~~i~D~~g~~~~~~~~~~~   81 (193)
                      +-+|++.+|+.|+|||||+.++..+.|... .+|+|+++..  +-+           ..+.+++|||+||++|+++.-.+
T Consensus         8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF   87 (219)
T KOG0081|consen    8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF   87 (219)
T ss_pred             HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence            446888999999999999999999998854 6888888654  222           15789999999999999999999


Q ss_pred             hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446           82 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      ++++-+++++||+++.+||-++..|+.++.......+..+++++||+|+.+.   +.+.+......+...++|||++||-
T Consensus        88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~---R~Vs~~qa~~La~kyglPYfETSA~  164 (219)
T KOG0081|consen   88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ---RVVSEDQAAALADKYGLPYFETSAC  164 (219)
T ss_pred             HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh---hhhhHHHHHHHHHHhCCCeeeeccc
Confidence            9999999999999999999999999999988777788999999999999875   3333333333345677799999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhhcc
Q 029446          162 KGDGLYEGLDWLASTLKEMRAA  183 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~~~~~  183 (193)
                      +|.||++.++.+.+.++++.+.
T Consensus       165 tg~Nv~kave~LldlvM~Rie~  186 (219)
T KOG0081|consen  165 TGTNVEKAVELLLDLVMKRIEQ  186 (219)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988877653

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=1.9e-29  Score=182.93  Aligned_cols=158  Identities=18%  Similarity=0.145  Sum_probs=120.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--ccccccc--eeEEEEEE--cCEEEEEEecCCCCCCHHhHHhhhc-CCCEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL--STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFN-NTDGLIY   90 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~   90 (193)
                      +||+++|++|+|||||++++..+.+.  .+.++.+  .....+..  ....+.+||+||++  ......++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            68999999999999999999887774  4455554  22233333  56789999999998  333445666 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      |||++++.+|+.+..|+..+.......+.|+|+|+||+|+.+.... .+....+    +...+++++++||+++.|++++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----a~~~~~~~~e~SA~~~~gv~~l  154 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRAC----AVVFDCKFIETSAGLQHNVDEL  154 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHH----HHHcCCeEEEecCCCCCCHHHH
Confidence            9999999999999998888766544468999999999998764221 1111112    1233457999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 029446          170 LDWLASTLKEMR  181 (193)
Q Consensus       170 ~~~l~~~~~~~~  181 (193)
                      |+++.+.+....
T Consensus       155 ~~~l~~~~~~~~  166 (221)
T cd04148         155 LEGIVRQIRLRR  166 (221)
T ss_pred             HHHHHHHHHhhh
Confidence            999999986444

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=6.2e-30  Score=177.89  Aligned_cols=155  Identities=17%  Similarity=0.194  Sum_probs=116.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeE-EE--EEEcCEEEEEEecCCCCC-CHHhHHhhhcCCCEEEEEEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNV-EK--VQYKNVIFTVWDVGGQEK-LRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~-~~--~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~i~v~d   93 (193)
                      ||+++|++|+|||||++++..+.+. .+.++.+..+ ..  +....+.+.+||+||+.. .......+++.+|++++|+|
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            6899999999999999999987775 4455553232 22  333456799999999985 34456678899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCC-CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCC-CHHHH
Q 029446           94 SLDRERIGKAKQEFQAIIKDPF-MLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGD-GLYEG  169 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~  169 (193)
                      ++++.+|+.+..|+..+..... ..+.|+++|+||+|+....  ..++. ..+    .+..+.+++++||+++. |++++
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~Sa~~~~~~v~~~  155 (165)
T cd04146          81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEG-EKL----ASELGCLFFEVSAAEDYDGVHSV  155 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHH-HHH----HHHcCCEEEEeCCCCCchhHHHH
Confidence            9999999999888877665432 4579999999999986432  22111 111    12234589999999994 99999


Q ss_pred             HHHHHHHHH
Q 029446          170 LDWLASTLK  178 (193)
Q Consensus       170 ~~~l~~~~~  178 (193)
                      |+.+.+.+.
T Consensus       156 f~~l~~~~~  164 (165)
T cd04146         156 FHELCREVR  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04123 Rab21 Rab21 subfamily

Probab=99.97  E-value=2.5e-29  Score=173.95  Aligned_cols=154  Identities=25%  Similarity=0.319  Sum_probs=121.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeE--EEEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+++|.+|+|||||++++.++.+.. +.++.....  ..+..  ....+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            689999999999999999999988763 334443333  22332  3467999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      |++++++++.+..|+..+..... .+.|+++|+||+|+.....  .++..+..     +..+.+++++||++++|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~  154 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF  154 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999888888765433 3789999999999875422  22222211     2234579999999999999999


Q ss_pred             HHHHHHH
Q 029446          171 DWLASTL  177 (193)
Q Consensus       171 ~~l~~~~  177 (193)
                      +++.+.+
T Consensus       155 ~~l~~~~  161 (162)
T cd04123         155 LSLAKRM  161 (162)
T ss_pred             HHHHHHh
Confidence            9998875

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=1.1e-29  Score=178.06  Aligned_cols=156  Identities=19%  Similarity=0.195  Sum_probs=114.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeE-EEEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      +|++++|++|+|||||++++.++.+.. +.+|....+ ..+..  ..+.+.+||+||++++...+..+++++|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            589999999999999999999888764 445542222 12333  35788999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCcCCCCce-EEEEecccc
Q 029446           94 SLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRKW-HIQGTCALK  162 (193)
Q Consensus        94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (193)
                      ++++.+|+++. .|+..+...  ..+.|+++|+||+|+.....         .+.+........++..+. ++++|||++
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            99999999986 466555432  25789999999999865321         001111011111122333 799999999


Q ss_pred             CCCHHHHHHHHHH
Q 029446          163 GDGLYEGLDWLAS  175 (193)
Q Consensus       163 ~~gi~~~~~~l~~  175 (193)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999988753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=3.9e-29  Score=174.08  Aligned_cols=158  Identities=15%  Similarity=0.182  Sum_probs=116.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE---EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (193)
                      .||+++|++|+|||||++++.++.+....++......   .+....+++.+|||||+..+...+..++..+|++++|+|+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence            3899999999999999999999888644333222221   2223568899999999998888888888999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      +++.+++.+..+|...++... .+.|+++|+||+|+.+....    ++.......  ... ..++++|||+++.|++++|
T Consensus        81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~-~~~~~e~Sa~~~~~v~~lf  156 (166)
T cd01893          81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE--FRE-IETCVECSAKTLINVSEVF  156 (166)
T ss_pred             CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHH--Hhc-ccEEEEeccccccCHHHHH
Confidence            999999998754544444322 47999999999999775432    111110000  001 1279999999999999999


Q ss_pred             HHHHHHHHh
Q 029446          171 DWLASTLKE  179 (193)
Q Consensus       171 ~~l~~~~~~  179 (193)
                      +.+.+.+..
T Consensus       157 ~~~~~~~~~  165 (166)
T cd01893         157 YYAQKAVLH  165 (166)
T ss_pred             HHHHHHhcC
Confidence            999887643

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.96  E-value=7.3e-29  Score=174.82  Aligned_cols=162  Identities=19%  Similarity=0.266  Sum_probs=128.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccee-EEEEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFN-VEKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      .||+++|.+|+|||||++++.++.+.. +.+|.+.. ...+...  ...+.+||+||+.++...+..++..++++++|+|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            589999999999999999999888763 45655433 2333333  4678999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      +++..+++.+..++..+.+.....+.|+|+|+||+|+....  ...+... +.    +..+.+++++||++++|+.++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~  156 (180)
T cd04137          82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE-LA----ESWGAAFLESSARENENVEEAFE  156 (180)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999998876555678999999999987532  2222211 11    22335899999999999999999


Q ss_pred             HHHHHHHhhhccC
Q 029446          172 WLASTLKEMRAAG  184 (193)
Q Consensus       172 ~l~~~~~~~~~~~  184 (193)
                      ++.+.+.......
T Consensus       157 ~l~~~~~~~~~~~  169 (180)
T cd04137         157 LLIEEIEKVENPL  169 (180)
T ss_pred             HHHHHHHHhcCCC
Confidence            9999987666433

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.5e-29  Score=163.97  Aligned_cols=180  Identities=53%  Similarity=0.922  Sum_probs=166.4

Q ss_pred             CchhHHHHhhhhcCC-CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHH
Q 029446            1 MGQAFRKLFDVFFGN-SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWR   79 (193)
Q Consensus         1 ~~~~~~~~~~~~~~~-~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (193)
                      |+..+..+|...+.. +..+++++|-.|+||||+..++.-++...+.||.+++...+.+++.++++||.+|+...+..|+
T Consensus         1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR   80 (182)
T KOG0072|consen    1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR   80 (182)
T ss_pred             CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence            666777777776666 8999999999999999999999888888889999999999999999999999999999999999


Q ss_pred             hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEec
Q 029446           80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC  159 (193)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (193)
                      .|+.+.|++|+|+|.++.+.+......+..++.+.+.++..+++++||.|........|+...+++..++.+.+.++++|
T Consensus        81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS  160 (182)
T KOG0072|consen   81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS  160 (182)
T ss_pred             HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence            99999999999999999999988888888888888888888999999999988888899999999999999999999999


Q ss_pred             cccCCCHHHHHHHHHHHHHhh
Q 029446          160 ALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       160 a~~~~gi~~~~~~l~~~~~~~  180 (193)
                      |.+|+|++...+|+.+.+.++
T Consensus       161 A~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  161 AVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             cccccCCcHHHHHHHHHHhcc
Confidence            999999999999999988654

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=1.8e-28  Score=175.37  Aligned_cols=156  Identities=15%  Similarity=0.178  Sum_probs=123.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc-cccccc-eeEEEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG-FNVEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (193)
                      ||+++|.+|+|||||++++.++.+.. +.+|.. .....+.+.+  +.+.+||+||+..+...+..++.++|++++|+|+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999988764 445543 2333444444  7899999999999999888999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      +++.+++.+..|+..+.......+.|+|+|+||+|+.....   ..+..+...    ...+.+++++||++|.|++++++
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~  156 (198)
T cd04147          81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK  156 (198)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence            99999999999888887765556799999999999865311   111111111    12345799999999999999999


Q ss_pred             HHHHHHH
Q 029446          172 WLASTLK  178 (193)
Q Consensus       172 ~l~~~~~  178 (193)
                      ++.+.+.
T Consensus       157 ~l~~~~~  163 (198)
T cd04147         157 ELLRQAN  163 (198)
T ss_pred             HHHHHhh
Confidence            9998775

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=3.4e-30  Score=169.74  Aligned_cols=166  Identities=20%  Similarity=0.268  Sum_probs=135.4

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-ccccceeE--EE--EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNV--EK--VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~--~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      .+...||++++|..=+|||||+=+++.+.|... .+|.-..+  ..  +......+.||||+||++|..+-+.|+++.++
T Consensus         9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG   88 (218)
T KOG0088|consen    9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG   88 (218)
T ss_pred             CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence            456789999999999999999999999988743 34443222  22  33356789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +++|||++++++|+.+..|+.++... -...+.+++|+||+|+.++   +.+....+...++.-+..|+++||+++.||.
T Consensus        89 alLVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~  164 (218)
T KOG0088|consen   89 ALLVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDNVGIS  164 (218)
T ss_pred             eEEEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccccCHH
Confidence            99999999999999999999998764 3356788999999998875   4444444444456667789999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 029446          168 EGLDWLASTLKEMRA  182 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~  182 (193)
                      ++|+.+...+.+...
T Consensus       165 elFe~Lt~~MiE~~s  179 (218)
T KOG0088|consen  165 ELFESLTAKMIEHSS  179 (218)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999888776653

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.96  E-value=2.6e-28  Score=171.26  Aligned_cols=159  Identities=19%  Similarity=0.233  Sum_probs=118.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeE-EEEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      ..||+++|++|||||||++++.++.+.. +.+|.+..+ ..+..  ..+.+.+|||||++.+...+..++.++|++++|+
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            3689999999999999999999988874 556666543 23333  4568899999999999988888889999999999


Q ss_pred             ECCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhC--------CCcCCCC-ceEEEEeccc
Q 029446           93 DSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLG--------LFDLKNR-KWHIQGTCAL  161 (193)
Q Consensus        93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~Sa~  161 (193)
                      |++++++|+.+.. |...+.+.  ..+.|+++|+||+|+.+..... ++.....        ....+.. ..++++|||+
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  158 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK  158 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999865 55544432  2578999999999987542211 1110000        0000111 2379999999


Q ss_pred             cCCCHHHHHHHHHHHH
Q 029446          162 KGDGLYEGLDWLASTL  177 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~  177 (193)
                      +|.|++++|+++.+.+
T Consensus       159 ~~~~v~~lf~~l~~~~  174 (175)
T cd01870         159 TKEGVREVFEMATRAA  174 (175)
T ss_pred             cCcCHHHHHHHHHHHh
Confidence            9999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04114 Rab30 Rab30 subfamily

Probab=99.96  E-value=2.1e-28  Score=170.77  Aligned_cols=158  Identities=21%  Similarity=0.303  Sum_probs=122.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ...++|+++|++|+|||||++++..+.+. .+.+|.+....  .+...  .+.+.+||+||+..+...+..++..+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            35689999999999999999999987765 34566664433  34443  367899999999999999899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..+. .+..+.+.    +....+++++||++|.|+++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~  159 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEK  159 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHH
Confidence            999999999999888887766443 2357899999999998754322 22222222    12235799999999999999


Q ss_pred             HHHHHHHHH
Q 029446          169 GLDWLASTL  177 (193)
Q Consensus       169 ~~~~l~~~~  177 (193)
                      +++++.+.+
T Consensus       160 l~~~i~~~~  168 (169)
T cd04114         160 LFLDLACRL  168 (169)
T ss_pred             HHHHHHHHh
Confidence            999998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00154 Rab Rab family

Probab=99.96  E-value=7.5e-28  Score=165.67  Aligned_cols=151  Identities=25%  Similarity=0.382  Sum_probs=123.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+++|++++|||||++++.+..+.. +.+|.+.++.....    ....+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            589999999999999999999998875 46777777654433    3578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-C-CCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-G-AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      |++++++++.+..|+..+..... ...|+++++||+|+. + ....++..+..     +..+.+++++||+++.|+++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~  154 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFA-----KENGLLFFETSAKTGENVEELF  154 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHH
Confidence            99999999999998888766532 579999999999996 2 22333333222     2245689999999999999999


Q ss_pred             HHHH
Q 029446          171 DWLA  174 (193)
Q Consensus       171 ~~l~  174 (193)
                      ++|.
T Consensus       155 ~~i~  158 (159)
T cd00154         155 QSLA  158 (159)
T ss_pred             HHHh
Confidence            9886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd00876 Ras Ras family

Probab=99.96  E-value=2.9e-28  Score=168.31  Aligned_cols=154  Identities=23%  Similarity=0.263  Sum_probs=121.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (193)
                      ||+++|++|+|||||++++.+..+. .+.++.+..+. .+...  .+.+.+||+||+..+...+..+++.+|++++|+|+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            6899999999999999999988765 34455542222 23333  57899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446           95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  172 (193)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  172 (193)
                      ++++++++...++..+.........|+++|+||+|+....  ..++.....     +..+.+++++||+++.|+++++++
T Consensus        81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~l~~~  155 (160)
T cd00876          81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALA-----KEWGCPFIETSAKDNINIDEVFKL  155 (160)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHH
Confidence            9999999999999988876544689999999999988632  122222211     122358999999999999999999


Q ss_pred             HHHHH
Q 029446          173 LASTL  177 (193)
Q Consensus       173 l~~~~  177 (193)
                      |.+.+
T Consensus       156 l~~~i  160 (160)
T cd00876         156 LVREI  160 (160)
T ss_pred             HHhhC
Confidence            98753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6e-29  Score=166.17  Aligned_cols=181  Identities=36%  Similarity=0.640  Sum_probs=160.0

Q ss_pred             CchhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC--------ccccccccceeEEEEEEcCEEEEEEecCCCC
Q 029446            1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE--------VLSTVPTIGFNVEKVQYKNVIFTVWDVGGQE   72 (193)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~--------~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~   72 (193)
                      |.-++..+|+.+.....|.|+|+|..++|||||+.+.-...        .....+|+|.+..++......+.+||.+||+
T Consensus         1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe   80 (197)
T KOG0076|consen    1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE   80 (197)
T ss_pred             ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence            55678889999999999999999999999999988764322        1245789999999999999999999999999


Q ss_pred             CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-CcCCCC
Q 029446           73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL-FDLKNR  151 (193)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~  151 (193)
                      ..+++|..++..|+++++++|+++++.|+.....+..+.......+.|+++.+||-|+.+..+.+++...++. ......
T Consensus        81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r  160 (197)
T KOG0076|consen   81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR  160 (197)
T ss_pred             HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence            9999999999999999999999999999999998888888767789999999999999999888888887773 223456


Q ss_pred             ceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          152 KWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       152 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      ..++.++||.+|+||++.+.|+.+.+.++.
T Consensus       161 d~~~~pvSal~gegv~egi~w~v~~~~kn~  190 (197)
T KOG0076|consen  161 DNPFQPVSALTGEGVKEGIEWLVKKLEKNV  190 (197)
T ss_pred             cCccccchhhhcccHHHHHHHHHHHHhhcc
Confidence            778999999999999999999999998773

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=2.7e-28  Score=170.42  Aligned_cols=157  Identities=23%  Similarity=0.277  Sum_probs=116.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-E--EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-K--VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      +||+++|++|+|||||+++|.++.+. .+.++...... .  .....+.+.+||+||++++......+++.+|++++|+|
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999999874 34444433222 2  22346789999999999988888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH--------HHhhhCCCcCCCCce-EEEEeccccCC
Q 029446           94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME--------VCEGLGLFDLKNRKW-HIQGTCALKGD  164 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (193)
                      ++++.++......|...+.... .+.|+++|+||+|+.+......        +............+. +++++||++|+
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE  159 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence            9999999887764444444322 4799999999999877543211        111111111122333 89999999999


Q ss_pred             CHHHHHHHHHH
Q 029446          165 GLYEGLDWLAS  175 (193)
Q Consensus       165 gi~~~~~~l~~  175 (193)
                      |+++++++|.+
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=5.1e-27  Score=169.89  Aligned_cols=163  Identities=23%  Similarity=0.348  Sum_probs=132.1

Q ss_pred             hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCC
Q 029446           11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNT   85 (193)
Q Consensus        11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (193)
                      .......+||+++|++|||||||++++..+.+. .+.+|.+.++....+    ..+.+.+||++|++.+...+..++.++
T Consensus         3 ~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~   82 (215)
T PTZ00132          3 QMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG   82 (215)
T ss_pred             cccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC
Confidence            345567899999999999999999988877775 567888887765443    468999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      +++++|+|+++..++..+..|+..+....  .+.|+++++||+|+.+.....+... +    .+..++.++++||++|.|
T Consensus        83 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~  155 (215)
T PTZ00132         83 QCAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQIT-F----HRKKNLQYYDISAKSNYN  155 (215)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHH-H----HHHcCCEEEEEeCCCCCC
Confidence            99999999999999999999988876542  5789999999999865422222211 1    123445899999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 029446          166 LYEGLDWLASTLKEM  180 (193)
Q Consensus       166 i~~~~~~l~~~~~~~  180 (193)
                      +++.+.+|.+.+...
T Consensus       156 v~~~f~~ia~~l~~~  170 (215)
T PTZ00132        156 FEKPFLWLARRLTND  170 (215)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999988654

>cd04129 Rho2 Rho2 subfamily

Probab=99.96  E-value=1.8e-27  Score=168.72  Aligned_cols=163  Identities=19%  Similarity=0.230  Sum_probs=118.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +.|++++|++|+|||||++++..+.+. .+.+|....+. .+..  ....+.+||++|++.+.......+.++|++++|+
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            368999999999999999999977765 34455544433 2333  3467899999999988877777789999999999


Q ss_pred             ECCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-------hHHHhhhCCCcCCCCc-eEEEEeccccC
Q 029446           93 DSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTP-------MEVCEGLGLFDLKNRK-WHIQGTCALKG  163 (193)
Q Consensus        93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  163 (193)
                      |+++.++++++.. |+..+....  .+.|+|+|+||+|+.+....       ..+........++..+ .++++|||++|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            9999999999975 666554432  46999999999998542110       0000000001112233 37999999999


Q ss_pred             CCHHHHHHHHHHHHHhhh
Q 029446          164 DGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~~~  181 (193)
                      .|++++|+++.+.+...+
T Consensus       159 ~~v~~~f~~l~~~~~~~~  176 (187)
T cd04129         159 EGVDDVFEAATRAALLVR  176 (187)
T ss_pred             CCHHHHHHHHHHHHhccc
Confidence            999999999998886555

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.95  E-value=7.7e-28  Score=170.39  Aligned_cols=163  Identities=24%  Similarity=0.280  Sum_probs=137.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE---EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      +.+||+++|.+|+|||+|+.++..+.+. .+.||++..+.   .++.....+.|+||+|++++......++++.+++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            5789999999999999999999999998 56788876554   3444568899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      |+++++.||+.+..++..+.+.......|+++|+||+|+...   .++..+.+...+..++++|+++||+.+.+++++|.
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~  158 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY  158 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence            999999999999999999966666667899999999999874   22222222222567777899999999999999999


Q ss_pred             HHHHHHHhhh
Q 029446          172 WLASTLKEMR  181 (193)
Q Consensus       172 ~l~~~~~~~~  181 (193)
                      .|.+.+...+
T Consensus       159 ~L~r~~~~~~  168 (196)
T KOG0395|consen  159 ELVREIRLPR  168 (196)
T ss_pred             HHHHHHHhhh
Confidence            9999887633

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.1e-27  Score=155.32  Aligned_cols=164  Identities=18%  Similarity=0.295  Sum_probs=137.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE----EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE----KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ++.||-+++|+-|+|||+|+..+..+.|. +++.|+|+.+.    .+....++++||||.|+++|+...+.+++++-+.+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal   88 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   88 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence            46789999999999999999999999887 67888887764    34446799999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      .|+|++++.++..+..|+.+..+.. .++..+++++||.|+....+ ..+..+.+    ++..+..++++||++|+++++
T Consensus        89 mvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~f----aeengl~fle~saktg~nved  163 (215)
T KOG0097|consen   89 MVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEF----AEENGLMFLEASAKTGQNVED  163 (215)
T ss_pred             EEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHH----HhhcCeEEEEecccccCcHHH
Confidence            9999999999999999999987643 36788999999999987532 22223333    245566899999999999999


Q ss_pred             HHHHHHHHHHhhhcc
Q 029446          169 GLDWLASTLKEMRAA  183 (193)
Q Consensus       169 ~~~~l~~~~~~~~~~  183 (193)
                      .|-...+++++....
T Consensus       164 afle~akkiyqniqd  178 (215)
T KOG0097|consen  164 AFLETAKKIYQNIQD  178 (215)
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999877654

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=1.6e-29  Score=162.18  Aligned_cols=157  Identities=22%  Similarity=0.366  Sum_probs=129.0

Q ss_pred             EEcCCCCCHHHHHHHHhcCCccc--cccccceeEEE----EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446           22 MLGLDAAGKTTILYKLHIGEVLS--TVPTIGFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        22 v~G~~~~GKssli~~l~~~~~~~--~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (193)
                      ++|++++|||+|+-++-.+.|..  ..+|+|+++..    +....+++++|||.||++|++....|++.+|++++++|+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            68999999999999988887763  35889988764    3335789999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           96 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-----MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      +..||++...|+.++... ......+.+++||+|+.++     ++-+.+.+        ..++|+.++||++|.|++-.|
T Consensus        82 nkasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~--------~y~ipfmetsaktg~nvd~af  152 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAE--------AYGIPFMETSAKTGFNVDLAF  152 (192)
T ss_pred             cchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhhccccchHHHHHH--------HHCCCceeccccccccHhHHH
Confidence            999999999999998654 3356778999999999764     23334444        445589999999999999999


Q ss_pred             HHHHHHHHhhhccCCCCC
Q 029446          171 DWLASTLKEMRAAGYSSV  188 (193)
Q Consensus       171 ~~l~~~~~~~~~~~~~~~  188 (193)
                      -.|.+.+.+..- +.++.
T Consensus       153 ~~ia~~l~k~~~-~~~~~  169 (192)
T KOG0083|consen  153 LAIAEELKKLKM-GAPPE  169 (192)
T ss_pred             HHHHHHHHHhcc-CCCCC
Confidence            999998865543 44443

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.95  E-value=9.6e-27  Score=165.88  Aligned_cols=146  Identities=22%  Similarity=0.319  Sum_probs=111.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE-------cCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY-------KNVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~-------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      +||+++|++++|||||++++.++.+. .+.+|++.++.  .+.+       ..+.+.+||++|+++++..+..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            58999999999999999999999887 45688875543  2333       35789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCC------------------CCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCc
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDP------------------FMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFD  147 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~  147 (193)
                      +|+|||++++.+|+++..|+.++....                  ...+.|+|+|+||+|+.++.  ........-+ ..
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~-~i  159 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARG-FV  159 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhh-hH
Confidence            999999999999999999999986531                  12468999999999987642  1111111111 11


Q ss_pred             CCCCceEEEEeccccCC
Q 029446          148 LKNRKWHIQGTCALKGD  164 (193)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~  164 (193)
                      +.+.+.+.++.+|+...
T Consensus       160 a~~~~~~~i~~~c~~~~  176 (202)
T cd04102         160 AEQGNAEEINLNCTNGR  176 (202)
T ss_pred             HHhcCCceEEEecCCcc
Confidence            34556677777887543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.95  E-value=2.5e-26  Score=160.10  Aligned_cols=153  Identities=18%  Similarity=0.168  Sum_probs=109.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc--c-ccccceeEEEEEEcCEEEEEEecCCCCCC----H-----HhHHhhhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS--T-VPTIGFNVEKVQYKNVIFTVWDVGGQEKL----R-----PLWRHYFNNT   85 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~--~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~----~-----~~~~~~~~~~   85 (193)
                      .+|+++|++|+|||||++++.+..+..  + .+|.+.....+......+.+|||||+...    +     .........+
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR   80 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence            479999999999999999999987642  1 23555666666667789999999997421    0     1111112346


Q ss_pred             CEEEEEEECCChhhH--HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           86 DGLIYVVDSLDRERI--GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        86 d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      |++++|+|+++..++  +....|+..+...  ..+.|+|+|+||+|+.......+. +.+    .+....++++|||++|
T Consensus        81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~  153 (168)
T cd01897          81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEI-EEE----EELEGEEVLKISTLTE  153 (168)
T ss_pred             CcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHH-HHh----hhhccCceEEEEeccc
Confidence            899999999987543  5555666665432  147899999999999765333321 111    1234568999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029446          164 DGLYEGLDWLASTL  177 (193)
Q Consensus       164 ~gi~~~~~~l~~~~  177 (193)
                      .|++++++++.+.+
T Consensus       154 ~gi~~l~~~l~~~~  167 (168)
T cd01897         154 EGVDEVKNKACELL  167 (168)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=5.4e-26  Score=158.64  Aligned_cols=155  Identities=23%  Similarity=0.177  Sum_probs=110.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc--c-cccccceeEEEEEEcCE-EEEEEecCCCCC----C---HHhHHhhhcCCCE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL--S-TVPTIGFNVEKVQYKNV-IFTVWDVGGQEK----L---RPLWRHYFNNTDG   87 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~~-~~~i~D~~g~~~----~---~~~~~~~~~~~d~   87 (193)
                      +|+++|.+|||||||+|++.+....  . ..+|....+..+..... .+.+|||||..+    .   ...+...+..+|+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~   81 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL   81 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence            6899999999999999999976542  1 12344445555555554 899999999632    1   1122223456999


Q ss_pred             EEEEEECCCh-hhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           88 LIYVVDSLDR-ERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        88 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      +++|+|++++ .+++....|...+.... ...+.|+++|+||+|+.+.....+....+..   +....+++++||+++.|
T Consensus        82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~g  158 (170)
T cd01898          82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK---ELWGKPVFPISALTGEG  158 (170)
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh---hCCCCCEEEEecCCCCC
Confidence            9999999998 78888887777765432 1246899999999999775443333222211   11345799999999999


Q ss_pred             HHHHHHHHHHH
Q 029446          166 LYEGLDWLAST  176 (193)
Q Consensus       166 i~~~~~~l~~~  176 (193)
                      ++++++++.+.
T Consensus       159 i~~l~~~i~~~  169 (170)
T cd01898         159 LDELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04171 SelB SelB subfamily

Probab=99.94  E-value=5.9e-26  Score=157.43  Aligned_cols=149  Identities=21%  Similarity=0.086  Sum_probs=104.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC---cc-cc--ccccceeEEEEEEc-CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE---VL-ST--VPTIGFNVEKVQYK-NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~---~~-~~--~~t~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      +.|+++|++|+|||||+++|.+..   +. +.  ..|.+..+..+... ...+.+|||||++++......+++++|++++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            468999999999999999999643   22 11  23445555555554 7789999999999888777778889999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           91 VVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        91 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      |+|+++   +++.+.+.    . ....  ...|+++|+||+|+.+....    +++.+.+...  ...+.+++++||+++
T Consensus        81 V~d~~~~~~~~~~~~~~----~-~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~  151 (164)
T cd04171          81 VVAADEGIMPQTREHLE----I-LELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTG  151 (164)
T ss_pred             EEECCCCccHhHHHHHH----H-HHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCC
Confidence            999986   33333221    1 1111  12489999999999764211    2222222211  013568999999999


Q ss_pred             CCHHHHHHHHHH
Q 029446          164 DGLYEGLDWLAS  175 (193)
Q Consensus       164 ~gi~~~~~~l~~  175 (193)
                      +|++++++.+.+
T Consensus       152 ~~v~~l~~~l~~  163 (164)
T cd04171         152 EGIEELKEYLDE  163 (164)
T ss_pred             cCHHHHHHHHhh
Confidence            999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.94  E-value=2.5e-28  Score=164.08  Aligned_cols=163  Identities=18%  Similarity=0.264  Sum_probs=136.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE----EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ..+|++|+|+.++||||+|+++|.+-|. ++..|+++++..    +...++.+.+||++|+++|..+...|++++.+.++
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL   98 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL   98 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence            5689999999999999999999999887 677888887653    44567889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      ||+.+++.+|++...|..++..+.  ..+|.++|-||+|+.+...   +...+....++..+..++.+|++...|+..+|
T Consensus        99 VFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~---~~~~evE~lak~l~~RlyRtSvked~NV~~vF  173 (246)
T KOG4252|consen   99 VFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQ---MDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF  173 (246)
T ss_pred             EEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhh---cchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence            999999999999999999997754  5799999999999987521   11111111223445578999999999999999


Q ss_pred             HHHHHHHHhhhcc
Q 029446          171 DWLASTLKEMRAA  183 (193)
Q Consensus       171 ~~l~~~~~~~~~~  183 (193)
                      ..|+.++.++...
T Consensus       174 ~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  174 AYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988766543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.94  E-value=1.2e-25  Score=179.46  Aligned_cols=166  Identities=22%  Similarity=0.273  Sum_probs=116.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccccccce----eEEEEEEcCEEEEEEecCCCCC--------CHHhHHhhhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGF----NVEKVQYKNVIFTVWDVGGQEK--------LRPLWRHYFN   83 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   83 (193)
                      ..++|+|+|.+|||||||+|++++.......++.++    ....+.+.+..+.+|||||.+.        +...+..+++
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            457999999999999999999998765433333332    3344556778899999999763        3344566788


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      .+|++++|+|+++..+...  ..+...+..   .++|+|+|+||+|+............++.      + ..+++||++|
T Consensus       117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~~~~~~~~~g~------~-~~~~iSA~~g  184 (472)
T PRK03003        117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEADAAALWSLGL------G-EPHPVSALHG  184 (472)
T ss_pred             hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccchhhHHHHhcCC------C-CeEEEEcCCC
Confidence            9999999999998755432  222233332   47899999999998653211111111111      1 2478999999


Q ss_pred             CCHHHHHHHHHHHHHhhhc-------------cCCCCCCcCCC
Q 029446          164 DGLYEGLDWLASTLKEMRA-------------AGYSSVGTSSF  193 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~~~~-------------~~~~~~~~~~~  193 (193)
                      .|+++++++|.+.+.+...             -|.+++|||||
T Consensus       185 ~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSL  227 (472)
T PRK03003        185 RGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSL  227 (472)
T ss_pred             CCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHH
Confidence            9999999999998865211             27889998874

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.94  E-value=7.6e-26  Score=146.47  Aligned_cols=165  Identities=41%  Similarity=0.735  Sum_probs=152.8

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcC-EEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN-VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      .+++.++++++|-.++|||||++.|.+.......||.|++...+.+.+ ..+.+||.+|+...+..|..|+.+.|++|||
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV   92 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV   92 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence            447899999999999999999999998888888999999999998854 9999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      +|.++...|+++.+.+.+++........|+.+..||-|+......++....+++..++.+.+.+.+|||.+++|+.+-.+
T Consensus        93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~  172 (185)
T KOG0074|consen   93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSD  172 (185)
T ss_pred             EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcch
Confidence            99999999999999999998887788899999999999999888899999999888888899999999999999999888


Q ss_pred             HHHHHH
Q 029446          172 WLASTL  177 (193)
Q Consensus       172 ~l~~~~  177 (193)
                      |+....
T Consensus       173 wv~sn~  178 (185)
T KOG0074|consen  173 WVQSNP  178 (185)
T ss_pred             hhhcCC
Confidence            876544

>cd01878 HflX HflX subfamily

Probab=99.94  E-value=2.7e-25  Score=159.63  Aligned_cols=154  Identities=20%  Similarity=0.196  Sum_probs=110.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---cccccceeEEEEEEcC-EEEEEEecCCCCC---------CHHhHHh
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLS---TVPTIGFNVEKVQYKN-VIFTVWDVGGQEK---------LRPLWRH   80 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~i~D~~g~~~---------~~~~~~~   80 (193)
                      .+..++|+++|++|||||||+|++++..+..   ..+|.......+...+ ..+.+|||||..+         +...+ .
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            3556899999999999999999999986431   2455555555555544 4899999999732         11111 2


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      .+.++|++++|+|++++.++.....+...+ ......+.|+++|+||+|+.+.....   .     .......+++++||
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~-----~~~~~~~~~~~~Sa  187 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---E-----RLEAGRPDAVFISA  187 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---H-----HhhcCCCceEEEEc
Confidence            356899999999999888777665444433 32233578999999999997653222   1     12234457999999


Q ss_pred             ccCCCHHHHHHHHHHHH
Q 029446          161 LKGDGLYEGLDWLASTL  177 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~  177 (193)
                      +++.|+++++++|.+.+
T Consensus       188 ~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         188 KTGEGLDELLEAIEELL  204 (204)
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            99999999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=2.4e-25  Score=169.56  Aligned_cols=160  Identities=22%  Similarity=0.171  Sum_probs=118.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEE-cCEEEEEEecCCCCC-------CHHhHHhhhcCCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQY-KNVIFTVWDVGGQEK-------LRPLWRHYFNNTD   86 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~-~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d   86 (193)
                      ..|+++|.||||||||+|++++....  .+ .+|...+...+.+ +..++.+||+||..+       ....+...++.++
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~  238 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR  238 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence            57999999999999999999986533  33 4677777777777 567899999999532       2222334456799


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCcCCCCceEEEEeccccCC
Q 029446           87 GLIYVVDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPME-VCEGLGLFDLKNRKWHIQGTCALKGD  164 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (193)
                      ++++|+|+++.++++....|..++.... ...++|+++|+||+|+.+.....+ ..+..    .+..+.+++++||++++
T Consensus       239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~  314 (335)
T PRK12299        239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGE  314 (335)
T ss_pred             EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCC
Confidence            9999999998878888888877775532 234789999999999976533221 11111    12233579999999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q 029446          165 GLYEGLDWLASTLKEMR  181 (193)
Q Consensus       165 gi~~~~~~l~~~~~~~~  181 (193)
                      |+++++++|.+.+.+..
T Consensus       315 GI~eL~~~L~~~l~~~~  331 (335)
T PRK12299        315 GLDELLRALWELLEEAR  331 (335)
T ss_pred             CHHHHHHHHHHHHHhhh
Confidence            99999999999886543

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=2.6e-25  Score=156.54  Aligned_cols=149  Identities=15%  Similarity=0.174  Sum_probs=107.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC-------cc-cccc------ccceeEE----EE-----EEcCEEEEEEecCCCCCCH
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE-------VL-STVP------TIGFNVE----KV-----QYKNVIFTVWDVGGQEKLR   75 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~-------~~-~~~~------t~~~~~~----~~-----~~~~~~~~i~D~~g~~~~~   75 (193)
                      +|+++|++++|||||+++|++..       +. .+.+      +.+.+..    .+     ....+.+.+|||||+.++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742       11 1112      2223322    12     2246789999999999999


Q ss_pred             HhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcCCCCc
Q 029446           76 PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRK  152 (193)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~  152 (193)
                      ..+..+++++|++++|+|+++..+.+....|.. ...    .++|+++|+||+|+.+....   +++.+.++..     .
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~  151 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P  151 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence            999999999999999999998766655544433 222    46889999999998653211   2333333221     1


Q ss_pred             eEEEEeccccCCCHHHHHHHHHHHH
Q 029446          153 WHIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus       153 ~~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      ..++++||++|+|+++++++|.+.+
T Consensus       152 ~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         152 SEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             ccEEEeeccCCCCHHHHHHHHHhhC
Confidence            2589999999999999999998875

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.93  E-value=2.7e-26  Score=159.42  Aligned_cols=165  Identities=22%  Similarity=0.252  Sum_probs=127.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE---EEE-EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE---KVQ-YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ....|+.|||+.++|||+|+..+..+.|+ .+.||+-.++.   .+. ...+.+.+|||.||++|..+++..+.++|+++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            35689999999999999999999999988 56788865543   343 56789999999999999999988999999999


Q ss_pred             EEEECCChhhHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhh--------hCCCcCCCCc-eEEEEe
Q 029446           90 YVVDSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEG--------LGLFDLKNRK-WHIQGT  158 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~--------~~~~~~~~~~-~~~~~~  158 (193)
                      +||++.++.+|+++.. |+.++.+. . ++.|+|+|++|.||.+..... ++.+.        .+...++..+ ..|++|
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~-c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHH-C-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhh-C-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            9999999999999775 55555443 3 899999999999999532111 11110        0111112233 479999


Q ss_pred             ccccCCCHHHHHHHHHHHHHhhh
Q 029446          159 CALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       159 Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      ||++..|++++|+..+.......
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~  182 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPP  182 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhccc
Confidence            99999999999999988876543

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.93  E-value=8.2e-25  Score=152.34  Aligned_cols=154  Identities=26%  Similarity=0.177  Sum_probs=109.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeEEEEEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNVEKVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      .|+++|.+|+|||||+++|..+.+...   .+|.......+..   ....+.+|||||+..+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            589999999999999999998876642   2333333334444   3678999999999999988888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh---hhCCCc--CCCCceEEEEeccccCCCHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCE---GLGLFD--LKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      |+++....+.. ..+..+ ..   .+.|+++|+||+|+.... ...+..   .+....  .....++++++||++++|++
T Consensus        82 d~~~~~~~~~~-~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (168)
T cd01887          82 AADDGVMPQTI-EAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID  155 (168)
T ss_pred             ECCCCccHHHH-HHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence            99874322211 122222 21   468999999999987542 222221   121110  11234689999999999999


Q ss_pred             HHHHHHHHHHH
Q 029446          168 EGLDWLASTLK  178 (193)
Q Consensus       168 ~~~~~l~~~~~  178 (193)
                      +++++|.++..
T Consensus       156 ~l~~~l~~~~~  166 (168)
T cd01887         156 DLLEAILLLAE  166 (168)
T ss_pred             HHHHHHHHhhh
Confidence            99999988764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PLN00023 GTP-binding protein; Provisional

Probab=99.93  E-value=3.9e-24  Score=159.78  Aligned_cols=122  Identities=21%  Similarity=0.382  Sum_probs=103.4

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE---------------cCEEEEEEecCCCCC
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY---------------KNVIFTVWDVGGQEK   73 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~---------------~~~~~~i~D~~g~~~   73 (193)
                      ..+...+||+++|+.|||||||++++.++.+. .+.+|++.++.  .+.+               ..+.+.||||+|+++
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            45667899999999999999999999998886 45688887653  3333               247799999999999


Q ss_pred             CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCC-----------CCCCeEEEEEeCCCCCCC
Q 029446           74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF-----------MLNSVILVFANKQDMKGA  133 (193)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~Dl~~~  133 (193)
                      |+.++..++++++++|+|||++++.+++++..|+..+.....           ..+.|+|||+||+|+...
T Consensus        96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023         96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence            999999999999999999999999999999999998875421           235899999999999654

>PRK04213 GTP-binding protein; Provisional

Probab=99.93  E-value=9.8e-26  Score=161.59  Aligned_cols=163  Identities=23%  Similarity=0.280  Sum_probs=106.5

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEEEEEcCEEEEEEecCC-----------CCCCHHhHHh
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKVQYKNVIFTVWDVGG-----------QEKLRPLWRH   80 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~   80 (193)
                      ++...++|+++|.+|+|||||+|++.+..+.. ..+++......+...  .+.+|||||           ++.++..+..
T Consensus         5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (201)
T PRK04213          5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR   82 (201)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence            34567899999999999999999999877542 233333333333333  689999999           4556655555


Q ss_pred             hhc----CCCEEEEEEECCChhhH-HH--------HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCC
Q 029446           81 YFN----NTDGLIYVVDSLDRERI-GK--------AKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGL  145 (193)
Q Consensus        81 ~~~----~~d~~i~v~d~~~~~s~-~~--------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~  145 (193)
                      ++.    .++++++|+|.+....+ +.        ....+......   .+.|+++|+||+|+.+..  ..+++.+.++.
T Consensus        83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~  159 (201)
T PRK04213         83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGL  159 (201)
T ss_pred             HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcC
Confidence            543    46788899998643211 00        00111222222   478999999999987643  23344454543


Q ss_pred             C-cCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          146 F-DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       146 ~-~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      . ..+..+.+++++||++| |+++++++|.+.+.+..
T Consensus       160 ~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        160 YPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             CccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence            1 11222346899999999 99999999999876544

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.93  E-value=3.1e-24  Score=164.70  Aligned_cols=151  Identities=19%  Similarity=0.143  Sum_probs=110.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc--c-cccccceeEEEEEE-cCEEEEEEecCCCC---------CCHHhHHhh
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--S-TVPTIGFNVEKVQY-KNVIFTVWDVGGQE---------KLRPLWRHY   81 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~-~~~~~~i~D~~g~~---------~~~~~~~~~   81 (193)
                      ...++|+++|.+|+|||||+|+|++....  + ..+|.+.....+.. ++..+.+|||||..         .++..+ ..
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            34599999999999999999999998643  2 35677777777777 56899999999972         233332 24


Q ss_pred             hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446           82 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      +.++|++++|+|++++.+.+....|. .++......+.|+|+|+||+|+.+..   ++.....      ...+++++||+
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~------~~~~~i~iSAk  335 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE------GYPEAVFVSAK  335 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCChH---hHHHHHh------CCCCEEEEEcc
Confidence            68899999999999988776654433 33333233578999999999987542   2221111      11258999999


Q ss_pred             cCCCHHHHHHHHHHH
Q 029446          162 KGDGLYEGLDWLAST  176 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~  176 (193)
                      +|.|+++++++|.+.
T Consensus       336 tg~GI~eL~~~I~~~  350 (351)
T TIGR03156       336 TGEGLDLLLEAIAER  350 (351)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=7e-24  Score=145.63  Aligned_cols=153  Identities=21%  Similarity=0.267  Sum_probs=115.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      .+||+++|.+|+|||||++++.+..+. .+.++.+.+...  +....  ..+.+||+||+..+...+..++++++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            479999999999999999999998854 344555555544  45555  7899999999999999999889999999999


Q ss_pred             EECCCh-hhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           92 VDSLDR-ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|.... .++.... .+...+..... .+.|+++++||+|+.......+....+..    ....+++++||+++.|++++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~  155 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSA  155 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHH
Confidence            999876 6666655 44444444322 27899999999999775433333333322    22346999999999999999


Q ss_pred             HHHHH
Q 029446          170 LDWLA  174 (193)
Q Consensus       170 ~~~l~  174 (193)
                      +++|.
T Consensus       156 ~~~l~  160 (161)
T TIGR00231       156 FKIVE  160 (161)
T ss_pred             HHHhh
Confidence            99874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=3.6e-25  Score=150.19  Aligned_cols=133  Identities=21%  Similarity=0.177  Sum_probs=93.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCC-----CCHHhHHhhhcCCCEEEEEEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQE-----KLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      ||+++|++|+|||||+|+|.+..+. +.+|.+..+     ..   .+|||||+.     .+..... .++++|++++|+|
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~-----~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d   71 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEY-----ND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS   71 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc-cccceeEEE-----cC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence            8999999999999999999988653 334443332     22   689999973     2333333 4789999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCc-eEEEEeccccCCCHHHHHH
Q 029446           94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~  171 (193)
                      ++++.++... .| ....      ..|+++|+||+|+.+... .++..+..     +..+ .+++++||+++.|++++++
T Consensus        72 ~~~~~s~~~~-~~-~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        72 ATDPESRFPP-GF-ASIF------VKPVIGLVTKIDLAEADVDIERAKELL-----ETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             CCCCCcCCCh-hH-HHhc------cCCeEEEEEeeccCCcccCHHHHHHHH-----HHcCCCcEEEEecCCCCCHHHHHH
Confidence            9999887552 23 2221      248999999999875322 22221111     1112 2699999999999999999


Q ss_pred             HHH
Q 029446          172 WLA  174 (193)
Q Consensus       172 ~l~  174 (193)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.93  E-value=4.5e-24  Score=170.40  Aligned_cols=161  Identities=14%  Similarity=0.095  Sum_probs=112.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc--cc--ccccceeEEEEEEcCEEEEEEecCCCC----------CCHHhH-Hh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--ST--VPTIGFNVEKVQYKNVIFTVWDVGGQE----------KLRPLW-RH   80 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~-~~   80 (193)
                      ..++|+++|.+|+|||||+|+|++....  ..  +.|.......+..++..+.+|||||..          .+.... ..
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~  289 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA  289 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence            4689999999999999999999988753  22  223333334556677889999999952          222222 34


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      +++++|++++|+|++++.+++... ++..+..    .+.|+|+|+||+|+.+.....................+++++||
T Consensus       290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA  364 (472)
T PRK03003        290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA  364 (472)
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence            578999999999999887777663 3444432    47899999999999764322222222211111223357999999


Q ss_pred             ccCCCHHHHHHHHHHHHHhhh
Q 029446          161 LKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      ++|.|++++|+.+.+.+....
T Consensus       365 k~g~gv~~lf~~i~~~~~~~~  385 (472)
T PRK03003        365 KTGRAVDKLVPALETALESWD  385 (472)
T ss_pred             CCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999998775443

>PRK15494 era GTPase Era; Provisional

Probab=99.92  E-value=2.6e-24  Score=164.82  Aligned_cols=156  Identities=18%  Similarity=0.226  Sum_probs=109.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCC-CHHh-------HHhhh
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEK-LRPL-------WRHYF   82 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~-------~~~~~   82 (193)
                      .+.++|+++|.+|+|||||+|+|.+..+..+    .+|.......+..++.++.+|||||..+ +..+       ....+
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l  129 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL  129 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence            4667999999999999999999999877532    2333444455666788999999999743 2221       12346


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446           83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALK  162 (193)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (193)
                      .++|++++|+|..+  +++....++...+..   .+.|.|+|+||+|+.+. ...+..+.+..   ......++++||++
T Consensus       130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSAkt  200 (339)
T PRK15494        130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISALS  200 (339)
T ss_pred             hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEeccC
Confidence            79999999999865  445554444443332   34677899999998654 23333333321   11224799999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 029446          163 GDGLYEGLDWLASTLKE  179 (193)
Q Consensus       163 ~~gi~~~~~~l~~~~~~  179 (193)
                      |.|+++++++|.+.+.+
T Consensus       201 g~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        201 GKNIDGLLEYITSKAKI  217 (339)
T ss_pred             ccCHHHHHHHHHHhCCC
Confidence            99999999999988754

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.92  E-value=7.2e-24  Score=150.17  Aligned_cols=155  Identities=25%  Similarity=0.196  Sum_probs=114.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccc-------------------cccceeEEEEEEcCEEEEEEecCCCCCCHHhHH
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTV-------------------PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWR   79 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (193)
                      +|+++|.+|+|||||+|++++.......                   .+.......+......+.+||+||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            4899999999999999999987665321                   222333444556678999999999999989899


Q ss_pred             hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcC-------
Q 029446           80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDL-------  148 (193)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~-------  148 (193)
                      .+++.+|++++|+|++++..... ..++.....    .+.|+++|+||+|+..+...    +++.+.+.....       
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG  155 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence            99999999999999987654332 233333322    57899999999999874332    223333332111       


Q ss_pred             --CCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          149 --KNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       149 --~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                        +....+++++||+++.|+++++++|.+.+.
T Consensus       156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence              235678999999999999999999998763

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=2.4e-24  Score=146.11  Aligned_cols=141  Identities=22%  Similarity=0.265  Sum_probs=102.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-cc--ccccceeEEEEEEcCEEEEEEecCCCCC------CHHhHHhhh--cCCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-ST--VPTIGFNVEKVQYKNVIFTVWDVGGQEK------LRPLWRHYF--NNTD   86 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~------~~~~~~~~~--~~~d   86 (193)
                      ++|+++|.||+|||||+|+|++.... .+  +.|+......+...+..+.++|+||.-.      .......++  +..|
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D   80 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD   80 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence            47999999999999999999998854 22  4566666677888899999999999322      233334444  5899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446           87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVCEGLGLFDLKNRKWHIQGTCALK  162 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (193)
                      +++.|+|+++.+.   -.....++..    .++|+++|+||+|+....    +.+.+.+.++.        |++++||++
T Consensus        81 ~ii~VvDa~~l~r---~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~  145 (156)
T PF02421_consen   81 LIIVVVDATNLER---NLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSART  145 (156)
T ss_dssp             EEEEEEEGGGHHH---HHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTT
T ss_pred             EEEEECCCCCHHH---HHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCC
Confidence            9999999987543   3334444443    479999999999987642    34666776654        899999999


Q ss_pred             CCCHHHHHHHH
Q 029446          163 GDGLYEGLDWL  173 (193)
Q Consensus       163 ~~gi~~~~~~l  173 (193)
                      ++|++++.+.|
T Consensus       146 ~~g~~~L~~~I  156 (156)
T PF02421_consen  146 GEGIDELKDAI  156 (156)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHhhC
Confidence            99999998875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=5.6e-24  Score=161.95  Aligned_cols=156  Identities=22%  Similarity=0.182  Sum_probs=114.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcC-EEEEEEecCCCCCC-------HHhHHhhhcCCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKN-VIFTVWDVGGQEKL-------RPLWRHYFNNTD   86 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~-------~~~~~~~~~~~d   86 (193)
                      ..|+++|.+|||||||++++++....  .+ .+|...+...+.+.. .++.+||+||..+.       ...+...++.++
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad  237 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR  237 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence            58999999999999999999987543  23 356667777777765 89999999996421       222233346799


Q ss_pred             EEEEEEECCCh---hhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446           87 GLIYVVDSLDR---ERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALK  162 (193)
Q Consensus        87 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (193)
                      ++++|+|+++.   .+++....|..++.... ...++|+++|+||+|+.+....+++.+.+.    +..+.+++++||++
T Consensus       238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi~iSAkt  313 (329)
T TIGR02729       238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVFPISALT  313 (329)
T ss_pred             EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEEEEEccC
Confidence            99999999976   67777777766664432 235789999999999976543333333332    12235799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029446          163 GDGLYEGLDWLASTL  177 (193)
Q Consensus       163 ~~gi~~~~~~l~~~~  177 (193)
                      ++|+++++++|.+.+
T Consensus       314 g~GI~eL~~~I~~~l  328 (329)
T TIGR02729       314 GEGLDELLYALAELL  328 (329)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.92  E-value=1.4e-23  Score=144.30  Aligned_cols=143  Identities=19%  Similarity=0.133  Sum_probs=106.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCCHHh--------HHhhhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFNNT   85 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~   85 (193)
                      ++|+++|++|+|||||++++.+......    ..+.......+.....++.+|||||...+...        ....+.++
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   81 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA   81 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence            5899999999999999999998775321    12222333455556789999999997655321        23456789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      |++++|+|++++.+......+..       ..+.|+++|+||+|+.+....          .......+++++||+++.|
T Consensus        82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~  144 (157)
T cd04164          82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG  144 (157)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence            99999999998776666543322       257899999999998875332          1234456899999999999


Q ss_pred             HHHHHHHHHHHH
Q 029446          166 LYEGLDWLASTL  177 (193)
Q Consensus       166 i~~~~~~l~~~~  177 (193)
                      +++++++|.+.+
T Consensus       145 v~~l~~~l~~~~  156 (157)
T cd04164         145 LDELKEALLELA  156 (157)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998765

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=5.6e-24  Score=158.77  Aligned_cols=152  Identities=21%  Similarity=0.197  Sum_probs=103.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeE-EEEEEcCEEEEEEecCCCCCCH--------HhHHhhhcCCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNV-EKVQYKNVIFTVWDVGGQEKLR--------PLWRHYFNNTD   86 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~-~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~~d   86 (193)
                      +|+++|.+|||||||+|+|.+......   ..|+.... ........++.+|||||.....        .....+++++|
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD   81 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD   81 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence            689999999999999999999876432   22332222 2233456789999999965421        12345678999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      ++++|+|+++..+.+   .++...+..   .+.|+++|+||+|+.+.....+....+...  .. ..+++++||++|.|+
T Consensus        82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~--~~-~~~v~~iSA~~g~gi  152 (270)
T TIGR00436        82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL--ED-FKDIVPISALTGDNT  152 (270)
T ss_pred             EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh--cC-CCceEEEecCCCCCH
Confidence            999999999876654   223333332   468999999999997542222222211110  01 126999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 029446          167 YEGLDWLASTLKE  179 (193)
Q Consensus       167 ~~~~~~l~~~~~~  179 (193)
                      ++++++|.+.+.+
T Consensus       153 ~~L~~~l~~~l~~  165 (270)
T TIGR00436       153 SFLAAFIEVHLPE  165 (270)
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999988754

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.92  E-value=1.5e-24  Score=166.13  Aligned_cols=164  Identities=23%  Similarity=0.236  Sum_probs=121.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCC---------HHhHHhhhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKL---------RPLWRHYFNN   84 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~   84 (193)
                      ..|+++|.||+|||||+|+|++....-.    +.|.+-.|....+.+..+.+.||+|-+..         +......+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            6799999999999999999999886532    35556667888888899999999995532         3344567788


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCC
Q 029446           85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGD  164 (193)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (193)
                      +|+++||+|....  +......+.+++..   .++|+|+|+||+|-........-...+++.       .++++||.+|.
T Consensus        84 ADvilfvVD~~~G--it~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~  151 (444)
T COG1160          84 ADVILFVVDGREG--ITPADEEIAKILRR---SKKPVILVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGR  151 (444)
T ss_pred             CCEEEEEEeCCCC--CCHHHHHHHHHHHh---cCCCEEEEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhcc
Confidence            9999999999643  33444445555543   579999999999977442222222333332       58999999999


Q ss_pred             CHHHHHHHHHHHHH-hhh----c---------cCCCCCCcCCC
Q 029446          165 GLYEGLDWLASTLK-EMR----A---------AGYSSVGTSSF  193 (193)
Q Consensus       165 gi~~~~~~l~~~~~-~~~----~---------~~~~~~~~~~~  193 (193)
                      |+.++.+++.+.+. ...    .         -|.|++||||+
T Consensus       152 Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsL  194 (444)
T COG1160         152 GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSL  194 (444)
T ss_pred             CHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHH
Confidence            99999999999972 111    1         17899999985

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.92  E-value=3.8e-24  Score=150.00  Aligned_cols=152  Identities=18%  Similarity=0.132  Sum_probs=108.5

Q ss_pred             EEcCCCCCHHHHHHHHhcCCc--ccc-ccccceeEEEEEEc-CEEEEEEecCCCCC----CHH---hHHhhhcCCCEEEE
Q 029446           22 MLGLDAAGKTTILYKLHIGEV--LST-VPTIGFNVEKVQYK-NVIFTVWDVGGQEK----LRP---LWRHYFNNTDGLIY   90 (193)
Q Consensus        22 v~G~~~~GKssli~~l~~~~~--~~~-~~t~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~---~~~~~~~~~d~~i~   90 (193)
                      ++|++|||||||+|++.+...  ..+ .+|.......+... ...+.+|||||...    .+.   .....++++|++++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~   80 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH   80 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence            589999999999999998864  222 34555555566666 88999999999632    111   22345678999999


Q ss_pred             EEECCCh------hhHHHHHHHHHHHHcCCC------CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEe
Q 029446           91 VVDSLDR------ERIGKAKQEFQAIIKDPF------MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT  158 (193)
Q Consensus        91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (193)
                      |+|+++.      .+++....+...+.....      ..+.|+++|+||+|+.......+..   ..........+++++
T Consensus        81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~  157 (176)
T cd01881          81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI  157 (176)
T ss_pred             EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence            9999987      467777666666654322      1478999999999997653333321   111122344579999


Q ss_pred             ccccCCCHHHHHHHHHHH
Q 029446          159 CALKGDGLYEGLDWLAST  176 (193)
Q Consensus       159 Sa~~~~gi~~~~~~l~~~  176 (193)
                      ||+++.|++++++++.+.
T Consensus       158 Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         158 SAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             ehhhhcCHHHHHHHHHhh
Confidence            999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.92  E-value=5.1e-24  Score=168.87  Aligned_cols=163  Identities=22%  Similarity=0.247  Sum_probs=116.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCC--------CCHHhHHhhhcCCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQE--------KLRPLWRHYFNNTD   86 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~~d   86 (193)
                      +|+++|.+|+|||||+|+|.+......    +.|....+..+.+.+..+.+|||||..        .+......+++.+|
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad   80 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD   80 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence            589999999999999999998774322    233344556677788899999999963        34455667788999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      ++++|+|+.+..+...  ..+..+++.   .++|+++|+||+|+.+..........++.       .+++++||++|.|+
T Consensus        81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg~-------~~~~~vSa~~g~gv  148 (429)
T TIGR03594        81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGF-------GEPIPISAEHGRGI  148 (429)
T ss_pred             EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcCC-------CCeEEEeCCcCCCh
Confidence            9999999986533222  223333332   46899999999998765322111122221       15899999999999


Q ss_pred             HHHHHHHHHHHHhhhc-------------cCCCCCCcCCC
Q 029446          167 YEGLDWLASTLKEMRA-------------AGYSSVGTSSF  193 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~~-------------~~~~~~~~~~~  193 (193)
                      +++++++.+.+.+...             -|.+++|||+|
T Consensus       149 ~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsL  188 (429)
T TIGR03594       149 GDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTL  188 (429)
T ss_pred             HHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHH
Confidence            9999999998854321             17788888864

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PTZ00099 rab6; Provisional

Probab=99.92  E-value=3.8e-24  Score=149.83  Aligned_cols=132  Identities=22%  Similarity=0.306  Sum_probs=105.6

Q ss_pred             ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCC
Q 029446           44 STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS  119 (193)
Q Consensus        44 ~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  119 (193)
                      .+.||++.++..  +..  ..+.+.+|||||++++...+..+++++|++|+|||++++.+|+.+..|+..+.... ..+.
T Consensus         8 ~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~   86 (176)
T PTZ00099          8 NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDV   86 (176)
T ss_pred             CCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            467899877753  232  46899999999999999999999999999999999999999999999998887643 3578


Q ss_pred             eEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          120 VILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       120 p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      |+|+|+||+|+....  ..++... +    .+..+..+++|||++|+||+++|++|.+.+.+..
T Consensus        87 piilVgNK~DL~~~~~v~~~e~~~-~----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         87 IIALVGNKTDLGDLRKVTYEEGMQ-K----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             eEEEEEECcccccccCCCHHHHHH-H----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            999999999996532  2222211 1    2233457999999999999999999999997644

>cd01889 SelB_euk SelB subfamily

Probab=99.91  E-value=1.2e-23  Score=149.75  Aligned_cols=156  Identities=20%  Similarity=0.087  Sum_probs=104.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC----Ccc------ccccccceeEEEEEEc--------------CEEEEEEecCCCCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG----EVL------STVPTIGFNVEKVQYK--------------NVIFTVWDVGGQEK   73 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~----~~~------~~~~t~~~~~~~~~~~--------------~~~~~i~D~~g~~~   73 (193)
                      ++|+++|++++|||||+++|+..    .+.      ....|.+.....+.+.              ...+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            47999999999999999999973    111      1134555554444433              67999999999876


Q ss_pred             CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCC--c
Q 029446           74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLF--D  147 (193)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~--~  147 (193)
                      +........+.+|++++|+|+++....+....+.  +...   .+.|+++|+||+|+......    +++.+.+...  .
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~  155 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK  155 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            5444445556789999999998754333322221  1121   25799999999998754322    2222221110  0


Q ss_pred             CCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          148 LKNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      ....+++++++||++++|++++++++.+++.
T Consensus       156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            1224568999999999999999999998775

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01894 EngA1 EngA1 subfamily

Probab=99.91  E-value=2.2e-23  Score=143.42  Aligned_cols=145  Identities=19%  Similarity=0.189  Sum_probs=102.2

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCcc---cc-ccccceeEEEEEEcCEEEEEEecCCCCCCHH--------hHHhhhcCCCEE
Q 029446           21 VMLGLDAAGKTTILYKLHIGEVL---ST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP--------LWRHYFNNTDGL   88 (193)
Q Consensus        21 ~v~G~~~~GKssli~~l~~~~~~---~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d~~   88 (193)
                      +++|.+|+|||||++++++....   .. ..|...........+..+.+|||||...+..        .+...++++|++
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i   80 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI   80 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence            47899999999999999987532   11 2233344455666778999999999888654        334567889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      ++|+|+.+..+....  ++...++.   .+.|+++|+||+|+.+.....+....++.       .+++++|++++.|+++
T Consensus        81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv~~  148 (157)
T cd01894          81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLGF-------GEPIPISAEHGRGIGD  148 (157)
T ss_pred             EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcCC-------CCeEEEecccCCCHHH
Confidence            999999765443332  23333332   35899999999999875332112111111       1589999999999999


Q ss_pred             HHHHHHHHH
Q 029446          169 GLDWLASTL  177 (193)
Q Consensus       169 ~~~~l~~~~  177 (193)
                      +++++.+++
T Consensus       149 l~~~l~~~~  157 (157)
T cd01894         149 LLDAILELL  157 (157)
T ss_pred             HHHHHHhhC
Confidence            999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.91  E-value=1.2e-23  Score=174.96  Aligned_cols=169  Identities=20%  Similarity=0.216  Sum_probs=116.3

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeE----EEEEEcCEEEEEEecCCCCC--------CHHhHHh
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV----EKVQYKNVIFTVWDVGGQEK--------LRPLWRH   80 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~g~~~--------~~~~~~~   80 (193)
                      ......+|+++|.+|+|||||+|+|++.......++.|++.    ....+.+..+.+|||||...        +......
T Consensus       271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~  350 (712)
T PRK09518        271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI  350 (712)
T ss_pred             ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence            44455789999999999999999999876543333344433    23445678999999999663        2344456


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      +++.+|++++|+|+++..  ......+...+..   .+.|+|+|+||+|+.....  ...+...+    ..+ ..+++||
T Consensus       351 ~~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~l----g~~-~~~~iSA  418 (712)
T PRK09518        351 AVSLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKL----GLG-EPYPISA  418 (712)
T ss_pred             HHHhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHc----CCC-CeEEEEC
Confidence            778999999999997632  2333333333332   5789999999999865321  11111111    111 3578999


Q ss_pred             ccCCCHHHHHHHHHHHHHhhh--c-------------cCCCCCCcCCC
Q 029446          161 LKGDGLYEGLDWLASTLKEMR--A-------------AGYSSVGTSSF  193 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~~--~-------------~~~~~~~~~~~  193 (193)
                      ++|.|+++++++|.+.+.+..  .             -|.+++|||||
T Consensus       419 ~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSL  466 (712)
T PRK09518        419 MHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSL  466 (712)
T ss_pred             CCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHH
Confidence            999999999999999885421  1             27888888874

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=8.1e-24  Score=167.95  Aligned_cols=163  Identities=22%  Similarity=0.230  Sum_probs=113.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCC--------CHHhHHhhhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEK--------LRPLWRHYFNNT   85 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~~   85 (193)
                      ++|+++|.+|+|||||+|+|.+......    ..|....+..+.+.+..+.+|||||...        +......++.++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a   81 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA   81 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            5899999999999999999998774321    2233445556677789999999999887        333455677899


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce-EEEEeccccCC
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKGD  164 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (193)
                      |++++|+|+.++.+...  .++..++..   .+.|+|+|+||+|+.+..  ....+...      .++ .++++||++|.
T Consensus        82 d~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~------lg~~~~~~iSa~~g~  148 (435)
T PRK00093         82 DVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYS------LGLGEPYPISAEHGR  148 (435)
T ss_pred             CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHh------cCCCCCEEEEeeCCC
Confidence            99999999987533222  222233332   378999999999975521  11211111      122 37899999999


Q ss_pred             CHHHHHHHHHHHHHhhh------------ccCCCCCCcCCC
Q 029446          165 GLYEGLDWLASTLKEMR------------AAGYSSVGTSSF  193 (193)
Q Consensus       165 gi~~~~~~l~~~~~~~~------------~~~~~~~~~~~~  193 (193)
                      |++++++.+.+......            --|.+++|||+|
T Consensus       149 gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStl  189 (435)
T PRK00093        149 GIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSL  189 (435)
T ss_pred             CHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHH
Confidence            99999999988332211            128899999874

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=2e-23  Score=148.79  Aligned_cols=145  Identities=19%  Similarity=0.215  Sum_probs=100.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc--CCcccc-------------cccccee----EEEEEEcCEEEEEEecCCCCCCHHhHH
Q 029446           19 RVVMLGLDAAGKTTILYKLHI--GEVLST-------------VPTIGFN----VEKVQYKNVIFTVWDVGGQEKLRPLWR   79 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~--~~~~~~-------------~~t~~~~----~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (193)
                      +|+++|++++|||||+++|+.  +.+...             ..+.+.+    ...+.++...+.+|||||+++|...+.
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~   83 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE   83 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence            799999999999999999997  444321             1122322    334566789999999999999999999


Q ss_pred             hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhC-C-CcCCCCceE
Q 029446           80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLG-L-FDLKNRKWH  154 (193)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~-~-~~~~~~~~~  154 (193)
                      .+++++|++++|+|+++.. +.....++.....    .+.|+++|+||+|+......   +++.+.+. . ......+++
T Consensus        84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            9999999999999998642 2222333333322    46899999999999754221   22222221 0 011345678


Q ss_pred             EEEeccccCCCHHH
Q 029446          155 IQGTCALKGDGLYE  168 (193)
Q Consensus       155 ~~~~Sa~~~~gi~~  168 (193)
                      ++++||++|.|+.+
T Consensus       159 iv~~Sa~~g~~~~~  172 (194)
T cd01891         159 VLYASAKNGWASLN  172 (194)
T ss_pred             EEEeehhccccccc
Confidence            99999999987643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=1.7e-23  Score=144.27  Aligned_cols=145  Identities=21%  Similarity=0.168  Sum_probs=102.9

Q ss_pred             EEcCCCCCHHHHHHHHhcCCcc-cc--ccccceeEEEEEEcCEEEEEEecCCCCCCHH------hHHhhhc--CCCEEEE
Q 029446           22 MLGLDAAGKTTILYKLHIGEVL-ST--VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP------LWRHYFN--NTDGLIY   90 (193)
Q Consensus        22 v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~d~~i~   90 (193)
                      ++|.+|+|||||++++.+.... ..  ..|.......+.+.+..+.+|||||+..+..      .+..++.  ++|++++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~   80 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN   80 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence            5899999999999999987633 22  2344455556667778999999999876653      3455554  8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      |+|++++....   .++..+..    .++|+++|+||+|+.+........+.+    .+..+.+++++||+++.|+++++
T Consensus        81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~iSa~~~~~~~~l~  149 (158)
T cd01879          81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKL----SELLGVPVVPTSARKGEGIDELK  149 (158)
T ss_pred             EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHH----HHhhCCCeEEEEccCCCCHHHHH
Confidence            99998765432   33333332    368999999999997653222111111    12234579999999999999999


Q ss_pred             HHHHHHH
Q 029446          171 DWLASTL  177 (193)
Q Consensus       171 ~~l~~~~  177 (193)
                      +++.+.+
T Consensus       150 ~~l~~~~  156 (158)
T cd01879         150 DAIAELA  156 (158)
T ss_pred             HHHHHHh
Confidence            9998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=1.1e-23  Score=143.44  Aligned_cols=148  Identities=30%  Similarity=0.382  Sum_probs=114.4

Q ss_pred             EEcCCCCCHHHHHHHHhcCCc-c-ccccccceeEEEEEEc----CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446           22 MLGLDAAGKTTILYKLHIGEV-L-STVPTIGFNVEKVQYK----NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        22 v~G~~~~GKssli~~l~~~~~-~-~~~~t~~~~~~~~~~~----~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (193)
                      ++|++|+|||||++++.+... . ...+|. .........    ...+.+||+||+..+.......++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998877 3 333444 555544443    788999999999988888888889999999999999


Q ss_pred             ChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHH--hhhCCCcCCCCceEEEEeccccCCCHHHHHHHH
Q 029446           96 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVC--EGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  173 (193)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  173 (193)
                      ++.++.....++..........+.|+++++||+|+..........  ...    ......+++++|++++.|+++++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~~i~~~~~~l  155 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQL----AKELGVPYFETSAKTGENVEELFEEL  155 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHH----HhhcCCcEEEEecCCCCChHHHHHHH
Confidence            999888888774444444445789999999999988764433321  111    12345689999999999999999988


Q ss_pred             H
Q 029446          174 A  174 (193)
Q Consensus       174 ~  174 (193)
                      .
T Consensus       156 ~  156 (157)
T cd00882         156 A  156 (157)
T ss_pred             h
Confidence            5

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.91  E-value=2.2e-23  Score=151.29  Aligned_cols=166  Identities=27%  Similarity=0.312  Sum_probs=122.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEEEEE--c--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKVQY--K--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~--~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ..+||+++|++|+|||||+++|.++.+.. +.+|.+..+.....  .  .+.+.+|||+|+++++..+..++.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            34999999999999999999999999884 55666655443222  2  5779999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHH-Hhh----------hCCCcC-CCCceEEEEe
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV-CEG----------LGLFDL-KNRKWHIQGT  158 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~----------~~~~~~-~~~~~~~~~~  158 (193)
                      |+|.+...++.+....|...+......+.|+++|+||+|+......... ...          ...... ......++++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            9999985555555554444444333257999999999999886432111 110          000000 1123348999


Q ss_pred             ccc--cCCCHHHHHHHHHHHHHhhh
Q 029446          159 CAL--KGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       159 Sa~--~~~gi~~~~~~l~~~~~~~~  181 (193)
                      |++  ++.++++++..+...+.+..
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhh
Confidence            999  99999999999999886544

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.91  E-value=7e-23  Score=161.40  Aligned_cols=151  Identities=15%  Similarity=0.173  Sum_probs=111.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--ccceeEEEEEEcCEEEEEEecCCCCCCHHh--------HHhhh
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--STVP--TIGFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYF   82 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~   82 (193)
                      ...++|+++|.+|+|||||+|+|++....  ...+  |.......+.+++..+.+|||||..++...        ...++
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~  280 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI  280 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence            45689999999999999999999987542  2222  233334456678889999999998655432        24567


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446           83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALK  162 (193)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (193)
                      +++|++++|+|++++.+++..  |+.....    .+.|+|+|+||+|+... +..++.        +..+.+++.+||++
T Consensus       281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~--------~~~~~~~~~vSak~  345 (442)
T TIGR00450       281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFV--------SSKVLNSSNLSAKQ  345 (442)
T ss_pred             hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhh--------hhcCCceEEEEEec
Confidence            899999999999988877664  5554422    46899999999998654 222222        22334689999997


Q ss_pred             CCCHHHHHHHHHHHHHhhh
Q 029446          163 GDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       163 ~~gi~~~~~~l~~~~~~~~  181 (193)
                       .|++++++.+.+.+.+..
T Consensus       346 -~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       346 -LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             -CCHHHHHHHHHHHHHHHh
Confidence             699999999999887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.91  E-value=4.9e-23  Score=163.28  Aligned_cols=160  Identities=16%  Similarity=0.112  Sum_probs=111.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc---c-ccccceeEEEEEEcCEEEEEEecCCCCCCHHh-----------HHh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS---T-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL-----------WRH   80 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~---~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~~   80 (193)
                      ..++|+++|.+|+|||||+|++++.....   . ..|.......+..++..+.+|||||..+....           ...
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~  250 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK  250 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence            45899999999999999999999876432   1 22333333445566779999999996543321           134


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcCCCCceEEEEec
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-GAMTPMEVCEGLGLFDLKNRKWHIQGTC  159 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (193)
                      +++.+|++++|+|++++.+.+.. .++..+..    .+.|+|+|+||+|+. +....+++.+.+.........++++++|
T Consensus       251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S  325 (429)
T TIGR03594       251 AIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS  325 (429)
T ss_pred             HHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence            67899999999999987665554 23333322    468999999999998 2222233333332211122346899999


Q ss_pred             cccCCCHHHHHHHHHHHHHhh
Q 029446          160 ALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       160 a~~~~gi~~~~~~l~~~~~~~  180 (193)
                      |++|.|++++++++.+.....
T Consensus       326 A~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       326 ALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             CCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999998876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=3.2e-23  Score=163.65  Aligned_cols=160  Identities=25%  Similarity=0.229  Sum_probs=114.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcCEEEEEEecCCCCC----CHHh---HHhhhcCCC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKNVIFTVWDVGGQEK----LRPL---WRHYFNNTD   86 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~d   86 (193)
                      ...|+++|.||||||||+|+|++....  .+ .+|...+...+.....++++||+||...    ...+   ....+++|+
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad  238 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA  238 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence            358999999999999999999987543  33 4677788888888889999999999432    1111   223457899


Q ss_pred             EEEEEEECCCh----hhHHHHHHHHHHHHcCC----------CCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCcCCCC
Q 029446           87 GLIYVVDSLDR----ERIGKAKQEFQAIIKDP----------FMLNSVILVFANKQDMKGAMTPME-VCEGLGLFDLKNR  151 (193)
Q Consensus        87 ~~i~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~  151 (193)
                      ++++|+|+++.    +.++.+..+..++....          ....+|.|+|+||+|+.+.....+ +...+     ...
T Consensus       239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~  313 (500)
T PRK12296        239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EAR  313 (500)
T ss_pred             EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHc
Confidence            99999999752    34444444443433221          235789999999999975432222 22222     223


Q ss_pred             ceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          152 KWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       152 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      +++++++||++++|+++++++|.+.+...+
T Consensus       314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        314 GWPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            568999999999999999999999987654

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.91  E-value=5.3e-23  Score=162.85  Aligned_cols=146  Identities=17%  Similarity=0.211  Sum_probs=110.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc--cc--ccccceeEEEEEEcCEEEEEEecCCCCCCHHh--------HHhhhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--ST--VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFN   83 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   83 (193)
                      ..++|+++|.+|+|||||+|+|++....  ..  ..|.+.....+..++..+.+|||||..++...        ...+++
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~  293 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIE  293 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH
Confidence            4589999999999999999999987642  22  23444445566778889999999997654321        234678


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      ++|++++|+|++++.+++.... +..      ..+.|+++|+||+|+.+.....           .....+++++||++|
T Consensus       294 ~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAktg  355 (449)
T PRK05291        294 EADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKTG  355 (449)
T ss_pred             hCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeCC
Confidence            8999999999998877665433 222      2578999999999997643221           122346899999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 029446          164 DGLYEGLDWLASTLKE  179 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~  179 (193)
                      +|+++++++|.+.+..
T Consensus       356 ~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        356 EGIDELREAIKELAFG  371 (449)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999998864

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.91  E-value=7.6e-23  Score=146.56  Aligned_cols=157  Identities=27%  Similarity=0.357  Sum_probs=115.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCC-CEEEEEEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNT-DGLIYVVD   93 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~d   93 (193)
                      +|+++|+++||||||+++|..+.+..+.++...+...+..    ....+.+||+||+.+++..+..+++++ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            6899999999999999999998876554444444444333    367899999999999999999999998 99999999


Q ss_pred             CCCh-hhHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-------------CC-----------
Q 029446           94 SLDR-ERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAMTPMEVCEGLG-------------LF-----------  146 (193)
Q Consensus        94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------------~~-----------  146 (193)
                      +.+. .++.....++..++...  ...+.|+++++||+|+........+.+.+.             +.           
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~  161 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES  161 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence            9987 67777777776665421  225799999999999876433222111110             00           


Q ss_pred             ---------cC--CCCceEEEEeccccCC-CHHHHHHHHHH
Q 029446          147 ---------DL--KNRKWHIQGTCALKGD-GLYEGLDWLAS  175 (193)
Q Consensus       147 ---------~~--~~~~~~~~~~Sa~~~~-gi~~~~~~l~~  175 (193)
                               .+  -...+.+.++|++.+. |++.+.+||.+
T Consensus       162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence                     00  1235679999999876 69999888864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK11058 GTPase HflX; Provisional

Probab=99.91  E-value=1.5e-22  Score=158.69  Aligned_cols=154  Identities=18%  Similarity=0.165  Sum_probs=107.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc---ccccccceeEEEEEEcCE-EEEEEecCCCCCC--HHhH------HhhhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL---STVPTIGFNVEKVQYKNV-IFTVWDVGGQEKL--RPLW------RHYFNNT   85 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~-~~~i~D~~g~~~~--~~~~------~~~~~~~   85 (193)
                      ++|+++|.+|||||||+|+|++....   ....|.+.....+...+. .+.+|||+|..+.  ...+      ...++++
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A  277 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA  277 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence            68999999999999999999987653   224566666666666543 8899999997432  1112      2335789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceE-EEEeccccCC
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWH-IQGTCALKGD  164 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~  164 (193)
                      |++++|+|++++.+++.+..+. .++......+.|+|+|+||+|+.+.... .....       ..+.+ ++.+||++|+
T Consensus       278 DlIL~VvDaS~~~~~e~l~~v~-~iL~el~~~~~pvIiV~NKiDL~~~~~~-~~~~~-------~~~~~~~v~ISAktG~  348 (426)
T PRK11058        278 TLLLHVVDAADVRVQENIEAVN-TVLEEIDAHEIPTLLVMNKIDMLDDFEP-RIDRD-------EENKPIRVWLSAQTGA  348 (426)
T ss_pred             CEEEEEEeCCCccHHHHHHHHH-HHHHHhccCCCCEEEEEEcccCCCchhH-HHHHH-------hcCCCceEEEeCCCCC
Confidence            9999999999987766654322 2222222247899999999998753211 11111       01123 5889999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q 029446          165 GLYEGLDWLASTLKEM  180 (193)
Q Consensus       165 gi~~~~~~l~~~~~~~  180 (193)
                      |+++++++|.+.+...
T Consensus       349 GIdeL~e~I~~~l~~~  364 (426)
T PRK11058        349 GIPLLFQALTERLSGE  364 (426)
T ss_pred             CHHHHHHHHHHHhhhc
Confidence            9999999999988543

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=2.3e-22  Score=156.91  Aligned_cols=155  Identities=25%  Similarity=0.207  Sum_probs=112.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEc-CEEEEEEecCCCCC----CHHhHH---hhhcCCCE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYK-NVIFTVWDVGGQEK----LRPLWR---HYFNNTDG   87 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~~~~---~~~~~~d~   87 (193)
                      .|+++|.||||||||++++++....  .+ .+|...+...+.+. ..++.+||+||..+    ...+..   ..++.+++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l  239 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV  239 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence            8999999999999999999987643  22 45667777777776 78999999999532    222222   33456999


Q ss_pred             EEEEEECCCh---hhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEecccc
Q 029446           88 LIYVVDSLDR---ERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALK  162 (193)
Q Consensus        88 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (193)
                      +++|+|+++.   .+++....|..++.... ...++|.++|+||+|+..... .+++.+.+.        .+++++||++
T Consensus       240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~t  311 (424)
T PRK12297        240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALT  311 (424)
T ss_pred             EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCC
Confidence            9999999754   56677666666654432 235789999999999853311 122222222        4799999999


Q ss_pred             CCCHHHHHHHHHHHHHhhh
Q 029446          163 GDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       163 ~~gi~~~~~~l~~~~~~~~  181 (193)
                      ++|+++++++|.+.+.+..
T Consensus       312 geGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        312 GQGLDELLYAVAELLEETP  330 (424)
T ss_pred             CCCHHHHHHHHHHHHHhCc
Confidence            9999999999999886543

>cd01895 EngA2 EngA2 subfamily

Probab=99.90  E-value=4e-22  Score=139.14  Aligned_cols=155  Identities=17%  Similarity=0.122  Sum_probs=104.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc---c-ccccceeEEEEEEcCEEEEEEecCCCCCCH-----------HhHHhh
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLS---T-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLR-----------PLWRHY   81 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~---~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-----------~~~~~~   81 (193)
                      .++|+++|.+|+|||||+|++.+.....   . ..+.......+...+..+.+||+||.....           ......
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~   81 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA   81 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence            5789999999999999999999876432   1 122222233455567789999999964431           112335


Q ss_pred             hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEec
Q 029446           82 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTC  159 (193)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (193)
                      +.++|++++|+|++++.+.... .++.....    .+.|+++++||+|+.+.  ...+++.+.+..........+++++|
T Consensus        82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  156 (174)
T cd01895          82 IERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS  156 (174)
T ss_pred             HhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence            6789999999999988765443 23333222    46899999999998765  23333333222111111235799999


Q ss_pred             cccCCCHHHHHHHHHHH
Q 029446          160 ALKGDGLYEGLDWLAST  176 (193)
Q Consensus       160 a~~~~gi~~~~~~l~~~  176 (193)
                      |++++|++++++.+.+.
T Consensus       157 a~~~~~i~~~~~~l~~~  173 (174)
T cd01895         157 ALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ccCCCCHHHHHHHHHHh
Confidence            99999999999988753

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.90  E-value=8e-23  Score=145.87  Aligned_cols=163  Identities=18%  Similarity=0.145  Sum_probs=106.5

Q ss_pred             hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc-cccccccceeEEEEEE-cCEEEEEEecCCCC----------CCHHhH
Q 029446           11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIGFNVEKVQY-KNVIFTVWDVGGQE----------KLRPLW   78 (193)
Q Consensus        11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~----------~~~~~~   78 (193)
                      ....+..++|+++|++|+|||||++++++..+ ..+.++.+.+...... ...++.+|||||..          .+....
T Consensus        18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            34556779999999999999999999998763 3444555443321111 24789999999943          233344


Q ss_pred             HhhhcC---CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEE
Q 029446           79 RHYFNN---TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHI  155 (193)
Q Consensus        79 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  155 (193)
                      ..++..   ++++++++|.+++.+...  .++...+..   .+.|+++++||+|+.+....++....... .+.....++
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~-~l~~~~~~~  171 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRK-ALKFGDDEV  171 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHH-HHHhcCCce
Confidence            445554   467888999876543322  222233332   46889999999998765333322221111 011224579


Q ss_pred             EEeccccCCCHHHHHHHHHHHHHh
Q 029446          156 QGTCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       156 ~~~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                      +++||++++|++++++.|.+.+.+
T Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        172 ILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhcC
Confidence            999999999999999999887753

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=2e-22  Score=138.99  Aligned_cols=145  Identities=22%  Similarity=0.162  Sum_probs=97.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCC----CHHhHHhhhcCCCEEEEEEEC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK----LRPLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~   94 (193)
                      +|+++|.+|+|||||+|++.+..... .++.++     .+...  .+|||||...    +.......++++|++++|+|+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~-~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~   74 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA-RKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA   74 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC-ccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence            79999999999999999988654221 122222     22111  2799999632    222223346899999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446           95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  174 (193)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  174 (193)
                      ++..++..  .|+..+     ..+.|+++++||+|+.+. ..+++.+....   .....|++++||++++|++++++.+.
T Consensus        75 ~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~---~~~~~p~~~~Sa~~g~gi~~l~~~l~  143 (158)
T PRK15467         75 NDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLE---TGFEEPIFELNSHDPQSVQQLVDYLA  143 (158)
T ss_pred             CCcccccC--HHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHH---cCCCCCEEEEECCCccCHHHHHHHHH
Confidence            98766422  344433     136789999999998653 33333322211   11124899999999999999999999


Q ss_pred             HHHHhhhc
Q 029446          175 STLKEMRA  182 (193)
Q Consensus       175 ~~~~~~~~  182 (193)
                      +.+.+...
T Consensus       144 ~~~~~~~~  151 (158)
T PRK15467        144 SLTKQEEA  151 (158)
T ss_pred             Hhchhhhc
Confidence            88865543

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.89  E-value=1.2e-22  Score=145.57  Aligned_cols=158  Identities=15%  Similarity=0.074  Sum_probs=100.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc---c-c--cccccceeEEEEEEc---------------------------C----
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEV---L-S--TVPTIGFNVEKVQYK---------------------------N----   60 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~---~-~--~~~t~~~~~~~~~~~---------------------------~----   60 (193)
                      .+|+++|+.|+|||||+..+.+-..   . +  ...+....+....+.                           .    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4789999999999999999975421   1 1  111222221111110                           2    


Q ss_pred             --EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH
Q 029446           61 --VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME  138 (193)
Q Consensus        61 --~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  138 (193)
                        ..+.+|||||++.+...+...+.++|++++|+|++++.........+..+...   ...|+|+|+||+|+.+.....+
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~  157 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE  157 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence              68999999999998888888888999999999998632111111122222111   2357899999999976422222


Q ss_pred             HHhhhCC--CcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          139 VCEGLGL--FDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       139 ~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      ..+.+..  ......+++++++||++|+|+++++++|.+.+.
T Consensus       158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            1111110  001123567999999999999999999987664

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.89  E-value=6.2e-23  Score=135.10  Aligned_cols=109  Identities=31%  Similarity=0.454  Sum_probs=81.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc---cccc----ccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL---STVP----TIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~---~~~~----t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      ||+|+|++|+|||||+++|.+....   .+.+    +.......+......+.+||++|++.+...+..++.++|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876   1122    22222233333445699999999998888777778999999999


Q ss_pred             EECCChhhHHHHHHH---HHHHHcCCCCCCCeEEEEEeCCC
Q 029446           92 VDSLDRERIGKAKQE---FQAIIKDPFMLNSVILVFANKQD  129 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~p~ivv~nK~D  129 (193)
                      ||++++.+++++..+   +..+...  ..+.|+|+|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            999999999997544   4444432  25699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.89  E-value=1.2e-21  Score=158.76  Aligned_cols=157  Identities=23%  Similarity=0.194  Sum_probs=110.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeEEEEEEcCE-EEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNVEKVQYKNV-IFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ..+..+|+++|++++|||||++++.+..+...   ..|.......+.+.+. .+.+|||||++.|...+...+..+|+++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            45778999999999999999999998776532   1233333344555333 8999999999999999988889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--CC--CCceEEEEeccccCCC
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD--LK--NRKWHIQGTCALKGDG  165 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sa~~~~g  165 (193)
                      +|+|+++...-+.. ..+...    ...+.|+|+++||+|+... ..+++...+....  ..  ....+++++||++|+|
T Consensus       164 LVVda~dgv~~qT~-e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG  237 (587)
T TIGR00487       164 LVVAADDGVMPQTI-EAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG  237 (587)
T ss_pred             EEEECCCCCCHhHH-HHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence            99999864322221 112222    1247899999999998653 2333333321110  01  1235799999999999


Q ss_pred             HHHHHHHHHHH
Q 029446          166 LYEGLDWLAST  176 (193)
Q Consensus       166 i~~~~~~l~~~  176 (193)
                      +++++++|...
T Consensus       238 I~eLl~~I~~~  248 (587)
T TIGR00487       238 IDELLDMILLQ  248 (587)
T ss_pred             hHHHHHhhhhh
Confidence            99999998753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04163 Era Era subfamily

Probab=99.89  E-value=1.2e-21  Score=135.67  Aligned_cols=153  Identities=19%  Similarity=0.161  Sum_probs=103.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccc---cccc-eeEEEEEEcCEEEEEEecCCCCCCHH--------hHHhhhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTV---PTIG-FNVEKVQYKNVIFTVWDVGGQEKLRP--------LWRHYFN   83 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~---~t~~-~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   83 (193)
                      ...+|+++|.+|+|||||+|++.+.......   .+.. ............+.+|||||......        .....+.
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999987654221   1111 11222334568899999999765433        2234567


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446           84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG-AMTPMEVCEGLGLFDLKNRKWHIQGTCALK  162 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (193)
                      .+|++++|+|++++.  .....++...+..   .+.|+++|+||+|+.. .....+....+..   .....+++++|+++
T Consensus        82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~  153 (168)
T cd04163          82 DVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFPISALK  153 (168)
T ss_pred             hCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEEEEecc
Confidence            899999999998762  2222333333332   2588999999999884 3333333333321   12234799999999


Q ss_pred             CCCHHHHHHHHHHH
Q 029446          163 GDGLYEGLDWLAST  176 (193)
Q Consensus       163 ~~gi~~~~~~l~~~  176 (193)
                      +.|++++++.|.+.
T Consensus       154 ~~~~~~l~~~l~~~  167 (168)
T cd04163         154 GENVDELLEEIVKY  167 (168)
T ss_pred             CCChHHHHHHHHhh
Confidence            99999999999765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd00880 Era_like Era (E

Probab=99.89  E-value=1.1e-21  Score=134.86  Aligned_cols=150  Identities=22%  Similarity=0.146  Sum_probs=106.6

Q ss_pred             EEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEc-CEEEEEEecCCCCCCHH-------hHHhhhcCCCEEE
Q 029446           22 MLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYK-NVIFTVWDVGGQEKLRP-------LWRHYFNNTDGLI   89 (193)
Q Consensus        22 v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~i   89 (193)
                      ++|++|+|||||++++.+......    ..+........... ...+.+||+||......       ....++..+|+++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il   80 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL   80 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence            589999999999999998765521    22222333333333 67899999999766542       3445778999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|+|+.+........ +.....    ..+.|+++|+||+|+.......+..+............+++++||+++.|++++
T Consensus        81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            999999887666654 233322    257899999999999876544443221222223455678999999999999999


Q ss_pred             HHHHHHH
Q 029446          170 LDWLAST  176 (193)
Q Consensus       170 ~~~l~~~  176 (193)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.89  E-value=2.4e-22  Score=142.55  Aligned_cols=157  Identities=24%  Similarity=0.216  Sum_probs=113.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccccccceeEEEEE--EcCEEEEEEecCCCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL---------------------STVPTIGFNVEKVQ--YKNVIFTVWDVGGQE   72 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~---------------------~~~~t~~~~~~~~~--~~~~~~~i~D~~g~~   72 (193)
                      +..+|+++|+.++|||||+++|......                     ....|.......+.  .....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4578999999999999999999853311                     11345556666777  788999999999999


Q ss_pred             CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhh-CCCc
Q 029446           73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME----VCEGL-GLFD  147 (193)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~-~~~~  147 (193)
                      .|.......+..+|++++|+|+.+...-+. ...+..+..    .+.|+|+|+||+|+... ...+    +...+ ....
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~----~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE----LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH----TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHTT
T ss_pred             ceeecccceecccccceeeeeccccccccc-ccccccccc----cccceEEeeeeccchhh-hHHHHHHHHHHHhccccc
Confidence            999988888999999999999986533222 222333322    57889999999999832 2222    22122 1111


Q ss_pred             CCC-CceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          148 LKN-RKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       148 ~~~-~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      ... ..++++++||.+|.|++++++.|.+.++
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            122 4679999999999999999999998874

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.89  E-value=2.2e-22  Score=141.69  Aligned_cols=149  Identities=16%  Similarity=0.160  Sum_probs=97.2

Q ss_pred             hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc-cccccccceeEE--EEEEcCEEEEEEecCCCC----------CCHH
Q 029446           10 DVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIGFNVE--KVQYKNVIFTVWDVGGQE----------KLRP   76 (193)
Q Consensus        10 ~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~--~~~~~~~~~~i~D~~g~~----------~~~~   76 (193)
                      ...+..+.++|+++|.+|+|||||+|++++..+ ..+.++.+.+..  .+..+ -.+.+|||||..          .+..
T Consensus        11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHH
Confidence            345668889999999999999999999998763 333344443322  12222 379999999943          2333


Q ss_pred             hHHhhhc---CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcCC
Q 029446           77 LWRHYFN---NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLK  149 (193)
Q Consensus        77 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~  149 (193)
                      ....+++   .++++++|+|++++.+..+. ..+. .+..   .+.|+++++||+|+.+..+.    +++.+.+...   
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~-~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---  161 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLE-WLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---  161 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---
Confidence            3344544   36899999999875444443 2222 3332   46899999999998764322    2333333321   


Q ss_pred             CCceEEEEeccccCCCHH
Q 029446          150 NRKWHIQGTCALKGDGLY  167 (193)
Q Consensus       150 ~~~~~~~~~Sa~~~~gi~  167 (193)
                      ....+++++||++|+|++
T Consensus       162 ~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       162 ADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             cCCCceEEEECCCCCCCC
Confidence            223479999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00089 era GTPase Era; Reviewed

Probab=99.89  E-value=8.8e-22  Score=148.71  Aligned_cols=156  Identities=23%  Similarity=0.243  Sum_probs=106.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccc---cccceeEEE-EEEcCEEEEEEecCCCCCCH--------HhHHhhhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTV---PTIGFNVEK-VQYKNVIFTVWDVGGQEKLR--------PLWRHYFN   83 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~---~t~~~~~~~-~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~   83 (193)
                      +.-.|+++|.+|||||||+|++++.......   .|+...... ......++.+|||||.....        ......+.
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            4567999999999999999999998765322   222222222 23355899999999965432        22344568


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446           84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALK  162 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (193)
                      ++|++++|+|+++.  +.....++...+..   .+.|+++|+||+|+... ....+..+.+..   .....+++++||++
T Consensus        84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~iSA~~  155 (292)
T PRK00089         84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPISALK  155 (292)
T ss_pred             cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEecCCC
Confidence            89999999999873  22233333343332   46899999999999842 222233333321   11234799999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 029446          163 GDGLYEGLDWLASTLKE  179 (193)
Q Consensus       163 ~~gi~~~~~~l~~~~~~  179 (193)
                      +.|+++++++|.+.+.+
T Consensus       156 ~~gv~~L~~~L~~~l~~  172 (292)
T PRK00089        156 GDNVDELLDVIAKYLPE  172 (292)
T ss_pred             CCCHHHHHHHHHHhCCC
Confidence            99999999999998854

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.88  E-value=1.4e-21  Score=159.04  Aligned_cols=152  Identities=17%  Similarity=0.201  Sum_probs=110.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC-------cc-cccc------ccceeEE----EEEE-----cCEEEEEEecCCCCCCH
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE-------VL-STVP------TIGFNVE----KVQY-----KNVIFTVWDVGGQEKLR   75 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~-------~~-~~~~------t~~~~~~----~~~~-----~~~~~~i~D~~g~~~~~   75 (193)
                      +|+++|+.++|||||+++|....       +. .+..      +.|+++.    .+.+     ..+.+.+|||||+.+|.
T Consensus         5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~   84 (595)
T TIGR01393         5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   84 (595)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence            79999999999999999998642       11 1111      2233332    2333     23789999999999999


Q ss_pred             HhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcCCCCc
Q 029446           76 PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRK  152 (193)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~  152 (193)
                      ..+..+++.+|++++|+|+++..+.+....|+... .    .+.|+|+|+||+|+......   +++.+.++..     .
T Consensus        85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~-----~  154 (595)
T TIGR01393        85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD-----A  154 (595)
T ss_pred             HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC-----c
Confidence            99999999999999999999876666655554332 2    36789999999998754221   2333333321     1


Q ss_pred             eEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446          153 WHIQGTCALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       153 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  180 (193)
                      ..++++||++|.|+++++++|.+.+..-
T Consensus       155 ~~vi~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       155 SEAILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             ceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence            2589999999999999999999887543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.88  E-value=1.8e-21  Score=162.11  Aligned_cols=159  Identities=14%  Similarity=0.058  Sum_probs=111.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc--c-c-ccccceeEEEEEEcCEEEEEEecCCCCC----------CHHh-HHh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--S-T-VPTIGFNVEKVQYKNVIFTVWDVGGQEK----------LRPL-WRH   80 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~-~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~~~   80 (193)
                      ..++|+++|.+|+|||||+|++.+....  . + +.|.+.....+.+++..+.+|||||..+          +... ...
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~  528 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA  528 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence            4589999999999999999999998742  2 2 2333333345566777899999999532          2111 134


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      +++.+|++++|+|+++..+.+... ++..+..    .++|+|+|+||+|+.+....+.+.+.+..........+++.+||
T Consensus       529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA  603 (712)
T PRK09518        529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA  603 (712)
T ss_pred             HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence            468899999999999887776653 3444432    46899999999999865333333332221111122346899999


Q ss_pred             ccCCCHHHHHHHHHHHHHh
Q 029446          161 LKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~  179 (193)
                      ++|.|++++++.+.+.+..
T Consensus       604 ktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        604 KTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999888765

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=2.4e-21  Score=153.85  Aligned_cols=160  Identities=15%  Similarity=0.116  Sum_probs=110.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccccc----ccceeEEEEEEcCEEEEEEecCCCCCCHH-----------hHH
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVP----TIGFNVEKVQYKNVIFTVWDVGGQEKLRP-----------LWR   79 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~   79 (193)
                      ...++|+++|.+|+|||||+|++++.......+    |.......+...+..+.+|||||......           ...
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            356999999999999999999999876432222    22222234455778899999999543211           123


Q ss_pred             hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEec
Q 029446           80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC  159 (193)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (193)
                      .+++.+|++++|+|++++.+.+.. ..+..+..    .+.|+|+|+||+|+.+.....++.+.+.........++++++|
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S  325 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDL-RIAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS  325 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence            467889999999999987665543 22333322    4689999999999985433334443333221223456899999


Q ss_pred             cccCCCHHHHHHHHHHHHHh
Q 029446          160 ALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       160 a~~~~gi~~~~~~l~~~~~~  179 (193)
                      |+++.|++++++.+.+....
T Consensus       326 A~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        326 ALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999998876653

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.88  E-value=3.2e-21  Score=130.90  Aligned_cols=157  Identities=24%  Similarity=0.286  Sum_probs=128.8

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc---------cc----ccccceeEEEEEEcC-EEEEEEecCCCCCCHHhH
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL---------ST----VPTIGFNVEKVQYKN-VIFTVWDVGGQEKLRPLW   78 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~---------~~----~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~   78 (193)
                      .+....||+|.|+.++||||+++.++.....         ..    ..|+.+++......+ ..+.+++||||++|+..|
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence            3457789999999999999999999987631         11    256677777777755 899999999999999999


Q ss_pred             HhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEe
Q 029446           79 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT  158 (193)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (193)
                      ..++++++++++++|.+++..+ .....+..+...   ..+|++|++||.|+.+...++++.+.+....   ..+++++.
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~---~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~  158 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR---NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEI  158 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc---cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeee
Confidence            9999999999999999999988 433434443332   1299999999999999989999988887643   56789999


Q ss_pred             ccccCCCHHHHHHHHHHH
Q 029446          159 CALKGDGLYEGLDWLAST  176 (193)
Q Consensus       159 Sa~~~~gi~~~~~~l~~~  176 (193)
                      +|.++++..+.++.+..+
T Consensus       159 ~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         159 DATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ecccchhHHHHHHHHHhh
Confidence            999999999988887765

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=2.3e-21  Score=150.44  Aligned_cols=160  Identities=19%  Similarity=0.129  Sum_probs=113.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcC-EEEEEEecCCCCCC-------HHhHHhhhcCCCE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKN-VIFTVWDVGGQEKL-------RPLWRHYFNNTDG   87 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~-------~~~~~~~~~~~d~   87 (193)
                      .|+++|.||||||||+|++++....  .+ .+|.......+.... .++.++|+||..+-       .......++.+++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv  240 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV  240 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence            7999999999999999999986543  22 356667777777754 56999999995431       1122335688999


Q ss_pred             EEEEEECC---ChhhHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           88 LIYVVDSL---DRERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        88 ~i~v~d~~---~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      +++|+|++   +...++....++.++... ....++|.|+|+||+|+.......+..+.+...  .....+++++||+++
T Consensus       241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAASG  318 (390)
T ss_pred             EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCCC
Confidence            99999998   455666666666665542 123468999999999987653332222222110  011225899999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q 029446          164 DGLYEGLDWLASTLKEM  180 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~~  180 (193)
                      .|++++++.|.+.+.+.
T Consensus       319 ~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        319 LGVKELCWDLMTFIEEN  335 (390)
T ss_pred             cCHHHHHHHHHHHhhhC
Confidence            99999999999988654

>COG1159 Era GTPase [General function prediction only]

Probab=99.88  E-value=5.6e-22  Score=144.68  Aligned_cols=158  Identities=22%  Similarity=0.190  Sum_probs=111.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccccc---ccceeE-EEEEEcCEEEEEEecCCCCC--------CHHhHHhhh
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVP---TIGFNV-EKVQYKNVIFTVWDVGGQEK--------LRPLWRHYF   82 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~---t~~~~~-~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~   82 (193)
                      .+.--|+++|.||+|||||+|++.+...+...+   |+.-.+ ..+..+..++.+.||||--+        +.......+
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            345578999999999999999999998774433   222222 34455789999999999222        223345566


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccc
Q 029446           83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      ..+|+++||+|+++...  .-..++.+.++.   .+.|+|+++||+|..+... .....+.+...   .....++++||+
T Consensus        84 ~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~---~~f~~ivpiSA~  155 (298)
T COG1159          84 KDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL---LPFKEIVPISAL  155 (298)
T ss_pred             ccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh---CCcceEEEeecc
Confidence            78999999999987433  233444444433   4679999999999888755 23333333221   112279999999


Q ss_pred             cCCCHHHHHHHHHHHHHhh
Q 029446          162 KGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~~  180 (193)
                      +|.|++.+.+.+..++.+-
T Consensus       156 ~g~n~~~L~~~i~~~Lpeg  174 (298)
T COG1159         156 KGDNVDTLLEIIKEYLPEG  174 (298)
T ss_pred             ccCCHHHHHHHHHHhCCCC
Confidence            9999999999999988653

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.88  E-value=4.2e-21  Score=159.16  Aligned_cols=154  Identities=22%  Similarity=0.178  Sum_probs=111.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ..+...|+++|+.++|||||+++|.+..+...   ..|.......+.+.+..+.+|||||++.|...+...+..+|++++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            45889999999999999999999988766521   123333334556667899999999999999999988899999999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--cCC--CCceEEEEeccccC
Q 029446           91 VVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF--DLK--NRKWHIQGTCALKG  163 (193)
Q Consensus        91 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~Sa~~~  163 (193)
                      |+|+++.   ++.+.    +...    ...+.|+|+++||+|+... ..+++...+...  ...  ...++++++||++|
T Consensus       367 VVdAddGv~~qT~e~----i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG  437 (787)
T PRK05306        367 VVAADDGVMPQTIEA----INHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG  437 (787)
T ss_pred             EEECCCCCCHhHHHH----HHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence            9999874   33222    2222    1257899999999999654 223333222110  011  12368999999999


Q ss_pred             CCHHHHHHHHHHH
Q 029446          164 DGLYEGLDWLAST  176 (193)
Q Consensus       164 ~gi~~~~~~l~~~  176 (193)
                      +|+++++++|...
T Consensus       438 ~GI~eLle~I~~~  450 (787)
T PRK05306        438 EGIDELLEAILLQ  450 (787)
T ss_pred             CCchHHHHhhhhh
Confidence            9999999998754

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.88  E-value=1.2e-22  Score=133.71  Aligned_cols=167  Identities=15%  Similarity=0.181  Sum_probs=132.6

Q ss_pred             hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE----EEEcCEEEEEEecCCCCCCHHhHHhhhcCC
Q 029446           11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNT   85 (193)
Q Consensus        11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (193)
                      ...+...+||.++|++..|||||+-.+.++... ++..+.|++...    +....+.+.|||.+|++++....+....++
T Consensus        14 a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~ds   93 (205)
T KOG1673|consen   14 AVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDS   93 (205)
T ss_pred             ccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCc
Confidence            345557799999999999999999999998885 566788887653    333578999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      -+++++||+++++++..+..|+.+....+.  ..-.|+|++|.|+.-...  .++.....+...++-.+.+.|.||+.++
T Consensus        94 vaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk--tAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~s  171 (205)
T KOG1673|consen   94 VAILFMFDLTRRSTLNSIKEWYRQARGLNK--TAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHS  171 (205)
T ss_pred             EEEEEEEecCchHHHHHHHHHHHHHhccCC--ccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccc
Confidence            999999999999999999999999987643  333468999999754322  2222222233334556668999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 029446          164 DGLYEGLDWLASTLKE  179 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~  179 (193)
                      .|++.+|..+..++..
T Consensus       172 INv~KIFK~vlAklFn  187 (205)
T KOG1673|consen  172 INVQKIFKIVLAKLFN  187 (205)
T ss_pred             ccHHHHHHHHHHHHhC
Confidence            9999999998887754

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.87  E-value=1.2e-21  Score=159.35  Aligned_cols=154  Identities=21%  Similarity=0.119  Sum_probs=110.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC---cc-cc--ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE---VL-ST--VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~---~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      +.|+++|++++|||||+++|++..   ++ ++  ..|....+..+...+..+.+||+||++.|.......+.++|++++|
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV   80 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV   80 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence            478999999999999999999743   22 22  2344444555666778999999999999999888888999999999


Q ss_pred             EECCC---hhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHhH----HHhhhCCCcCCCCceEEEEeccccC
Q 029446           92 VDSLD---RERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTPME----VCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        92 ~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      +|+++   +++.+.+.     ++..   .++| +|+|+||+|+.+....+.    +.+.+.... ...+++++++||++|
T Consensus        81 VDa~~G~~~qT~ehl~-----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~-~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        81 VDADEGVMTQTGEHLA-----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI-FLKNAKIFKTSAKTG  151 (581)
T ss_pred             EECCCCCcHHHHHHHH-----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC-CCCCCcEEEEeCCCC
Confidence            99987   34433331     2222   3566 999999999986532222    111111000 011568999999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q 029446          164 DGLYEGLDWLASTLKEM  180 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~~  180 (193)
                      +|++++++.+.+.+...
T Consensus       152 ~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       152 QGIGELKKELKNLLESL  168 (581)
T ss_pred             CCchhHHHHHHHHHHhC
Confidence            99999999998877544

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.87  E-value=7.2e-21  Score=156.57  Aligned_cols=158  Identities=21%  Similarity=0.189  Sum_probs=111.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTD   86 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (193)
                      ..+..+|+++|+.++|||||+++|.+..+...   ..|.......  +..  ....+.+|||||++.|...+..++..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            45778999999999999999999998766532   1232222222  222  3589999999999999999998999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc--CC--CCceEEEEecccc
Q 029446           87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD--LK--NRKWHIQGTCALK  162 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sa~~  162 (193)
                      ++++|+|+++....+... .+..+ .   ..+.|+|+++||+|+... ...++...+....  ..  ...++++++||++
T Consensus       321 iaILVVDA~dGv~~QT~E-~I~~~-k---~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt  394 (742)
T CHL00189        321 IAILIIAADDGVKPQTIE-AINYI-Q---AANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQ  394 (742)
T ss_pred             EEEEEEECcCCCChhhHH-HHHHH-H---hcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence            999999998743222221 12222 1   257899999999998764 2333333322110  11  1236899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029446          163 GDGLYEGLDWLASTL  177 (193)
Q Consensus       163 ~~gi~~~~~~l~~~~  177 (193)
                      |+|+++++++|....
T Consensus       395 G~GIdeLle~I~~l~  409 (742)
T CHL00189        395 GTNIDKLLETILLLA  409 (742)
T ss_pred             CCCHHHHHHhhhhhh
Confidence            999999999998764

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.87  E-value=1.5e-20  Score=137.16  Aligned_cols=149  Identities=22%  Similarity=0.191  Sum_probs=103.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcCEEEEEEecCCCCCCH-------HhHHhhhcCCCEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLR-------PLWRHYFNNTDGL   88 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d~~   88 (193)
                      +|+++|.+|+|||||++++.+....  .+ .+|.......+.+.+..+++||+||..+..       .....+++++|++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i   81 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI   81 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence            6899999999999999999987643  22 345556666777888999999999975332       2334577899999


Q ss_pred             EEEEECCChh-hHHHHHHHHH----------------------------------------HHHcCC-------------
Q 029446           89 IYVVDSLDRE-RIGKAKQEFQ----------------------------------------AIIKDP-------------  114 (193)
Q Consensus        89 i~v~d~~~~~-s~~~~~~~~~----------------------------------------~~~~~~-------------  114 (193)
                      ++|+|++++. ..+.+...+.                                        .++++.             
T Consensus        82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~  161 (233)
T cd01896          82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI  161 (233)
T ss_pred             EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence            9999998754 2222222221                                        111100             


Q ss_pred             -----------CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446          115 -----------FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus       115 -----------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                                 ...-+|+++|+||+|+.+..   +... +.    +.  .+++++||+++.|++++++.+.+.+
T Consensus       162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~---~~~~-~~----~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIE---ELDL-LA----RQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CHHHHHHHHhCCceEeeEEEEEECccCCCHH---HHHH-Hh----cC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       01236899999999987542   2221 11    11  2489999999999999999999876

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.86  E-value=6.5e-21  Score=150.73  Aligned_cols=155  Identities=18%  Similarity=0.162  Sum_probs=104.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------ccccccceeEEEEEEc
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL----------------------------------STVPTIGFNVEKVQYK   59 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~   59 (193)
                      ....++|+++|++++|||||+++|+...-.                                  ....|.......+..+
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            456799999999999999999999832110                                  1234555556667778


Q ss_pred             CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--H-
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--P-  136 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~-  136 (193)
                      ...+.+|||||+++|.......+..+|++++|+|+++..++.....++..+....  ...|+++++||+|+.+...  . 
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence            8999999999999887766666789999999999986322222222222222221  2246899999999976321  1 


Q ss_pred             ---hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446          137 ---MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus       137 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                         +++.+.+.........++++++||++|+|+++..
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence               1222222211122234689999999999998743

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.86  E-value=3e-20  Score=151.41  Aligned_cols=155  Identities=17%  Similarity=0.176  Sum_probs=109.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC--cc---------cc---cccccee----EEEEEE-----cCEEEEEEecCCCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGE--VL---------ST---VPTIGFN----VEKVQY-----KNVIFTVWDVGGQE   72 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~--~~---------~~---~~t~~~~----~~~~~~-----~~~~~~i~D~~g~~   72 (193)
                      +.-+++++|+.++|||||+.+|....  +.         ++   ..+.|++    ...+.+     ..+.+.+|||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            33489999999999999999997521  11         11   1122322    223333     26889999999999


Q ss_pred             CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcCC
Q 029446           73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLK  149 (193)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~  149 (193)
                      +|...+..+++.+|++++|+|+++....+....|... ..    .+.|+|+|+||+|+......   +++.+.++..   
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~-~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~---  157 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA-LE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID---  157 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC---
Confidence            9999999999999999999999886555554443322 22    46889999999998754221   2233323221   


Q ss_pred             CCceEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446          150 NRKWHIQGTCALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       150 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  180 (193)
                        ...++++||++|.|+++++++|.+.+..-
T Consensus       158 --~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        158 --ASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             --cceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence              12489999999999999999999887643

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.86  E-value=3.1e-20  Score=122.07  Aligned_cols=165  Identities=27%  Similarity=0.326  Sum_probs=131.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc---ccccccceeEEE-EEE---cCEEEEEEecCCCCCC-HHhHHhhhcCCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL---STVPTIGFNVEK-VQY---KNVIFTVWDVGGQEKL-RPLWRHYFNNTD   86 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~-~~~---~~~~~~i~D~~g~~~~-~~~~~~~~~~~d   86 (193)
                      .+..||+|+|..++|||+++..+.-+...   +..||..-.|.. +.-   ....+.++||.|-..+ ..+-++|++-+|
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            47789999999999999999999876654   346777655543 222   3568999999997766 566788999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      ++++||+..+++||+.+...-..+-+......+|+++.+||+|+.++   .++....+..|++...+..++++|++...+
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL  163 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMDRPSL  163 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence            99999999999999999876666666666677999999999999765   444444455566677788999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029446          167 YEGLDWLASTLKEMRA  182 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~~  182 (193)
                      -+.|..+...+.+.+.
T Consensus       164 ~epf~~l~~rl~~pqs  179 (198)
T KOG3883|consen  164 YEPFTYLASRLHQPQS  179 (198)
T ss_pred             hhHHHHHHHhccCCcc
Confidence            9999999988865543

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.86  E-value=5.9e-21  Score=150.95  Aligned_cols=153  Identities=18%  Similarity=0.086  Sum_probs=102.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC--Ccc--------------------------------ccccccceeEEEEEEc
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG--EVL--------------------------------STVPTIGFNVEKVQYK   59 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~   59 (193)
                      ....++|+++|+.++|||||+++|+..  ...                                ....|.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            356789999999999999999999752  111                                0122333444556667


Q ss_pred             CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHH--HHHHHcCCCCCCCeEEEEEeCCCCCCCCC--
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQE--FQAIIKDPFMLNSVILVFANKQDMKGAMT--  135 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~--~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--  135 (193)
                      ...+.+||+||+++|.......+..+|++++|+|+++.++. ...++  ...+....  ...|+|+|+||+|+.+...  
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~-~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE-VQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc-cCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHH
Confidence            89999999999999887777778899999999999887432 11111  11222221  2357999999999975322  


Q ss_pred             H----hHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446          136 P----MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus       136 ~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      .    +++.+.+.........++++++||++|+|+++.
T Consensus       161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~  198 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK  198 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence            1    122222211112223468999999999999863

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.85  E-value=1.2e-20  Score=153.63  Aligned_cols=139  Identities=19%  Similarity=0.201  Sum_probs=99.0

Q ss_pred             cCCCCCHHHHHHHHhcCCcc-ccccccc--eeEEEEEEcCEEEEEEecCCCCCCHHh------HHhhh--cCCCEEEEEE
Q 029446           24 GLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQYKNVIFTVWDVGGQEKLRPL------WRHYF--NNTDGLIYVV   92 (193)
Q Consensus        24 G~~~~GKssli~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~v~   92 (193)
                      |++|+|||||+|++.+.... .+.++..  .....+.+++.++.+|||||+.++...      .+.++  +++|++++|+
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv   80 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV   80 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence            89999999999999987653 3333333  333456667788999999998876542      33333  3799999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      |+++.+.   ...+..++.+    .+.|+++|+||+|+.+....    +++.+.        .+++++++||++|+|+++
T Consensus        81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~--------lg~pvv~tSA~tg~Gi~e  145 (591)
T TIGR00437        81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEER--------LGVPVVPTSATEGRGIER  145 (591)
T ss_pred             cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHH--------cCCCEEEEECCCCCCHHH
Confidence            9987543   2333333332    46899999999998654322    222332        345899999999999999


Q ss_pred             HHHHHHHHH
Q 029446          169 GLDWLASTL  177 (193)
Q Consensus       169 ~~~~l~~~~  177 (193)
                      +++.+.+..
T Consensus       146 L~~~i~~~~  154 (591)
T TIGR00437       146 LKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHh
Confidence            999998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.85  E-value=3.3e-20  Score=154.46  Aligned_cols=151  Identities=19%  Similarity=0.159  Sum_probs=105.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-cc--ccccceeEEEEEEcCEEEEEEecCCCCCCHHh----------HHhhh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-ST--VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL----------WRHYF   82 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~~   82 (193)
                      +.++|+++|++|+|||||+|++++.... .+  +.|+......+.+.+..+.+||+||..++...          ...++
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l   81 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence            4579999999999999999999987653 11  23333334455667889999999997765321          22232


Q ss_pred             --cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           83 --NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                        +.+|++++|+|+++.+..   ..++.++.+    .+.|+++|+||+|+.+........+.+.    +..+++++++||
T Consensus        82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA  150 (772)
T PRK09554         82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVS  150 (772)
T ss_pred             hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEe
Confidence              479999999999876543   234444433    4789999999999875432221112111    234558999999


Q ss_pred             ccCCCHHHHHHHHHHHH
Q 029446          161 LKGDGLYEGLDWLASTL  177 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~  177 (193)
                      ++++|++++.+.+.+..
T Consensus       151 ~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        151 TRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             ecCCCHHHHHHHHHHhh
Confidence            99999999999988765

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=6e-21  Score=129.73  Aligned_cols=157  Identities=22%  Similarity=0.317  Sum_probs=134.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      -.++.+++|..|.||||++++...+.+. .+.+|+|+.......    +.+++..|||.|++.+..+...++-+..++++
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            4789999999999999999999999998 467999998876554    35899999999999999999999899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      +||++..-++.++..|..++....  .++|+++++||.|.....     .+.......+..++.+++.||+++.|.+.-|
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPF  161 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPF  161 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccch
Confidence            999999999999999999998754  579999999999976652     2222333346677799999999999999999


Q ss_pred             HHHHHHHHh
Q 029446          171 DWLASTLKE  179 (193)
Q Consensus       171 ~~l~~~~~~  179 (193)
                      -|+.+++..
T Consensus       162 l~LarKl~G  170 (216)
T KOG0096|consen  162 LWLARKLTG  170 (216)
T ss_pred             HHHhhhhcC
Confidence            999988753

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.85  E-value=8.3e-20  Score=133.51  Aligned_cols=155  Identities=25%  Similarity=0.246  Sum_probs=110.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc--------------ccc-------ccccceeEEEEEEcCEEEEEEecCCCCCCHHh
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV--------------LST-------VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL   77 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~--------------~~~-------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (193)
                      +|+++|+.|+|||||+++++...-              .++       ..+.......+.+.+.++.+|||||+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            589999999999999999975311              010       11233445567778999999999999999999


Q ss_pred             HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCC---------
Q 029446           78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM---TPMEVCEGLGL---------  145 (193)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~---------  145 (193)
                      +..+++.+|++++|+|+++.... ....++..+..    .++|+++++||+|+....   ..+++...++.         
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~  155 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG  155 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence            99999999999999999876433 22344444332    478999999999987421   01111111110         


Q ss_pred             -----------------------------------------------CcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          146 -----------------------------------------------FDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       146 -----------------------------------------------~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                                                                     ......-+|++..||.++.|++.+++.|.+.++
T Consensus       156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p  235 (237)
T cd04168         156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP  235 (237)
T ss_pred             EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence                                                           001223478999999999999999999988763

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.85  E-value=6e-20  Score=148.76  Aligned_cols=155  Identities=23%  Similarity=0.180  Sum_probs=106.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----ccccceeEEEEEE----------------cCEEEEEEecCCCCCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST-----VPTIGFNVEKVQY----------------KNVIFTVWDVGGQEKL   74 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~----------------~~~~~~i~D~~g~~~~   74 (193)
                      +..-|+++|++++|||||+|++.+..+...     ..+.+........                ....+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            567899999999999999999998766432     2233333322211                1124889999999999


Q ss_pred             HHhHHhhhcCCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHh
Q 029446           75 RPLWRHYFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--------------TPM  137 (193)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~  137 (193)
                      ...+..+++.+|++++|+|+++   +++++.+.    .+ ..   .+.|+|+++||+|+.+..              ...
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l-~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~  154 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----IL-RM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI  154 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HH-HH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence            9999989999999999999986   44444332    11 21   468999999999987421              001


Q ss_pred             HHH--------------hhhCCCc-------CCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          138 EVC--------------EGLGLFD-------LKNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       138 ~~~--------------~~~~~~~-------~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      .+.              .+.+...       --...++++++||++|+|++++..+|.....
T Consensus       155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence            110              1111110       0123578999999999999999998876443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.84  E-value=3e-20  Score=145.86  Aligned_cols=161  Identities=18%  Similarity=0.108  Sum_probs=104.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc------ccccceeEEEE--------------------EE------cCEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST------VPTIGFNVEKV--------------------QY------KNVI   62 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~------~~t~~~~~~~~--------------------~~------~~~~   62 (193)
                      +..++|+++|++++|||||+++|.+.....+      ..|....+...                    ..      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            4678999999999999999999976422111      11222211110                    00      1467


Q ss_pred             EEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh
Q 029446           63 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEG  142 (193)
Q Consensus        63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  142 (193)
                      +.+||+||+++|...+......+|++++|+|+++..........+..+ ...  ...|+++++||+|+.+.....+..++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence            999999999999988888888999999999998643111111222211 211  23578999999999864322111111


Q ss_pred             hCCC--cCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          143 LGLF--DLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       143 ~~~~--~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      +...  .....+++++++||++|+|+++++++|...+.
T Consensus       159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            1100  00123568999999999999999999998764

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.84  E-value=5.5e-20  Score=149.52  Aligned_cols=157  Identities=17%  Similarity=0.181  Sum_probs=114.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc--CCcccc-----------------ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHH
Q 029446           19 RVVMLGLDAAGKTTILYKLHI--GEVLST-----------------VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWR   79 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~--~~~~~~-----------------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (193)
                      +|+++|+.++|||||+++|+.  +.+...                 ..|+......+.+++..+.+|||||+.+|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            689999999999999999985  222111                 2333344456778899999999999999999999


Q ss_pred             hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcC--CCCceE
Q 029446           80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDL--KNRKWH  154 (193)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~--~~~~~~  154 (193)
                      .+++.+|++++|+|+.+.. ......++..+..    .++|+|+|+||+|+.....   ..++...+.....  ....++
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            9999999999999998642 2333455555543    4688999999999865421   1222222211111  234678


Q ss_pred             EEEeccccCC----------CHHHHHHHHHHHHHhh
Q 029446          155 IQGTCALKGD----------GLYEGLDWLASTLKEM  180 (193)
Q Consensus       155 ~~~~Sa~~~~----------gi~~~~~~l~~~~~~~  180 (193)
                      ++.+||++|.          |++.+++.|.+.+..-
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            9999999996          7999999999888643

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.84  E-value=3.6e-20  Score=133.35  Aligned_cols=147  Identities=18%  Similarity=0.089  Sum_probs=93.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc-c---------------------------------cccccceeEEEEEEcCEEEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL-S---------------------------------TVPTIGFNVEKVQYKNVIFT   64 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~-~---------------------------------~~~t~~~~~~~~~~~~~~~~   64 (193)
                      +|+++|++|+|||||+++|+...-. .                                 ...|.......+.+.+.++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            5899999999999999999753211 0                                 11233333445556788999


Q ss_pred             EEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhh
Q 029446           65 VWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEG  142 (193)
Q Consensus        65 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~  142 (193)
                      +|||||+.++.......++.+|++++|+|++++..-+.  .....+....  ...++|+|+||+|+.+...  ..++...
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~  156 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD  156 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence            99999998887777777899999999999986532111  1112222221  1245788999999875321  1112111


Q ss_pred             hCC--CcCCCCceEEEEeccccCCCHHHH
Q 029446          143 LGL--FDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus       143 ~~~--~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +..  ..+.....+++++||+++.|+++.
T Consensus       157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         157 YLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            110  001112346999999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=7.7e-20  Score=126.82  Aligned_cols=164  Identities=19%  Similarity=0.206  Sum_probs=112.3

Q ss_pred             hhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC-ccccccccceeEEEEEEcC-EEEEEEecCC----------CCCCHH
Q 029446            9 FDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVEKVQYKN-VIFTVWDVGG----------QEKLRP   76 (193)
Q Consensus         9 ~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~-~~~~~~t~~~~~~~~~~~~-~~~~i~D~~g----------~~~~~~   76 (193)
                      ++..+.+...-|+++|.+|+|||||||++++.. ...++.|.|.+...--+.- -.+.++|.||          ++.+..
T Consensus        16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~   95 (200)
T COG0218          16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKK   95 (200)
T ss_pred             HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHH
Confidence            345667788899999999999999999999966 3344555554433222211 1289999999          344555


Q ss_pred             hHHhhhc---CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcCC
Q 029446           77 LWRHYFN---NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLK  149 (193)
Q Consensus        77 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~  149 (193)
                      ....|++   +..++++++|+..+-  ......+.+++..   .++|+++++||+|..+..+.    ..+.+.+..... 
T Consensus        96 ~i~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~-  169 (200)
T COG0218          96 LIEEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP-  169 (200)
T ss_pred             HHHHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC-
Confidence            5566665   368889999996543  3333445555544   58999999999999886444    234444433211 


Q ss_pred             CCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446          150 NRKWHIQGTCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       150 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                       ....++.+|+.++.|++++.+.|.+.+..
T Consensus       170 -~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         170 -DDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             -ccceEEEEecccccCHHHHHHHHHHHhhc
Confidence             11128889999999999999999887753

>PRK10218 GTP-binding protein; Provisional

Probab=99.84  E-value=1.4e-19  Score=146.98  Aligned_cols=160  Identities=18%  Similarity=0.183  Sum_probs=113.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc--CCcccc-------------ccccceeE----EEEEEcCEEEEEEecCCCCCCHH
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI--GEVLST-------------VPTIGFNV----EKVQYKNVIFTVWDVGGQEKLRP   76 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~--~~~~~~-------------~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~   76 (193)
                      .--+|+++|+.++|||||+++|..  +.+...             ..+.++++    ..+.+++..+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            345899999999999999999986  333211             12334333    34566789999999999999999


Q ss_pred             hHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcC--CCC
Q 029446           77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDL--KNR  151 (193)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~--~~~  151 (193)
                      .+..+++.+|++++|+|+.+....+ ....+.....    .++|.|+++||+|+......   +++...+.....  ...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~  158 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL  158 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence            9999999999999999998653222 2233333333    46889999999998764322   233333321111  234


Q ss_pred             ceEEEEeccccCC----------CHHHHHHHHHHHHHhh
Q 029446          152 KWHIQGTCALKGD----------GLYEGLDWLASTLKEM  180 (193)
Q Consensus       152 ~~~~~~~Sa~~~~----------gi~~~~~~l~~~~~~~  180 (193)
                      .+|++.+||++|.          |+..+++.|.+.+..-
T Consensus       159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            6789999999998          5888888888887643

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.83  E-value=1.5e-19  Score=139.17  Aligned_cols=151  Identities=17%  Similarity=0.182  Sum_probs=111.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc----cccccceeEEEEEEcCEEEEEEecCCCCCCHH--------hHHhhhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS----TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP--------LWRHYFN   83 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   83 (193)
                      .-++++++|.||+|||||+|.|.+.....    .++|.++-...++.+++.+.+.||+|--+-..        .....++
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~  295 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIE  295 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence            55899999999999999999999988652    24666677778889999999999999332211        1234457


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      .+|.+++|+|++.+.+-..  ......    ...++|+++|.||.|+......... + .      ..+.+++.+|++++
T Consensus       296 ~ADlvL~v~D~~~~~~~~d--~~~~~~----~~~~~~~i~v~NK~DL~~~~~~~~~-~-~------~~~~~~i~iSa~t~  361 (454)
T COG0486         296 EADLVLFVLDASQPLDKED--LALIEL----LPKKKPIIVVLNKADLVSKIELESE-K-L------ANGDAIISISAKTG  361 (454)
T ss_pred             hCCEEEEEEeCCCCCchhh--HHHHHh----cccCCCEEEEEechhcccccccchh-h-c------cCCCceEEEEecCc
Confidence            8999999999998522111  111111    2257899999999999987553333 1 1      11226899999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q 029446          164 DGLYEGLDWLASTLKEM  180 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~~  180 (193)
                      +|++++.+.|.+.+...
T Consensus       362 ~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         362 EGLDALREAIKQLFGKG  378 (454)
T ss_pred             cCHHHHHHHHHHHHhhc
Confidence            99999999999988665

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.83  E-value=1.1e-19  Score=142.64  Aligned_cols=160  Identities=18%  Similarity=0.077  Sum_probs=103.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc------cccccceeEEEEEE--------------------------cCE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLS------TVPTIGFNVEKVQY--------------------------KNV   61 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~------~~~t~~~~~~~~~~--------------------------~~~   61 (193)
                      +...++|+++|+.++|||||+.+|.+.....      ...|....+....+                          ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            3467999999999999999999996532111      12233222211110                          026


Q ss_pred             EEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh---
Q 029446           62 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM---  137 (193)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---  137 (193)
                      .+.+|||||+++|..........+|++++|+|++++. .-+. ...+..+ ...  ...|+++|+||+|+.+.....   
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHH
Confidence            7999999999988777766667889999999998642 1111 1111111 111  234689999999998653322   


Q ss_pred             -HHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446          138 -EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       138 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                       ++...+..  ....+++++++||++++|++++++.|.+.+..
T Consensus       162 ~~i~~~l~~--~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        162 EQIKEFVKG--TVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHHHhcc--ccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence             12221111  01235689999999999999999999987653

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.83  E-value=3.9e-19  Score=144.52  Aligned_cols=155  Identities=25%  Similarity=0.194  Sum_probs=104.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccc-----cccceeEEEEEE------cC-----E-----EEEEEecCCCCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV-----PTIGFNVEKVQY------KN-----V-----IFTVWDVGGQEK   73 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~~~------~~-----~-----~~~i~D~~g~~~   73 (193)
                      .+++.|+++|++++|||||++++.+.......     .+.|.++.....      ..     .     .+.+|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            46788999999999999999999876543221     233433322211      00     1     278999999999


Q ss_pred             CHHhHHhhhcCCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------H
Q 029446           74 LRPLWRHYFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--------------P  136 (193)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~  136 (193)
                      |...+...+..+|++++|+|+++   +++++.+.    . ...   .+.|+++++||+|+.+...              .
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~-~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~  155 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----I-LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS  155 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----H-HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence            99988888899999999999987   45544432    1 121   4789999999999853100              0


Q ss_pred             h-----------HHHhhhCCCcC----------CCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446          137 M-----------EVCEGLGLFDL----------KNRKWHIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus       137 ~-----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      .           ++...+....+          -...++++++||.+|+|++++++.+...+
T Consensus       156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence            0           01111111100          12457899999999999999999887544

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.83  E-value=2.5e-19  Score=137.64  Aligned_cols=159  Identities=16%  Similarity=0.125  Sum_probs=114.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCC----------CCHH-hHHh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQE----------KLRP-LWRH   80 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~-~~~~   80 (193)
                      ..++|+++|.||+|||||+|++.+.+..-.    +.|.+.-...+.+++..+.+.||+|..          .|.. ....
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~  256 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK  256 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence            459999999999999999999999887643    344444455667789999999999922          2211 1234


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEe
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGT  158 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  158 (193)
                      .+..+|++++|+|++.+-+  +....+..++..   .+.++++|+||.|+.+.  ...++..+.+....-.-...+++.+
T Consensus       257 aI~~a~vvllviDa~~~~~--~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i  331 (444)
T COG1160         257 AIERADVVLLVIDATEGIS--EQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI  331 (444)
T ss_pred             HHhhcCEEEEEEECCCCch--HHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence            5578999999999976543  443444444433   67889999999999886  3334444444432223345589999


Q ss_pred             ccccCCCHHHHHHHHHHHHHh
Q 029446          159 CALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       159 Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                      ||+++.|++++++.+.+....
T Consensus       332 SA~~~~~i~~l~~~i~~~~~~  352 (444)
T COG1160         332 SALTGQGLDKLFEAIKEIYEC  352 (444)
T ss_pred             EecCCCChHHHHHHHHHHHHH
Confidence            999999999999988776543

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.83  E-value=5.5e-20  Score=133.33  Aligned_cols=146  Identities=22%  Similarity=0.201  Sum_probs=95.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC---------------------------ccc-------cccccceeEEEEEEcCEEEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE---------------------------VLS-------TVPTIGFNVEKVQYKNVIFT   64 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~---------------------------~~~-------~~~t~~~~~~~~~~~~~~~~   64 (193)
                      +|+++|+.++|||||+.+|+...                           ..+       ...|.......+.+.+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            58999999999999999995311                           000       12233344455667889999


Q ss_pred             EEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhh---HH---HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----C
Q 029446           65 VWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER---IG---KAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----M  134 (193)
Q Consensus        65 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~  134 (193)
                      +|||||+..+...+...++.+|++++|+|+++...   +.   .....+... ..  ....|+|+++||+|+...    .
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~~  157 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSEE  157 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccHH
Confidence            99999998887777777788999999999987420   11   111112221 21  123689999999999842    1


Q ss_pred             CHhHHHhh----hCCCcCCCCceEEEEeccccCCCHH
Q 029446          135 TPMEVCEG----LGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus       135 ~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      ...++.+.    +.........++++++||++|+|++
T Consensus       158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            12222222    2221123346789999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.82  E-value=1.8e-19  Score=127.99  Aligned_cols=145  Identities=22%  Similarity=0.157  Sum_probs=95.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCc------------c-------ccccccceeEEEEEEcCEEEEEEecCCCCCCHHh
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEV------------L-------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL   77 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (193)
                      .++|+++|+.++|||||+++|+....            .       ....|.......+..++.++.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            47899999999999999999975310            0       0112223333344456789999999999988888


Q ss_pred             HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCcCCCC
Q 029446           78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-M----EVCEGLGLFDLKNR  151 (193)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~  151 (193)
                      ....+..+|++++|+|+.....-+ ....+..+ ..   .+.| +|+++||+|+...... +    ++...+........
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~-~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~  156 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLA-RQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD  156 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHH-HH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence            888889999999999997642211 11222222 22   3455 7899999998743221 1    22222222112234


Q ss_pred             ceEEEEeccccCCCH
Q 029446          152 KWHIQGTCALKGDGL  166 (193)
Q Consensus       152 ~~~~~~~Sa~~~~gi  166 (193)
                      +++++++||.+|.|+
T Consensus       157 ~v~iipiSa~~g~n~  171 (195)
T cd01884         157 NTPIVRGSALKALEG  171 (195)
T ss_pred             CCeEEEeeCccccCC
Confidence            679999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.82  E-value=2.1e-19  Score=131.69  Aligned_cols=152  Identities=24%  Similarity=0.276  Sum_probs=113.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcC-EEEEEEecCCCCC-------CHHhHHhhhcCCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKN-VIFTVWDVGGQEK-------LRPLWRHYFNNTD   86 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~D~~g~~~-------~~~~~~~~~~~~d   86 (193)
                      ..|.++|.||+|||||+|.++.....  +| .+|+..++.++.+++ .++.+-|.||--+       .-...-..++.|+
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            46889999999999999999987654  44 467777777887754 4599999999222       1112223357899


Q ss_pred             EEEEEEECCCh---hhHHHHHHHHHHHHc-CCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcCCCCceEEEEecc
Q 029446           87 GLIYVVDSLDR---ERIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAMTP--MEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        87 ~~i~v~d~~~~---~s~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      .++||+|++..   ..|+.+...+.++-. +....+.|.++|+||+|+.+.+..  .++.+.+...       .++++||
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~pvsA  349 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVPVSA  349 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEEeee
Confidence            99999999987   788888776666644 345678999999999998643222  4455554421       5999999


Q ss_pred             ccCCCHHHHHHHHHHH
Q 029446          161 LKGDGLYEGLDWLAST  176 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~  176 (193)
                      ++++|+.++++.|.+.
T Consensus       350 ~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  350 KSGEGLEELLNGLREL  365 (366)
T ss_pred             ccccchHHHHHHHhhc
Confidence            9999999999887654

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.82  E-value=2.9e-19  Score=124.08  Aligned_cols=153  Identities=20%  Similarity=0.161  Sum_probs=95.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEEcCEEEEEEecCCCCC----------CHHhHHhhhc--
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQYKNVIFTVWDVGGQEK----------LRPLWRHYFN--   83 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~--   83 (193)
                      .|+++|.+|+|||||++.+.+.... ...++.+.+...  +... ..+.+||+||...          +......++.  
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR   79 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence            4799999999999999999954443 344444443322  2222 3899999999543          2333333333  


Q ss_pred             -CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-CCCceEEEEeccc
Q 029446           84 -NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCAL  161 (193)
Q Consensus        84 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~  161 (193)
                       +++++++++|..+..+....  .+...+..   .+.|+++++||+|+.................. .....+++++||+
T Consensus        80 ~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~  154 (170)
T cd01876          80 ENLKGVVLLIDSRHGPTEIDL--EMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL  154 (170)
T ss_pred             hhhhEEEEEEEcCcCCCHhHH--HHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence             46789999999765322211  11222222   25789999999998654332222222211000 1334579999999


Q ss_pred             cCCCHHHHHHHHHHHH
Q 029446          162 KGDGLYEGLDWLASTL  177 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~  177 (193)
                      ++.|+++++++|.+.+
T Consensus       155 ~~~~~~~l~~~l~~~~  170 (170)
T cd01876         155 KGQGIDELRALIEKWL  170 (170)
T ss_pred             CCCCHHHHHHHHHHhC
Confidence            9999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.82  E-value=1.6e-19  Score=147.45  Aligned_cols=154  Identities=19%  Similarity=0.117  Sum_probs=105.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC---cc-c--cccccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE---VL-S--TVPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~---~~-~--~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      +-|+++|+.++|||||+++|++..   .. +  ...|....+..+.. ++..+.+||+||+++|.......+.++|++++
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            358999999999999999998643   22 1  24454444444433 45678999999999998888888899999999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHhHHHhhhCCC--cCCCCceEEEEeccccCC
Q 029446           91 VVDSLDR---ERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTPMEVCEGLGLF--DLKNRKWHIQGTCALKGD  164 (193)
Q Consensus        91 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~  164 (193)
                      |+|+++.   ++.+.+     .++..   .+.| +|+|+||+|+.++...++..+++...  ...-...+++++||++|+
T Consensus        81 VVda~eg~~~qT~ehl-----~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~  152 (614)
T PRK10512         81 VVACDDGVMAQTREHL-----AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR  152 (614)
T ss_pred             EEECCCCCcHHHHHHH-----HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence            9999863   322222     22222   2344 57999999997643322222222110  001123589999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 029446          165 GLYEGLDWLASTLKE  179 (193)
Q Consensus       165 gi~~~~~~l~~~~~~  179 (193)
                      |++++++.|.+....
T Consensus       153 gI~~L~~~L~~~~~~  167 (614)
T PRK10512        153 GIDALREHLLQLPER  167 (614)
T ss_pred             CCHHHHHHHHHhhcc
Confidence            999999999876544

>COG2262 HflX GTPases [General function prediction only]

Probab=99.82  E-value=1.2e-18  Score=132.12  Aligned_cols=162  Identities=19%  Similarity=0.160  Sum_probs=121.3

Q ss_pred             hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc---ccccccceeEEEEEEc-CEEEEEEecCCCC---------CCHH
Q 029446           10 DVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL---STVPTIGFNVEKVQYK-NVIFTVWDVGGQE---------KLRP   76 (193)
Q Consensus        10 ~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~D~~g~~---------~~~~   76 (193)
                      ++.....-+.|.++|..|+|||||+|++++....   ....|.+.+...+... +..+.+-||.|--         .|++
T Consensus       185 ~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFks  264 (411)
T COG2262         185 KKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKS  264 (411)
T ss_pred             hhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHH
Confidence            3455567799999999999999999999987654   2468888888888775 6899999999933         3455


Q ss_pred             hHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEE
Q 029446           77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQ  156 (193)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (193)
                      +.... ..+|+++.|+|++++...+.+ .....++.......+|+|+|.||+|+..............       . ..+
T Consensus       265 TLEE~-~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~-------~-~~v  334 (411)
T COG2262         265 TLEEV-KEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS-------P-NPV  334 (411)
T ss_pred             HHHHh-hcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC-------C-CeE
Confidence            55544 679999999999999544443 4455555554556799999999999877643111111111       1 478


Q ss_pred             EeccccCCCHHHHHHHHHHHHHhhh
Q 029446          157 GTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       157 ~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      .+||++|+|++.+.+.|.+.+....
T Consensus       335 ~iSA~~~~gl~~L~~~i~~~l~~~~  359 (411)
T COG2262         335 FISAKTGEGLDLLRERIIELLSGLR  359 (411)
T ss_pred             EEEeccCcCHHHHHHHHHHHhhhcc
Confidence            8999999999999999999887554

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.82  E-value=4e-19  Score=128.81  Aligned_cols=152  Identities=24%  Similarity=0.215  Sum_probs=99.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc-----------------cccc-------cceeE-----------------EEEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLS-----------------TVPT-------IGFNV-----------------EKVQ   57 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~-----------------~~~t-------~~~~~-----------------~~~~   57 (193)
                      ||+++|+.++|||||+++|..+.+..                 .+.|       .+.+.                 ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            58999999999999999998754421                 0011       11111                 1122


Q ss_pred             EcCEEEEEEecCCCCCCHHhHHhhhc--CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 029446           58 YKNVIFTVWDVGGQEKLRPLWRHYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT  135 (193)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  135 (193)
                      ..+..+.+.|+||+..|.......+.  .+|++++|+|+.....  .....+..+...   .++|+++|+||+|+.+...
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~  155 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA---LNIPVFVVVTKIDLAPANI  155 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence            34678999999999988776665554  6899999999976432  222222222222   4688999999999876533


Q ss_pred             HhH----HHhhhCCC---------------------cCCCCceEEEEeccccCCCHHHHHHHHHH
Q 029446          136 PME----VCEGLGLF---------------------DLKNRKWHIQGTCALKGDGLYEGLDWLAS  175 (193)
Q Consensus       136 ~~~----~~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  175 (193)
                      ..+    +.+.+...                     ......+|+|.+||.+|+|++++.+.|..
T Consensus       156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            322    22233210                     01223458999999999999999887753

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04169 RF3 RF3 subfamily

Probab=99.81  E-value=2.6e-18  Score=127.61  Aligned_cols=110  Identities=20%  Similarity=0.272  Sum_probs=79.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC--ccc----------------c-------ccccceeEEEEEEcCEEEEEEecCCCCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE--VLS----------------T-------VPTIGFNVEKVQYKNVIFTVWDVGGQEK   73 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~--~~~----------------~-------~~t~~~~~~~~~~~~~~~~i~D~~g~~~   73 (193)
                      +|+++|++|+|||||+++|+...  ...                +       ..+.......+.+.+.++.+|||||+.+
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d   83 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED   83 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence            69999999999999999997421  110                0       1122233446777899999999999999


Q ss_pred             CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      |......+++.+|++++|+|+++..... ...++... ..   .++|+++++||+|+...
T Consensus        84 f~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~-~~---~~~P~iivvNK~D~~~a  138 (267)
T cd04169          84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVC-RL---RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHH-Hh---cCCCEEEEEECCccCCC
Confidence            8887777889999999999998653322 22333332 22   47899999999998643

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.5e-19  Score=120.42  Aligned_cols=163  Identities=31%  Similarity=0.532  Sum_probs=136.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (193)
                      .+.-|+++.|-.|+|||||++.|-++......||.-.+...+.+.+..++-+|.+|+..-+..|..++..+|++++.+|+
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda   97 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA   97 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence            46679999999999999999999988877777888788888889999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC------------CCCceEEEEecccc
Q 029446           95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL------------KNRKWHIQGTCALK  162 (193)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~  162 (193)
                      -+.+.|.+....+..++......+.|+++.+||+|.......++....+++...            ..+-+.+|.||...
T Consensus        98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~  177 (193)
T KOG0077|consen   98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR  177 (193)
T ss_pred             hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence            999999999988888887666688999999999999987766666555442211            12334688899998


Q ss_pred             CCCHHHHHHHHHHHH
Q 029446          163 GDGLYEGLDWLASTL  177 (193)
Q Consensus       163 ~~gi~~~~~~l~~~~  177 (193)
                      +.|.-+.|.|+...+
T Consensus       178 ~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  178 KMGYGEGFKWLSQYI  192 (193)
T ss_pred             cCccceeeeehhhhc
Confidence            888777777776543

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.80  E-value=2.2e-18  Score=138.10  Aligned_cols=151  Identities=21%  Similarity=0.226  Sum_probs=114.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-cc--ccccceeEEEEEEcCEEEEEEecCC------CCCCHHhHHhhhc--C
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-ST--VPTIGFNVEKVQYKNVIFTVWDVGG------QEKLRPLWRHYFN--N   84 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~D~~g------~~~~~~~~~~~~~--~   84 (193)
                      +..+|+++|+||+|||||+|++++.... .+  +-|++-....+..++.++.+.|.||      ....+...+.++.  +
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            4567999999999999999999998765 34  3455555667778888899999999      2223444444444  5


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      .|+++-|+|+++.+.--.+   ..++++    -+.|+|++.|++|..+.    .+.+++.+.++.        |+++++|
T Consensus        82 ~D~ivnVvDAtnLeRnLyl---tlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA  146 (653)
T COG0370          82 PDLIVNVVDATNLERNLYL---TLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVA  146 (653)
T ss_pred             CCEEEEEcccchHHHHHHH---HHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEe
Confidence            7999999999986643333   333333    37889999999998764    455667776665        8999999


Q ss_pred             ccCCCHHHHHHHHHHHHHhhh
Q 029446          161 LKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      ++|+|++++...+.+...++.
T Consensus       147 ~~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         147 KRGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             ecCCCHHHHHHHHHHhccccc
Confidence            999999999999988665554

>PRK12735 elongation factor Tu; Reviewed

Probab=99.79  E-value=2.7e-18  Score=134.49  Aligned_cols=166  Identities=22%  Similarity=0.191  Sum_probs=107.2

Q ss_pred             HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC-------Cc-----c-------ccccccceeEEEEEEcCEEEEEE
Q 029446            6 RKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG-------EV-----L-------STVPTIGFNVEKVQYKNVIFTVW   66 (193)
Q Consensus         6 ~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~-------~~-----~-------~~~~t~~~~~~~~~~~~~~~~i~   66 (193)
                      +..|++  ....++|+++|++++|||||+++|++.       .+     .       ....|.......+..+..++.++
T Consensus         3 ~~~~~~--~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~i   80 (396)
T PRK12735          3 KEKFER--TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHV   80 (396)
T ss_pred             hhhcCC--CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEE
Confidence            455663  346799999999999999999999862       10     0       01223333333344467789999


Q ss_pred             ecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCCH-h----HHH
Q 029446           67 DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMKGAMTP-M----EVC  140 (193)
Q Consensus        67 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~-~----~~~  140 (193)
                      ||||+.+|.......+..+|++++|+|+.+...-+. ...+..+ ..   .++|.| +++||+|+.+..+. +    ++.
T Consensus        81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~-~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~  155 (396)
T PRK12735         81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVR  155 (396)
T ss_pred             ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHH-HH---cCCCeEEEEEEecCCcchHHHHHHHHHHHH
Confidence            999999888777777889999999999986432111 1222222 21   356755 68999999753222 1    222


Q ss_pred             hhhCCCcCCCCceEEEEeccccCC----------CHHHHHHHHHHHHH
Q 029446          141 EGLGLFDLKNRKWHIQGTCALKGD----------GLYEGLDWLASTLK  178 (193)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~Sa~~~~----------gi~~~~~~l~~~~~  178 (193)
                      ..+........+++++++||.++.          ++.++++.|.+.+.
T Consensus       156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            222111111235789999999984          67888888877653

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.79  E-value=5.2e-18  Score=126.65  Aligned_cols=109  Identities=18%  Similarity=0.231  Sum_probs=80.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc--c-------------------cccccceeEEEEEEcCEEEEEEecCCCCCCHHh
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL--S-------------------TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL   77 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (193)
                      +|+++|++|+|||||++++....-.  .                   ...+.......+.+.+..+.+|||||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            5899999999999999999742211  0                   022333445566778899999999999888888


Q ss_pred             HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                      +..++..+|++++|+|+++....... ..+.....    .++|.++++||+|+..
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~----~~~p~iivvNK~D~~~  130 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE----AGIPRIIFINKMDRER  130 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCccCC
Confidence            88889999999999999876544332 22333222    4689999999999874

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.79  E-value=1.7e-18  Score=126.46  Aligned_cols=159  Identities=18%  Similarity=0.164  Sum_probs=105.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccc---ccc-ceeEEEEEEcCEEEEEEecCCCCC------------CHHh
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV---PTI-GFNVEKVQYKNVIFTVWDVGGQEK------------LRPL   77 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~---~t~-~~~~~~~~~~~~~~~i~D~~g~~~------------~~~~   77 (193)
                      ..+.+.|+|+|.||+|||||.|.+.+...+...   .|+ --....+.-...++.++||||-..            +...
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~  148 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN  148 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence            467899999999999999999999998876432   222 222344555789999999999111            1112


Q ss_pred             HHhhhcCCCEEEEEEECCChhhHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-----------------HhH
Q 029446           78 WRHYFNNTDGLIYVVDSLDRERIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-----------------PME  138 (193)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------------~~~  138 (193)
                      ....++++|++++++|+++....-  .+...+...      .++|-|+|.||.|......                 ..+
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~  222 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE  222 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence            234567899999999998532211  111222222      5688999999999875310                 112


Q ss_pred             HHhhhCCCc-----CCCCce----EEEEeccccCCCHHHHHHHHHHHHH
Q 029446          139 VCEGLGLFD-----LKNRKW----HIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       139 ~~~~~~~~~-----~~~~~~----~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      +.+.+....     -..+++    .+|.+||.+|+||+++-++|+.+..
T Consensus       223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            222222111     112233    4999999999999999999998774

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.79  E-value=8.5e-18  Score=125.02  Aligned_cols=109  Identities=19%  Similarity=0.213  Sum_probs=80.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc--CCcc-------------------ccccccceeEEEEEEcCEEEEEEecCCCCCCHHh
Q 029446           19 RVVMLGLDAAGKTTILYKLHI--GEVL-------------------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL   77 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (193)
                      +|+++|++++|||||+++|..  +...                   ....|.......+.+.+.++.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999963  1110                   0122333445567778999999999999999888


Q ss_pred             HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                      +..+++.+|++++|+|+.+...-+. ...+.....    .++|+++++||+|+..
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence            9999999999999999976432221 233333322    4689999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK12736 elongation factor Tu; Reviewed

Probab=99.79  E-value=2.5e-18  Score=134.53  Aligned_cols=160  Identities=19%  Similarity=0.172  Sum_probs=105.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCc------------c-------ccccccceeEEEEEEcCEEEEEEecCCCCCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV------------L-------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKL   74 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (193)
                      ....++|+++|+.++|||||+++|++...            .       ....|.......+..+...+.++||||+.+|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            45679999999999999999999986210            0       1122333333334345678999999999988


Q ss_pred             HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHh-----HHHhhhCCCcC
Q 029446           75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTPM-----EVCEGLGLFDL  148 (193)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~-----~~~~~~~~~~~  148 (193)
                      .......+..+|++++|+|+.+...-+. ...+..+ ..   .++| +|+++||+|+.+..+..     ++...+....+
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~-~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~  163 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLA-RQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHH-HH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence            8877777789999999999986422111 1222222 22   3567 67899999987542221     22222221112


Q ss_pred             CCCceEEEEeccccCC--------CHHHHHHHHHHHHH
Q 029446          149 KNRKWHIQGTCALKGD--------GLYEGLDWLASTLK  178 (193)
Q Consensus       149 ~~~~~~~~~~Sa~~~~--------gi~~~~~~l~~~~~  178 (193)
                      ....++++++||++|.        +++++++.+.+.+.
T Consensus       164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            2235689999999983        57788888777664

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=8.7e-18  Score=124.05  Aligned_cols=156  Identities=17%  Similarity=0.146  Sum_probs=115.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcCEEEEEEecCC--------CCCCHHhHHhhhc-
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKNVIFTVWDVGG--------QEKLRPLWRHYFN-   83 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~~-   83 (193)
                      ..+.|+|.|.||+|||||++.+++....  +| .+|-++++..+..+..+++++||||        ...-......+++ 
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h  246 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH  246 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence            4578999999999999999999998765  45 4788899999999999999999999        1112222233333 


Q ss_pred             CCCEEEEEEECCCh--hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446           84 NTDGLIYVVDSLDR--ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        84 ~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      -.++++|+||++..  -+++.+...+.++...   -+.|+++|+||+|..+....++....+..    ..+.....+++.
T Consensus       247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~----~~~~~~~~~~~~  319 (346)
T COG1084         247 LAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLE----EGGEEPLKISAT  319 (346)
T ss_pred             hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHh----hccccccceeee
Confidence            37899999999854  5677787888887654   23899999999999976555555444321    122235668888


Q ss_pred             cCCCHHHHHHHHHHHHH
Q 029446          162 KGDGLYEGLDWLASTLK  178 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~  178 (193)
                      .+.+++.+...+.....
T Consensus       320 ~~~~~d~~~~~v~~~a~  336 (346)
T COG1084         320 KGCGLDKLREEVRKTAL  336 (346)
T ss_pred             ehhhHHHHHHHHHHHhh
Confidence            88888888877777643

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.78  E-value=2.3e-18  Score=122.98  Aligned_cols=159  Identities=13%  Similarity=0.082  Sum_probs=97.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccce---eE--EEEEE-cCEEEEEEecCCCCCCHHh-----HHhhhcC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGF---NV--EKVQY-KNVIFTVWDVGGQEKLRPL-----WRHYFNN   84 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~---~~--~~~~~-~~~~~~i~D~~g~~~~~~~-----~~~~~~~   84 (193)
                      +++|+++|.+|+|||||+|.+.+..... ..++.+.   +.  ..+.. ....+.+||+||.......     ....+.+
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            4789999999999999999999865532 2222221   11  11111 1246899999997543222     2223567


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHH----hhhCCC--cCC
Q 029446           85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVC----EGLGLF--DLK  149 (193)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~----~~~~~~--~~~  149 (193)
                      +|+++++.+.    ++......+.+.+..   .+.|+++|+||+|+.....         .+++.    +.....  ...
T Consensus        81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            8998888542    244444444444443   2578999999999853211         11111    111100  001


Q ss_pred             CCceEEEEeccc--cCCCHHHHHHHHHHHHHhhhc
Q 029446          150 NRKWHIQGTCAL--KGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       150 ~~~~~~~~~Sa~--~~~gi~~~~~~l~~~~~~~~~  182 (193)
                      ....++|.+|+.  .+.|+..+.+.|...+.+.+.
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence            122369999999  678999999999999987654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>CHL00071 tufA elongation factor Tu

Probab=99.78  E-value=4.4e-18  Score=133.78  Aligned_cols=153  Identities=22%  Similarity=0.194  Sum_probs=99.2

Q ss_pred             HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc------------c-------cccccceeEEEEEEcCEEEEEE
Q 029446            6 RKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL------------S-------TVPTIGFNVEKVQYKNVIFTVW   66 (193)
Q Consensus         6 ~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~------------~-------~~~t~~~~~~~~~~~~~~~~i~   66 (193)
                      +++|..  ....++|+++|++++|||||+++|++..-.            +       ...|.......+..+..++.+.
T Consensus         3 ~~~~~~--~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~i   80 (409)
T CHL00071          3 REKFER--KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHV   80 (409)
T ss_pred             hhhccC--CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEE
Confidence            344443  456799999999999999999999864110            0       1112222223344467889999


Q ss_pred             ecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHH
Q 029446           67 DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-M----EVC  140 (193)
Q Consensus        67 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~----~~~  140 (193)
                      ||||+.+|.......+..+|++++|+|+.....  .....+..+...   .++| +|+++||+|+.+.... +    ++.
T Consensus        81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~--~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~  155 (409)
T CHL00071         81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPM--PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVR  155 (409)
T ss_pred             ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHH
Confidence            999999888887778889999999999975422  222222222222   3567 7789999999864321 1    222


Q ss_pred             hhhCCCcCCCCceEEEEeccccCCC
Q 029446          141 EGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      ..+.........++++++||.+|++
T Consensus       156 ~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        156 ELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHHHHhCCCCCcceEEEcchhhccc
Confidence            2222211222357899999999874

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.78  E-value=4.4e-18  Score=133.29  Aligned_cols=152  Identities=21%  Similarity=0.172  Sum_probs=97.3

Q ss_pred             HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC------------cc-------ccccccceeEEEEEEcCEEEEEE
Q 029446            6 RKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE------------VL-------STVPTIGFNVEKVQYKNVIFTVW   66 (193)
Q Consensus         6 ~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~------------~~-------~~~~t~~~~~~~~~~~~~~~~i~   66 (193)
                      +.+|+  .....++|+++|+.++|||||+++|.+..            ..       +...|.......+.....++.+|
T Consensus         3 ~~~~~--~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~li   80 (394)
T TIGR00485         3 KEKFE--RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHV   80 (394)
T ss_pred             hhhhc--CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEE
Confidence            44455  34678999999999999999999997420            00       11234344334444467889999


Q ss_pred             ecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCCHh-----HHH
Q 029446           67 DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMKGAMTPM-----EVC  140 (193)
Q Consensus        67 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~-----~~~  140 (193)
                      ||||+++|..........+|++++|+|+.+...-+. ...+..+..    .++|.+ +++||+|+.+..+..     ++.
T Consensus        81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~  155 (394)
T TIGR00485        81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVR  155 (394)
T ss_pred             ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHH
Confidence            999999998777777788999999999986422221 122222222    356654 789999987642211     222


Q ss_pred             hhhCCCcCCCCceEEEEeccccCC
Q 029446          141 EGLGLFDLKNRKWHIQGTCALKGD  164 (193)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~Sa~~~~  164 (193)
                      ..+.........++++++||.++.
T Consensus       156 ~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       156 ELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHhcCCCccCccEEECcccccc
Confidence            222211112234789999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK13351 elongation factor G; Reviewed

Probab=99.78  E-value=1.1e-17  Score=139.45  Aligned_cols=116  Identities=19%  Similarity=0.135  Sum_probs=90.5

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCc--------------c-------ccccccceeEEEEEEcCEEEEEEecCCC
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEV--------------L-------STVPTIGFNVEKVQYKNVIFTVWDVGGQ   71 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~--------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~   71 (193)
                      ..+...+|+++|+.++|||||+++|+...-              .       ....|+......+.+....+.+|||||+
T Consensus         4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~   83 (687)
T PRK13351          4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH   83 (687)
T ss_pred             ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence            345678999999999999999999974210              0       1234555666678888999999999999


Q ss_pred             CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      .++...+..+++.+|++++|+|+++....+.. ..+..+..    .++|+++++||+|+...
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence            99999999999999999999999887665544 33333322    46899999999998864

>cd04167 Snu114p Snu114p subfamily

Probab=99.77  E-value=4.3e-18  Score=123.04  Aligned_cols=108  Identities=21%  Similarity=0.204  Sum_probs=77.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc------------------ccccceeE----EEEE-----EcCEEEEEEecCCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLST------------------VPTIGFNV----EKVQ-----YKNVIFTVWDVGGQ   71 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~------------------~~t~~~~~----~~~~-----~~~~~~~i~D~~g~   71 (193)
                      +|+++|+.++|||||+++|+.......                  ....+.++    ..+.     .....+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            589999999999999999986432210                  01112221    1222     12478999999999


Q ss_pred             CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      .++......++..+|++++|+|+.+..+... ..++.....    .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            9998888888999999999999987665433 233333322    358999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.76  E-value=2.7e-17  Score=121.21  Aligned_cols=156  Identities=20%  Similarity=0.198  Sum_probs=112.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcCEEEEEEecCCC----CCCH---HhHHhhhcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKNVIFTVWDVGGQ----EKLR---PLWRHYFNN   84 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~----~~~~---~~~~~~~~~   84 (193)
                      .-.-.|+++|.|++|||||++.|++....  +| .+|.......+.+++.++++.|+||-    ...+   .......++
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            34568999999999999999999997654  45 46777777889999999999999972    1111   234456689


Q ss_pred             CCEEEEEEECCChhh-HHHHHH--------------------------------------------HHHHH---------
Q 029446           85 TDGLIYVVDSLDRER-IGKAKQ--------------------------------------------EFQAI---------  110 (193)
Q Consensus        85 ~d~~i~v~d~~~~~s-~~~~~~--------------------------------------------~~~~~---------  110 (193)
                      ||++++|+|+..... .+.+..                                            .+.+.         
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999985322 222222                                            11111         


Q ss_pred             ------------HcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          111 ------------IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       111 ------------~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                                  +..+ ..-+|.++|.||.|+...+....+.+..          ..+.+||+.+.|++++.+.|.+.+-
T Consensus       221 r~dvTlDd~id~l~~n-rvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         221 REDVTLDDLIDALEGN-RVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             ecCCcHHHHHHHHhhc-ceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence                        1100 1146899999999999864454554433          5899999999999999999999885


Q ss_pred             hhh
Q 029446          179 EMR  181 (193)
Q Consensus       179 ~~~  181 (193)
                      --+
T Consensus       290 liR  292 (365)
T COG1163         290 LIR  292 (365)
T ss_pred             eEE
Confidence            444

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.76  E-value=3.4e-17  Score=131.73  Aligned_cols=114  Identities=19%  Similarity=0.304  Sum_probs=82.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc--CCcc----------------cc-------ccccceeEEEEEEcCEEEEEEecC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI--GEVL----------------ST-------VPTIGFNVEKVQYKNVIFTVWDVG   69 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~--~~~~----------------~~-------~~t~~~~~~~~~~~~~~~~i~D~~   69 (193)
                      .+.-+|+|+|++++|||||+++|+.  +...                ++       ..++......+.+++..+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            4567999999999999999999963  1110                00       112223334567788999999999


Q ss_pred             CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      |+..|......+++.+|++++|+|+++...-. ...++... .   ..++|+++++||+|+...
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~-~---~~~iPiiv~iNK~D~~~a  146 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVC-R---LRDTPIFTFINKLDRDGR  146 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHH-H---hcCCCEEEEEECCccccc
Confidence            99999887778889999999999998653221 22333332 2   257899999999998754

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.76  E-value=2e-17  Score=119.48  Aligned_cols=108  Identities=16%  Similarity=0.160  Sum_probs=78.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc--cc-----------------cccccceeEEEEEEc----------CEEEEEEecC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV--LS-----------------TVPTIGFNVEKVQYK----------NVIFTVWDVG   69 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~--~~-----------------~~~t~~~~~~~~~~~----------~~~~~i~D~~   69 (193)
                      +|+++|+.++|||||+++|....-  ..                 ...|.......+.+.          ...+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            689999999999999999975321  10                 011222222223332          6889999999


Q ss_pred             CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      |+..|......+++.+|++++|+|+.+....+.. ..+.....    .++|+|+|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCcc
Confidence            9999999999999999999999999876554432 23333322    357899999999976

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.76  E-value=9.8e-18  Score=121.16  Aligned_cols=159  Identities=23%  Similarity=0.327  Sum_probs=104.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc-cc---ccccceeEEEEEE-cCEEEEEEecCCCCCCHH-----hHHhhhcCCCEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL-ST---VPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRP-----LWRHYFNNTDGL   88 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~-~~---~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~-----~~~~~~~~~d~~   88 (193)
                      ||+++|+.++||||+.+-++.+..+ ++   ++|..++...+.. ..+.+.+||+||+..+-.     .....+++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            7999999999999999998877654 32   5788888777765 578999999999976544     357778999999


Q ss_pred             EEEEECCChh---hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHH--------HhhhCCCcCCCCceEEEE
Q 029446           89 IYVVDSLDRE---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV--------CEGLGLFDLKNRKWHIQG  157 (193)
Q Consensus        89 i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  157 (193)
                      |||+|+...+   .+......+..+.+.+  ++..+.+.+.|+|+..++...+.        .+.+.  ......+.++.
T Consensus        81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~s--p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~--~~~~~~~~~~~  156 (232)
T PF04670_consen   81 IYVFDAQSDDYDEDLAYLSDCIEALRQYS--PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELE--DLGIEDITFFL  156 (232)
T ss_dssp             EEEEETT-STCHHHHHHHHHHHHHHHHHS--TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHH--HTT-TSEEEEE
T ss_pred             EEEEEcccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhh--hccccceEEEe
Confidence            9999998433   2333334444444432  68889999999999875332221        11111  01111478999


Q ss_pred             eccccCCCHHHHHHHHHHHHHhhhc
Q 029446          158 TCALKGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       158 ~Sa~~~~gi~~~~~~l~~~~~~~~~  182 (193)
                      ||..+ +.+-+.+..+++.+.++..
T Consensus       157 TSI~D-~Sly~A~S~Ivq~LiP~~~  180 (232)
T PF04670_consen  157 TSIWD-ESLYEAWSKIVQKLIPNLS  180 (232)
T ss_dssp             E-TTS-THHHHHHHHHHHTTSTTHC
T ss_pred             ccCcC-cHHHHHHHHHHHHHcccHH
Confidence            99887 6799999999998876654

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.76  E-value=1.8e-17  Score=129.74  Aligned_cols=159  Identities=21%  Similarity=0.153  Sum_probs=104.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-------------------ccccccceeEEEEEEcCEEEEEEecCCCCCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-------------------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKL   74 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (193)
                      ....++|+++|+.++|||||+++|++....                   ....|.......+..+..++.+.||||+.+|
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            356799999999999999999999863110                   1122333333334446788999999999888


Q ss_pred             HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCCH-h----HHHhhhCCCcC
Q 029446           75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMKGAMTP-M----EVCEGLGLFDL  148 (193)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~-~----~~~~~~~~~~~  148 (193)
                      .......+..+|++++|+|+.+...-+ ....+.. ...   .+.|.+ +++||+|+.+.... +    ++...+.....
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~-~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~  163 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILL-ARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHH-HHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence            777777789999999999997643211 1122222 222   357875 68999999753221 1    22233322112


Q ss_pred             CCCceEEEEeccccCC----------CHHHHHHHHHHHH
Q 029446          149 KNRKWHIQGTCALKGD----------GLYEGLDWLASTL  177 (193)
Q Consensus       149 ~~~~~~~~~~Sa~~~~----------gi~~~~~~l~~~~  177 (193)
                      ...+++++++||+++.          ++..+++.|.+.+
T Consensus       164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            2345789999999875          5677777777654

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=3.7e-17  Score=113.66  Aligned_cols=165  Identities=24%  Similarity=0.336  Sum_probs=120.4

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhc---CCCEE
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFN---NTDGL   88 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~   88 (193)
                      ....++-.|+++|..++|||+|+-+|..+....+.+....+...+..+.-...++|.||+.+.+.....++.   .+-++
T Consensus        33 ~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   33 FRRSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             HhhccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            344555789999999999999999999997766666667777777777777999999999999988888877   79999


Q ss_pred             EEEEECC-ChhhHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhh----------------------
Q 029446           89 IYVVDSL-DRERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAMTPMEVCEGL----------------------  143 (193)
Q Consensus        89 i~v~d~~-~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------------------  143 (193)
                      +||+|.. .......+..++-+++...  .....|+++++||.|+......+.+...+                      
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~  192 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI  192 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence            9999985 2233344444555554433  34678999999999998643332221111                      


Q ss_pred             -------------CCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446          144 -------------GLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus       144 -------------~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                                   ....+....+.+.++|++++ +++++.+||.+++
T Consensus       193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                         01122335678999999988 7999999998753

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.75  E-value=9.4e-18  Score=116.38  Aligned_cols=123  Identities=26%  Similarity=0.403  Sum_probs=79.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE---cCEEEEEEecCCCCCCHHhHHhh---hcCCCEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY---KNVIFTVWDVGGQEKLRPLWRHY---FNNTDGLI   89 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~---~~~~d~~i   89 (193)
                      +.-.|+++|++|+|||+|+.+|..+....+.+....+. ....   ....+.++|+||+.+.+......   ..++.++|
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II   80 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII   80 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence            45679999999999999999999997765544443333 2222   45689999999999998765554   78999999


Q ss_pred             EEEECCC-hhhHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHhHH
Q 029446           90 YVVDSLD-RERIGKAKQEFQAIIKD--PFMLNSVILVFANKQDMKGAMTPMEV  139 (193)
Q Consensus        90 ~v~d~~~-~~s~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~Dl~~~~~~~~~  139 (193)
                      ||+|++. ...+.+..+.+-.++..  .....+|++|++||.|+........+
T Consensus        81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~I  133 (181)
T PF09439_consen   81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKI  133 (181)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHH
T ss_pred             EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHH
Confidence            9999973 44555555555555542  22467899999999999876544333

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.74  E-value=7.9e-20  Score=123.99  Aligned_cols=161  Identities=19%  Similarity=0.245  Sum_probs=129.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      -++++|+|..++|||++++++....++ .+-.|++.+..  ..++   ..+++++||..||+++....+-+++.+.+.++
T Consensus        25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i  104 (229)
T KOG4423|consen   25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI  104 (229)
T ss_pred             hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence            489999999999999999999988887 56688887653  3444   34788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCCCCCHh--HHHhhhCCCcCCCCce-EEEEeccccCC
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKD---PFMLNSVILVFANKQDMKGAMTPM--EVCEGLGLFDLKNRKW-HIQGTCALKGD  164 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (193)
                      |||+++.-+|+....|.+++...   +.....|+++..||||..+....+  +...++.    ++.++ .++++|++.+.
T Consensus       105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~----kengf~gwtets~Kenk  180 (229)
T KOG4423|consen  105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFK----KENGFEGWTETSAKENK  180 (229)
T ss_pred             EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHH----hccCccceeeecccccc
Confidence            99999999999999999998764   344568899999999987653222  1111111    22333 49999999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q 029446          165 GLYEGLDWLASTLKEMR  181 (193)
Q Consensus       165 gi~~~~~~l~~~~~~~~  181 (193)
                      +++|.-..+++++.-+.
T Consensus       181 ni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  181 NIPEAQRELVEKILVND  197 (229)
T ss_pred             ChhHHHHHHHHHHHhhc
Confidence            99999999999887554

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.74  E-value=3.5e-17  Score=108.86  Aligned_cols=135  Identities=19%  Similarity=0.230  Sum_probs=89.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCC----CCCCHHhHHhhhcCCCEEEEEEEC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGG----QEKLRPLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g----~~~~~~~~~~~~~~~d~~i~v~d~   94 (193)
                      ||+++|+.|||||||+++|.+.... +..|-.+.+.        =..+||||    ...+.........++|.++++.|+
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~-~~KTq~i~~~--------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da   73 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR-YKKTQAIEYY--------DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA   73 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC-cCccceeEec--------ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence            7899999999999999999986653 2233322221        13489999    333444444455789999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHH
Q 029446           95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG-AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  173 (193)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  173 (193)
                      +++.+.-.  ..+...      -++|+|=|+||+|+.. ....+...+.+...-++    .+|++|+.+|+|++++.++|
T Consensus        74 t~~~~~~p--P~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L  141 (143)
T PF10662_consen   74 TEPRSVFP--PGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDYL  141 (143)
T ss_pred             CCCCccCC--chhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHHH
Confidence            97643111  111111      2578999999999993 32333333333321111    36999999999999999887


Q ss_pred             H
Q 029446          174 A  174 (193)
Q Consensus       174 ~  174 (193)
                      .
T Consensus       142 ~  142 (143)
T PF10662_consen  142 E  142 (143)
T ss_pred             h
Confidence            4

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PLN03126 Elongation factor Tu; Provisional

Probab=99.74  E-value=9.7e-17  Score=127.63  Aligned_cols=147  Identities=22%  Similarity=0.169  Sum_probs=97.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCc------c-------------ccccccceeEEEEEEcCEEEEEEecCCCCCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV------L-------------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKL   74 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~------~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (193)
                      ....++|+++|++++|||||+++|+...-      .             ....|.......+..++.++.++|+||+.+|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            34578999999999999999999985210      0             0112222333344556789999999999999


Q ss_pred             HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCcC
Q 029446           75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-M----EVCEGLGLFDL  148 (193)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~----~~~~~~~~~~~  148 (193)
                      .......+..+|++++|+|+.+...-+. ...+..+ ..   .++| +|+++||+|+.+..+. +    ++...+....+
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~  232 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLA-KQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHH-HH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence            8888888889999999999986532221 2233322 22   3567 7889999999763221 2    22222222112


Q ss_pred             CCCceEEEEeccccCCC
Q 029446          149 KNRKWHIQGTCALKGDG  165 (193)
Q Consensus       149 ~~~~~~~~~~Sa~~~~g  165 (193)
                      ...+++++++|+.++.+
T Consensus       233 ~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        233 PGDDIPIISGSALLALE  249 (478)
T ss_pred             CcCcceEEEEEcccccc
Confidence            23468999999998753

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.74  E-value=3.5e-17  Score=121.40  Aligned_cols=160  Identities=24%  Similarity=0.197  Sum_probs=110.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEE-cCEEEEEEecCCCCC-------CHHhHHhhhcCCCE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQY-KNVIFTVWDVGGQEK-------LRPLWRHYFNNTDG   87 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~-~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d~   87 (193)
                      .|.++|.||+|||||++.++.....  +| .+|.-.+...+.. ...+|.+-|.||--+       .-...-..++.|.+
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v  240 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV  240 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence            5789999999999999999987754  44 3666666666664 567799999999222       11122233578999


Q ss_pred             EEEEEECCChh---hHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446           88 LIYVVDSLDRE---RIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALK  162 (193)
Q Consensus        88 ~i~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (193)
                      ++.|+|++..+   ..+.......++... ....++|.++|+||+|+... +..++..+.+...  ..+...++ +||.+
T Consensus       241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~--~~~~~~~~-ISa~t  317 (369)
T COG0536         241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA--LGWEVFYL-ISALT  317 (369)
T ss_pred             eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh--cCCCccee-eehhc
Confidence            99999998543   344444444444332 35578999999999996554 3334444444311  11111233 99999


Q ss_pred             CCCHHHHHHHHHHHHHhhh
Q 029446          163 GDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       163 ~~gi~~~~~~l~~~~~~~~  181 (193)
                      ++|++++...+.+.+.+..
T Consensus       318 ~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         318 REGLDELLRALAELLEETK  336 (369)
T ss_pred             ccCHHHHHHHHHHHHHHhh
Confidence            9999999999999988775

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.74  E-value=2.8e-17  Score=131.04  Aligned_cols=153  Identities=18%  Similarity=0.089  Sum_probs=98.2

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCc--cc------------c----------------------ccccceeEEEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEV--LS------------T----------------------VPTIGFNVEKV   56 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~--~~------------~----------------------~~t~~~~~~~~   56 (193)
                      .....++|+++|++++|||||+++|+...-  ..            .                      ..|+...+..+
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            346779999999999999999999975321  10            0                      11223333344


Q ss_pred             EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-
Q 029446           57 QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-  135 (193)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-  135 (193)
                      ..+..++.++||||++.|.......+..+|++++|+|+.....-+.  .....+....  ...|+|+++||+|+.+... 
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt--~~~~~l~~~l--g~~~iIvvvNKiD~~~~~~~  178 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT--RRHSFIATLL--GIKHLVVAVNKMDLVDYSEE  178 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc--hHHHHHHHHh--CCCceEEEEEeeccccchhH
Confidence            5567899999999999987776666799999999999975421111  1111111111  1247899999999975322 


Q ss_pred             -HhHHHhhhCC--CcCC-CCceEEEEeccccCCCHHHH
Q 029446          136 -PMEVCEGLGL--FDLK-NRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus       136 -~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~gi~~~  169 (193)
                       ..++.+.+..  .... ....+++++||++|+|++++
T Consensus       179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence             2223222210  0001 22468999999999998764

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.74  E-value=2.3e-16  Score=131.38  Aligned_cols=115  Identities=19%  Similarity=0.160  Sum_probs=85.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC--cc------------c-------cccccceeEEEEEEcCEEEEEEecCCCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGE--VL------------S-------TVPTIGFNVEKVQYKNVIFTVWDVGGQE   72 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~--~~------------~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~   72 (193)
                      ..+--+|+|+|++++|||||+++|....  ..            +       ...|.......+.+++.++.+|||||+.
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~   86 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV   86 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence            3455699999999999999999996311  10            0       1223344456677789999999999999


Q ss_pred             CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      ++...+..+++.+|++++|+|+.+....+.. ..+..+ ..   .++|+++++||+|+...
T Consensus        87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~-~~---~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQA-NR---YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence            9888888899999999999999875444332 233333 22   46899999999998753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.73  E-value=4.5e-17  Score=134.48  Aligned_cols=160  Identities=18%  Similarity=0.088  Sum_probs=102.7

Q ss_pred             HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--------------c----------------------ccc
Q 029446            5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS--------------T----------------------VPT   48 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~--------------~----------------------~~t   48 (193)
                      +..++........++|+++|++++|||||+++|+...-..              .                      +.|
T Consensus        12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T   91 (632)
T PRK05506         12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT   91 (632)
T ss_pred             HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence            4556666666778999999999999999999998632110              0                      112


Q ss_pred             cceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446           49 IGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ  128 (193)
Q Consensus        49 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  128 (193)
                      ....+..+..++.++.++||||++.|.......+..+|++++|+|+.....-+.  .....+....  ...|+|+++||+
T Consensus        92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t--~e~~~~~~~~--~~~~iivvvNK~  167 (632)
T PRK05506         92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT--RRHSFIASLL--GIRHVVLAVNKM  167 (632)
T ss_pred             ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC--HHHHHHHHHh--CCCeEEEEEEec
Confidence            222333455567889999999998887766667889999999999975432111  1111112211  235788999999


Q ss_pred             CCCCCCC--HhHHHhhhCC--CcCCCCceEEEEeccccCCCHHH
Q 029446          129 DMKGAMT--PMEVCEGLGL--FDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       129 Dl~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      |+.+...  ..++..++..  ....-..++++++||++|.|+++
T Consensus       168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            9975321  2222222210  00111235799999999999874

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.73  E-value=4.8e-17  Score=127.80  Aligned_cols=147  Identities=18%  Similarity=0.103  Sum_probs=94.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC--ccc------------c----------------------ccccceeEEEEEEcCE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE--VLS------------T----------------------VPTIGFNVEKVQYKNV   61 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~--~~~------------~----------------------~~t~~~~~~~~~~~~~   61 (193)
                      ++|+++|+.++|||||+++|+...  ...            .                      ..|....+..+..++.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            589999999999999999996421  100            0                      1123333444555678


Q ss_pred             EEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHH
Q 029446           62 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEV  139 (193)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~  139 (193)
                      ++.++||||+++|.......+..+|++++|+|+.....-+.  .....+....  ...++|+++||+|+.+...  .+++
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt--~~~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i  156 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT--RRHSYIASLL--GIRHVVLAVNKMDLVDYDEEVFENI  156 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc--HHHHHHHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence            99999999999998777777899999999999975432111  1111122211  2346889999999875321  1122


Q ss_pred             HhhhCC--CcCCCCceEEEEeccccCCCHHH
Q 029446          140 CEGLGL--FDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       140 ~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      .+.+..  .......++++++||++|+|+++
T Consensus       157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            222210  00111245799999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.73  E-value=5.8e-17  Score=128.37  Aligned_cols=152  Identities=22%  Similarity=0.183  Sum_probs=100.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC--Ccc-------------------------c-------cccccceeEEEEEEc
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG--EVL-------------------------S-------TVPTIGFNVEKVQYK   59 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~--~~~-------------------------~-------~~~t~~~~~~~~~~~   59 (193)
                      ....++|+++|+.++|||||+.+|+..  ...                         +       ...|.......+.++
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            356789999999999999999998751  100                         0       122333444556667


Q ss_pred             CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh---hH--HHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCC--
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI--GKAKQEFQAIIKDPFMLNSV-ILVFANKQDMK--  131 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~--  131 (193)
                      ...+.++|+||+.+|.......+..+|++++|+|+....   .+  +........+...   .++| +|+++||+|..  
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTV  160 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccc
Confidence            889999999999999988888889999999999998642   01  0111111222222   3554 67999999943  


Q ss_pred             CC--CCHhH----HHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446          132 GA--MTPME----VCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       132 ~~--~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      +.  ...++    +...+....+...+++++++|+.+|+|+.+
T Consensus       161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            21  22222    333332222233468999999999999864

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.73  E-value=6e-17  Score=128.22  Aligned_cols=150  Identities=19%  Similarity=0.170  Sum_probs=98.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC--cc-------------------------c-------cccccceeEEEEEEcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGE--VL-------------------------S-------TVPTIGFNVEKVQYKN   60 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~--~~-------------------------~-------~~~t~~~~~~~~~~~~   60 (193)
                      ...++|+++|+.++|||||+.+|+...  ..                         +       ...|.......+....
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            456899999999999999998886311  00                         0       1223334444455578


Q ss_pred             EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHH------HHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCC
Q 029446           61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG------KAKQEFQAIIKDPFMLNS-VILVFANKQDMKGA  133 (193)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~  133 (193)
                      ..+.++|+||+++|.......+..+|++++|+|+++. .|+      ........+...   .++ ++|+++||+|+.+.
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTP  160 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCch
Confidence            8999999999999999999999999999999999863 222      111112222221   355 47889999997631


Q ss_pred             ----CCH----hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446          134 ----MTP----MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       134 ----~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                          ...    +++...+....+...+++++++||.+|+|+.+
T Consensus       161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence                111    22222222212223357899999999999853

>TIGR00503 prfC peptide chain release factor 3

Probab=99.72  E-value=4.9e-16  Score=125.13  Aligned_cols=112  Identities=20%  Similarity=0.281  Sum_probs=80.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc--CCccc----------------c-------ccccceeEEEEEEcCEEEEEEecC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI--GEVLS----------------T-------VPTIGFNVEKVQYKNVIFTVWDVG   69 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~--~~~~~----------------~-------~~t~~~~~~~~~~~~~~~~i~D~~   69 (193)
                      .+.-+|+|+|++++|||||+++|+.  +....                .       ..++......+.+++..+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4677999999999999999999852  21110                0       111222334566788999999999


Q ss_pred             CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                      |+..|.......+..+|++++|+|+++..  +.. ..++. ....   .++|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv--~~~t~~l~~-~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV--ETRTRKLME-VTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCC--CHHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence            99988887777889999999999998642  222 23333 3332   5789999999999863

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.72  E-value=2.2e-16  Score=124.90  Aligned_cols=160  Identities=19%  Similarity=0.172  Sum_probs=103.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC------Cc------cc-------cccccceeEEEEEEcCEEEEEEecCCCCCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG------EV------LS-------TVPTIGFNVEKVQYKNVIFTVWDVGGQEKL   74 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~------~~------~~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (193)
                      ....++|+++|+.++|||||+++|.+.      ..      .+       ...|.......+..++.++.+.||||+..|
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            456789999999999999999999732      10      00       123444444445556789999999999998


Q ss_pred             HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCcC
Q 029446           75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-M----EVCEGLGLFDL  148 (193)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~----~~~~~~~~~~~  148 (193)
                      .......+..+|++++|+|+.+...  .....+..++..   .++| +|+++||+|+.+.... +    ++.+.+.....
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~--~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPM--PQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc--hhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            8877777788999999999976432  111222222222   4577 5789999999863221 1    12222221112


Q ss_pred             CCCceEEEEeccc---cCCC-------HHHHHHHHHHHHH
Q 029446          149 KNRKWHIQGTCAL---KGDG-------LYEGLDWLASTLK  178 (193)
Q Consensus       149 ~~~~~~~~~~Sa~---~~~g-------i~~~~~~l~~~~~  178 (193)
                      ....++++++|+.   ++.|       +.++++.+.+.+.
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            2345789988876   4444       6778888777654

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.72  E-value=4.3e-16  Score=118.03  Aligned_cols=154  Identities=23%  Similarity=0.218  Sum_probs=96.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCcc-------ccccccceeEEEE-------------------E-EcCEEEEEEecCCC-
Q 029446           20 VVMLGLDAAGKTTILYKLHIGEVL-------STVPTIGFNVEKV-------------------Q-YKNVIFTVWDVGGQ-   71 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~~~~-------~~~~t~~~~~~~~-------------------~-~~~~~~~i~D~~g~-   71 (193)
                      |+++|.+|+|||||+|++++....       ...|+.|..+...                   + ...+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999987643       1123333333211                   0 13478999999996 


Q ss_pred             ---CCCHHhHHh---hhcCCCEEEEEEECCC---------------h-hhHHHHHHH-----------------------
Q 029446           72 ---EKLRPLWRH---YFNNTDGLIYVVDSLD---------------R-ERIGKAKQE-----------------------  106 (193)
Q Consensus        72 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~-~s~~~~~~~-----------------------  106 (193)
                         .++..+...   .++++|++++|+|++.               + ..++.+...                       
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               445444333   4789999999999973               1 011111110                       


Q ss_pred             ---------------------HHHHHcCC---------------------CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC
Q 029446          107 ---------------------FQAIIKDP---------------------FMLNSVILVFANKQDMKGAMTPMEVCEGLG  144 (193)
Q Consensus       107 ---------------------~~~~~~~~---------------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  144 (193)
                                           +..++...                     ....+|+|+|+||+|+....   +..+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~---~~~~~l~  237 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAE---NNISKLR  237 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChH---HHHHHHH
Confidence                                 00111000                     02357999999999976432   2222221


Q ss_pred             CCcCCCCceEEEEeccccCCCHHHHHH-HHHHHHHh
Q 029446          145 LFDLKNRKWHIQGTCALKGDGLYEGLD-WLASTLKE  179 (193)
Q Consensus       145 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~-~l~~~~~~  179 (193)
                      .   .....+++++||+.+.+++++.+ .+.+++++
T Consensus       238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe  270 (318)
T cd01899         238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG  270 (318)
T ss_pred             h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence            1   12234799999999999999998 68888864

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.71  E-value=2.2e-17  Score=129.57  Aligned_cols=160  Identities=16%  Similarity=0.186  Sum_probs=120.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeE---EEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV---EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ..+.++|+++|+.|+||||||-++....+++..|..-..+   ..+.-..+...|.|++..+.-+.....-++.+|++.+
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            4578999999999999999999999998875433332111   2233345678999999877777666777799999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCH--hH----HHhhhCCCcCCCCceEEEEecccc
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAMTP--ME----VCEGLGLFDLKNRKWHIQGTCALK  162 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~Sa~~  162 (193)
                      +++.+++.+++.+...|...++..  ...+.|+|+|+||+|.......  +.    +..++...      -.+++|||++
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei------EtciecSA~~  159 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI------ETCIECSALT  159 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH------HHHHhhhhhh
Confidence            999999999999998888777753  2367999999999998764322  11    22222211      1389999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 029446          163 GDGLYEGLDWLASTLKE  179 (193)
Q Consensus       163 ~~gi~~~~~~l~~~~~~  179 (193)
                      ..++.++|..-.+.+..
T Consensus       160 ~~n~~e~fYyaqKaVih  176 (625)
T KOG1707|consen  160 LANVSELFYYAQKAVIH  176 (625)
T ss_pred             hhhhHhhhhhhhheeec
Confidence            99999999887776643

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=2.2e-16  Score=123.31  Aligned_cols=160  Identities=18%  Similarity=0.145  Sum_probs=114.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCc-----------cc---cccccceeE----EEEEEcC---EEEEEEecCCCCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEV-----------LS---TVPTIGFNV----EKVQYKN---VIFTVWDVGGQEK   73 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~-----------~~---~~~t~~~~~----~~~~~~~---~~~~i~D~~g~~~   73 (193)
                      ++-=++.|+.+..-|||||..+|..-.-           -+   .....|+++    ..+.+..   +.+.++|||||.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            3445889999999999999999975211           00   112223333    3455544   8999999999999


Q ss_pred             CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce
Q 029446           74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW  153 (193)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  153 (193)
                      |.......+.-|+++++|+|++..-.-+....++..+-     .+..+|.|+||+|+...+ ++++...+.. .+.....
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~ad-pe~V~~q~~~-lF~~~~~  210 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSAD-PERVENQLFE-LFDIPPA  210 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCC-HHHHHHHHHH-HhcCCcc
Confidence            99998888899999999999987655555555555442     467799999999998863 3333322211 1122233


Q ss_pred             EEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          154 HIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       154 ~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      +++.+||++|.|+++++++|++.++.-.
T Consensus       211 ~~i~vSAK~G~~v~~lL~AII~rVPpP~  238 (650)
T KOG0462|consen  211 EVIYVSAKTGLNVEELLEAIIRRVPPPK  238 (650)
T ss_pred             ceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence            7999999999999999999999886544

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.71  E-value=8.8e-16  Score=100.51  Aligned_cols=103  Identities=23%  Similarity=0.294  Sum_probs=72.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc---c-cccccceeEEEEEEcCEEEEEEecCCCCCC---------HHhHHhhhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL---S-TVPTIGFNVEKVQYKNVIFTVWDVGGQEKL---------RPLWRHYFNNT   85 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~---~-~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~~   85 (193)
                      +|+|+|.+|+|||||+|+|++....   . ...|....+..+......+.++||||-..-         .......+..+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS   80 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence            6899999999999999999986432   2 234555555667778899999999995432         11123334789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK  127 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK  127 (193)
                      |++++|+|++++.. +.....+..+ +    .+.|+++|+||
T Consensus        81 d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK  116 (116)
T PF01926_consen   81 DLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK  116 (116)
T ss_dssp             SEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred             CEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence            99999999877322 2222333333 2    57999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.71  E-value=1.2e-16  Score=126.26  Aligned_cols=163  Identities=13%  Similarity=0.099  Sum_probs=105.9

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc------cccccceeEEEE-----------------EE-----------
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS------TVPTIGFNVEKV-----------------QY-----------   58 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~------~~~t~~~~~~~~-----------------~~-----------   58 (193)
                      ..+..++|+++|+...|||||+..|++-....      ...|...-+...                 ..           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            45677999999999999999999999743211      122221111100                 00           


Q ss_pred             -----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           59 -----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        59 -----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                           ....+.++|+||++.|-......+..+|++++|+|+.+.. .-+.. ..+ .+....  .-.|+|+|+||+|+.+
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~l--gi~~iIVvlNKiDlv~  185 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIM--KLKHIIILQNKIDLVK  185 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHc--CCCcEEEEEecccccC
Confidence                 0247899999999999888888888999999999998631 11111 111 222211  2246899999999986


Q ss_pred             CCCHhHHHhhhCCC--cCCCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446          133 AMTPMEVCEGLGLF--DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       133 ~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                      .....+..+++...  .......+++++||++|+|+++|++.|.+.+..
T Consensus       186 ~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        186 EAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            43322222211100  001245689999999999999999999976653

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.70  E-value=7.1e-16  Score=110.09  Aligned_cols=163  Identities=17%  Similarity=0.071  Sum_probs=101.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc-----ccccceeEEEEEEcCEEEEEEecCCCCCCH-------Hh----HHhh
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLST-----VPTIGFNVEKVQYKNVIFTVWDVGGQEKLR-------PL----WRHY   81 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~----~~~~   81 (193)
                      .+|+++|.+|+|||||+|.+++......     ..|.........+.+.++.++||||-....       ..    ....
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            4799999999999999999998765422     245555555666688899999999944321       11    1122


Q ss_pred             hcCCCEEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcCCCCceEEEE
Q 029446           82 FNNTDGLIYVVDSLDR-ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---LFDLKNRKWHIQG  157 (193)
Q Consensus        82 ~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~  157 (193)
                      ..++|++++|+++.+. .....+.+++.+.....  .-.++|++.|+.|.......++......   ....+.++-.++.
T Consensus        81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~  158 (196)
T cd01852          81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA  158 (196)
T ss_pred             CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence            3578999999999762 12222333444433211  1246899999999776543333221111   0011233334545


Q ss_pred             ec-----cccCCCHHHHHHHHHHHHHhhhc
Q 029446          158 TC-----ALKGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       158 ~S-----a~~~~gi~~~~~~l~~~~~~~~~  182 (193)
                      ++     +..+.+++++++.|.+.+.+...
T Consensus       159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~  188 (196)
T cd01852         159 FNNKAKGEEQEQQVKELLAKVESMVKENGG  188 (196)
T ss_pred             EeCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence            54     34567899999999999877553

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=8.6e-16  Score=120.06  Aligned_cols=156  Identities=23%  Similarity=0.162  Sum_probs=116.4

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      ...+++-|-|+|+..-|||||+..|.+......   +.|-.+-...+.. ++.++++.||||+..|...+....+..|.+
T Consensus       149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv  228 (683)
T KOG1145|consen  149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIV  228 (683)
T ss_pred             cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence            345888999999999999999999998876532   1222222223322 678999999999999999998888899999


Q ss_pred             EEEEECCCh---hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC----CCCceEEEEeccc
Q 029446           89 IYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL----KNRKWHIQGTCAL  161 (193)
Q Consensus        89 i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~  161 (193)
                      ++|+.+.|.   ++.+.+        +.....+.|+|+.+||+|.+.. .++.+.+++.....    -..+++++++||+
T Consensus       229 VLVVAadDGVmpQT~EaI--------khAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl  299 (683)
T KOG1145|consen  229 VLVVAADDGVMPQTLEAI--------KHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISAL  299 (683)
T ss_pred             EEEEEccCCccHhHHHHH--------HHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence            999999764   333322        2233478999999999997765 45555555543222    2356899999999


Q ss_pred             cCCCHHHHHHHHHHHH
Q 029446          162 KGDGLYEGLDWLASTL  177 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~  177 (193)
                      +|+|++.+.+.+.-..
T Consensus       300 ~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  300 TGENLDLLEEAILLLA  315 (683)
T ss_pred             cCCChHHHHHHHHHHH
Confidence            9999999998877654

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=4.8e-16  Score=121.61  Aligned_cols=155  Identities=25%  Similarity=0.183  Sum_probs=112.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeE----EEEEE---cCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV----EKVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      .+++-|.++|+..-|||||+..+........ ..-|++.    +.+..   ..-.+.+.|||||+.|..++....+-+|.
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~-EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI   81 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI   81 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccc-cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence            4678899999999999999999987766532 1222222    23333   23589999999999999999888899999


Q ss_pred             EEEEEECCCh---hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC----CCCceEEEEecc
Q 029446           88 LIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL----KNRKWHIQGTCA  160 (193)
Q Consensus        88 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa  160 (193)
                      ++||+++++.   ++.+++    ...    ...+.|+|+++||+|..+. .+..+..++....+    -.....++++||
T Consensus        82 aILVVa~dDGv~pQTiEAI----~ha----k~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA  152 (509)
T COG0532          82 AILVVAADDGVMPQTIEAI----NHA----KAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSA  152 (509)
T ss_pred             EEEEEEccCCcchhHHHHH----HHH----HHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeec
Confidence            9999999864   433332    122    2268999999999999864 33344333332211    124478999999


Q ss_pred             ccCCCHHHHHHHHHHHHHh
Q 029446          161 LKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~  179 (193)
                      ++|+|+++|+..+.-...-
T Consensus       153 ~tg~Gi~eLL~~ill~aev  171 (509)
T COG0532         153 KTGEGIDELLELILLLAEV  171 (509)
T ss_pred             cCCCCHHHHHHHHHHHHHH
Confidence            9999999999988765543

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=1.6e-15  Score=117.27  Aligned_cols=167  Identities=17%  Similarity=0.110  Sum_probs=110.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccccc----ccceeEEEEEEcCEEEEEEecCCCCC--C-------HHhHHhhh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVP----TIGFNVEKVQYKNVIFTVWDVGGQEK--L-------RPLWRHYF   82 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~g~~~--~-------~~~~~~~~   82 (193)
                      ..++|+|+|.||+|||||+|.|.+.+.....|    |-+.-...++.+++.+.+.||+|--+  .       -......+
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~  346 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI  346 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence            55999999999999999999999998765444    33444556778999999999999332  1       11123445


Q ss_pred             cCCCEEEEEEECC--ChhhHHHHHHHHHHHHc-----CCCCCCCeEEEEEeCCCCCCCCCHhHH-HhhhCCCcCCCCceE
Q 029446           83 NNTDGLIYVVDSL--DRERIGKAKQEFQAIIK-----DPFMLNSVILVFANKQDMKGAMTPMEV-CEGLGLFDLKNRKWH  154 (193)
Q Consensus        83 ~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~-----~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~  154 (193)
                      ..+|++++|+|+.  +-.+-..+...+...-.     -+.....|+|++.||+|+......... ...+-........-.
T Consensus       347 ~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i  426 (531)
T KOG1191|consen  347 ERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPI  426 (531)
T ss_pred             hhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccce
Confidence            7899999999993  33333333333333321     123345789999999999876221111 111110011112223


Q ss_pred             EEEeccccCCCHHHHHHHHHHHHHhhhc
Q 029446          155 IQGTCALKGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       155 ~~~~Sa~~~~gi~~~~~~l~~~~~~~~~  182 (193)
                      +.++|+++++|++.+.+.+.+.+...+.
T Consensus       427 ~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  427 VVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             EEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            6669999999999999999998876654

>PRK12739 elongation factor G; Reviewed

Probab=99.67  E-value=2.4e-15  Score=125.36  Aligned_cols=115  Identities=18%  Similarity=0.159  Sum_probs=85.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC--C---c---c-------------ccccccceeEEEEEEcCEEEEEEecCCCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG--E---V---L-------------STVPTIGFNVEKVQYKNVIFTVWDVGGQE   72 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~--~---~---~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~   72 (193)
                      ..+..+|+|+|++++|||||+++|+..  .   .   .             ....|.......+.+++.++.++||||+.
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~   84 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV   84 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence            346679999999999999999999642  0   0   0             11234455566777789999999999998


Q ss_pred             CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      .+...+...++.+|++++|+|+.+...-+.. ..+..+ ..   .++|.|+++||+|+...
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~-~~---~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQA-DK---YGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence            8888888889999999999999865432221 223332 22   46899999999998854

>cd00066 G-alpha G protein alpha subunit

Probab=99.67  E-value=1.8e-15  Score=115.15  Aligned_cols=135  Identities=24%  Similarity=0.365  Sum_probs=103.9

Q ss_pred             cccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh----------hhHHHHHHHHHHHHcCCCC
Q 029446           47 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR----------ERIGKAKQEFQAIIKDPFM  116 (193)
Q Consensus        47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~  116 (193)
                      +|.|+....+.+++..+.+||++|+...+..|..++.+++++++|+|+++-          ..+.+....+..++.....
T Consensus       147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~  226 (317)
T cd00066         147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF  226 (317)
T ss_pred             ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence            455677777778889999999999999999999999999999999999863          5788888888888888777


Q ss_pred             CCCeEEEEEeCCCCCCC------------------CCHhHH----HhhhCCCcC-CCCceEEEEeccccCCCHHHHHHHH
Q 029446          117 LNSVILVFANKQDMKGA------------------MTPMEV----CEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWL  173 (193)
Q Consensus       117 ~~~p~ivv~nK~Dl~~~------------------~~~~~~----~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l  173 (193)
                      .+.|+++++||.|+..+                  .+.++.    ...+..... ..+.+.+..++|.+-.++..+|+.+
T Consensus       227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v  306 (317)
T cd00066         227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV  306 (317)
T ss_pred             cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence            89999999999996531                  111111    111111111 2356677889999999999999999


Q ss_pred             HHHHHhhh
Q 029446          174 ASTLKEMR  181 (193)
Q Consensus       174 ~~~~~~~~  181 (193)
                      .+.+....
T Consensus       307 ~~~i~~~~  314 (317)
T cd00066         307 KDIILQNN  314 (317)
T ss_pred             HHHHHHHH
Confidence            98887554

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.67  E-value=9.9e-16  Score=118.02  Aligned_cols=154  Identities=17%  Similarity=0.184  Sum_probs=113.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc-----------cc---cccccceeE----EEEEE-----cCEEEEEEecCCCCCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEV-----------LS---TVPTIGFNV----EKVQY-----KNVIFTVWDVGGQEKL   74 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~-----------~~---~~~t~~~~~----~~~~~-----~~~~~~i~D~~g~~~~   74 (193)
                      =++.++.+-.-|||||..++....-           -+   .....|+++    .++.+     ..+.+.++|||||.+|
T Consensus        10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF   89 (603)
T COG0481          10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   89 (603)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence            3678899999999999999976321           01   111223332    23333     4589999999999999


Q ss_pred             HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcCCCC
Q 029446           75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNR  151 (193)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~  151 (193)
                      .-..+..+..|.++++++|++..-.-+.+...+..+-     .+..+|.|+||+||+..+..   +++.+.+++...   
T Consensus        90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~---  161 (603)
T COG0481          90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS---  161 (603)
T ss_pred             EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc---
Confidence            8888888899999999999987655555655565553     46779999999999986432   345555554322   


Q ss_pred             ceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          152 KWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       152 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                        ..+.+||++|.||+++++.|++.++.-.
T Consensus       162 --dav~~SAKtG~gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         162 --DAVLVSAKTGIGIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             --hheeEecccCCCHHHHHHHHHhhCCCCC
Confidence              4789999999999999999999987554

>smart00275 G_alpha G protein alpha subunit

Probab=99.66  E-value=3e-15  Score=114.86  Aligned_cols=134  Identities=22%  Similarity=0.352  Sum_probs=103.6

Q ss_pred             ccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCC
Q 029446           48 TIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPFML  117 (193)
Q Consensus        48 t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~  117 (193)
                      |+|+....+.+++..+.+||.+|+...+..|..++.++++++||+|+++          ...+.+....+..+++.....
T Consensus       171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~  250 (342)
T smart00275      171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA  250 (342)
T ss_pred             ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence            4566677777788999999999999999999999999999999999986          356888888899998887788


Q ss_pred             CCeEEEEEeCCCCCCC-----------------CCHhH----HHhhhCCCcC--CCCceEEEEeccccCCCHHHHHHHHH
Q 029446          118 NSVILVFANKQDMKGA-----------------MTPME----VCEGLGLFDL--KNRKWHIQGTCALKGDGLYEGLDWLA  174 (193)
Q Consensus       118 ~~p~ivv~nK~Dl~~~-----------------~~~~~----~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~~~~~l~  174 (193)
                      +.|+++++||.|+..+                 .+..+    +...+.....  ..+.+.+..++|.+-.++..+|+.+.
T Consensus       251 ~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~  330 (342)
T smart00275      251 NTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVK  330 (342)
T ss_pred             CCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHH
Confidence            9999999999998641                 01111    1122211111  23456778899999999999999988


Q ss_pred             HHHHhhh
Q 029446          175 STLKEMR  181 (193)
Q Consensus       175 ~~~~~~~  181 (193)
                      +.+....
T Consensus       331 ~~I~~~~  337 (342)
T smart00275      331 DIILQRN  337 (342)
T ss_pred             HHHHHHH
Confidence            8877544

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK12740 elongation factor G; Reviewed

Probab=99.66  E-value=4.4e-15  Score=123.72  Aligned_cols=106  Identities=20%  Similarity=0.209  Sum_probs=79.6

Q ss_pred             EcCCCCCHHHHHHHHhcCCc--------------c-------ccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhh
Q 029446           23 LGLDAAGKTTILYKLHIGEV--------------L-------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHY   81 (193)
Q Consensus        23 ~G~~~~GKssli~~l~~~~~--------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   81 (193)
                      +|++++|||||+++|....-              .       +...|++.....+.+.+..+.+|||||+..+...+..+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            59999999999999943210              0       11334555566777889999999999999888888888


Q ss_pred             hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           82 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      +..+|++++|+|++........ ..+..+..    .+.|+++|+||+|+...
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence            9999999999999876554433 23333322    46899999999998754

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.66  E-value=4.3e-16  Score=112.72  Aligned_cols=164  Identities=21%  Similarity=0.300  Sum_probs=113.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccee-EEEEEEcCEEEEEEecCCCCC-------CHHhHHhhh
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLS---TVPTIGFN-VEKVQYKNVIFTVWDVGGQEK-------LRPLWRHYF   82 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~-~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~   82 (193)
                      ...+++|+++|..|+||||+||+++++...+   .+.+..+. +....+....+.+||+||-.+       ++.....++
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l  115 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL  115 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence            4578999999999999999999999765543   23233222 333445567899999999444       777888899


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----------CH--hHHHhhh-C-CCcC
Q 029446           83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----------TP--MEVCEGL-G-LFDL  148 (193)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~--~~~~~~~-~-~~~~  148 (193)
                      ...|.+++++++.++. +..-..++.+++...  .+.|+++++|.+|...+.          +.  ++..++. . ....
T Consensus       116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999998764 333445666666542  358899999999976541          10  1110000 0 0000


Q ss_pred             CCCceEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446          149 KNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       149 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  180 (193)
                      -..-.|++..+.+.++|++.+...++..+...
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence            11123788888999999999999999988743

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.65  E-value=6.2e-15  Score=114.91  Aligned_cols=78  Identities=26%  Similarity=0.340  Sum_probs=55.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEE------------------------EcCEEEEEEecCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQ------------------------YKNVIFTVWDVGG   70 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~------------------------~~~~~~~i~D~~g   70 (193)
                      ++|+++|.||+|||||+|+|++....  .+ ..|...+.....                        .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999987654  22 233333332221                        1236799999999


Q ss_pred             C----CCCHHhHHhh---hcCCCEEEEEEECC
Q 029446           71 Q----EKLRPLWRHY---FNNTDGLIYVVDSL   95 (193)
Q Consensus        71 ~----~~~~~~~~~~---~~~~d~~i~v~d~~   95 (193)
                      -    .....+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            3    3333333333   78999999999996

>PRK00007 elongation factor G; Reviewed

Probab=99.65  E-value=7.7e-15  Score=122.31  Aligned_cols=115  Identities=19%  Similarity=0.159  Sum_probs=83.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc--CCc------c-------------ccccccceeEEEEEEcCEEEEEEecCCCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHI--GEV------L-------------STVPTIGFNVEKVQYKNVIFTVWDVGGQE   72 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~--~~~------~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~   72 (193)
                      ..+.-+|+|+|++++|||||+++|+.  +..      .             ....|.......+.+.+..+.++||||+.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~   86 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV   86 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence            34566999999999999999999963  110      0             11233334455677788999999999998


Q ss_pred             CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      .+.......+..+|++++|+|+.....-+.. ..+..+..    .++|.|+++||+|+...
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~----~~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADK----YKVPRIAFVNKMDRTGA  142 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence            8877777788999999999999765333322 22333322    46889999999998753

>cd01850 CDC_Septin CDC/Septin

Probab=99.64  E-value=9.8e-16  Score=114.43  Aligned_cols=140  Identities=13%  Similarity=0.155  Sum_probs=83.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------ccccceeEEE--EEEcC--EEEEEEecCCCCCCHH---
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST-----------VPTIGFNVEK--VQYKN--VIFTVWDVGGQEKLRP---   76 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~--~~~~~--~~~~i~D~~g~~~~~~---   76 (193)
                      .-.++|+++|.+|+|||||+|++++..+...           .+|+......  +..++  +++.+|||||-.....   
T Consensus         2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~   81 (276)
T cd01850           2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD   81 (276)
T ss_pred             CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence            3578999999999999999999999876422           2343333332  23333  6899999999332210   


Q ss_pred             -----------------------hHHhhhc--CCCEEEEEEECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446           77 -----------------------LWRHYFN--NTDGLIYVVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDM  130 (193)
Q Consensus        77 -----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl  130 (193)
                                             .+...+.  .+|+++++++.+.. .+... ...+..+ .    ...|+|+|+||+|+
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l-~----~~v~vi~VinK~D~  155 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRL-S----KRVNIIPVIAKADT  155 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHH-h----ccCCEEEEEECCCc
Confidence                                   0101222  47889999988742 22222 2333333 2    25889999999998


Q ss_pred             CCCCCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446          131 KGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      ....+.....+.. ...++..++++|.+...
T Consensus       156 l~~~e~~~~k~~i-~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         156 LTPEELKEFKQRI-MEDIEEHNIKIYKFPED  185 (276)
T ss_pred             CCHHHHHHHHHHH-HHHHHHcCCceECCCCC
Confidence            7643322222211 12234455677776643

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=3.9e-15  Score=113.22  Aligned_cols=152  Identities=20%  Similarity=0.225  Sum_probs=100.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC--cc-------------------------c-------cccccceeEEEEEEcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGE--VL-------------------------S-------TVPTIGFNVEKVQYKN   60 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~--~~-------------------------~-------~~~t~~~~~~~~~~~~   60 (193)
                      ...++++++|+..+|||||+-+|+-..  +.                         +       .+-|+......+....
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            457899999999999999999886421  00                         0       0123333333444467


Q ss_pred             EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh---h--HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 029446           61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---R--IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT  135 (193)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  135 (193)
                      ..+.|.|+||+..|-.........+|++|+|+|+.+.+   +  ...+......+.+...  -.-+||++||+|+.+.++
T Consensus        85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~wde  162 (428)
T COG5256          85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVSWDE  162 (428)
T ss_pred             ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEcccccccCH
Confidence            88999999999999999888889999999999998652   1  1112222222222211  234899999999998543


Q ss_pred             H--hHHHhhhCC----CcCCCCceEEEEeccccCCCHHH
Q 029446          136 P--MEVCEGLGL----FDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       136 ~--~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      .  +++...+..    .-....+++|+++|+..|+|+.+
T Consensus       163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            2  333332221    11233467899999999998765

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.61  E-value=4.3e-16  Score=114.49  Aligned_cols=111  Identities=23%  Similarity=0.228  Sum_probs=86.0

Q ss_pred             CCCHHhHHhhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcCC
Q 029446           72 EKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLK  149 (193)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~  149 (193)
                      +++..+.+.++.++|++++|+|++++. ++..+..|+..+..    .++|+++|+||+|+.+..... +..+.+     +
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~   94 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R   94 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence            667777778899999999999999887 89898888876532    578999999999997542221 222222     2


Q ss_pred             CCceEEEEeccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446          150 NRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  193 (193)
Q Consensus       150 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~  193 (193)
                      ..+++++++||++++|++++++.+.+.+  ....|.+++|||||
T Consensus        95 ~~g~~v~~~SAktg~gi~eLf~~l~~~~--~~~~G~sgvGKStL  136 (245)
T TIGR00157        95 NIGYQVLMTSSKNQDGLKELIEALQNRI--SVFAGQSGVGKSSL  136 (245)
T ss_pred             HCCCeEEEEecCCchhHHHHHhhhcCCE--EEEECCCCCCHHHH
Confidence            3567899999999999999999887643  33459999999975

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK13768 GTPase; Provisional

Probab=99.59  E-value=8.7e-15  Score=108.15  Aligned_cols=117  Identities=15%  Similarity=0.103  Sum_probs=73.7

Q ss_pred             EEEEEEecCCCCCCH---HhHHhhhc---C--CCEEEEEEECCChhhHHH-HHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           61 VIFTVWDVGGQEKLR---PLWRHYFN---N--TDGLIYVVDSLDRERIGK-AKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        61 ~~~~i~D~~g~~~~~---~~~~~~~~---~--~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      ..+.+||+||+.+..   ..+..+.+   .  .+++++++|+........ ...++....... ..+.|+++|+||+|+.
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~  175 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLL  175 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence            379999999976643   33322222   3  899999999965432222 222222211110 1478999999999998


Q ss_pred             CCCCHhHHHhhhCC--------C---------------cCC--CCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          132 GAMTPMEVCEGLGL--------F---------------DLK--NRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       132 ~~~~~~~~~~~~~~--------~---------------~~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      +..+.++..+.+..        .               .++  ....+++++|+++++|++++.++|.+.+.
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            76554443332221        0               011  12357899999999999999999988773

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.59  E-value=6e-14  Score=106.59  Aligned_cols=157  Identities=15%  Similarity=0.145  Sum_probs=99.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC----Cc--c--cccccc-------------------cee-EEE----------
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG----EV--L--STVPTI-------------------GFN-VEK----------   55 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~----~~--~--~~~~t~-------------------~~~-~~~----------   55 (193)
                      ....+.|.|.|.+|+|||||++.+...    ..  .  ...|..                   ... +..          
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~  132 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG  132 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence            467899999999999999999987531    10  0  000100                   001 111          


Q ss_pred             -----------EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446           56 -----------VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF  124 (193)
Q Consensus        56 -----------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv  124 (193)
                                 +...+..+.+.||+|.......   ....+|.++++.+......++.......++         .-|+|
T Consensus       133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~---------aDIiV  200 (332)
T PRK09435        133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMEL---------ADLIV  200 (332)
T ss_pred             hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhh---------hheEE
Confidence                       1112578999999996643333   356799999998755555555544322222         13899


Q ss_pred             EeCCCCCCCCCH----hHHHhhhCCCcC--CCCceEEEEeccccCCCHHHHHHHHHHHHHhhhc
Q 029446          125 ANKQDMKGAMTP----MEVCEGLGLFDL--KNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       125 ~nK~Dl~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~  182 (193)
                      +||+|+.+....    .++...+....-  ..+..+++.+||+++.|++++++.|.+++.....
T Consensus       201 VNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~  264 (332)
T PRK09435        201 INKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTA  264 (332)
T ss_pred             eehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            999998875432    334444443211  1244589999999999999999999998764443

>PRK09866 hypothetical protein; Provisional

Probab=99.59  E-value=8.7e-14  Score=111.92  Aligned_cols=113  Identities=16%  Similarity=0.092  Sum_probs=71.8

Q ss_pred             EEEEEEecCCCCC-----CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 029446           61 VIFTVWDVGGQEK-----LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT  135 (193)
Q Consensus        61 ~~~~i~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  135 (193)
                      .++.+.||||-..     ........+..+|+++||+|+++..+...  ..+.+.++... ...|+|+|+||+|+.+...
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree  306 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS  306 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence            5789999999543     12234457899999999999987433332  22233333211 2359999999999865322


Q ss_pred             --HhHHHhhhCCC--cCCCCceEEEEeccccCCCHHHHHHHHHHH
Q 029446          136 --PMEVCEGLGLF--DLKNRKWHIQGTCALKGDGLYEGLDWLAST  176 (193)
Q Consensus       136 --~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  176 (193)
                        .+.+.......  ...-....++++||+.|.|++++++.|.++
T Consensus       307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence              33333322100  001112369999999999999999999873

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.57  E-value=4.1e-15  Score=115.25  Aligned_cols=165  Identities=15%  Similarity=0.140  Sum_probs=115.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcCEEEEEEecCCCCC---C-----HHhHHhhh-
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKNVIFTVWDVGGQEK---L-----RPLWRHYF-   82 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~---~-----~~~~~~~~-   82 (193)
                      ...-.++|+|.||+|||||+|.++.....  .| .+|.+.-...+.++-..+++.||||--+   -     ......++ 
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA  245 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA  245 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence            35568899999999999999999887654  33 4666677777888889999999999211   1     11111222 


Q ss_pred             cCCCEEEEEEECCChh--hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           83 NNTDGLIYVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        83 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      +---+++|+.|++..+  |..+....+..+..  -+.+.|.|+|+||+|+....+..+..+++-.......+++++++|+
T Consensus       246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKp--LFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~  323 (620)
T KOG1490|consen  246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKP--LFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC  323 (620)
T ss_pred             HhhhhheeeeechhhhCCCHHHHHHHHHHhHH--HhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence            2346788999998654  56666666666644  3468999999999998876555444433322223445579999999


Q ss_pred             ccCCCHHHHHHHHHHHHHhhh
Q 029446          161 LKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      .+.+|+.++-..-++.+...+
T Consensus       324 ~~eegVm~Vrt~ACe~LLa~R  344 (620)
T KOG1490|consen  324 VQEEGVMDVRTTACEALLAAR  344 (620)
T ss_pred             cchhceeeHHHHHHHHHHHHH
Confidence            999999887776666655444

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.57  E-value=2.4e-14  Score=103.50  Aligned_cols=166  Identities=17%  Similarity=0.179  Sum_probs=106.1

Q ss_pred             hhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc-----c------cccccc------------------ceeE
Q 029446            3 QAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV-----L------STVPTI------------------GFNV   53 (193)
Q Consensus         3 ~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~-----~------~~~~t~------------------~~~~   53 (193)
                      ++++++|+.  ..+.+.|.|.|+||+|||||++.|...-.     .      ++.|-.                  ++.+
T Consensus        17 ~ll~~l~~~--~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfI   94 (266)
T PF03308_consen   17 ELLKRLYPH--TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFI   94 (266)
T ss_dssp             HHHHHHGGG--TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEE
T ss_pred             HHHHHHHhh--cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEE
Confidence            456777763  45789999999999999999999864210     0      011111                  1222


Q ss_pred             EEEEE--------------------cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcC
Q 029446           54 EKVQY--------------------KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD  113 (193)
Q Consensus        54 ~~~~~--------------------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  113 (193)
                      ..+.-                    .+..+.+++|.|--+.....   ..-+|.+++|..+.-.+.++.++.-+.++.. 
T Consensus        95 RS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I---~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD-  170 (266)
T PF03308_consen   95 RSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDI---ADMADTVVLVLVPGLGDEIQAIKAGIMEIAD-  170 (266)
T ss_dssp             EEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH---HTTSSEEEEEEESSTCCCCCTB-TTHHHH-S-
T ss_pred             eecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH---HHhcCeEEEEecCCCccHHHHHhhhhhhhcc-
Confidence            22211                    26789999999854444332   3569999999999888888888877777742 


Q ss_pred             CCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCc--CCCCceEEEEeccccCCCHHHHHHHHHHHHHhhhc
Q 029446          114 PFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFD--LKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       114 ~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~  182 (193)
                              |+|+||.|...... ..++...+.+..  ...+..|++.|||.+++|++++++.|.++......
T Consensus       171 --------i~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~  234 (266)
T PF03308_consen  171 --------IFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKE  234 (266)
T ss_dssp             --------EEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             --------EEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence                    89999999655422 234444443322  23466789999999999999999999987765544

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.55  E-value=1.3e-14  Score=105.99  Aligned_cols=112  Identities=14%  Similarity=0.075  Sum_probs=60.7

Q ss_pred             EEEEEecCCCCCCHHhHHhhh--------cCCCEEEEEEECCChh---hHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCC
Q 029446           62 IFTVWDVGGQEKLRPLWRHYF--------NNTDGLIYVVDSLDRE---RIGKAK-QEFQAIIKDPFMLNSVILVFANKQD  129 (193)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~---s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D  129 (193)
                      .+.++|||||.++...+....        ...-++++++|+....   .|-... ....-..+    .+.|.|.|+||+|
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D  167 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID  167 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence            799999999999877665554        4567889999986433   232221 11111111    4799999999999


Q ss_pred             CCCCC---------C-----------HhHHHhhhCCCcCCCCce-EEEEeccccCCCHHHHHHHHHHHH
Q 029446          130 MKGAM---------T-----------PMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus       130 l~~~~---------~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      +.+..         +           .....+.+......-... .++++|+.+++|+++++..+-+.+
T Consensus       168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            98721         0           111112221111112223 799999999999999999887764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.54  E-value=7.4e-14  Score=116.86  Aligned_cols=113  Identities=19%  Similarity=0.118  Sum_probs=80.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC---------------Cccc----cccccceeEE----EEEEcCEEEEEEecCCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG---------------EVLS----TVPTIGFNVE----KVQYKNVIFTVWDVGGQ   71 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~---------------~~~~----~~~t~~~~~~----~~~~~~~~~~i~D~~g~   71 (193)
                      .+.-+|+++|+.++|||||+++|...               .+..    ...|......    ...+.+.++.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            45679999999999999999999742               1111    1224333322    24556889999999999


Q ss_pred             CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                      .+|......+++.+|++++|+|+......+.. ..+.....    .+.|.++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~----~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK----ENVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH----cCCCEEEEEEChhccc
Confidence            99988888899999999999999764322221 22222222    4567899999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.53  E-value=6.8e-14  Score=107.80  Aligned_cols=158  Identities=16%  Similarity=0.199  Sum_probs=112.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC--ccc-------------cccccceeE----EEEEEcCEEEEEEecCCCCCCHHhHH
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE--VLS-------------TVPTIGFNV----EKVQYKNVIFTVWDVGGQEKLRPLWR   79 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~--~~~-------------~~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (193)
                      +|+|+.+..-|||||+..|+...  |.+             .....|+++    ..+.++++.+.|.||||+..|-....
T Consensus         7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE   86 (603)
T COG1217           7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE   86 (603)
T ss_pred             eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence            78999999999999999998632  211             112223443    45788999999999999999999998


Q ss_pred             hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---C--cCCCCceE
Q 029446           80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL---F--DLKNRKWH  154 (193)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~--~~~~~~~~  154 (193)
                      ..+.=.|.+++++|+.+.. +-...-.+.+.+.    .+.+.|+|+||+|.......+-+.+.+.+   .  ...++++|
T Consensus        87 Rvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP  161 (603)
T COG1217          87 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP  161 (603)
T ss_pred             hhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence            8899999999999998532 1222233444443    46678999999998876333222222221   1  12467889


Q ss_pred             EEEeccccCC----------CHHHHHHHHHHHHHhhh
Q 029446          155 IQGTCALKGD----------GLYEGLDWLASTLKEMR  181 (193)
Q Consensus       155 ~~~~Sa~~~~----------gi~~~~~~l~~~~~~~~  181 (193)
                      ++..|++.|.          ++.-+|+.|.+++..-.
T Consensus       162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             EEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            9999999874          68889999998886544

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.53  E-value=8.9e-14  Score=103.82  Aligned_cols=149  Identities=19%  Similarity=0.152  Sum_probs=102.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc------------------------------------ccccccceeEEEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL------------------------------------STVPTIGFNVEKVQY   58 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~------------------------------------~~~~t~~~~~~~~~~   58 (193)
                      ...++++-+|...-||||||-+|.-+.-.                                    +.+.|+++.|..+.-
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            45689999999999999999999753110                                    112344444555555


Q ss_pred             cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 029446           59 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--P  136 (193)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~  136 (193)
                      ...+|.+.||||+++|.+.......-||++|+++|+  +..+.+.......+....  --+-+++.+||+||++..+  .
T Consensus        84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             ccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHH
Confidence            788999999999999999988888889999999999  444555544444443321  1234889999999998643  2


Q ss_pred             hHHHhhhCCC--cCCCCceEEEEeccccCCCHH
Q 029446          137 MEVCEGLGLF--DLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus       137 ~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +++.+++...  .+.-....++++||..|+|+-
T Consensus       160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            3333332211  112233479999999999864

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.53  E-value=1.5e-13  Score=103.95  Aligned_cols=136  Identities=26%  Similarity=0.431  Sum_probs=106.1

Q ss_pred             ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCC
Q 029446           46 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPF  115 (193)
Q Consensus        46 ~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~  115 (193)
                      .+|.|+....+..++.++.++|++||-.-+..|.+++.++++++||+++++          ...+.+....+..+++.+.
T Consensus       180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~  259 (354)
T KOG0082|consen  180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW  259 (354)
T ss_pred             cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence            357788888888899999999999999999999999999999999999985          3456677788899999889


Q ss_pred             CCCCeEEEEEeCCCCCCCC-----------------CHhH----HHhhhCCCcC-CCCceEEEEeccccCCCHHHHHHHH
Q 029446          116 MLNSVILVFANKQDMKGAM-----------------TPME----VCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWL  173 (193)
Q Consensus       116 ~~~~p~ivv~nK~Dl~~~~-----------------~~~~----~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l  173 (193)
                      ..+.++|+++||.|+..+.                 ..++    +...+..... +.+.+.+..++|.+-.+|+.+|..+
T Consensus       260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av  339 (354)
T KOG0082|consen  260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV  339 (354)
T ss_pred             cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence            9999999999999997521                 1111    1111111111 2255667778999999999999999


Q ss_pred             HHHHHhhh
Q 029446          174 ASTLKEMR  181 (193)
Q Consensus       174 ~~~~~~~~  181 (193)
                      .+.+....
T Consensus       340 ~d~Ii~~n  347 (354)
T KOG0082|consen  340 TDTIIQNN  347 (354)
T ss_pred             HHHHHHHH
Confidence            99887654

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.52  E-value=3e-13  Score=115.34  Aligned_cols=143  Identities=24%  Similarity=0.195  Sum_probs=92.1

Q ss_pred             CCHHHHHHHHhcCCcccc---ccc--cceeEEEEEE----------------cCEEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446           28 AGKTTILYKLHIGEVLST---VPT--IGFNVEKVQY----------------KNVIFTVWDVGGQEKLRPLWRHYFNNTD   86 (193)
Q Consensus        28 ~GKssli~~l~~~~~~~~---~~t--~~~~~~~~~~----------------~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (193)
                      ++||||+.++.+......   +.|  +|........                ..-.+.+|||||++.|.......+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            459999999998766432   122  2222222211                0113899999999999888888888999


Q ss_pred             EEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------Hh----HHH-----
Q 029446           87 GLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--------------PM----EVC-----  140 (193)
Q Consensus        87 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~~----~~~-----  140 (193)
                      ++++|+|+++   +++++.+.     .+..   .++|+|+|+||+|+.+...              .+    ++.     
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~-----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~  623 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN-----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE  623 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH-----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence            9999999986   34443332     2222   3679999999999864211              01    111     


Q ss_pred             -----hhhCCCc-------CCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          141 -----EGLGLFD-------LKNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       141 -----~~~~~~~-------~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                           ...+...       --...++++++||++|+|++++..+|.....
T Consensus       624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence                 1111110       0134678999999999999999998865443

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.51  E-value=1.1e-12  Score=98.14  Aligned_cols=118  Identities=11%  Similarity=0.126  Sum_probs=73.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc--cc--ccceeEEEEEEcCEEEEEEecCCCCCCHHhH---Hhhhc---
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST--VP--TIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW---RHYFN---   83 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---~~~~~---   83 (193)
                      ....++|+++|.+|+||||++|++++......  ..  +...........+..+.++||||-.+.....   ...++   
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            35789999999999999999999998764321  11  2222223334578899999999966542211   11112   


Q ss_pred             ---CCCEEEEEEECCC--hhhH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           84 ---NTDGLIYVVDSLD--RERI-GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        84 ---~~d~~i~v~d~~~--~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                         ..|+++||.+++.  .... ..+...+.+.....  --.+.|++.|+.|..++
T Consensus       115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCCC
Confidence               5899999966542  2212 22233333333221  12458999999997743

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.50  E-value=1.2e-13  Score=100.00  Aligned_cols=166  Identities=19%  Similarity=0.211  Sum_probs=100.8

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc----ccc----c---------cc-----------------ceeEEEE--
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL----STV----P---------TI-----------------GFNVEKV--   56 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~----~~~----~---------t~-----------------~~~~~~~--   56 (193)
                      ..+++.-|+|+|..|+|||||+++|...-..    .|.    |         .+                 |.+-..+  
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts   94 (366)
T KOG1532|consen   15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS   94 (366)
T ss_pred             cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence            4457788999999999999999999763221    110    0         00                 1110000  


Q ss_pred             -----------------EEcCEEEEEEecCCCCCCH------H-hHHh-hhcCCCEEEEEEECCC---hhhHHHHHHHHH
Q 029446           57 -----------------QYKNVIFTVWDVGGQEKLR------P-LWRH-YFNNTDGLIYVVDSLD---RERIGKAKQEFQ  108 (193)
Q Consensus        57 -----------------~~~~~~~~i~D~~g~~~~~------~-~~~~-~~~~~d~~i~v~d~~~---~~s~~~~~~~~~  108 (193)
                                       .....+..++|||||-+.-      . +... .-....++++++|..+   +.+|-.-.-+..
T Consensus        95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc  174 (366)
T KOG1532|consen   95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC  174 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence                             0014578999999975421      1 1111 1124678889998854   444444333334


Q ss_pred             HHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHH-------hhhCC-------CcCC---------CCceEEEEeccccCCC
Q 029446          109 AIIKDPFMLNSVILVFANKQDMKGAMTPMEVC-------EGLGL-------FDLK---------NRKWHIQGTCALKGDG  165 (193)
Q Consensus       109 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-------~~~~~-------~~~~---------~~~~~~~~~Sa~~~~g  165 (193)
                      .++..   ...|+|++.||+|+.+..-..++.       +.+..       ...+         -.++..+.+|+.+|+|
T Consensus       175 Silyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G  251 (366)
T KOG1532|consen  175 SILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG  251 (366)
T ss_pred             HHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence            44433   679999999999999864322221       11110       0001         1356799999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 029446          166 LYEGLDWLASTLKEMR  181 (193)
Q Consensus       166 i~~~~~~l~~~~~~~~  181 (193)
                      .+++|..+.+.+.+..
T Consensus       252 ~ddf~~av~~~vdEy~  267 (366)
T KOG1532|consen  252 FDDFFTAVDESVDEYE  267 (366)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988776543

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.49  E-value=1.5e-12  Score=95.70  Aligned_cols=167  Identities=20%  Similarity=0.216  Sum_probs=114.5

Q ss_pred             hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-----------ccccccc------------------eeEE
Q 029446            4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-----------STVPTIG------------------FNVE   54 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-----------~~~~t~~------------------~~~~   54 (193)
                      ++.++|+  ...+...|.|.|.||+|||||+..|...-..           ...|-+|                  ..+.
T Consensus        40 ll~~l~p--~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiR  117 (323)
T COG1703          40 LLRALYP--RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIR  117 (323)
T ss_pred             HHHHHhh--cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEe
Confidence            4555655  4557789999999999999999998652110           0111111                  1111


Q ss_pred             EE--------------------EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCC
Q 029446           55 KV--------------------QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP  114 (193)
Q Consensus        55 ~~--------------------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  114 (193)
                      .+                    +..++.+.|++|.|--+...-.   .+-+|.++++.-+.-.+.++.++.-+.++-.  
T Consensus       118 s~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I---~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--  192 (323)
T COG1703         118 SSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDI---ANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--  192 (323)
T ss_pred             ecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHH---hhhcceEEEEecCCCCcHHHHHHhhhhhhhh--
Confidence            11                    1126789999999854444332   2459999999888778888888888888743  


Q ss_pred             CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCc----CCCCceEEEEeccccCCCHHHHHHHHHHHHHhhhccC
Q 029446          115 FMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFD----LKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAG  184 (193)
Q Consensus       115 ~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~  184 (193)
                             |+|+||.|...... ..++...+.+..    ...+..+++.|||.+|+|++++++.+.++.......|
T Consensus       193 -------i~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg  260 (323)
T COG1703         193 -------IIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG  260 (323)
T ss_pred             -------eeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence                   89999999655422 234444444432    2457778999999999999999999999987766654

>cd01882 BMS1 Bms1

Probab=99.49  E-value=3.6e-13  Score=98.00  Aligned_cols=141  Identities=13%  Similarity=0.012  Sum_probs=85.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      .....|+++|.+|+|||||++.+.+..... .....|. +........++.++||||..  .. .....+.+|++++++|
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllviD  112 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLLID  112 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEEEe
Confidence            456789999999999999999998753221 1112221 22233467889999999854  33 3344588999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCCCCCCCC-HhHHHhhhCCCcC--CCCceEEEEeccccCC
Q 029446           94 SLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMKGAMT-PMEVCEGLGLFDL--KNRKWHIQGTCALKGD  164 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~  164 (193)
                      ++.....+.  ..+...+..   .+.|. |+|+||+|+.+... .+++.+.+.....  .-.+.+++.+||++.-
T Consensus       113 a~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         113 ASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             cCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            975443222  222222222   34664 55999999875322 2222222211000  1124589999999874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.49  E-value=1.8e-12  Score=95.29  Aligned_cols=120  Identities=11%  Similarity=0.065  Sum_probs=76.7

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCCHH---h-------H
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP---L-------W   78 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~-------~   78 (193)
                      .....++|+++|.+|+|||||+|++.+......    ..|...........+..+.+|||||-.....   .       .
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            445789999999999999999999999765322    2344444444556788999999999554411   1       1


Q ss_pred             Hhhhc--CCCEEEEEEECCChh-hHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446           79 RHYFN--NTDGLIYVVDSLDRE-RIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM  134 (193)
Q Consensus        79 ~~~~~--~~d~~i~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  134 (193)
                      ..++.  ..+++++|..++... ...  .+.+.+.+......  -.++|+|.||+|...++
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--WRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--HhCEEEEEeCCccCCCC
Confidence            22332  578888887665321 111  23333333322111  14599999999987653

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.49  E-value=1.6e-13  Score=87.68  Aligned_cols=138  Identities=23%  Similarity=0.171  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCC----CCCCHHhHHhhhcCCCEEEEEEEC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGG----QEKLRPLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g----~~~~~~~~~~~~~~~d~~i~v~d~   94 (193)
                      |++++|..|+|||||++++.+..... ..|-.+.+     +  +=...||||    +..+........+++|++++|-.+
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~ly-kKTQAve~-----~--d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a   74 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLY-KKTQAVEF-----N--DKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA   74 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhh-cccceeec-----c--CccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence            68999999999999999998776532 12222211     1  113579999    444444455556789999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446           95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  174 (193)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  174 (193)
                      +++++.-.  ..+..+      -.+|+|=|++|.|+.+..+.+...+.+...  .  --++|.+|+.++.|++++++.|.
T Consensus        75 nd~~s~f~--p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~ea--G--a~~IF~~s~~d~~gv~~l~~~L~  142 (148)
T COG4917          75 NDPESRFP--PGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREA--G--AEPIFETSAVDNQGVEELVDYLA  142 (148)
T ss_pred             cCccccCC--cccccc------cccceEEEEecccccchHhHHHHHHHHHHc--C--CcceEEEeccCcccHHHHHHHHH
Confidence            98764211  111111      245699999999999754544433333211  1  12699999999999999999886


Q ss_pred             HH
Q 029446          175 ST  176 (193)
Q Consensus       175 ~~  176 (193)
                      ..
T Consensus       143 ~~  144 (148)
T COG4917         143 SL  144 (148)
T ss_pred             hh
Confidence            53

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.48  E-value=2.3e-13  Score=98.17  Aligned_cols=162  Identities=13%  Similarity=0.036  Sum_probs=96.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc-----ccccceeEEEEEEcCEEEEEEecCCCCCC----H---HhH----Hhh
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLST-----VPTIGFNVEKVQYKNVIFTVWDVGGQEKL----R---PLW----RHY   81 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~----~~~   81 (193)
                      ++|+++|..|+||||++|.+++......     ..|...........+..+.++||||-...    .   ...    ...
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~   80 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC   80 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence            4899999999999999999998876432     23555556666778999999999992211    1   111    123


Q ss_pred             hcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---C-CcCCCCceEEE
Q 029446           82 FNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---L-FDLKNRKWHIQ  156 (193)
Q Consensus        82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~-~~~~~~~~~~~  156 (193)
                      ..+.++++||+++.+.. .-.....++..+.....+  .-+|||.|..|.......++..+...   + ...+.++-.|.
T Consensus        81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~  158 (212)
T PF04548_consen   81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH  158 (212)
T ss_dssp             TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence            35789999999997321 122233444444442211  34788889888776655333222110   0 11233444566


Q ss_pred             Eeccc------cCCCHHHHHHHHHHHHHhhh
Q 029446          157 GTCAL------KGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       157 ~~Sa~------~~~gi~~~~~~l~~~~~~~~  181 (193)
                      .++.+      ....+.++++.|-+.+.++.
T Consensus       159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  159 VFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            66655      33468889999888887776

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=6.6e-13  Score=99.09  Aligned_cols=160  Identities=20%  Similarity=0.130  Sum_probs=101.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC----ccc------cccccceeEEEEE---------EcCEEEEEEecCCCCCCH
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGE----VLS------TVPTIGFNVEKVQ---------YKNVIFTVWDVGGQEKLR   75 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~----~~~------~~~t~~~~~~~~~---------~~~~~~~i~D~~g~~~~~   75 (193)
                      ..++++.++|+..+|||||.+++..-.    |..      ...|.+.-+..+.         ....++.++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            456999999999999999999997522    111      1222222222221         246789999999998777


Q ss_pred             HhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhh--CCCcC-
Q 029446           76 PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME----VCEGL--GLFDL-  148 (193)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~--~~~~~-  148 (193)
                      +......+-.|..++|+|+.....-+.....+.--+     .-...++|+||+|+.++.....    ....+  .+... 
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-----~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~  159 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-----LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG  159 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-----hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence            766666677899999999976543333333222211     1233789999999887643321    11111  11111 


Q ss_pred             CCCceEEEEeccccC----CCHHHHHHHHHHHHHh
Q 029446          149 KNRKWHIQGTCALKG----DGLYEGLDWLASTLKE  179 (193)
Q Consensus       149 ~~~~~~~~~~Sa~~~----~gi~~~~~~l~~~~~~  179 (193)
                      -..+.|++++||..|    +++.++.+.|...+.+
T Consensus       160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            124479999999999    6666766666666543

>TIGR00101 ureG urease accessory protein UreG

Probab=99.46  E-value=2.2e-12  Score=92.03  Aligned_cols=104  Identities=16%  Similarity=0.138  Sum_probs=64.4

Q ss_pred             CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHh
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPM  137 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~  137 (193)
                      .....+.++.|..-.....+.   -++.++.|+|+.+..+...  .....+ .      ..-++++||+|+.+.  .+.+
T Consensus        91 ~~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi-~------~ad~~~~~k~d~~~~~~~~~~  158 (199)
T TIGR00101        91 PLEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGI-T------RSDLLVINKIDLAPMVGADLG  158 (199)
T ss_pred             CCCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHh-h------hccEEEEEhhhccccccccHH
Confidence            346778888883322222222   2688999999986554321  111111 1      112899999999863  2333


Q ss_pred             HHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      .+.+.....   ..+.+++++||++|+|++++++++.+++.
T Consensus       159 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       159 VMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            333333221   23568999999999999999999997753

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.44  E-value=4.2e-12  Score=98.36  Aligned_cols=81  Identities=23%  Similarity=0.324  Sum_probs=57.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEc-----------------CEEEEEEecCCCCC-
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYK-----------------NVIFTVWDVGGQEK-   73 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~-----------------~~~~~i~D~~g~~~-   73 (193)
                      ...++|+++|.||+|||||+|++++....  .+ ..|...+...+.+.                 +.++.++|+||-.. 
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            57789999999999999999999887643  22 34555565555443                 34699999999321 


Q ss_pred             ------CHHhHHhhhcCCCEEEEEEECC
Q 029446           74 ------LRPLWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        74 ------~~~~~~~~~~~~d~~i~v~d~~   95 (193)
                            ........++++|++++|+|+.
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                  1112234457899999999984

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=2.1e-12  Score=99.26  Aligned_cols=155  Identities=18%  Similarity=0.032  Sum_probs=113.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc------ccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      .|+-.|+-.-|||||+..+.+....      ..+.|.+..+......+..+.+.|.||++++-......+...|.+++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            5778899999999999999986543      2356777777777777789999999999999999888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  172 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  172 (193)
                      |+++.-..+.  .....++..-  .....|+|+||+|..++...++..++..... .-...+++.+|+++|+||+++-+.
T Consensus        82 ~~deGl~~qt--gEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l-~l~~~~i~~~s~~~g~GI~~Lk~~  156 (447)
T COG3276          82 AADEGLMAQT--GEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADL-SLANAKIFKTSAKTGRGIEELKNE  156 (447)
T ss_pred             eCccCcchhh--HHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhc-ccccccccccccccCCCHHHHHHH
Confidence            9964322121  2222222221  2233699999999998754444433332111 133457899999999999999999


Q ss_pred             HHHHHH
Q 029446          173 LASTLK  178 (193)
Q Consensus       173 l~~~~~  178 (193)
                      |.+...
T Consensus       157 l~~L~~  162 (447)
T COG3276         157 LIDLLE  162 (447)
T ss_pred             HHHhhh
Confidence            999883

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.41  E-value=2.6e-12  Score=109.19  Aligned_cols=121  Identities=17%  Similarity=0.178  Sum_probs=84.1

Q ss_pred             hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc------------cc-------ccccceeEEEEEE------
Q 029446            4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL------------ST-------VPTIGFNVEKVQY------   58 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~------------~~-------~~t~~~~~~~~~~------   58 (193)
                      .+.++.+  ...+.-+|+|+|+.++|||||+++|....-.            ++       ..|.......+.+      
T Consensus         8 ~~~~~~~--~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~   85 (843)
T PLN00116          8 ELRRIMD--KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDES   85 (843)
T ss_pred             HHHHHhh--CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccc
Confidence            3444544  3456679999999999999999999753210            10       1122222222222      


Q ss_pred             ----------cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446           59 ----------KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ  128 (193)
Q Consensus        59 ----------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  128 (193)
                                ....+.++||||+.+|.......++.+|++++|+|+...-..+.. ..|..+..    .++|+|+++||+
T Consensus        86 ~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~----~~~p~i~~iNK~  160 (843)
T PLN00116         86 LKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKM  160 (843)
T ss_pred             ccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH----CCCCEEEEEECC
Confidence                      257789999999999999998889999999999999865433322 23334333    578999999999


Q ss_pred             CCC
Q 029446          129 DMK  131 (193)
Q Consensus       129 Dl~  131 (193)
                      |..
T Consensus       161 D~~  163 (843)
T PLN00116        161 DRC  163 (843)
T ss_pred             ccc
Confidence            987

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.41  E-value=2.6e-12  Score=95.21  Aligned_cols=162  Identities=14%  Similarity=0.128  Sum_probs=110.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCC----CEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNT----DGL   88 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~----d~~   88 (193)
                      .-+|+|+|+.++||||||.++.+..........+.-|..++.    +..++.+|-..|...+..+....+...    -.+
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlv  131 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLV  131 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEE
Confidence            358999999999999999999988854444444444444433    357899999999888877777666542    467


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCC-----------------------------------------------------
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPF-----------------------------------------------------  115 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------------------------------------------------  115 (193)
                      |++.|+++++++-+..+-|..++.+..                                                     
T Consensus       132 iltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llP  211 (473)
T KOG3905|consen  132 ILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLP  211 (473)
T ss_pred             EEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccc
Confidence            889999998655554443333322100                                                     


Q ss_pred             --------CCCCeEEEEEeCCCCCCC----CCH--------hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHH
Q 029446          116 --------MLNSVILVFANKQDMKGA----MTP--------MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  175 (193)
Q Consensus       116 --------~~~~p~ivv~nK~Dl~~~----~~~--------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  175 (193)
                              .-++|++||+||+|...-    .+.        +...+.++    -.++...+.+|++...|++-+..+|.+
T Consensus       212 L~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFC----Lr~GaaLiyTSvKE~KNidllyKYivh  287 (473)
T KOG3905|consen  212 LGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFC----LRYGAALIYTSVKETKNIDLLYKYIVH  287 (473)
T ss_pred             cCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHH----HHcCceeEEeecccccchHHHHHHHHH
Confidence                    115789999999998431    111        11122222    246778999999999999999999999


Q ss_pred             HHHhhhc
Q 029446          176 TLKEMRA  182 (193)
Q Consensus       176 ~~~~~~~  182 (193)
                      ..+....
T Consensus       288 r~yG~~f  294 (473)
T KOG3905|consen  288 RSYGFPF  294 (473)
T ss_pred             HhcCccc
Confidence            8875543

>PRK12289 GTPase RsgA; Reviewed

Probab=99.41  E-value=3.3e-13  Score=103.65  Aligned_cols=105  Identities=20%  Similarity=0.139  Sum_probs=77.4

Q ss_pred             HHhhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEE
Q 029446           78 WRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQ  156 (193)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (193)
                      .+..+.++|.+++|+|+.++. ....+..++..+.    ..++|+|+|+||+|+.+......+.+.+     +..+++++
T Consensus        83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~  153 (352)
T PRK12289         83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPL  153 (352)
T ss_pred             echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEE
Confidence            344578999999999998765 3434556665542    2578999999999997643333333322     24456899


Q ss_pred             EeccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446          157 GTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  193 (193)
Q Consensus       157 ~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~  193 (193)
                      .+||+++.|++++++.+...+  ..-.|.+++|||||
T Consensus       154 ~iSA~tg~GI~eL~~~L~~ki--~v~iG~SgVGKSSL  188 (352)
T PRK12289        154 FISVETGIGLEALLEQLRNKI--TVVAGPSGVGKSSL  188 (352)
T ss_pred             EEEcCCCCCHHHHhhhhccce--EEEEeCCCCCHHHH
Confidence            999999999999999998765  45569999999985

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.41  E-value=1.3e-11  Score=93.61  Aligned_cols=107  Identities=15%  Similarity=0.056  Sum_probs=67.7

Q ss_pred             CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV  139 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  139 (193)
                      +..+.+.||+|.....   ......+|.++++.+....+.+...   ...+      ..+|.++|+||+|+.........
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~~---~~~l------~~~~~ivv~NK~Dl~~~~~~~~~  193 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQGI---KAGL------MEIADIYVVNKADGEGATNVTIA  193 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHHH---HHHH------hhhccEEEEEcccccchhHHHHH
Confidence            6789999999954222   2345678898888655433332222   2222      34667999999998865432221


Q ss_pred             Hhh----hCC--CcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          140 CEG----LGL--FDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       140 ~~~----~~~--~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      ...    +..  .....+..+++++||++++|+++++++|.+...
T Consensus       194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            111    111  111123446999999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd01855 YqeH YqeH

Probab=99.39  E-value=4.8e-13  Score=95.04  Aligned_cols=113  Identities=19%  Similarity=0.110  Sum_probs=74.5

Q ss_pred             CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhh---CCCcCC
Q 029446           74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME-VCEGL---GLFDLK  149 (193)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~---~~~~~~  149 (193)
                      ++..+..+++++|++++|+|++++..     .|...+...  ..+.|+++|+||+|+.+.....+ .....   ......
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence            57778889999999999999987542     111111111  14689999999999975433221 21111   000001


Q ss_pred             CCceEEEEeccccCCCHHHHHHHHHHHHHhhh---ccCCCCCCcCCC
Q 029446          150 NRKWHIQGTCALKGDGLYEGLDWLASTLKEMR---AAGYSSVGTSSF  193 (193)
Q Consensus       150 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~---~~~~~~~~~~~~  193 (193)
                      ....+++++||++++|++++++.|.+.+....   --|.+++|||+|
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStl  143 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGATNVGKSTL  143 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHH
Confidence            11125899999999999999999999874322   239999999975

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=1.5e-12  Score=102.81  Aligned_cols=154  Identities=20%  Similarity=0.206  Sum_probs=101.7

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcC--------------------Ccc-cc-----------ccccceeEE--EEEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIG--------------------EVL-ST-----------VPTIGFNVE--KVQY   58 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~--------------------~~~-~~-----------~~t~~~~~~--~~~~   58 (193)
                      .....+.++++|+.++|||||+.++.-.                    ..+ .|           ...+.++..  .+.-
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes  252 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES  252 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence            3346689999999999999999888641                    100 00           011112222  2333


Q ss_pred             cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHH------HHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           59 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK------AKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                      ....++|.|+||+..|..........+|++++|+|++.. .|+.      .......+++..  --.-+||++||+|+.+
T Consensus       253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVS  329 (603)
T ss_pred             CceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccC
Confidence            578899999999999999988888899999999999842 1222      112333333321  1345899999999998


Q ss_pred             CCC--HhHHHhhhCC-----CcCCCCceEEEEeccccCCCHHHH
Q 029446          133 AMT--PMEVCEGLGL-----FDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus       133 ~~~--~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      ..+  .+++...+..     .-+....+.|++||+.+|+|+-..
T Consensus       330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            643  3344433332     223455678999999999997543

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.38  E-value=2e-12  Score=85.30  Aligned_cols=113  Identities=17%  Similarity=0.109  Sum_probs=79.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc-cc-cccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS-TV-PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~-~~-~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (193)
                      +|++++|..|+|||+|+.++....+.. +. +|.+                       +......+.+.++.+++|++.+
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~   57 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD   57 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence            589999999999999999998777753 22 3433                       3333445567899999999999


Q ss_pred             ChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           96 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      ...+++.+  |...+.... ..+.|.++++||.|+.++.   ++.+...        .+++++|++++.|+.
T Consensus        58 ~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~---~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       58 DRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEER---QVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             CHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhC---cCCHHHH--------HHHHHHhCCCcchhh
Confidence            99888765  555544332 3568899999999974432   1111111        147789999999884

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PTZ00416 elongation factor 2; Provisional

Probab=99.37  E-value=1.1e-11  Score=105.26  Aligned_cols=112  Identities=18%  Similarity=0.167  Sum_probs=78.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCc--c----------cc-------ccccceeEEEEEEc----------CEEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEV--L----------ST-------VPTIGFNVEKVQYK----------NVIFTV   65 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~--~----------~~-------~~t~~~~~~~~~~~----------~~~~~i   65 (193)
                      ++.-+|+++|+.++|||||+++|....-  .          ++       ..|.......+.+.          +..+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            4455999999999999999999986321  1          00       11111111222332          567999


Q ss_pred             EecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           66 WDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        66 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      +||||+.+|.......++.+|++++|+|+.+.-.-+.- ..+..+..    .+.|+|+++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH----cCCCEEEEEEChhhh
Confidence            99999999988888889999999999999865332222 33344433    468999999999987

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.37  E-value=3e-12  Score=94.80  Aligned_cols=153  Identities=19%  Similarity=0.211  Sum_probs=106.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc---ccccccceeEEEEEE-cCEEEEEEecCCC---------CCCHHhHHh
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL---STVPTIGFNVEKVQY-KNVIFTVWDVGGQ---------EKLRPLWRH   80 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~D~~g~---------~~~~~~~~~   80 (193)
                      .....-|.|+|..|+|||||++.|++....   ....|.+++....+. .+..+.+.||.|-         ..|++....
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee  254 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE  254 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence            345678999999999999999999965433   235777777766655 5678899999992         234444444


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe----EEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEE
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV----ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQ  156 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (193)
                      . ..+|.++-|.|+++|. .+.....+...++....+..|    +|=|-||+|..+.....|    ..         ..+
T Consensus       255 V-aeadlllHvvDiShP~-ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E----~n---------~~v  319 (410)
T KOG0410|consen  255 V-AEADLLLHVVDISHPN-AEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----KN---------LDV  319 (410)
T ss_pred             H-hhcceEEEEeecCCcc-HHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc----cC---------Ccc
Confidence            3 5799999999999886 455555555555543333233    466778888665422211    11         157


Q ss_pred             EeccccCCCHHHHHHHHHHHHHhhh
Q 029446          157 GTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       157 ~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      .+||.+|+|++++.+.+-..+....
T Consensus       320 ~isaltgdgl~el~~a~~~kv~~~t  344 (410)
T KOG0410|consen  320 GISALTGDGLEELLKAEETKVASET  344 (410)
T ss_pred             ccccccCccHHHHHHHHHHHhhhhh
Confidence            8999999999999999988876543

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=4.5e-12  Score=102.61  Aligned_cols=159  Identities=25%  Similarity=0.218  Sum_probs=107.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc--cc---ccccceeEEEEE----------------EcCEEEEEEecCCCCCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--ST---VPTIGFNVEKVQ----------------YKNVIFTVWDVGGQEKL   74 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~---~~t~~~~~~~~~----------------~~~~~~~i~D~~g~~~~   74 (193)
                      +.+-+||+|+..+|||-|+..+.+....  +.   .-.+|.++....                ++-=-+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            5678999999999999999998875432  11   122333333221                11124789999999999


Q ss_pred             HHhHHhhhcCCCEEEEEEECCCh---hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCC-----C----------
Q 029446           75 RPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-GAM-----T----------  135 (193)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~-----~----------  135 (193)
                      ..++......||.+|+|+|+.+.   ++++.+    ..+ +.   ++.|+||.+||+|.. ...     .          
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lL-R~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k  625 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLL-RM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK  625 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhHHH----HHH-Hh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence            99999999999999999999753   333332    222 22   689999999999954 210     0          


Q ss_pred             --HhHHHh-------hh---CCC---cCCC----CceEEEEeccccCCCHHHHHHHHHHHHHhhhc
Q 029446          136 --PMEVCE-------GL---GLF---DLKN----RKWHIQGTCALKGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       136 --~~~~~~-------~~---~~~---~~~~----~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~  182 (193)
                        ..++..       ++   ++.   ..++    .-+.++++||.+|+||.+|+.+|++.......
T Consensus       626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~  691 (1064)
T KOG1144|consen  626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV  691 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence              011111       11   111   0111    23568999999999999999999998776553

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.36  E-value=1.2e-12  Score=100.45  Aligned_cols=159  Identities=15%  Similarity=0.101  Sum_probs=81.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-----cc---ccccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHh-----
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-----ST---VPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRH-----   80 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-----~~---~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~-----   80 (193)
                      ...++|+|+|.+|+|||||||.|.+-...     .+   ..|...  ..+.+ +.-.+.+||.||...-......     
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~--~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~  110 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP--TPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV  110 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS---EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC--eeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence            47899999999999999999999863222     11   122222  22323 2235999999994322222222     


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC--CC-------CC----HhHHHhhhC--C
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK--GA-------MT----PMEVCEGLG--L  145 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~-------~~----~~~~~~~~~--~  145 (193)
                      -+...|.+|++.+-    .|.....++...++.   .++|+++|-||+|..  .+       -.    .+++.+...  +
T Consensus       111 ~~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L  183 (376)
T PF05049_consen  111 KFYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL  183 (376)
T ss_dssp             TGGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred             cccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence            34578987776653    344544444444444   578999999999951  10       01    112211110  1


Q ss_pred             CcCCCCceEEEEeccccC--CCHHHHHHHHHHHHHhhhc
Q 029446          146 FDLKNRKWHIQGTCALKG--DGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~--~gi~~~~~~l~~~~~~~~~  182 (193)
                      ....-...++|.+|+.+-  .+...+.+.|.+.+...+.
T Consensus       184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred             HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence            111123346999998864  4588888888888776654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.35  E-value=1.2e-11  Score=88.91  Aligned_cols=152  Identities=14%  Similarity=0.124  Sum_probs=87.0

Q ss_pred             hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc--c-----ccc----------ccceeEEEEE----------------
Q 029446           11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL--S-----TVP----------TIGFNVEKVQ----------------   57 (193)
Q Consensus        11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~--~-----~~~----------t~~~~~~~~~----------------   57 (193)
                      .........|+++|..|+|||||++++......  .     ...          ..+.....+.                
T Consensus        16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l   95 (207)
T TIGR00073        16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHAL   95 (207)
T ss_pred             HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHH
Confidence            345567889999999999999999999753110  0     000          0011111100                


Q ss_pred             ----EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           58 ----YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        58 ----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                          ..+..+.+.++.|.-....   .+.-..+..+.++|+.+....  ... ....      ...|.++++||+|+.+.
T Consensus        96 ~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~--~~~-~~~~------~~~a~iiv~NK~Dl~~~  163 (207)
T TIGR00073        96 EDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDK--PLK-YPGM------FKEADLIVINKADLAEA  163 (207)
T ss_pred             HHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccch--hhh-hHhH------HhhCCEEEEEHHHcccc
Confidence                0134677788877211111   111234555677777654321  111 1111      24567999999999764


Q ss_pred             C--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446          134 M--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus       134 ~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      .  ...+..+.+...   ....+++++||++++|++++++++.++.
T Consensus       164 ~~~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       164 VGFDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             chhhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            2  222333322211   2345899999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=2.5e-12  Score=95.15  Aligned_cols=162  Identities=15%  Similarity=0.033  Sum_probs=103.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCc---c-cc--ccccceeEE----------------EEE----------EcCEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEV---L-ST--VPTIGFNVE----------------KVQ----------YKNVI   62 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~---~-~~--~~t~~~~~~----------------~~~----------~~~~~   62 (193)
                      +..++|..+|+..-|||||.+.+++--.   + +.  ..|...-|.                ...          ---..
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            5689999999999999999999987211   1 00  000000000                000          01247


Q ss_pred             EEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hH
Q 029446           63 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----ME  138 (193)
Q Consensus        63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~  138 (193)
                      +.+.|.||++-.-....+...--|++++|++++.++.--...+ ....+...  .-+.+|++-||+|++..+..    ++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~E-Hl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~q  164 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTRE-HLMALEII--GIKNIIIVQNKIDLVSRERALENYEQ  164 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHH-HHHHHhhh--ccceEEEEecccceecHHHHHHHHHH
Confidence            8999999998766655555556799999999997543111111 11111211  23458999999999986432    33


Q ss_pred             HHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          139 VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      +.+...--.  ..+.|++++||..+.|++.++++|.+.+..-.
T Consensus       165 Ik~FvkGt~--Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~  205 (415)
T COG5257         165 IKEFVKGTV--AENAPIIPISAQHKANIDALIEAIEKYIPTPE  205 (415)
T ss_pred             HHHHhcccc--cCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence            333222111  24568999999999999999999999986443

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.34  E-value=1.6e-11  Score=103.27  Aligned_cols=113  Identities=19%  Similarity=0.149  Sum_probs=77.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC--cc----------cc-------ccccceeEEEEEE----cCEEEEEEecCCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGE--VL----------ST-------VPTIGFNVEKVQY----KNVIFTVWDVGGQ   71 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~--~~----------~~-------~~t~~~~~~~~~~----~~~~~~i~D~~g~   71 (193)
                      .+.-+|+++|+.++|||||+.+|+...  ..          ++       ..|+......+.+    .+..+.++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            355689999999999999999997421  11          10       1122222222322    4688999999999


Q ss_pred             CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                      .+|.......++.+|++++|+|+.....-+. ...+.....    .+.|.|+++||+|...
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~----~~~~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALR----ERVKPVLFINKVDRLI  153 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHH----cCCCeEEEEECchhhc
Confidence            9998888888999999999999976532222 223333322    2467899999999763

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.33  E-value=2.6e-11  Score=84.32  Aligned_cols=64  Identities=19%  Similarity=0.234  Sum_probs=43.5

Q ss_pred             EEEEEEecCCCC----CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446           61 VIFTVWDVGGQE----KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ  128 (193)
Q Consensus        61 ~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  128 (193)
                      ..+.++||||-.    .....+..+++.+|++++|.+++...+-.... .+.+....   .....|+|.||.
T Consensus       101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~---~~~~~i~V~nk~  168 (168)
T PF00350_consen  101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDP---DKSRTIFVLNKA  168 (168)
T ss_dssp             CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTT---TCSSEEEEEE-G
T ss_pred             cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcC---CCCeEEEEEcCC
Confidence            368999999942    23366778889999999999998865544443 33333333   233489999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd01859 MJ1464 MJ1464

Probab=99.33  E-value=5e-12  Score=86.99  Aligned_cols=110  Identities=19%  Similarity=0.182  Sum_probs=73.5

Q ss_pred             CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce
Q 029446           74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW  153 (193)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  153 (193)
                      ++...+..++++|++++|+|++++.....  ..+......   .++|+++|+||+|+.+.....+.. ..    .+..+.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~----~~~~~~   71 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWK-SI----KESEGI   71 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHH-HH----HHhCCC
Confidence            45667788889999999999987543222  112222221   468999999999986532222211 11    112345


Q ss_pred             EEEEeccccCCCHHHHHHHHHHHHHhhh------ccCCCCCCcCCC
Q 029446          154 HIQGTCALKGDGLYEGLDWLASTLKEMR------AAGYSSVGTSSF  193 (193)
Q Consensus       154 ~~~~~Sa~~~~gi~~~~~~l~~~~~~~~------~~~~~~~~~~~~  193 (193)
                      +++.+||+++.|++++++.+.+.+....      .-|.+++|||++
T Consensus        72 ~~~~iSa~~~~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl  117 (156)
T cd01859          72 PVVYVSAKERLGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSI  117 (156)
T ss_pred             cEEEEEccccccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHH
Confidence            7899999999999999999998775421      227888888864

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=99.32  E-value=4.1e-12  Score=97.61  Aligned_cols=104  Identities=24%  Similarity=0.207  Sum_probs=78.0

Q ss_pred             hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446           82 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      ..|+|.+++|++.+...++..+..|+... .   ..++|+++|+||+|+.+........+...  ..+..+++++++||+
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~---~~~i~~VIVlNK~DL~~~~~~~~~~~~~~--~y~~~g~~v~~vSA~  191 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVAC-E---TLGIEPLIVLNKIDLLDDEGRAFVNEQLD--IYRNIGYRVLMVSSH  191 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHH-H---hcCCCEEEEEECccCCCcHHHHHHHHHHH--HHHhCCCeEEEEeCC
Confidence            46799999999998888888888887644 2   25689999999999976532212211111  113345689999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446          162 KGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  193 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~  193 (193)
                      +++|++++++.|...+  ...-|.+++|||||
T Consensus       192 tg~GideL~~~L~~ki--~~~vG~sgVGKSTL  221 (347)
T PRK12288        192 TGEGLEELEAALTGRI--SIFVGQSGVGKSSL  221 (347)
T ss_pred             CCcCHHHHHHHHhhCC--EEEECCCCCCHHHH
Confidence            9999999999998765  34569999999985

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.31  E-value=3.4e-12  Score=90.25  Aligned_cols=145  Identities=19%  Similarity=0.276  Sum_probs=94.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC----ccccccccceeEEEEEE-cCEEEEEEecCCCCCCHH-----hHHhhhcCCC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGE----VLSTVPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRP-----LWRHYFNNTD   86 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~-----~~~~~~~~~d   86 (193)
                      .=||+++|..|+||||+=--++.+-    ....++|+++....+.+ +..-+.+||.+||+.+-.     .....+++.+
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~   83 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ   83 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence            3489999999999999643333221    22335666777666666 458899999999985422     3456678999


Q ss_pred             EEEEEEECCChh---hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcCCCCceEEEEecc
Q 029446           87 GLIYVVDSLDRE---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---LFDLKNRKWHIQGTCA  160 (193)
Q Consensus        87 ~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa  160 (193)
                      +++++||+...+   .+......++.+++.  .+...+.+...|+|+...+..+++.+...   ....+.....++++|.
T Consensus        84 vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   84 VLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            999999998543   233333444555443  25677889999999998765544322211   1111344567888876


Q ss_pred             ccC
Q 029446          161 LKG  163 (193)
Q Consensus       161 ~~~  163 (193)
                      -+.
T Consensus       162 wDe  164 (295)
T KOG3886|consen  162 WDE  164 (295)
T ss_pred             hhH
Confidence            643

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=2.9e-11  Score=92.87  Aligned_cols=110  Identities=20%  Similarity=0.284  Sum_probs=80.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc--CCcc----------c-------------cccccceeEEEEEEcCEEEEEEecCCC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI--GEVL----------S-------------TVPTIGFNVEKVQYKNVIFTVWDVGGQ   71 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~--~~~~----------~-------------~~~t~~~~~~~~~~~~~~~~i~D~~g~   71 (193)
                      +=.++|+-+|.+|||||..+|.-  +-+.          .             .+..+...+..+.+.+..+++.||||+
T Consensus        12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH   91 (528)
T COG4108          12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH   91 (528)
T ss_pred             hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence            33568899999999999998863  1110          0             011222334566778999999999999


Q ss_pred             CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      ++|..-+-.-+..+|.++.|+|+...  ++....-+.++.+.   +++|++=++||.|..
T Consensus        92 eDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~  146 (528)
T COG4108          92 EDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDRE  146 (528)
T ss_pred             cccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccc
Confidence            99877776667889999999999654  34444445555543   799999999999976

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.30  E-value=4.7e-11  Score=91.63  Aligned_cols=78  Identities=22%  Similarity=0.267  Sum_probs=55.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcC-----------------EEEEEEecCCCCC----
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKN-----------------VIFTVWDVGGQEK----   73 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~----   73 (193)
                      ++|+++|.||+|||||+|++++....  .+ ..|...+...+...+                 .++.+.|+||-..    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            78999999999999999999987743  22 345555555544422                 3699999999322    


Q ss_pred             CHH---hHHhhhcCCCEEEEEEECC
Q 029446           74 LRP---LWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        74 ~~~---~~~~~~~~~d~~i~v~d~~   95 (193)
                      ...   .....++++|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence            112   2233457899999999984

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.28  E-value=3e-11  Score=90.39  Aligned_cols=115  Identities=14%  Similarity=0.230  Sum_probs=66.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------ccccceeEEEEEE----cCEEEEEEecCCCCCCHH----
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST-----------VPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRP----   76 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~----   76 (193)
                      -.|+|+|+|..|+|||||||.|++......           ..+..+.......    -.+.+.++||||-.....    
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            368999999999999999999998764321           1122222222222    256899999999221100    


Q ss_pred             ----------hHHhhh-------------cCCCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           77 ----------LWRHYF-------------NNTDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        77 ----------~~~~~~-------------~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                                ....++             ...|+++|+++++.. ++..+. ..+..+ .    ...++|.|+.|+|...
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRL-S----KRVNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHH-T----TTSEEEEEESTGGGS-
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHh-c----ccccEEeEEecccccC
Confidence                      000000             147999999998742 233333 344444 3    3578999999999877


Q ss_pred             CCCH
Q 029446          133 AMTP  136 (193)
Q Consensus       133 ~~~~  136 (193)
                      ..+.
T Consensus       157 ~~el  160 (281)
T PF00735_consen  157 PEEL  160 (281)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.27  E-value=5.3e-11  Score=94.45  Aligned_cols=160  Identities=16%  Similarity=0.154  Sum_probs=105.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE------cCEEEEEEecCCCCCCHHhHHhhhcC----CC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY------KNVIFTVWDVGGQEKLRPLWRHYFNN----TD   86 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~------~~~~~~i~D~~g~~~~~~~~~~~~~~----~d   86 (193)
                      .-.|+|+|..++|||||+.+|.+..-  ..++.+..|..++.      ...++.+|-..|...+..+....+..    --
T Consensus        25 ~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   25 EKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             CceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            45899999999999999999976543  33455555544433      23578999999987787777666553    36


Q ss_pred             EEEEEEECCChhhHHHHHH-H----------------------------HHHHHc---CC---------------C----
Q 029446           87 GLIYVVDSLDRERIGKAKQ-E----------------------------FQAIIK---DP---------------F----  115 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~-~----------------------------~~~~~~---~~---------------~----  115 (193)
                      ++|+|+|.+.|+.+-+... |                            |+....   ..               .    
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~  182 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV  182 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence            7889999998754432111 1                            111100   00               0    


Q ss_pred             -----------CCCCeEEEEEeCCCCCCCC----C--------HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446          116 -----------MLNSVILVFANKQDMKGAM----T--------PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  172 (193)
Q Consensus       116 -----------~~~~p~ivv~nK~Dl~~~~----~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  172 (193)
                                 .-++|++||++|+|.....    .        ..+..+.++    -.++...+.||++...+++.+...
T Consensus       183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~c----L~yGAsL~yts~~~~~n~~~L~~y  258 (472)
T PF05783_consen  183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFC----LKYGASLIYTSVKEEKNLDLLYKY  258 (472)
T ss_pred             cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHH----HhcCCeEEEeeccccccHHHHHHH
Confidence                       0147999999999975421    0        011122222    256778999999999999999999


Q ss_pred             HHHHHHhhhc
Q 029446          173 LASTLKEMRA  182 (193)
Q Consensus       173 l~~~~~~~~~  182 (193)
                      |.+.++..-.
T Consensus       259 i~h~l~~~~f  268 (472)
T PF05783_consen  259 ILHRLYGFPF  268 (472)
T ss_pred             HHHHhccCCC
Confidence            8888865443

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK00098 GTPase RsgA; Reviewed

Probab=99.27  E-value=3.3e-12  Score=96.66  Aligned_cols=102  Identities=20%  Similarity=0.195  Sum_probs=71.7

Q ss_pred             hhcCCCEEEEEEECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEe
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGT  158 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  158 (193)
                      ...++|++++|+|+.++...... ..|+..+ ..   .++|+++|+||+|+.+... ..+..+.     .+..+++++++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~~g~~v~~v  147 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLAL-----YRAIGYDVLEL  147 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHH-----HHHCCCeEEEE
Confidence            35899999999999887665554 4444443 32   5789999999999963311 1112221     12345689999


Q ss_pred             ccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446          159 CALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  193 (193)
Q Consensus       159 Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~  193 (193)
                      ||++++|++++++.+...+.  .--|.+++|||||
T Consensus       148 SA~~g~gi~~L~~~l~gk~~--~~~G~sgvGKStl  180 (298)
T PRK00098        148 SAKEGEGLDELKPLLAGKVT--VLAGQSGVGKSTL  180 (298)
T ss_pred             eCCCCccHHHHHhhccCceE--EEECCCCCCHHHH
Confidence            99999999999988865432  2349999999975

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.26  E-value=6.3e-12  Score=94.64  Aligned_cols=104  Identities=18%  Similarity=0.108  Sum_probs=76.0

Q ss_pred             HhhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEE
Q 029446           79 RHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQG  157 (193)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (193)
                      ...+.++|.+++|+|+.++. ++..+..|+..+..    .++|+++|+||+|+.+......... .    ....+.+++.
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~-~----~~~~g~~v~~  143 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELV-E----ALALGYPVLA  143 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHH-H----HHhCCCeEEE
Confidence            44578999999999999887 77777777765533    4689999999999976521111111 1    1234568999


Q ss_pred             eccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446          158 TCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  193 (193)
Q Consensus       158 ~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~  193 (193)
                      +||+++.|+++++..|....  ..--|.+++|||+|
T Consensus       144 vSA~~g~gi~~L~~~L~~k~--~~~~G~sg~GKSTl  177 (287)
T cd01854         144 VSAKTGEGLDELREYLKGKT--SVLVGQSGVGKSTL  177 (287)
T ss_pred             EECCCCccHHHHHhhhccce--EEEECCCCCCHHHH
Confidence            99999999999998887522  23349999999974

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.26  E-value=2.9e-10  Score=87.75  Aligned_cols=139  Identities=15%  Similarity=0.122  Sum_probs=83.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC----Ccc---------------ccc---cccceeE---EEEEE-----cCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG----EVL---------------STV---PTIGFNV---EKVQY-----KNVIFT   64 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~----~~~---------------~~~---~t~~~~~---~~~~~-----~~~~~~   64 (193)
                      ...+-|+|+|+.++|||||||+|.+.    ...               ..+   .|+...+   ..+..     -..++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            46788999999999999999999986    222               112   3444444   22222     247899


Q ss_pred             EEecCC--------CCCCHH---------------------hHHhhhc-CCCEEEEEE-ECC----ChhhHHHHH-HHHH
Q 029446           65 VWDVGG--------QEKLRP---------------------LWRHYFN-NTDGLIYVV-DSL----DRERIGKAK-QEFQ  108 (193)
Q Consensus        65 i~D~~g--------~~~~~~---------------------~~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~-~~~~  108 (193)
                      ++||+|        +.+...                     =+...++ +++..++|. |.+    .++.+.+.. .++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            999999        111111                     0233445 899999998 774    122333333 3444


Q ss_pred             HHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446          109 AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALK  162 (193)
Q Consensus       109 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (193)
                      ++ +.   .++|+|+++||.|-..+. ..++.+.+.    ...+++++.+|+..
T Consensus       175 eL-k~---~~kPfiivlN~~dp~~~e-t~~l~~~l~----eky~vpvl~v~c~~  219 (492)
T TIGR02836       175 EL-KE---LNKPFIILLNSTHPYHPE-TEALRQELE----EKYDVPVLAMDVES  219 (492)
T ss_pred             HH-Hh---cCCCEEEEEECcCCCCch-hHHHHHHHH----HHhCCceEEEEHHH
Confidence            44 33   589999999999944322 233332221    23345667777653

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.25  E-value=4.4e-12  Score=94.26  Aligned_cols=55  Identities=22%  Similarity=0.268  Sum_probs=39.3

Q ss_pred             CeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHH
Q 029446          119 SVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  176 (193)
Q Consensus       119 ~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  176 (193)
                      .+-++|+||+|+.+..  +.++..+.+..   .....+++++||++|+|++++.+||..+
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4459999999998642  23333333321   1235689999999999999999999874

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=8.8e-11  Score=83.86  Aligned_cols=163  Identities=18%  Similarity=0.221  Sum_probs=106.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-cc---ccccceeEEEEEEcCEEEEEEecCCCCCCHHh---HHhhhcCCCEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-ST---VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL---WRHYFNNTDGLI   89 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~---~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~d~~i   89 (193)
                      ..+|+++|...+||||+.+-.+.+..+ ++   .+|..++...+...-+.+.+||.|||..+-.-   ....++++.+++
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            367999999999999987776655544 22   34444444445445688999999998765332   355678999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHc-CCCCCCCeEEEEEeCCCCCCCCC--------HhHHHhhhCCCcCCCCceEEEEecc
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAMT--------PMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      +|+|+.+. -.+.+......+.+ ....+++.+=+.+.|.|...++-        .++..+++.-.-+....+.++.+|-
T Consensus       107 fvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI  185 (347)
T KOG3887|consen  107 FVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI  185 (347)
T ss_pred             EEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence            99999643 12333333333322 12336778889999999776421        1222333333333556677888887


Q ss_pred             ccCCCHHHHHHHHHHHHHhhh
Q 029446          161 LKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      .+ ..+-+.|..+++++.++.
T Consensus       186 yD-HSIfEAFSkvVQkLipqL  205 (347)
T KOG3887|consen  186 YD-HSIFEAFSKVVQKLIPQL  205 (347)
T ss_pred             cc-hHHHHHHHHHHHHHhhhc
Confidence            64 568899999988887654

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.24  E-value=3.1e-10  Score=90.00  Aligned_cols=154  Identities=17%  Similarity=0.149  Sum_probs=106.7

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc----eeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG----FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTD   86 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~----~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (193)
                      ...++.+++.|+|+.++|||.+++++.++.+.+ +..+..    ++...+.....-+.+-|.+-. ........- ..||
T Consensus       420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD  497 (625)
T KOG1707|consen  420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD  497 (625)
T ss_pred             cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence            344577999999999999999999999977663 222222    222233334555667776654 222222222 6799


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446           87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-----MTPMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      ++.++||.+++.+|+.....+......   ...|+++|++|+|+.+.     .++.+..+.+++.       +...+|++
T Consensus       498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~~S~~  567 (625)
T KOG1707|consen  498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIHISSK  567 (625)
T ss_pred             eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCeeeccC
Confidence            999999999999999987766665433   68999999999998764     2446777777765       45667776


Q ss_pred             cCCCHHHHHHHHHHHHH
Q 029446          162 KGDGLYEGLDWLASTLK  178 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~  178 (193)
                      .... .++|..|..+..
T Consensus       568 ~~~s-~~lf~kL~~~A~  583 (625)
T KOG1707|consen  568 TLSS-NELFIKLATMAQ  583 (625)
T ss_pred             CCCC-chHHHHHHHhhh
Confidence            4222 688888877664

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.23  E-value=5.6e-12  Score=97.73  Aligned_cols=115  Identities=23%  Similarity=0.224  Sum_probs=75.7

Q ss_pred             CCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCC
Q 029446           71 QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLK  149 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~  149 (193)
                      +++|+.....+.+.++++++|+|+.+...     .|...+.+..  .+.|+++|+||+|+.+... .+++.+.+. ..++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k  121 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK  121 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence            56788888888899999999999976532     2222222211  3678999999999976432 222221110 0011


Q ss_pred             CCce---EEEEeccccCCCHHHHHHHHHHHHHhh--hccCCCCCCcCCC
Q 029446          150 NRKW---HIQGTCALKGDGLYEGLDWLASTLKEM--RAAGYSSVGTSSF  193 (193)
Q Consensus       150 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~~~~~--~~~~~~~~~~~~~  193 (193)
                      ..++   .++.+||+++.|++++++.|.+.....  .--|.+++|||||
T Consensus       122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl  170 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL  170 (360)
T ss_pred             HcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence            2222   489999999999999999997653221  1239999999975

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.23  E-value=2.5e-10  Score=82.06  Aligned_cols=156  Identities=18%  Similarity=0.144  Sum_probs=102.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcCEEEEEEecCCCCC------CH-HhHHhhhcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKNVIFTVWDVGGQEK------LR-PLWRHYFNN   84 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~------~~-~~~~~~~~~   84 (193)
                      +...+|+++|-|.+|||||+..++.-...  .| ..|.......+.+++..+++.|.||--+      -+ .......+-
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence            45679999999999999999999875543  33 3566666677889999999999999222      11 122334467


Q ss_pred             CCEEEEEEECCChhhHHHHHH-HH--------------------------------------------------------
Q 029446           85 TDGLIYVVDSLDRERIGKAKQ-EF--------------------------------------------------------  107 (193)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~-~~--------------------------------------------------------  107 (193)
                      +|.++.|+|++..+.-.++.. .+                                                        
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~  219 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF  219 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence            999999999986322111110 00                                                        


Q ss_pred             ---------HHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          108 ---------QAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       108 ---------~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                               .+++.. ...-++++.|-||+|...-++...+.+.-          .-+-+||..+.|++.+++.|.+.+.
T Consensus       220 ReD~t~DdfIDvi~g-nr~Y~~ClYvYnKID~vs~eevdrlAr~P----------nsvViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  220 REDCTVDDFIDVIEG-NRVYIKCLYVYNKIDQVSIEEVDRLARQP----------NSVVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             ecCCChHHHHHHHhc-cceEEEEEEEeeccceecHHHHHHHhcCC----------CcEEEEeccccCHHHHHHHHHHHhc
Confidence                     011100 01125788999999977654444443322          2455788888999999999999886


Q ss_pred             hhh
Q 029446          179 EMR  181 (193)
Q Consensus       179 ~~~  181 (193)
                      -.+
T Consensus       289 L~r  291 (364)
T KOG1486|consen  289 LVR  291 (364)
T ss_pred             eEE
Confidence            444

>cd01858 NGP_1 NGP-1

Probab=99.21  E-value=4.7e-11  Score=82.22  Aligned_cols=106  Identities=18%  Similarity=0.116  Sum_probs=69.4

Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      .++++|++++|+|+.++..-  ....+...+... ..+.|+|+|+||+|+.+.....+....+..    ......+.+||
T Consensus         5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~----~~~~~~~~iSa   77 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSK----EYPTIAFHASI   77 (157)
T ss_pred             hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhc----CCcEEEEEeec
Confidence            35889999999999876321  112233333221 245899999999999765333333333321    12223688999


Q ss_pred             ccCCCHHHHHHHHHHHHHhh----h----ccCCCCCCcCCC
Q 029446          161 LKGDGLYEGLDWLASTLKEM----R----AAGYSSVGTSSF  193 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~----~----~~~~~~~~~~~~  193 (193)
                      +.+.|++++.+.+.+.+...    .    --|.+++|||||
T Consensus        78 ~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStl  118 (157)
T cd01858          78 NNPFGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSI  118 (157)
T ss_pred             cccccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHH
Confidence            99999999999998765311    1    239999999975

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=4.8e-10  Score=92.74  Aligned_cols=114  Identities=19%  Similarity=0.186  Sum_probs=84.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC--ccc---c----------------ccccceeEEEEEEcC-EEEEEEecCCCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGE--VLS---T----------------VPTIGFNVEKVQYKN-VIFTVWDVGGQE   72 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~--~~~---~----------------~~t~~~~~~~~~~~~-~~~~i~D~~g~~   72 (193)
                      .+.=+|.|+|+-.+|||||..++.-..  .+.   .                ..|+.....++.++. ..++++|||||.
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV   87 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV   87 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence            456689999999999999999986421  111   0                123333344667774 999999999999


Q ss_pred             CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      +|.......++-+|++++|+|+...-..+.- ..|....+    .++|.|+++||+|....
T Consensus        88 DFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~----~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADK----YGVPRILFVNKMDRLGA  143 (697)
T ss_pred             ccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhh----cCCCeEEEEECcccccc
Confidence            9999999999999999999999754322222 33444433    57999999999998764

>smart00053 DYNc Dynamin, GTPase

Probab=99.16  E-value=1.2e-09  Score=79.83  Aligned_cols=69  Identities=12%  Similarity=0.100  Sum_probs=44.0

Q ss_pred             EEEEEEecCCCCC-------------CHHhHHhhhcC-CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 029446           61 VIFTVWDVGGQEK-------------LRPLWRHYFNN-TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN  126 (193)
Q Consensus        61 ~~~~i~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n  126 (193)
                      ..+.++|+||-..             ...+...|+++ .+.+++|+|++....-+........+.    ..+.|.|+|+|
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~~~rti~ViT  200 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQGERTIGVIT  200 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----HcCCcEEEEEE
Confidence            5799999999542             12345567774 468889998864322122222233332    14688999999


Q ss_pred             CCCCCCC
Q 029446          127 KQDMKGA  133 (193)
Q Consensus       127 K~Dl~~~  133 (193)
                      |.|..+.
T Consensus       201 K~D~~~~  207 (240)
T smart00053      201 KLDLMDE  207 (240)
T ss_pred             CCCCCCc
Confidence            9998865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=7.4e-10  Score=83.73  Aligned_cols=123  Identities=18%  Similarity=0.193  Sum_probs=85.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc--c--ccccceeEEEEEEc-------------------------------
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS--T--VPTIGFNVEKVQYK-------------------------------   59 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~--~--~~t~~~~~~~~~~~-------------------------------   59 (193)
                      ....-|+++|+-..||||||+.|+...++.  .  .||+...+..+...                               
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            356789999999999999999999988862  2  34444333222221                               


Q ss_pred             ----------CEEEEEEecCCC-----------CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCC
Q 029446           60 ----------NVIFTVWDVGGQ-----------EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN  118 (193)
Q Consensus        60 ----------~~~~~i~D~~g~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  118 (193)
                                --+++++||||-           -.|......+...||.++++||+...+--++....+..+..    +.
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~E  211 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HE  211 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----Cc
Confidence                      128999999992           23455667888899999999999876555555555555533    23


Q ss_pred             CeEEEEEeCCCCCCCCCHhHHHhhhC
Q 029446          119 SVILVFANKQDMKGAMTPMEVCEGLG  144 (193)
Q Consensus       119 ~p~ivv~nK~Dl~~~~~~~~~~~~~~  144 (193)
                      -.+-||+||.|.++.   +++.+.++
T Consensus       212 dkiRVVLNKADqVdt---qqLmRVyG  234 (532)
T KOG1954|consen  212 DKIRVVLNKADQVDT---QQLMRVYG  234 (532)
T ss_pred             ceeEEEeccccccCH---HHHHHHHH
Confidence            346799999998876   55544443

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=1.7e-09  Score=82.31  Aligned_cols=80  Identities=24%  Similarity=0.303  Sum_probs=55.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEE------------------cCEEEEEEecCC-----
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQY------------------KNVIFTVWDVGG-----   70 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~------------------~~~~~~i~D~~g-----   70 (193)
                      .++++|+|.||+|||||+|.++.....  .| ..|+..+...+..                  -...+.++|.+|     
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999987743  22 2455555443222                  256789999988     


Q ss_pred             --CCCCHHhHHhhhcCCCEEEEEEECCC
Q 029446           71 --QEKLRPLWRHYFNNTDGLIYVVDSLD   96 (193)
Q Consensus        71 --~~~~~~~~~~~~~~~d~~i~v~d~~~   96 (193)
                        .+..--..-..++.+|+++.|+|+..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence              11122223444688999999999974

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.14  E-value=1e-09  Score=89.20  Aligned_cols=116  Identities=14%  Similarity=0.141  Sum_probs=71.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCCH-------Hh---HHhh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKLR-------PL---WRHY   81 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~~~~   81 (193)
                      ..++|+++|.+|+||||++|++++......    ..|...........+..+.++||||-....       ..   ...+
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~  196 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF  196 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence            457899999999999999999999764321    223333222233467899999999944321       11   1123


Q ss_pred             hc--CCCEEEEEEECCChhhH-H--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           82 FN--NTDGLIYVVDSLDRERI-G--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        82 ~~--~~d~~i~v~d~~~~~s~-~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      +.  .+|++++|..++..... +  .+...+..+.....+  .-.|||.|+.|..++
T Consensus       197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw--k~tIVVFThgD~lpp  251 (763)
T TIGR00993       197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW--FNAIVTLTHAASAPP  251 (763)
T ss_pred             HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH--cCEEEEEeCCccCCC
Confidence            33  48999999987532221 1  233334444432222  237999999998863

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01856 YlqF YlqF

Probab=99.13  E-value=6.6e-11  Score=82.66  Aligned_cols=109  Identities=18%  Similarity=0.132  Sum_probs=70.5

Q ss_pred             CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCc
Q 029446           73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK  152 (193)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  152 (193)
                      +........++++|++++|+|++++..-...  .+....     .+.|.++|+||+|+.++....+..+.+.     ...
T Consensus         8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~   75 (171)
T cd01856           8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKG   75 (171)
T ss_pred             HHHHHHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcC
Confidence            3344456667899999999999865432211  122211     3578999999999965422222222211     122


Q ss_pred             eEEEEeccccCCCHHHHHHHHHHHHHh---------------hhccCCCCCCcCCC
Q 029446          153 WHIQGTCALKGDGLYEGLDWLASTLKE---------------MRAAGYSSVGTSSF  193 (193)
Q Consensus       153 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~---------------~~~~~~~~~~~~~~  193 (193)
                      ..++.+||++++|++++.+.+.+.+..               -.--|.+++|||++
T Consensus        76 ~~vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstl  131 (171)
T cd01856          76 EKVLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTL  131 (171)
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHH
Confidence            368999999999999999999887531               11237788988864

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.13  E-value=1.5e-10  Score=79.62  Aligned_cols=99  Identities=19%  Similarity=0.201  Sum_probs=64.6

Q ss_pred             CEEEEEEECCChhhHHHHHHHHH-HHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCC
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQ-AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGD  164 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (193)
                      |++++|+|+.++.+...  .++. .....   .++|+|+|+||+|+.+.....++...+.    +.....++.+||+++.
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~   71 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQ   71 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCc
Confidence            78999999987755432  2333 22222   5789999999999976432222222221    1123468999999999


Q ss_pred             CHHHHHHHHHHHHHhh----------------hccCCCCCCcCCC
Q 029446          165 GLYEGLDWLASTLKEM----------------RAAGYSSVGTSSF  193 (193)
Q Consensus       165 gi~~~~~~l~~~~~~~----------------~~~~~~~~~~~~~  193 (193)
                      |++++.+.+.+...+.                .--|.+++|||+|
T Consensus        72 gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstl  116 (155)
T cd01849          72 GIEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSV  116 (155)
T ss_pred             ChhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHH
Confidence            9999999887643211                1138899999874

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.12  E-value=9.4e-11  Score=87.93  Aligned_cols=108  Identities=20%  Similarity=0.167  Sum_probs=73.7

Q ss_pred             CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce
Q 029446           74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW  153 (193)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  153 (193)
                      ........++.+|++++|+|+..+.+...  ..+...+     .++|+|+|+||+|+.+.....++.+.+.     ..+.
T Consensus        11 ~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~~~   78 (276)
T TIGR03596        11 ARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFE-----EKGI   78 (276)
T ss_pred             HHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHH-----HcCC
Confidence            34445667789999999999976644222  2233333     2578999999999975422223222221     1234


Q ss_pred             EEEEeccccCCCHHHHHHHHHHHHHhhhc----------------cCCCCCCcCCC
Q 029446          154 HIQGTCALKGDGLYEGLDWLASTLKEMRA----------------AGYSSVGTSSF  193 (193)
Q Consensus       154 ~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~----------------~~~~~~~~~~~  193 (193)
                      +++.+||+++.|++++.+.+.+.+.+...                -|.+++||||+
T Consensus        79 ~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSsl  134 (276)
T TIGR03596        79 KALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTL  134 (276)
T ss_pred             eEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHH
Confidence            68999999999999999999887765431                17899999975

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=99.12  E-value=5e-11  Score=84.66  Aligned_cols=135  Identities=24%  Similarity=0.406  Sum_probs=98.1

Q ss_pred             cccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCC
Q 029446           47 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAIIKDPFM  116 (193)
Q Consensus        47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~  116 (193)
                      ||+|+.....+...+-+.+.|.+|+..-+..|.+++++...+++++.++          +....++....+..++..++.
T Consensus       185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF  264 (359)
T KOG0085|consen  185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF  264 (359)
T ss_pred             CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence            4455555555666788999999999999999999999988888877664          456777788888999999999


Q ss_pred             CCCeEEEEEeCCCCCCCCC-----------------HhHHHhhhC------CCcCCCCceEEEEeccccCCCHHHHHHHH
Q 029446          117 LNSVILVFANKQDMKGAMT-----------------PMEVCEGLG------LFDLKNRKWHIQGTCALKGDGLYEGLDWL  173 (193)
Q Consensus       117 ~~~p~ivv~nK~Dl~~~~~-----------------~~~~~~~~~------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  173 (193)
                      .+.++|+.+||.|+.++..                 -.+..+++.      ...-....+.-..++|.+-+||.-+|..+
T Consensus       265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV  344 (359)
T KOG0085|consen  265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV  344 (359)
T ss_pred             cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence            9999999999999875311                 011111111      11112222334457888899999999999


Q ss_pred             HHHHHhhh
Q 029446          174 ASTLKEMR  181 (193)
Q Consensus       174 ~~~~~~~~  181 (193)
                      .+.+.+..
T Consensus       345 kDtiLq~~  352 (359)
T KOG0085|consen  345 KDTILQLN  352 (359)
T ss_pred             HHHHHHhh
Confidence            99887654

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.10  E-value=1.8e-10  Score=79.92  Aligned_cols=145  Identities=19%  Similarity=0.102  Sum_probs=81.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccccc------------------cceeEEEE----------------------
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPT------------------IGFNVEKV----------------------   56 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t------------------~~~~~~~~----------------------   56 (193)
                      -+.|.|.|++|||||+|+.+++..-..++...                  .+.....+                      
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            38999999999999999998876332211000                  11000000                      


Q ss_pred             EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHc-CCCCCCCeEEEEEeCCCCCCCCC
Q 029446           57 QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAMT  135 (193)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~  135 (193)
                      .+....+.+.+..| .-.-  .-++.-..+.-|+|+|.+..+..-         .+ .+... ..=++|+||.|+.+...
T Consensus        93 ~~~~~Dll~iEs~G-NL~~--~~sp~L~d~~~v~VidvteGe~~P---------~K~gP~i~-~aDllVInK~DLa~~v~  159 (202)
T COG0378          93 DFPDLDLLFIESVG-NLVC--PFSPDLGDHLRVVVIDVTEGEDIP---------RKGGPGIF-KADLLVINKTDLAPYVG  159 (202)
T ss_pred             cCCcCCEEEEecCc-ceec--ccCcchhhceEEEEEECCCCCCCc---------ccCCCcee-EeeEEEEehHHhHHHhC
Confidence            00124566666666 1100  001101233778888887543100         01 11100 13489999999998654


Q ss_pred             H--hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446          136 P--MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus       136 ~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      .  +...+....   -+.+.+++++|+++|+|+++++.|+....
T Consensus       160 ~dlevm~~da~~---~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         160 ADLEVMARDAKE---VNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             ccHHHHHHHHHH---hCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            4  333332221   13455899999999999999999987654

>cd01900 YchF YchF subfamily

Probab=99.09  E-value=4.4e-10  Score=83.58  Aligned_cols=76  Identities=22%  Similarity=0.250  Sum_probs=53.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCcc--c-cccccceeEEEEEEcC-----------------EEEEEEecCCCCC----CH
Q 029446           20 VVMLGLDAAGKTTILYKLHIGEVL--S-TVPTIGFNVEKVQYKN-----------------VIFTVWDVGGQEK----LR   75 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~----~~   75 (193)
                      |+++|.||+|||||+|++++....  . ...|.......+.+.+                 .++.++|+||-..    ..
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999997763  1 2355566655555432                 2599999999322    11


Q ss_pred             H---hHHhhhcCCCEEEEEEECC
Q 029446           76 P---LWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        76 ~---~~~~~~~~~d~~i~v~d~~   95 (193)
                      .   .....++++|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            2   2233457899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.06  E-value=7.3e-10  Score=77.24  Aligned_cols=55  Identities=18%  Similarity=0.319  Sum_probs=41.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE--EEEEcCEEEEEEecCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE--KVQYKNVIFTVWDVGG   70 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~g   70 (193)
                      ...++++++|.||+|||||+|++.+.......+..|.+..  .+.. ...+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-~~~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-DKKVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence            3458999999999999999999999876554444454443  2222 34689999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=2.7e-09  Score=78.48  Aligned_cols=140  Identities=24%  Similarity=0.192  Sum_probs=91.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC-------Ccccc------------ccccceeEEEEEEcCEEEEEEecCCCCCCH
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG-------EVLST------------VPTIGFNVEKVQYKNVIFTVWDVGGQEKLR   75 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~-------~~~~~------------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (193)
                      ...++|..+|+.+-|||||...++.-       ....|            ..|+......+.-....+.-.|+||+.+|-
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv   89 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence            35789999999999999998887641       11111            122333333444467889999999999999


Q ss_pred             HhHHhhhcCCCEEEEEEECCCh---hhHHHHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCCCCHhH-----HHhhhCCC
Q 029446           76 PLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNS-VILVFANKQDMKGAMTPME-----VCEGLGLF  146 (193)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~~~~-----~~~~~~~~  146 (193)
                      ++......+.|+.|+|+++++.   ++-+.+.     +.++   -+. -+++++||+|+.+..+..+     +.+-+..-
T Consensus        90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----larq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y  161 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDGPMPQTREHIL-----LARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY  161 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence            9888887889999999999863   3322221     1111   234 4679999999998543322     22223222


Q ss_pred             cCCCCceEEEEecccc
Q 029446          147 DLKNRKWHIQGTCALK  162 (193)
Q Consensus       147 ~~~~~~~~~~~~Sa~~  162 (193)
                      .+..-+.|++.-||..
T Consensus       162 ~f~gd~~Pii~gSal~  177 (394)
T COG0050         162 GFPGDDTPIIRGSALK  177 (394)
T ss_pred             CCCCCCcceeechhhh
Confidence            2234456788777764

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.03  E-value=3.7e-09  Score=80.41  Aligned_cols=162  Identities=19%  Similarity=0.087  Sum_probs=103.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-----------------cccccceeEEEEEE------------------
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-----------------TVPTIGFNVEKVQY------------------   58 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-----------------~~~t~~~~~~~~~~------------------   58 (193)
                      ..-.+.|.+.|+.+.|||||+-.|..+...+                 ..-+..+++..+-+                  
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            3467899999999999999988887654321                 11122233322111                  


Q ss_pred             -----cCEEEEEEecCCCCCCHHhH--HhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           59 -----KNVIFTVWDVGGQEKLRPLW--RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        59 -----~~~~~~i~D~~g~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                           .+.-+.+.|+.|++.|....  ...-+..|..++++.+++.-+  .......-+.-   .-..|+|+++||+|+.
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~---a~~lPviVvvTK~D~~  268 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIAL---AMELPVIVVVTKIDMV  268 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhh---hhcCCEEEEEEecccC
Confidence                 14578899999999997764  333457999999999987543  22232333222   2478999999999999


Q ss_pred             CCCCHhHHH----hhhC--------------------CCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          132 GAMTPMEVC----EGLG--------------------LFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       132 ~~~~~~~~~----~~~~--------------------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      +++..+.+.    ..+.                    ....+..-+|+|.+|+.+|+|++-+. .+...++.++
T Consensus       269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~-e~f~~Lp~rr  341 (527)
T COG5258         269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLD-EFFLLLPKRR  341 (527)
T ss_pred             cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHH-HHHHhCCccc
Confidence            865433222    1111                    11122335799999999999987654 4445555443

>PRK13796 GTPase YqeH; Provisional

Probab=99.03  E-value=2.4e-10  Score=88.84  Aligned_cols=112  Identities=21%  Similarity=0.225  Sum_probs=68.7

Q ss_pred             CCHHhHHhhhcCCC-EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCC
Q 029446           73 KLRPLWRHYFNNTD-GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKN  150 (193)
Q Consensus        73 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~  150 (193)
                      .|....... ...+ .+++|+|+.+...  .....+....     .+.|+++|+||+|+.+... .+++.+.+. ...+.
T Consensus        58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~-~~~k~  128 (365)
T PRK13796         58 DFLKLLNGI-GDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLR-QEAKE  128 (365)
T ss_pred             HHHHHHHhh-cccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHH-HHHHh
Confidence            455554444 4445 8999999976431  1122222222     2678999999999976422 222211100 01112


Q ss_pred             Cce---EEEEeccccCCCHHHHHHHHHHHHHhhh--ccCCCCCCcCCC
Q 029446          151 RKW---HIQGTCALKGDGLYEGLDWLASTLKEMR--AAGYSSVGTSSF  193 (193)
Q Consensus       151 ~~~---~~~~~Sa~~~~gi~~~~~~l~~~~~~~~--~~~~~~~~~~~~  193 (193)
                      .++   .++.+||+++.|++++++.|.+......  --|.+++|||+|
T Consensus       129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL  176 (365)
T PRK13796        129 LGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL  176 (365)
T ss_pred             cCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence            222   5899999999999999999987643222  239999999975

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.02  E-value=4.1e-10  Score=76.14  Aligned_cols=94  Identities=19%  Similarity=0.217  Sum_probs=59.8

Q ss_pred             HhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEe
Q 029446           79 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT  158 (193)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (193)
                      ...++.+|++++|+|+.++.+...  ..+...+.... .++|+++|+||+|+.++....++.+.+     +..+.+++.+
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~-----~~~~~~ii~i   77 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYF-----KKEGIVVVFF   77 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHH-----HhcCCeEEEE
Confidence            345689999999999987754331  12222222211 478999999999997543322232322     2333579999


Q ss_pred             ccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446          159 CALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  193 (193)
Q Consensus       159 Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~  193 (193)
                      ||+++.+             .-.--|.+++|||++
T Consensus        78 Sa~~~~~-------------~~~~~G~~~vGKstl   99 (141)
T cd01857          78 SALKENA-------------TIGLVGYPNVGKSSL   99 (141)
T ss_pred             EecCCCc-------------EEEEECCCCCCHHHH
Confidence            9999886             122348888888764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.00  E-value=3.9e-09  Score=79.87  Aligned_cols=119  Identities=16%  Similarity=0.237  Sum_probs=74.8

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-----------cccccceeEEEEEE----cCEEEEEEecCCCCCC---
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-----------TVPTIGFNVEKVQY----KNVIFTVWDVGGQEKL---   74 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-----------~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~---   74 (193)
                      .....|+|.++|+.|+|||||+|.|++.....           ..+++.+.......    -.+.+.+.||||--++   
T Consensus        19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN   98 (373)
T COG5019          19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN   98 (373)
T ss_pred             hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence            34688999999999999999999999874331           12333344433322    2578999999992111   


Q ss_pred             -----------HHhHHhhh--------------cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 029446           75 -----------RPLWRHYF--------------NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD  129 (193)
Q Consensus        75 -----------~~~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  129 (193)
                                 ......++              ...++++|.+.++. .++..+.-..++-+.    ....+|.|+.|+|
T Consensus        99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls----~~vNlIPVI~KaD  173 (373)
T COG5019          99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS----KRVNLIPVIAKAD  173 (373)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh----cccCeeeeeeccc
Confidence                       01111111              14799999999873 334444433333333    2455899999999


Q ss_pred             CCCCCCH
Q 029446          130 MKGAMTP  136 (193)
Q Consensus       130 l~~~~~~  136 (193)
                      ....++.
T Consensus       174 ~lT~~El  180 (373)
T COG5019         174 TLTDDEL  180 (373)
T ss_pred             cCCHHHH
Confidence            8876443

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=2.5e-09  Score=86.22  Aligned_cols=112  Identities=19%  Similarity=0.194  Sum_probs=81.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccccc----------------ccceeEE---------EEEEcCEEEEEEecC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVP----------------TIGFNVE---------KVQYKNVIFTVWDVG   69 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~----------------t~~~~~~---------~~~~~~~~~~i~D~~   69 (193)
                      ....+|+++|+-+.|||+|+..|.....++..+                ..|+.+.         ....+..-+++.|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            456799999999999999999998755432111                1112211         112245678999999


Q ss_pred             CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      |+..|-......++.+|++++++|+.+.-.+.. ...+...++    .+.|+.+|+||+|..
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq----~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ----NRLPIVVVINKVDRL  262 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh----ccCcEEEEEehhHHH
Confidence            999999988888999999999999976544332 234444443    578999999999964

>cd01858 NGP_1 NGP-1

Probab=98.99  E-value=2.4e-09  Score=73.70  Aligned_cols=56  Identities=20%  Similarity=0.213  Sum_probs=40.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE-cCEEEEEEecCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY-KNVIFTVWDVGG   70 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g   70 (193)
                      .....|+++|.+|+|||||+|++.+.......++.|.+.....+ ....+.+.||||
T Consensus       100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG  156 (157)
T cd01858         100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG  156 (157)
T ss_pred             ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence            35688999999999999999999987765555555544332222 123588999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=3.9e-09  Score=80.33  Aligned_cols=120  Identities=14%  Similarity=0.205  Sum_probs=75.3

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc----------ccccceeEEEEEE--c--CEEEEEEecCCCCC----
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST----------VPTIGFNVEKVQY--K--NVIFTVWDVGGQEK----   73 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----------~~t~~~~~~~~~~--~--~~~~~i~D~~g~~~----   73 (193)
                      ..+.-.|.+.++|+.|.|||||||+|+...+...          ..|+.+.......  +  .+.+++.||||-.+    
T Consensus        16 ~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn   95 (366)
T KOG2655|consen   16 VKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN   95 (366)
T ss_pred             HhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc
Confidence            3445679999999999999999999998754421          1233444444333  2  46788999999111    


Q ss_pred             ---C-------HHhHH-----------hhhc--CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446           74 ---L-------RPLWR-----------HYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  130 (193)
Q Consensus        74 ---~-------~~~~~-----------~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  130 (193)
                         +       .....           ..+.  ..++++|.+.++. ..+..+.-..++-+.    ....+|.|+.|.|.
T Consensus        96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~  170 (366)
T KOG2655|consen   96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLS----KKVNLIPVIAKADT  170 (366)
T ss_pred             cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHh----ccccccceeecccc
Confidence               0       00111           1122  5899999999863 334444433333333    35678999999998


Q ss_pred             CCCCCH
Q 029446          131 KGAMTP  136 (193)
Q Consensus       131 ~~~~~~  136 (193)
                      ....+.
T Consensus       171 lT~~El  176 (366)
T KOG2655|consen  171 LTKDEL  176 (366)
T ss_pred             CCHHHH
Confidence            875433

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.97  E-value=3e-09  Score=76.89  Aligned_cols=155  Identities=19%  Similarity=0.072  Sum_probs=98.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc--ccc-cccceeEEEEEEcCEEEEEEecCCCCCC-------HHhHHhhhcCCC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL--STV-PTIGFNVEKVQYKNVIFTVWDVGGQEKL-------RPLWRHYFNNTD   86 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~--~~~-~t~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~d   86 (193)
                      .-+|.++|-|.+||||++..+.+....  .+. .|.......+.++.-++++.|.||--+-       .+......+-|+
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn  138 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN  138 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence            358999999999999999999876543  333 3333333456678889999999982221       112233446799


Q ss_pred             EEEEEEECCChhhHHHHH-----------------------------------------HHHHHHHcCC-----------
Q 029446           87 GLIYVVDSLDRERIGKAK-----------------------------------------QEFQAIIKDP-----------  114 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~-----------------------------------------~~~~~~~~~~-----------  114 (193)
                      .+++|+|+..|-+...+.                                         ..+.+....+           
T Consensus       139 li~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~  218 (358)
T KOG1487|consen  139 LIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATA  218 (358)
T ss_pred             EEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcch
Confidence            999999997632222211                                         1111111000           


Q ss_pred             -------CC--CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          115 -------FM--LNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       115 -------~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                             +.  .-+|.|.+.||+|-..-   +|+.-....       ....++||.+++|++++++.+.+.+.-.+
T Consensus       219 DdLIdvVegnr~yVp~iyvLNkIdsISi---EELdii~~i-------phavpISA~~~wn~d~lL~~mweyL~Lvr  284 (358)
T KOG1487|consen  219 DDLIDVVEGNRIYVPCIYVLNKIDSISI---EELDIIYTI-------PHAVPISAHTGWNFDKLLEKMWEYLKLVR  284 (358)
T ss_pred             hhhhhhhccCceeeeeeeeecccceeee---eccceeeec-------cceeecccccccchHHHHHHHhhcchheE
Confidence                   01  14688999999995543   222221211       14899999999999999999998875443

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.95  E-value=8.1e-10  Score=83.32  Aligned_cols=107  Identities=23%  Similarity=0.193  Sum_probs=72.6

Q ss_pred             HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceE
Q 029446           75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWH  154 (193)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  154 (193)
                      .......++.+|++++|+|+..+.+...  ..+.+..     .++|+++|+||+|+.+....+++.+.+.     ..+.+
T Consensus        15 ~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~   82 (287)
T PRK09563         15 RREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIK   82 (287)
T ss_pred             HHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCe
Confidence            3345566789999999999976644222  2333333     2578999999999975422222322221     11346


Q ss_pred             EEEeccccCCCHHHHHHHHHHHHHhhh----------------ccCCCCCCcCCC
Q 029446          155 IQGTCALKGDGLYEGLDWLASTLKEMR----------------AAGYSSVGTSSF  193 (193)
Q Consensus       155 ~~~~Sa~~~~gi~~~~~~l~~~~~~~~----------------~~~~~~~~~~~~  193 (193)
                      ++.+||+++.|++++.+.+.+.+.+..                --|.+++||||+
T Consensus        83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsl  137 (287)
T PRK09563         83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTL  137 (287)
T ss_pred             EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHH
Confidence            899999999999999999888775432                128899999874

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.92  E-value=2.9e-09  Score=83.77  Aligned_cols=131  Identities=23%  Similarity=0.397  Sum_probs=97.4

Q ss_pred             cccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCC
Q 029446           47 PTIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPF  115 (193)
Q Consensus        47 ~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~  115 (193)
                      +|.|+....+.+ ....+.++|++|+...++.|..++.+++++|||+++++          ...+.+....+..+.....
T Consensus       221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~  300 (389)
T PF00503_consen  221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW  300 (389)
T ss_dssp             --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred             CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence            467888888888 99999999999999999999999999999999999863          2557888889999999888


Q ss_pred             CCCCeEEEEEeCCCCCCC--------------------CCHhHH----HhhhCCCcCCC---CceEEEEeccccCCCHHH
Q 029446          116 MLNSVILVFANKQDMKGA--------------------MTPMEV----CEGLGLFDLKN---RKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       116 ~~~~p~ivv~nK~Dl~~~--------------------~~~~~~----~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~  168 (193)
                      ..+.|+||++||.|+..+                    ...+..    ...+.......   +.+.+..++|.+-+++..
T Consensus       301 ~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~  380 (389)
T PF00503_consen  301 FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRK  380 (389)
T ss_dssp             GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHH
T ss_pred             cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHH
Confidence            889999999999997531                    111111    11111111111   556677888888888888


Q ss_pred             HHHHHHHHH
Q 029446          169 GLDWLASTL  177 (193)
Q Consensus       169 ~~~~l~~~~  177 (193)
                      +|+.+.+.+
T Consensus       381 v~~~v~~~i  389 (389)
T PF00503_consen  381 VFNAVKDII  389 (389)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHhcCcC
Confidence            888887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=7.3e-09  Score=78.62  Aligned_cols=155  Identities=23%  Similarity=0.215  Sum_probs=99.5

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc------------------------ccccccceeEE--EEEE--------
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL------------------------STVPTIGFNVE--KVQY--------   58 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~------------------------~~~~t~~~~~~--~~~~--------   58 (193)
                      +.--.++++++|...+|||||+--|.++...                        ....+.|++..  .+++        
T Consensus       163 QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEE  242 (591)
T KOG1143|consen  163 QQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEE  242 (591)
T ss_pred             ccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHH
Confidence            3346789999999999999998888764321                        01122232211  1122        


Q ss_pred             ----cCEEEEEEecCCCCCCHHhHHhhhcC--CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           59 ----KNVIFTVWDVGGQEKLRPLWRHYFNN--TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        59 ----~~~~~~i~D~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                          ...-+.+.|.+|+.+|.......+..  .|.++++++++....+..-  ...-++..   .++|++++++|+|+.+
T Consensus       243 i~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr--EHLgl~~A---L~iPfFvlvtK~Dl~~  317 (591)
T KOG1143|consen  243 IVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR--EHLGLIAA---LNIPFFVLVTKMDLVD  317 (591)
T ss_pred             HHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH--HHHHHHHH---hCCCeEEEEEeecccc
Confidence                13468899999999998887766664  6899999999876544332  12222221   5799999999999997


Q ss_pred             CCCHhHHHhhhC-------------------------CCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446          133 AMTPMEVCEGLG-------------------------LFDLKNRKWHIQGTCALKGDGLYEGLDW  172 (193)
Q Consensus       133 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  172 (193)
                      ....+...+++.                         .........|+|.+|+.+|+|++-+-..
T Consensus       318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f  382 (591)
T KOG1143|consen  318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF  382 (591)
T ss_pred             chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence            643322222221                         0011234578999999999998765443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.89  E-value=3.6e-09  Score=83.59  Aligned_cols=155  Identities=13%  Similarity=0.248  Sum_probs=110.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE---EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      .++|+.|+|..++|||+|+.++..+.+.....+.+..+.   .+......+.+.|.+|.....     +....|++|+||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~aQ-----ft~wvdavIfvf  103 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDAQ-----FCQWVDAVVFVF  103 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchhh-----hhhhccceEEEE
Confidence            568999999999999999999999888754444443332   233355677888888844322     446799999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-------CHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-------TPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      ...+.++|+.+......+........+|.++++++.=.....       ...+....+       .-..+|++++..|.+
T Consensus       104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~-------krcsy~et~atyGln  176 (749)
T KOG0705|consen  104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQM-------KRCSYYETCATYGLN  176 (749)
T ss_pred             EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhc-------Cccceeecchhhhhh
Confidence            999999999998777776654444668888888875332211       111222222       223699999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 029446          166 LYEGLDWLASTLKEMRA  182 (193)
Q Consensus       166 i~~~~~~l~~~~~~~~~  182 (193)
                      +..+|+.+..++...+.
T Consensus       177 v~rvf~~~~~k~i~~~~  193 (749)
T KOG0705|consen  177 VERVFQEVAQKIVQLRK  193 (749)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999887765544

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.87  E-value=7.8e-09  Score=69.88  Aligned_cols=52  Identities=19%  Similarity=0.280  Sum_probs=37.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccce--eEEEEEEcCEEEEEEecCCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGF--NVEKVQYKNVIFTVWDVGGQ   71 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~g~   71 (193)
                      +++++|.+|+|||||+|++.+........+.+.  ....+.... .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence            899999999999999999998876543333332  223333333 6899999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=7.4e-08  Score=78.13  Aligned_cols=145  Identities=18%  Similarity=0.231  Sum_probs=85.7

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccee--------------------------------------
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS--TVPTIGFN--------------------------------------   52 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~--~~~t~~~~--------------------------------------   52 (193)
                      ..+...||++.|..++||||++|++.-....+  ..+++.+.                                      
T Consensus       105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~  184 (749)
T KOG0448|consen  105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK  184 (749)
T ss_pred             HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence            34788999999999999999999997643221  11111100                                      


Q ss_pred             ------EEEEEEc-------CEEEEEEecCC---CCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCC
Q 029446           53 ------VEKVQYK-------NVIFTVWDVGG---QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFM  116 (193)
Q Consensus        53 ------~~~~~~~-------~~~~~i~D~~g---~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  116 (193)
                            ...+-+.       .-.+.+.|.||   ......-...+..++|++|||.++.+.-+..+. +++.....    
T Consensus       185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~----  259 (749)
T KOG0448|consen  185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE----  259 (749)
T ss_pred             ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc----
Confidence                  0011110       12688999999   444555567777899999999999665433332 33333322    


Q ss_pred             CCCeEEEEEeCCCCCCCCC-H-hHHHh---hhCCCcCCCCceEEEEecccc
Q 029446          117 LNSVILVFANKQDMKGAMT-P-MEVCE---GLGLFDLKNRKWHIQGTCALK  162 (193)
Q Consensus       117 ~~~p~ivv~nK~Dl~~~~~-~-~~~~~---~~~~~~~~~~~~~~~~~Sa~~  162 (193)
                      .+..+.|+.||.|...... . +.+.+   ++.....+.-.-.+|.+||+.
T Consensus       260 ~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  260 EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            2344667778889876422 1 22222   333333333344588899664

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.84  E-value=5.8e-09  Score=76.13  Aligned_cols=158  Identities=13%  Similarity=0.061  Sum_probs=96.5

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccc-cccceeEEEEEE-cCEEEEEEecCC----------CCCCHHhHH
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STV-PTIGFNVEKVQY-KNVIFTVWDVGG----------QEKLRPLWR   79 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~-~t~~~~~~~~~~-~~~~~~i~D~~g----------~~~~~~~~~   79 (193)
                      ++++...+++.|..|+|||||+|.+...... ... ++.+-+...-.+ -+.++.+.|.||          .+++.....
T Consensus       132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~  211 (320)
T KOG2486|consen  132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTK  211 (320)
T ss_pred             CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHH
Confidence            3567799999999999999999999876644 222 244444332222 357899999999          333445555


Q ss_pred             hhhcC---CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHhhhC--CCcC
Q 029446           80 HYFNN---TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT------PMEVCEGLG--LFDL  148 (193)
Q Consensus        80 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------~~~~~~~~~--~~~~  148 (193)
                      .|+.+   --.+++.+|++-+  ++...-....++.+   .+.|..+|.||||......      ...+...+.  ....
T Consensus       212 ~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~  286 (320)
T KOG2486|consen  212 SYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV  286 (320)
T ss_pred             HHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence            55544   3455666677532  12222222233333   6899999999999765321      011111111  0111


Q ss_pred             CCCceEEEEeccccCCCHHHHHHHHHH
Q 029446          149 KNRKWHIQGTCALKGDGLYEGLDWLAS  175 (193)
Q Consensus       149 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~  175 (193)
                      .....|++.+|+.++.|++++.-.|.+
T Consensus       287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  287 FLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             eeccCCceeeecccccCceeeeeehhh
Confidence            234457888999999999988766654

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.82  E-value=1.3e-08  Score=77.93  Aligned_cols=56  Identities=21%  Similarity=0.208  Sum_probs=43.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE-cCEEEEEEecCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY-KNVIFTVWDVGG   70 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g   70 (193)
                      ....+++|+|.||+||||+||+|.+.....+.+..|.+-..... -...+.++||||
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPG  186 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPG  186 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCC
Confidence            35688999999999999999999998886655555666544333 233489999999

>cd01859 MJ1464 MJ1464

Probab=98.81  E-value=1.9e-08  Score=69.08  Aligned_cols=56  Identities=23%  Similarity=0.291  Sum_probs=42.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEE-EcCEEEEEEecCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQ-YKNVIFTVWDVGG   70 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~D~~g   70 (193)
                      ....+++++|.+++||||++|++.+.....+.++.+.+..... ..+..+.+|||||
T Consensus        99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG  155 (156)
T cd01859          99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG  155 (156)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence            3567899999999999999999998766555666665543221 1234799999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.79  E-value=4.7e-09  Score=78.08  Aligned_cols=104  Identities=23%  Similarity=0.221  Sum_probs=73.7

Q ss_pred             hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446           82 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      ..+.|-+++++.+.+|+--..+...+.-+...   .++..++++||+|+.++.+..+ .+  .....+..+++++.+|++
T Consensus        77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~-~~--~~~~y~~~gy~v~~~s~~  150 (301)
T COG1162          77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV-KE--LLREYEDIGYPVLFVSAK  150 (301)
T ss_pred             ccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH-HH--HHHHHHhCCeeEEEecCc
Confidence            35688888888888775433333333333332   5677788899999998755543 11  112235678899999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446          162 KGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  193 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~  193 (193)
                      +++|++++.+.+..++  ..-.|++++|||||
T Consensus       151 ~~~~~~~l~~~l~~~~--svl~GqSGVGKSSL  180 (301)
T COG1162         151 NGDGLEELAELLAGKI--TVLLGQSGVGKSTL  180 (301)
T ss_pred             CcccHHHHHHHhcCCe--EEEECCCCCcHHHH
Confidence            9999999999988886  44559999999985

>cd01856 YlqF YlqF

Probab=98.77  E-value=2.2e-08  Score=69.88  Aligned_cols=56  Identities=18%  Similarity=0.268  Sum_probs=39.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeE--EEEEEcCEEEEEEecCCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV--EKVQYKNVIFTVWDVGGQ   71 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~g~   71 (193)
                      ...++++++|.+|+|||||+|++.+.......+..+.+.  ..+... ..+.+|||||-
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence            455799999999999999999999877643333333332  223332 56899999993

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.77  E-value=2.4e-08  Score=75.35  Aligned_cols=56  Identities=18%  Similarity=0.330  Sum_probs=41.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEE--EEEcCEEEEEEecCCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEK--VQYKNVIFTVWDVGGQ   71 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~g~   71 (193)
                      ...++++++|.+|+|||||+|++.+.......+..|.+...  +.. +..+.++||||-
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-GKGLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-CCcEEEEECCCc
Confidence            35689999999999999999999998765544444444332  222 346899999994

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.76  E-value=2.4e-08  Score=75.02  Aligned_cols=56  Identities=20%  Similarity=0.293  Sum_probs=40.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE--EEEEcCEEEEEEecCCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE--KVQYKNVIFTVWDVGGQ   71 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~g~   71 (193)
                      ...++++++|.+|+|||||+|++.+.......+..|.+..  .+... ..+.++||||-
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence            3568999999999999999999998775544333343332  23332 36799999995

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR00092 GTP-binding protein YchF

Probab=98.75  E-value=9e-08  Score=73.81  Aligned_cols=78  Identities=19%  Similarity=0.119  Sum_probs=57.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc-c--cc-ccccceeEEEEEEc-----------------CEEEEEEecCCCCC---
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEV-L--ST-VPTIGFNVEKVQYK-----------------NVIFTVWDVGGQEK---   73 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~-~--~~-~~t~~~~~~~~~~~-----------------~~~~~i~D~~g~~~---   73 (193)
                      ++++++|.|++|||||+|.+++... .  .+ ..|...+...+...                 ...+.+.|.||-..   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998876 3  22 34455555555442                 34789999999332   


Q ss_pred             ----CHHhHHhhhcCCCEEEEEEECC
Q 029446           74 ----LRPLWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        74 ----~~~~~~~~~~~~d~~i~v~d~~   95 (193)
                          ........++++|+++.|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2223445568999999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.74  E-value=3.8e-08  Score=70.52  Aligned_cols=116  Identities=14%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc----------ccccceeEEE--EEEc--CEEEEEEecCCCCC------
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST----------VPTIGFNVEK--VQYK--NVIFTVWDVGGQEK------   73 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----------~~t~~~~~~~--~~~~--~~~~~i~D~~g~~~------   73 (193)
                      ..-.|+|.|+|..|.|||||+|.++.......          ..|+.+...+  +.-+  ..++.+.||||-.+      
T Consensus        43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n  122 (336)
T KOG1547|consen   43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN  122 (336)
T ss_pred             ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence            45679999999999999999999987654321          1233333222  2223  45788999999211      


Q ss_pred             --------------------CHHhHHhhhc--CCCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446           74 --------------------LRPLWRHYFN--NTDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDM  130 (193)
Q Consensus        74 --------------------~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl  130 (193)
                                          ....+...+.  ..++++|.+.++. .++..+. ..++.+.     .-..+|-|+.|.|-
T Consensus       123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt-----~vvNvvPVIakaDt  196 (336)
T KOG1547|consen  123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT-----EVVNVVPVIAKADT  196 (336)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh-----hhheeeeeEeeccc
Confidence                                1111111122  3788899888873 2233332 2222322     12447889999997


Q ss_pred             CCCCC
Q 029446          131 KGAMT  135 (193)
Q Consensus       131 ~~~~~  135 (193)
                      ..-++
T Consensus       197 lTleE  201 (336)
T KOG1547|consen  197 LTLEE  201 (336)
T ss_pred             ccHHH
Confidence            65433

>PRK01889 GTPase RsgA; Reviewed

Probab=98.73  E-value=2.8e-08  Score=77.09  Aligned_cols=102  Identities=20%  Similarity=0.223  Sum_probs=67.1

Q ss_pred             hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446           82 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      ..++|.+++|+++..+-....+..++..+..    .+.|.++|+||+|+.+..  .+..+.+..  . ..+++++.+|++
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~--~~~~~~~~~--~-~~g~~Vi~vSa~  180 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDA--EEKIAEVEA--L-APGVPVLAVSAL  180 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCH--HHHHHHHHH--h-CCCCcEEEEECC
Confidence            5789999999999744333344444444322    467789999999998641  112121211  1 346689999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446          162 KGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  193 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~  193 (193)
                      ++.|++++.+++..- ....--|.+++|||+|
T Consensus       181 ~g~gl~~L~~~L~~g-~~~~lvG~sgvGKStL  211 (356)
T PRK01889        181 DGEGLDVLAAWLSGG-KTVALLGSSGVGKSTL  211 (356)
T ss_pred             CCccHHHHHHHhhcC-CEEEEECCCCccHHHH
Confidence            999999988887421 0123348899999864

>cd01855 YqeH YqeH

Probab=98.72  E-value=3e-08  Score=70.38  Aligned_cols=54  Identities=24%  Similarity=0.326  Sum_probs=36.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc--------ccccccceeEE--EEEEcCEEEEEEecCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--------STVPTIGFNVE--KVQYKNVIFTVWDVGG   70 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--------~~~~t~~~~~~--~~~~~~~~~~i~D~~g   70 (193)
                      +...++++|.+|+|||||+|++.+....        ...+..|.+..  .+.... .+.++||||
T Consensus       126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG  189 (190)
T cd01855         126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG  189 (190)
T ss_pred             cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence            4568999999999999999999975421        11122233332  232222 589999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.65  E-value=1.1e-06  Score=64.09  Aligned_cols=84  Identities=18%  Similarity=0.104  Sum_probs=56.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC--Cccc----cccccceeEEEEEE---cCEEEEEEecCCCCCC------HHhHH
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG--EVLS----TVPTIGFNVEKVQY---KNVIFTVWDVGGQEKL------RPLWR   79 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~--~~~~----~~~t~~~~~~~~~~---~~~~~~i~D~~g~~~~------~~~~~   79 (193)
                      ....-|.|+|++++|||+|+|.+.+.  .+..    ...|.|+-......   ....+.++||+|-...      .....
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            34567899999999999999999998  5542    13344544433333   3578999999994432      22223


Q ss_pred             hhhcC--CCEEEEEEECCChh
Q 029446           80 HYFNN--TDGLIYVVDSLDRE   98 (193)
Q Consensus        80 ~~~~~--~d~~i~v~d~~~~~   98 (193)
                      ..+..  ++++|+..+.....
T Consensus        85 ~~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          85 FALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHHhCEEEEeccCcccH
Confidence            33334  88999888876443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.64  E-value=1.3e-07  Score=64.92  Aligned_cols=53  Identities=19%  Similarity=0.243  Sum_probs=37.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGG   70 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g   70 (193)
                      ....+++++|.+|+|||||+|.+.+......    ..|.....  +.. +..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKL-DNKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEe-cCCEEEEECCC
Confidence            4678899999999999999999998664321    22333322  222 24689999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=2e-07  Score=76.44  Aligned_cols=107  Identities=17%  Similarity=0.201  Sum_probs=77.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCc--c----------cc---ccccceeEEE----EEEcCEEEEEEecCCCCCCH
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEV--L----------ST---VPTIGFNVEK----VQYKNVIFTVWDVGGQEKLR   75 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~--~----------~~---~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~   75 (193)
                      ...=+++++.+..-|||||..+|....-  +          ++   .-+.|++...    .-.++..+.++|+||+.+|.
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~   86 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS   86 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence            4456899999999999999999976431  1          11   2233444332    22378999999999999999


Q ss_pred             HhHHhhhcCCCEEEEEEECCCh---hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 029446           76 PLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQD  129 (193)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  129 (193)
                      +......+-+|++++++|+...   ++..-+.+.|.+        +...|+|+||+|
T Consensus        87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkid  135 (887)
T KOG0467|consen   87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKID  135 (887)
T ss_pred             hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhh
Confidence            9999999999999999999754   333333333332        344799999999

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.61  E-value=1.2e-06  Score=69.99  Aligned_cols=81  Identities=11%  Similarity=0.215  Sum_probs=56.5

Q ss_pred             EEEEEEecCC-------------CCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Q 029446           61 VIFTVWDVGG-------------QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK  127 (193)
Q Consensus        61 ~~~~i~D~~g-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK  127 (193)
                      -++.++|.||             .+........+.++.+++|+|+.-.   +.++-...+.++.......+...|+|+||
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTK  488 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTK  488 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence            3789999999             1122345678889999999999532   33444455556666556677889999999


Q ss_pred             CCCCCC--CCHhHHHhhhC
Q 029446          128 QDMKGA--MTPMEVCEGLG  144 (193)
Q Consensus       128 ~Dl~~~--~~~~~~~~~~~  144 (193)
                      .|+.+.  ..+..+.+.+.
T Consensus       489 VDlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  489 VDLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             cchhhhccCCHHHHHHHHh
Confidence            999875  34566666554

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.60  E-value=2.9e-07  Score=69.15  Aligned_cols=82  Identities=23%  Similarity=0.372  Sum_probs=58.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-cc--ccccceeEEEEEE-----------------cCEEEEEEecCCCCC-
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-ST--VPTIGFNVEKVQY-----------------KNVIFTVWDVGGQEK-   73 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~--~~t~~~~~~~~~~-----------------~~~~~~i~D~~g~~~-   73 (193)
                      ...+++.+||.||+|||||+|.+++.... .+  ..|++.+...+..                 -+..++++|++|-.. 
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            36789999999999999999999987654 22  3466655554433                 156899999988211 


Q ss_pred             ------CHHhHHhhhcCCCEEEEEEECCC
Q 029446           74 ------LRPLWRHYFNNTDGLIYVVDSLD   96 (193)
Q Consensus        74 ------~~~~~~~~~~~~d~~i~v~d~~~   96 (193)
                            ..-...+.++.+|+++-|+++..
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEecC
Confidence                  11122334588999999998854

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=3.7e-07  Score=73.02  Aligned_cols=111  Identities=17%  Similarity=0.127  Sum_probs=73.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (193)
                      -+|-|+|+|+||+||||||++|...-...+...+.--+..+..+..+++++.+|.  .... .....+-+|.+++++|.+
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~-miDvaKIaDLVlLlIdgn  144 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPS--DLHQ-MIDVAKIADLVLLLIDGN  144 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChH--HHHH-HHhHHHhhheeEEEeccc
Confidence            4678899999999999999999865443332222223445566788999999993  2222 333447799999999997


Q ss_pred             ChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCC
Q 029446           96 DRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAM  134 (193)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~  134 (193)
                      -.-.++..  .+..++..   ++.| ++-|+|..|+....
T Consensus       145 fGfEMETm--EFLnil~~---HGmPrvlgV~ThlDlfk~~  179 (1077)
T COG5192         145 FGFEMETM--EFLNILIS---HGMPRVLGVVTHLDLFKNP  179 (1077)
T ss_pred             cCceehHH--HHHHHHhh---cCCCceEEEEeecccccCh
Confidence            54333332  23333332   4555 45789999998754

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.59  E-value=9e-07  Score=78.43  Aligned_cols=111  Identities=17%  Similarity=0.223  Sum_probs=67.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc-----ccc--cceeEEEEE-EcCEEEEEEecCC----C----CCCHHhHHhhh
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLST-----VPT--IGFNVEKVQ-YKNVIFTVWDVGG----Q----EKLRPLWRHYF   82 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~-----~~t--~~~~~~~~~-~~~~~~~i~D~~g----~----~~~~~~~~~~~   82 (193)
                      =.+|+|++|+||||+++.. +-.++-.     ..+  ++.+. ..+ +-.-+-+++||+|    +    +.....|..++
T Consensus       113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL  190 (1169)
T TIGR03348       113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFL  190 (1169)
T ss_pred             CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence            4689999999999999886 4444311     011  11111 111 1234567999999    2    12334454444


Q ss_pred             c---------CCCEEEEEEECCCh-----hhH----HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           83 N---------NTDGLIYVVDSLDR-----ERI----GKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        83 ~---------~~d~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                      .         -.|++|+++|+.+.     +..    ..+...+.++... -....|+.+++||+|+..
T Consensus       191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence            3         48999999999643     111    2333444444333 235899999999999874

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=1.3e-07  Score=75.77  Aligned_cols=111  Identities=15%  Similarity=0.176  Sum_probs=77.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC-----cccc------------ccccceeE----EEEEEcCEEEEEEecCCCCCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGE-----VLST------------VPTIGFNV----EKVQYKNVIFTVWDVGGQEKL   74 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~-----~~~~------------~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~   74 (193)
                      +.=+|.++.+-.+||||+-+++....     +.+.            ...-|++.    ....|....+.++||||+-.|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            33478999999999999998876421     1110            00112222    235567899999999999999


Q ss_pred             HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      .......++-.|++++++|+...-.-+.. ..|.+..+    .++|.|..+||+|..
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~r----y~vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQMKR----YNVPRICFINKMDRM  169 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhH-HHHHHHHh----cCCCeEEEEehhhhc
Confidence            98888889999999999998643221222 23334333    589999999999975

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.54  E-value=2.6e-07  Score=70.47  Aligned_cols=152  Identities=24%  Similarity=0.205  Sum_probs=89.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-----------------ccc--ccccee--------------------EEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-----------------STV--PTIGFN--------------------VEKVQ   57 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-----------------~~~--~t~~~~--------------------~~~~~   57 (193)
                      +.+|+|+|+..+|||||+--|..+...                 +..  +.+|-+                    ...+.
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            469999999999999998766542210                 111  111111                    11111


Q ss_pred             E---cCEEEEEEecCCCCCCHHhHHhhhc--CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           58 Y---KNVIFTVWDVGGQEKLRPLWRHYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        58 ~---~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                      +   ...-+.++|.+|+++|.+...-...  -.|..++++-++-.. +-...+-+--.    -....|+++|.+|+|+.+
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLA----LaL~VPVfvVVTKIDMCP  287 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLA----LALHVPVFVVVTKIDMCP  287 (641)
T ss_pred             eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhh----hhhcCcEEEEEEeeccCc
Confidence            1   1346889999999999887644433  368888888765321 00011111111    124789999999999988


Q ss_pred             CCCHhHHHhhh----CCC---------------------cCCCCceEEEEeccccCCCHHHHHHHH
Q 029446          133 AMTPMEVCEGL----GLF---------------------DLKNRKWHIQGTCALKGDGLYEGLDWL  173 (193)
Q Consensus       133 ~~~~~~~~~~~----~~~---------------------~~~~~~~~~~~~Sa~~~~gi~~~~~~l  173 (193)
                      ....+|-.+.+    ...                     ...++-+|+|.+|-.+|+|++-+..++
T Consensus       288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL  353 (641)
T KOG0463|consen  288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL  353 (641)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence            65554433222    111                     112234689999999999987654433

>PRK14974 cell division protein FtsY; Provisional

Probab=98.51  E-value=1.9e-06  Score=66.17  Aligned_cols=139  Identities=20%  Similarity=0.252  Sum_probs=77.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC----Ccc------cc------------ccccceeEEEE-----------------
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG----EVL------ST------------VPTIGFNVEKV-----------------   56 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~----~~~------~~------------~~t~~~~~~~~-----------------   56 (193)
                      +...++++|.+|+||||++.++...    ...      ++            ....++.+...                 
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~  218 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA  218 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence            4678999999999999977777531    110      00            00111111110                 


Q ss_pred             EEcCEEEEEEecCCCCCCHHhH----Hhh--hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446           57 QYKNVIFTVWDVGGQEKLRPLW----RHY--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  130 (193)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  130 (193)
                      ...+..+.++||+|........    ...  .-+.|.+++|+|+...+..-+....+....       .+--+++||.|.
T Consensus       219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~  291 (336)
T PRK14974        219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDA  291 (336)
T ss_pred             HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecC
Confidence            0124579999999976543222    111  125789999999975432222222222211       113588999998


Q ss_pred             CCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446          131 KGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus       131 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      ...... -.+....+        .|+..++  +|++++++..
T Consensus       292 ~~~~G~~ls~~~~~~--------~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        292 DAKGGAALSIAYVIG--------KPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             CCCccHHHHHHHHHC--------cCEEEEe--CCCChhhccc
Confidence            765322 22333332        3677776  7999987654

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=8.3e-08  Score=71.17  Aligned_cols=160  Identities=13%  Similarity=0.086  Sum_probs=99.2

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----cc--cccceeEE--------------------------------
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS----TV--PTIGFNVE--------------------------------   54 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~----~~--~t~~~~~~--------------------------------   54 (193)
                      ..+..++|.-+|+..-||||+++.+++-+...    ..  .|...-|.                                
T Consensus        34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~  113 (466)
T KOG0466|consen   34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD  113 (466)
T ss_pred             hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence            34567899999999999999999987732110    00  00000000                                


Q ss_pred             ------EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh----hhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446           55 ------KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR----ERIGKAKQEFQAIIKDPFMLNSVILVF  124 (193)
Q Consensus        55 ------~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~ivv  124 (193)
                            .+. --..+.+.|+||++-.-........--|++++++..+.+    ++-+.+..  .++.     +-+.++++
T Consensus       114 ~~g~~~~~k-lvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM-----~Lkhiiil  185 (466)
T KOG0466|consen  114 RPGCEGKMK-LVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIM-----KLKHIIIL  185 (466)
T ss_pred             cCCCCCceE-EEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHh-----hhceEEEE
Confidence                  000 023678999999976655544444456889999888753    33333221  1111     12348999


Q ss_pred             EeCCCCCCCCCHhHHHhhhC-C-CcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446          125 ANKQDMKGAMTPMEVCEGLG-L-FDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       125 ~nK~Dl~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  180 (193)
                      -||+|+..+....+.-+... . ......+.|++++||.-..|++.+.++|.+++.--
T Consensus       186 QNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP  243 (466)
T KOG0466|consen  186 QNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP  243 (466)
T ss_pred             echhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence            99999988644322221111 0 11123566999999999999999999999988643

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=3.2e-07  Score=70.41  Aligned_cols=158  Identities=19%  Similarity=0.153  Sum_probs=96.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC--------------------Ccc--------------ccccccceeEEEEEEc
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG--------------------EVL--------------STVPTIGFNVEKVQYK   59 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~--------------------~~~--------------~~~~t~~~~~~~~~~~   59 (193)
                      +....++.++|+..+||||+-..+...                    .-+              ....|++.....+.-.
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            467899999999999999986554320                    000              0122333444444556


Q ss_pred             CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh---hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--  134 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--  134 (193)
                      ...+.+.|+||+..|-........++|..++|+++...   -.|+.--+.-.+..-.....-...|+++||+|-...+  
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs  235 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS  235 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence            78999999999999998888888899999999998532   1222221111111110011224479999999966421  


Q ss_pred             --CHhHHHhhhCCC----cC-CCCceEEEEeccccCCCHHHHHH
Q 029446          135 --TPMEVCEGLGLF----DL-KNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus       135 --~~~~~~~~~~~~----~~-~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                        ...+..+.+...    -. -.....++++|..+|.++++...
T Consensus       236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence              122222222110    01 12445699999999999887543

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.44  E-value=4.3e-06  Score=65.99  Aligned_cols=111  Identities=20%  Similarity=0.167  Sum_probs=64.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc------CCcc----cc------------ccccceeEEEEE----------------
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI------GEVL----ST------------VPTIGFNVEKVQ----------------   57 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~------~~~~----~~------------~~t~~~~~~~~~----------------   57 (193)
                      .+..|+++|.+|+||||++..|..      ....    ++            ....++.+....                
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~  178 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF  178 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence            356789999999999999998862      1110    11            011122222110                


Q ss_pred             -EcCEEEEEEecCCCCCCHHhHHhh------hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446           58 -YKNVIFTVWDVGGQEKLRPLWRHY------FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  130 (193)
Q Consensus        58 -~~~~~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  130 (193)
                       .....+.++||+|........-..      ..+++.+++|+|++-.+.-.++...+.+.       -.+--+|+||.|.
T Consensus       179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~  251 (429)
T TIGR01425       179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDG  251 (429)
T ss_pred             HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccC
Confidence             025789999999976553322111      12478899999997543322222222221       1235688999997


Q ss_pred             CCC
Q 029446          131 KGA  133 (193)
Q Consensus       131 ~~~  133 (193)
                      ...
T Consensus       252 ~ar  254 (429)
T TIGR01425       252 HAK  254 (429)
T ss_pred             CCC
Confidence            654

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.44  E-value=5.4e-06  Score=63.38  Aligned_cols=139  Identities=17%  Similarity=0.196  Sum_probs=78.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc----------cc------------ccccceeEEEE-----------------
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL----------ST------------VPTIGFNVEKV-----------------   56 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~----------~~------------~~t~~~~~~~~-----------------   56 (193)
                      ....++++|++|+||||++..+......          +.            ....++.+...                 
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999888652110          00            00011111111                 


Q ss_pred             EEcCEEEEEEecCCCCCCHHh----HHhh--------hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446           57 QYKNVIFTVWDVGGQEKLRPL----WRHY--------FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF  124 (193)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv  124 (193)
                      ......+.++||||.......    ....        -...+..++|+|++...  +.+.+ .....+.    -.+.-+|
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~~~~giI  265 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----VGLTGII  265 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----CCCCEEE
Confidence            013568999999997653322    1111        12477899999998432  23322 2222211    1234689


Q ss_pred             EeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446          125 ANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus       125 ~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      +||.|....-. .-.+....+        .|+..++  +|++++++..
T Consensus       266 lTKlD~t~~~G~~l~~~~~~~--------~Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        266 LTKLDGTAKGGVVFAIADELG--------IPIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             EECCCCCCCccHHHHHHHHHC--------CCEEEEe--CCCChhhCcc
Confidence            99999665422 223333333        3777777  8888877654

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=6.5e-07  Score=67.44  Aligned_cols=142  Identities=21%  Similarity=0.204  Sum_probs=88.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc-------CCcccc--------ccccceeE--EEEEE--cCEEEEEEecCCCCCCHH
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI-------GEVLST--------VPTIGFNV--EKVQY--KNVIFTVWDVGGQEKLRP   76 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~-------~~~~~~--------~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~   76 (193)
                      -.++|.-+|+..-|||||...++.       ..+..|        ....|+++  ..+.+  ....+.=.|+||+.+|-+
T Consensus        53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK  132 (449)
T KOG0460|consen   53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK  132 (449)
T ss_pred             CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence            457999999999999999877754       111111        11223333  33333  456778899999999999


Q ss_pred             hHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-----HHHhhhCCCcCCCC
Q 029446           77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-----EVCEGLGLFDLKNR  151 (193)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~  151 (193)
                      .....-..-|++|+|+.++|..=-+.  ....-+.++..  -..+++.+||.|++++.+..     ++++.+...-+..-
T Consensus       133 NMItGaaqMDGaILVVaatDG~MPQT--rEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd  208 (449)
T KOG0460|consen  133 NMITGAAQMDGAILVVAATDGPMPQT--REHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD  208 (449)
T ss_pred             HhhcCccccCceEEEEEcCCCCCcch--HHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence            98888788999999999987531111  11111222211  13478999999999654332     23333333333455


Q ss_pred             ceEEEEeccc
Q 029446          152 KWHIQGTCAL  161 (193)
Q Consensus       152 ~~~~~~~Sa~  161 (193)
                      +.|++.-||.
T Consensus       209 ~~PvI~GSAL  218 (449)
T KOG0460|consen  209 NTPVIRGSAL  218 (449)
T ss_pred             CCCeeecchh
Confidence            6688876665

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.42  E-value=1.9e-06  Score=59.36  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -++++|..|+|||||++++...
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            3679999999999999998764

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.42  E-value=1.2e-07  Score=66.08  Aligned_cols=105  Identities=16%  Similarity=0.037  Sum_probs=56.9

Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC--------CCC------
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL--------KNR------  151 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~------  151 (193)
                      |++++|+|+.++.+-..  ..+.+.+.. ...+.|+|+|+||+|+.+.....++.+.+.....        +..      
T Consensus         1 DvVl~VvDar~p~~~~~--~~i~~~~~l-~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (172)
T cd04178           1 DVILEVLDARDPLGCRC--PQVEEAVLQ-AGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQ   77 (172)
T ss_pred             CEEEEEEECCCCCCCCC--HHHHHHHHh-ccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhh
Confidence            78999999987533211  222222110 1146899999999999875444444433321100        000      


Q ss_pred             ------ceEEEEeccccCCCHHHHHHHHHHHHHhh--------hccCCCCCCcCCC
Q 029446          152 ------KWHIQGTCALKGDGLYEGLDWLASTLKEM--------RAAGYSSVGTSSF  193 (193)
Q Consensus       152 ------~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~--------~~~~~~~~~~~~~  193 (193)
                            ......+|+..+.|.+++++.+.+.....        .--|.+++|||||
T Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSsl  133 (172)
T cd04178          78 KSVKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSL  133 (172)
T ss_pred             cccccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHH
Confidence                  00112345555666777766665533322        1138999999975

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.42  E-value=5.6e-07  Score=66.40  Aligned_cols=64  Identities=14%  Similarity=0.158  Sum_probs=40.6

Q ss_pred             hhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------ccccceeEEEEEEcCEEEEEEecCCC
Q 029446            3 QAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-----------VPTIGFNVEKVQYKNVIFTVWDVGGQ   71 (193)
Q Consensus         3 ~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~i~D~~g~   71 (193)
                      ..+..+++....   -.++++|.+|+|||||+|++.+.....+           ..|.......+  .  ...++||||-
T Consensus       109 ~gi~eLf~~l~~---~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~--~~~liDtPG~  181 (245)
T TIGR00157       109 DGLKELIEALQN---RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H--GGLIADTPGF  181 (245)
T ss_pred             hhHHHHHhhhcC---CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C--CcEEEeCCCc
Confidence            345555554332   3789999999999999999998643221           12333333333  2  2389999995


Q ss_pred             CC
Q 029446           72 EK   73 (193)
Q Consensus        72 ~~   73 (193)
                      ..
T Consensus       182 ~~  183 (245)
T TIGR00157       182 NE  183 (245)
T ss_pred             cc
Confidence            44

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12289 GTPase RsgA; Reviewed

Probab=98.42  E-value=7.1e-07  Score=69.00  Aligned_cols=37  Identities=19%  Similarity=0.303  Sum_probs=26.7

Q ss_pred             hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc
Q 029446            4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL   43 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~   43 (193)
                      .+..+++....   ..++++|.+|+|||||||+|.+....
T Consensus       162 GI~eL~~~L~~---ki~v~iG~SgVGKSSLIN~L~~~~~~  198 (352)
T PRK12289        162 GLEALLEQLRN---KITVVAGPSGVGKSSLINRLIPDVEL  198 (352)
T ss_pred             CHHHHhhhhcc---ceEEEEeCCCCCHHHHHHHHcCcccc
Confidence            34455444332   23899999999999999999976543

>PRK12288 GTPase RsgA; Reviewed

Probab=98.40  E-value=9.4e-07  Score=68.28  Aligned_cols=54  Identities=13%  Similarity=0.134  Sum_probs=35.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccc-----------cccceeEEEEEEcCEEEEEEecCCCCCCH
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTV-----------PTIGFNVEKVQYKNVIFTVWDVGGQEKLR   75 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (193)
                      .++++|.+|+|||||+|+|.+.....+.           .|.......+..+   ..++||||-.++.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            3789999999999999999986543221           1222222223222   3599999965443

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.40  E-value=2.5e-06  Score=62.20  Aligned_cols=134  Identities=24%  Similarity=0.357  Sum_probs=94.2

Q ss_pred             ccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCCC
Q 029446           48 TIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPFML  117 (193)
Q Consensus        48 t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~  117 (193)
                      |.|+....++...+.+..+|.+||-.-+..|..++.+..++|+|+..+.          ...+++....+..+-+....+
T Consensus       189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~  268 (379)
T KOG0099|consen  189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR  268 (379)
T ss_pred             ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence            5677777888889999999999999999999999999999999998864          234555556666665555667


Q ss_pred             CCeEEEEEeCCCCCCCC------------------------------CHhHHHhhhC------C-CcC---CCCceEEEE
Q 029446          118 NSVILVFANKQDMKGAM------------------------------TPMEVCEGLG------L-FDL---KNRKWHIQG  157 (193)
Q Consensus       118 ~~p~ivv~nK~Dl~~~~------------------------------~~~~~~~~~~------~-~~~---~~~~~~~~~  157 (193)
                      .+.+|+.+||-|+..+.                              ++.-+...+-      . .-+   ...-+.+..
T Consensus       269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF  348 (379)
T KOG0099|consen  269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF  348 (379)
T ss_pred             hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence            78899999999986310                              1111111110      0 000   112233555


Q ss_pred             eccccCCCHHHHHHHHHHHHHhhh
Q 029446          158 TCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       158 ~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      +.|.+-++|..+|+-..+.+....
T Consensus       349 TcAvDTenIrrVFnDcrdiIqr~h  372 (379)
T KOG0099|consen  349 TCAVDTENIRRVFNDCRDIIQRMH  372 (379)
T ss_pred             eEeechHHHHHHHHHHHHHHHHHH
Confidence            888889999999998888776554

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.39  E-value=1.3e-06  Score=61.68  Aligned_cols=115  Identities=16%  Similarity=0.162  Sum_probs=62.9

Q ss_pred             CEEEEEEecCCCCCCHHhH------HhhhcC---CCEEEEEEECC---Ch-hhHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 029446           60 NVIFTVWDVGGQEKLRPLW------RHYFNN---TDGLIYVVDSL---DR-ERIGKAKQEFQAIIKDPFMLNSVILVFAN  126 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~------~~~~~~---~d~~i~v~d~~---~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~n  126 (193)
                      .-.+.++|+|||-+.....      ...++.   .-++++++|..   +. .-+......+...+.    -..|.|=|++
T Consensus        97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvls  172 (273)
T KOG1534|consen   97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLS  172 (273)
T ss_pred             cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhh
Confidence            3478999999987653321      111121   34556666653   11 111122222222222    4688999999


Q ss_pred             CCCCCCCCCHhHHHhhhCCCc----------C-----------------CCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          127 KQDMKGAMTPMEVCEGLGLFD----------L-----------------KNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       127 K~Dl~~~~~~~~~~~~~~~~~----------~-----------------~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      |+|+......+++.+.+....          +                 ...-+.+++..+.+.+.++.++..|-..++
T Consensus       173 KMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ  251 (273)
T KOG1534|consen  173 KMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ  251 (273)
T ss_pred             HHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence            999987533333333322110          0                 011246788887788888888888777664

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=9.3e-08  Score=73.73  Aligned_cols=125  Identities=18%  Similarity=0.149  Sum_probs=87.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC--------Ccc---------ccccccceeE----EEEEEcCEEEEEEecCCCCCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG--------EVL---------STVPTIGFNV----EKVQYKNVIFTVWDVGGQEKL   74 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~--------~~~---------~~~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~   74 (193)
                      +--+|.++.+-.+||||...++..-        ...         ......|+++    ..++|++.++.++||||+..|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            3458999999999999998887531        111         0111223443    356778999999999999999


Q ss_pred             HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC---CCHhHHHhhhCC
Q 029446           75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA---MTPMEVCEGLGL  145 (193)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~  145 (193)
                      +-....+++-.|+++.|||++-.-.-+.+. .|.+.    ...++|-+.++||+|....   ...+.+.+.++.
T Consensus       116 ~leverclrvldgavav~dasagve~qtlt-vwrqa----dk~~ip~~~finkmdk~~anfe~avdsi~ekl~a  184 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTLT-VWRQA----DKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA  184 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCcccceee-eehhc----cccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence            999999999999999999997543222222 23332    2357899999999997653   233455555553

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.35  E-value=1.1e-06  Score=68.35  Aligned_cols=55  Identities=20%  Similarity=0.366  Sum_probs=36.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc-----cccccccceeEE--EEEEcCEEEEEEecCCCCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEV-----LSTVPTIGFNVE--KVQYKNVIFTVWDVGGQEK   73 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~-----~~~~~t~~~~~~--~~~~~~~~~~i~D~~g~~~   73 (193)
                      -+++++|.+|+|||||+|++.+...     ....+..+.+..  .+.. .-.+.++||||-..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCCC
Confidence            5899999999999999999997532     111222233322  2222 23467999999543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.34  E-value=3.6e-05  Score=57.72  Aligned_cols=139  Identities=16%  Similarity=0.176  Sum_probs=78.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc----------cc------------ccccceeEEEE-----------------
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL----------ST------------VPTIGFNVEKV-----------------   56 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~----------~~------------~~t~~~~~~~~-----------------   56 (193)
                      ..-.++++|++|+||||.+..+...-..          +.            ....+..+...                 
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~  150 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA  150 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence            3457889999999999998877531100          00            00111111100                 


Q ss_pred             EEcCEEEEEEecCCCCCCHHhHHh-------hh-----cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446           57 QYKNVIFTVWDVGGQEKLRPLWRH-------YF-----NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF  124 (193)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~~~~-------~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv  124 (193)
                      ...+..+.++||||..........       ..     ..+|.+++|+|++...  +.+. ....+.+..    .+--+|
T Consensus       151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~----~~~g~I  223 (272)
T TIGR00064       151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV----GLTGII  223 (272)
T ss_pred             HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC----CCCEEE
Confidence            013578999999997764433221       11     1389999999997432  2222 223332211    124689


Q ss_pred             EeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446          125 ANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus       125 ~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      .||.|....... -.+....+        .|+..++  +|++++++..
T Consensus       224 lTKlDe~~~~G~~l~~~~~~~--------~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       224 LTKLDGTAKGGIILSIAYELK--------LPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             EEccCCCCCccHHHHHHHHHC--------cCEEEEe--CCCChHhCcc
Confidence            999998665322 23333333        3677776  7888877644

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.33  E-value=1.3e-06  Score=59.87  Aligned_cols=35  Identities=23%  Similarity=0.407  Sum_probs=26.1

Q ss_pred             hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446            4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .+..+.+....   -.++++|+.|||||||+|.|.+..
T Consensus        25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence            34444443332   467899999999999999999874

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.29  E-value=2.3e-06  Score=62.88  Aligned_cols=119  Identities=13%  Similarity=0.215  Sum_probs=75.8

Q ss_pred             hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----ccccceeEEEEEE--c--CEEEEEEecCCC-------CCC
Q 029446           11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-----VPTIGFNVEKVQY--K--NVIFTVWDVGGQ-------EKL   74 (193)
Q Consensus        11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~--~--~~~~~i~D~~g~-------~~~   74 (193)
                      +....-.|+|+-+|..|.||||||+.|++-.+...     .|++.....++..  .  .+++.+.||.|-       +.|
T Consensus        36 sv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Sy  115 (406)
T KOG3859|consen   36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSY  115 (406)
T ss_pred             HHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCccccc
Confidence            34556789999999999999999999999776532     3444444433332  2  467899999991       111


Q ss_pred             HH-------hHHhhh-------------c--CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           75 RP-------LWRHYF-------------N--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        75 ~~-------~~~~~~-------------~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                      ..       ....|+             +  .+++++|.+.++ ..++..+.-....-+.    ....+|.|+.|.|...
T Consensus       116 k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld----skVNIIPvIAKaDtis  190 (406)
T KOG3859|consen  116 KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD----SKVNIIPVIAKADTIS  190 (406)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh----hhhhhHHHHHHhhhhh
Confidence            11       111111             1  478888888887 4455555543333333    3455788889999776


Q ss_pred             CC
Q 029446          133 AM  134 (193)
Q Consensus       133 ~~  134 (193)
                      ..
T Consensus       191 K~  192 (406)
T KOG3859|consen  191 KE  192 (406)
T ss_pred             HH
Confidence            53

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.24  E-value=3.6e-05  Score=60.07  Aligned_cols=155  Identities=15%  Similarity=0.147  Sum_probs=84.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCc-----------------c-----ccccccceeE-----EEEEE---cCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEV-----------------L-----STVPTIGFNV-----EKVQY---KNVIFT   64 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~-----------------~-----~~~~t~~~~~-----~~~~~---~~~~~~   64 (193)
                      ...+=++|||+.-+||||||++|..-..                 +     .+..|+...+     ..+..   -.++++
T Consensus        15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR   94 (492)
T PF09547_consen   15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR   94 (492)
T ss_pred             CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence            4567789999999999999999976211                 1     1122333222     12322   367899


Q ss_pred             EEecCC-------------CCC------------CHHh----HHhhhc--CCCEEEEEEECC----ChhhHHHHHHHHHH
Q 029446           65 VWDVGG-------------QEK------------LRPL----WRHYFN--NTDGLIYVVDSL----DRERIGKAKQEFQA  109 (193)
Q Consensus        65 i~D~~g-------------~~~------------~~~~----~~~~~~--~~d~~i~v~d~~----~~~s~~~~~~~~~~  109 (193)
                      +.|+.|             .++            |..-    ++..++  ..-++++.-|.+    .++.+.+..+....
T Consensus        95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~  174 (492)
T PF09547_consen   95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE  174 (492)
T ss_pred             EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence            999988             011            1100    011111  123444444554    24455555544444


Q ss_pred             HHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          110 IIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       110 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      .++.   -++|+++++|-.+-..+ +..++.+.+.    +++++++++++|..- .-+++...|.+.++
T Consensus       175 ELk~---igKPFvillNs~~P~s~-et~~L~~eL~----ekY~vpVlpvnc~~l-~~~DI~~Il~~vLy  234 (492)
T PF09547_consen  175 ELKE---IGKPFVILLNSTKPYSE-ETQELAEELE----EKYDVPVLPVNCEQL-REEDITRILEEVLY  234 (492)
T ss_pred             HHHH---hCCCEEEEEeCCCCCCH-HHHHHHHHHH----HHhCCcEEEeehHHc-CHHHHHHHHHHHHh
Confidence            4443   58999999998874433 3334444442    456678888877532 23444444444443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK13796 GTPase YqeH; Provisional

Probab=98.23  E-value=1.9e-06  Score=67.19  Aligned_cols=54  Identities=17%  Similarity=0.262  Sum_probs=34.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCc-----cccccccceeEE--EEEEcCEEEEEEecCCC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEV-----LSTVPTIGFNVE--KVQYKNVIFTVWDVGGQ   71 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~-----~~~~~t~~~~~~--~~~~~~~~~~i~D~~g~   71 (193)
                      .-+++++|.+|+|||||||+|.....     ....+..|.+..  .+... -...++||||-
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~-~~~~l~DTPGi  220 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD-DGSFLYDTPGI  220 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC-CCcEEEECCCc
Confidence            35899999999999999999985431     111222222322  22222 12479999995

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.23  E-value=0.00011  Score=49.96  Aligned_cols=26  Identities=27%  Similarity=0.461  Sum_probs=22.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ...++|.|.|+||+||||++.++.+.
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~   28 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEK   28 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHH
Confidence            35689999999999999999888753

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.21  E-value=1.2e-06  Score=67.08  Aligned_cols=116  Identities=20%  Similarity=0.152  Sum_probs=76.6

Q ss_pred             ecCCC-CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC
Q 029446           67 DVGGQ-EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL  145 (193)
Q Consensus        67 D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  145 (193)
                      +.||+ .++.......+...|+++.|+|+.++.+...  ..+..+..     +.|.++|+||.|+.+.....++.+.+..
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v~-----~k~~i~vlNK~DL~~~~~~~~W~~~~~~   88 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN--PELERIVK-----EKPKLLVLNKADLAPKEVTKKWKKYFKK   88 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC--ccHHHHHc-----cCCcEEEEehhhcCCHHHHHHHHHHHHh
Confidence            33664 4566777888899999999999988765333  23444433     3445999999999997666677766654


Q ss_pred             CcCCCCceEEEEeccccCCCHHHHHH-------HHHHHHHhhh---------ccCCCCCCcCCC
Q 029446          146 FDLKNRKWHIQGTCALKGDGLYEGLD-------WLASTLKEMR---------AAGYSSVGTSSF  193 (193)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~gi~~~~~-------~l~~~~~~~~---------~~~~~~~~~~~~  193 (193)
                      .    .+...+.++++.+.+...+..       ...+.+....         .-|.|++||||+
T Consensus        89 ~----~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSsl  148 (322)
T COG1161          89 E----EGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTL  148 (322)
T ss_pred             c----CCCccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHH
Confidence            3    144567788888877666553       2222222221         128999999974

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.21  E-value=1.7e-06  Score=68.34  Aligned_cols=53  Identities=19%  Similarity=0.221  Sum_probs=43.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcccccccccee--EEEEEEcCEEEEEEecCC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFN--VEKVQYKNVIFTVWDVGG   70 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~g   70 (193)
                      .+.|++||.||+||||+||+|.+........|.|-+  +.++.. .-.+.+.|+||
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-s~~v~LCDCPG  368 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-SPSVCLCDCPG  368 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-CCCceecCCCC
Confidence            589999999999999999999999988777777755  344433 45688999999

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.20  E-value=2.8e-05  Score=55.45  Aligned_cols=133  Identities=17%  Similarity=0.186  Sum_probs=71.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc----------------------cccccceeEEEEE-----------------E
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS----------------------TVPTIGFNVEKVQ-----------------Y   58 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~----------------------~~~t~~~~~~~~~-----------------~   58 (193)
                      ..++++|+.|+||||.+-+|.......                      +....++.+....                 .
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~   81 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK   81 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence            358899999999999988875421100                      0111122222111                 1


Q ss_pred             cCEEEEEEecCCCCCCHHhH----Hhhh--cCCCEEEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           59 KNVIFTVWDVGGQEKLRPLW----RHYF--NNTDGLIYVVDSLDRER-IGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~----~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      ++..+.++||+|........    ..++  ...+-+++|++++.... ++.+......+ .      . -=++.||.|..
T Consensus        82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-~------~-~~lIlTKlDet  153 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-G------I-DGLILTKLDET  153 (196)
T ss_dssp             TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-S------T-CEEEEESTTSS
T ss_pred             cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-c------C-ceEEEEeecCC
Confidence            24679999999977654332    1111  15789999999975432 22222222111 1      1 13669999976


Q ss_pred             CCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446          132 GAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       132 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      ..... -.+....+.        |+-.++  +|++|++
T Consensus       154 ~~~G~~l~~~~~~~~--------Pi~~it--~Gq~V~D  181 (196)
T PF00448_consen  154 ARLGALLSLAYESGL--------PISYIT--TGQRVDD  181 (196)
T ss_dssp             STTHHHHHHHHHHTS--------EEEEEE--SSSSTTG
T ss_pred             CCcccceeHHHHhCC--------CeEEEE--CCCChhc
Confidence            65321 223333333        555555  5666643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.16  E-value=2.9e-05  Score=52.84  Aligned_cols=58  Identities=17%  Similarity=0.142  Sum_probs=36.0

Q ss_pred             CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD  129 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  129 (193)
                      ...+.+.||+|.....   ..++..+|-++++..+.-.+.+.-+.-   .....      --++++||.|
T Consensus        91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~~~------~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA---GIMEI------ADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh---hHhhh------cCEEEEeCCC
Confidence            5689999998865322   236788999999988763222222211   11111      1379999998

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.15  E-value=6.7e-06  Score=62.15  Aligned_cols=56  Identities=20%  Similarity=0.135  Sum_probs=35.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccccc---------cceeEEEEEEcCEEEEEEecCCCCCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPT---------IGFNVEKVQYKNVIFTVWDVGGQEKL   74 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t---------~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (193)
                      -.++++|++|+|||||+|.+.+.........         +......+.... ...++||||..++
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCcc
Confidence            5789999999999999999998654322110         011111222221 2369999997654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.14  E-value=7.9e-06  Score=62.11  Aligned_cols=37  Identities=24%  Similarity=0.277  Sum_probs=26.9

Q ss_pred             hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc
Q 029446            4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL   43 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~   43 (193)
                      .+..+++...   .-.++++|++|+|||||+|.+.+....
T Consensus       154 gi~~L~~~l~---gk~~~~~G~sgvGKStlin~l~~~~~~  190 (298)
T PRK00098        154 GLDELKPLLA---GKVTVLAGQSGVGKSTLLNALAPDLEL  190 (298)
T ss_pred             cHHHHHhhcc---CceEEEECCCCCCHHHHHHHHhCCcCC
Confidence            3444444332   346899999999999999999976543

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.12  E-value=8.1e-05  Score=58.89  Aligned_cols=132  Identities=14%  Similarity=0.188  Sum_probs=71.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-----c----ccc---------------ccceeEEEE-----------EEcCE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-----S----TVP---------------TIGFNVEKV-----------QYKNV   61 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-----~----~~~---------------t~~~~~~~~-----------~~~~~   61 (193)
                      .-.++++|+.|+||||++..|.+....     .    ...               ..++.....           ...+.
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            458999999999999999987653110     0    000               111111111           11356


Q ss_pred             EEEEEecCCCCCCHHhH----Hhhh--cCCCEEEEEEECCC-hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446           62 IFTVWDVGGQEKLRPLW----RHYF--NNTDGLIYVVDSLD-RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM  134 (193)
Q Consensus        62 ~~~i~D~~g~~~~~~~~----~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  134 (193)
                      .+.++||+|........    ..+.  ....-.++|+|++. ...+..+   +..+..     -.+-=+++||.|.....
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~---~~~f~~-----~~~~~~I~TKlDEt~~~  342 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV---ISAYQG-----HGIHGCIITKVDEAASL  342 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH---HHHhcC-----CCCCEEEEEeeeCCCCc
Confidence            78999999976643221    2221  12456789999973 3333332   222211     11124789999977653


Q ss_pred             C-HhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446          135 T-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus       135 ~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      - .-.+....++        |+..++  +|++|
T Consensus       343 G~~l~~~~~~~l--------Pi~yvt--~Gq~V  365 (420)
T PRK14721        343 GIALDAVIRRKL--------VLHYVT--NGQKV  365 (420)
T ss_pred             cHHHHHHHHhCC--------CEEEEE--CCCCc
Confidence            2 2233333333        455554  67777

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.11  E-value=8.4e-05  Score=59.22  Aligned_cols=111  Identities=22%  Similarity=0.219  Sum_probs=62.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC----c-c-----cc-cc-----------ccceeEEEE---------------E
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGE----V-L-----ST-VP-----------TIGFNVEKV---------------Q   57 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~----~-~-----~~-~~-----------t~~~~~~~~---------------~   57 (193)
                      ..+..|+++|.+|+||||.+..+...-    . .     ++ -+           ..++.+...               .
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~  172 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK  172 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            346789999999999999988775310    0 0     00 00           011111110               0


Q ss_pred             EcCEEEEEEecCCCCCCHHhH------HhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCC
Q 029446           58 YKNVIFTVWDVGGQEKLRPLW------RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDM  130 (193)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl  130 (193)
                      .....+.++||+|........      ......+|.+++|+|++...   ........+..     ..+ .-+|.||.|.
T Consensus       173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~-----~l~i~gvIlTKlD~  244 (437)
T PRK00771        173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE-----AVGIGGIIITKLDG  244 (437)
T ss_pred             hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh-----cCCCCEEEEecccC
Confidence            013478999999976653321      11233689999999997643   22222233211     122 2478899997


Q ss_pred             CCC
Q 029446          131 KGA  133 (193)
Q Consensus       131 ~~~  133 (193)
                      ...
T Consensus       245 ~a~  247 (437)
T PRK00771        245 TAK  247 (437)
T ss_pred             CCc
Confidence            654

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.10  E-value=4.3e-05  Score=59.50  Aligned_cols=118  Identities=16%  Similarity=0.191  Sum_probs=65.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc---------cccc---------------cceeEEEEE-----------EcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS---------TVPT---------------IGFNVEKVQ-----------YKN   60 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~---------~~~t---------------~~~~~~~~~-----------~~~   60 (193)
                      ..-.++++|++|+||||++.+|.......         +..+               .++....+.           ..+
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~  215 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN  215 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence            34578999999999999999986531100         0001               122222111           135


Q ss_pred             EEEEEEecCCCCCCHHhHHhh---h---cCCCEEEEEEECCC-hhhHHHHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCC
Q 029446           61 VIFTVWDVGGQEKLRPLWRHY---F---NNTDGLIYVVDSLD-RERIGKAKQEFQAIIKDPFMLNS-VILVFANKQDMKG  132 (193)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~---~---~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~  132 (193)
                      ..+.++||+|...........   +   ..+.-.++|++++. .+.+.++...+..........-. +-=+|.||.|...
T Consensus       216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~  295 (374)
T PRK14722        216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS  295 (374)
T ss_pred             CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence            689999999977554432221   1   23455689999875 44444444444443221110001 1237779999776


Q ss_pred             C
Q 029446          133 A  133 (193)
Q Consensus       133 ~  133 (193)
                      .
T Consensus       296 ~  296 (374)
T PRK14722        296 N  296 (374)
T ss_pred             C
Confidence            4

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=5.1e-05  Score=66.53  Aligned_cols=110  Identities=17%  Similarity=0.191  Sum_probs=65.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCcc--ccc-----cccceeEEEEEEcCEEEEEEecCC----C----CCCHHhHHhh---
Q 029446           20 VVMLGLDAAGKTTILYKLHIGEVL--STV-----PTIGFNVEKVQYKNVIFTVWDVGG----Q----EKLRPLWRHY---   81 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~~~~--~~~-----~t~~~~~~~~~~~~~~~~i~D~~g----~----~~~~~~~~~~---   81 (193)
                      -+|+|++|+||||++.. .+-+|+  +..     ...+ +...--+-.-+-.++||.|    +    +.....|..+   
T Consensus       128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l  205 (1188)
T COG3523         128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL  205 (1188)
T ss_pred             eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence            58899999999998865 333333  111     1111 1111122345678999998    2    1233344433   


Q ss_pred             ------hcCCCEEEEEEECCCh-----h----hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           82 ------FNNTDGLIYVVDSLDR-----E----RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        82 ------~~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                            .+-.|++|+++|+.+.     .    -...+..-+.++... -....|+++++||.|+.+
T Consensus       206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence                  1358999999999642     1    112233445555443 225789999999999886

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.06  E-value=0.00013  Score=50.90  Aligned_cols=67  Identities=18%  Similarity=0.202  Sum_probs=39.4

Q ss_pred             CEEEEEEecCCCCCCHHhH----Hhhh--cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           60 NVIFTVWDVGGQEKLRPLW----RHYF--NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~----~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      ...+.+.|++|........    ..+.  ...+.+++|+|+.....   .......+.+..   + ..-+|.||.|....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~~  154 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDAR  154 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence            4568999999975432211    1111  24899999999864432   223333332221   1 24577799997764

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.06  E-value=4.7e-05  Score=59.44  Aligned_cols=136  Identities=16%  Similarity=0.123  Sum_probs=72.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc----------cc------------ccccceeEEEEEE--------------c
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL----------ST------------VPTIGFNVEKVQY--------------K   59 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~----------~~------------~~t~~~~~~~~~~--------------~   59 (193)
                      ....|+++|+.|+||||++..|...-..          ++            ....++.+.....              .
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~  319 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence            3468999999999999999998641110          00            0011222211100              1


Q ss_pred             CEEEEEEecCCCCCCHHh----HHhhh--cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           60 NVIFTVWDVGGQEKLRPL----WRHYF--NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      +..+.++||+|.......    ....+  ...+.+++|+|++-..  ..+...+..+...    + .-=+++||.|....
T Consensus       320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~-idglI~TKLDET~k  392 (436)
T PRK11889        320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----H-IDGIVFTKFDETAS  392 (436)
T ss_pred             CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----C-CCEEEEEcccCCCC
Confidence            358999999997653221    12222  2367889999985321  1222233333111    1 12478999997765


Q ss_pred             CCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446          134 MTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       134 ~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      .-. -.+....+.        |+..++  +|++|.+
T Consensus       393 ~G~iLni~~~~~l--------PIsyit--~GQ~VPe  418 (436)
T PRK11889        393 SGELLKIPAVSSA--------PIVLMT--DGQDVKK  418 (436)
T ss_pred             ccHHHHHHHHHCc--------CEEEEe--CCCCCCc
Confidence            322 234443433        444444  5666554

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.05  E-value=0.00016  Score=55.45  Aligned_cols=132  Identities=20%  Similarity=0.159  Sum_probs=72.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCcc-----------cc----------------ccccceeEEEEEE-------------c
Q 029446           20 VVMLGLDAAGKTTILYKLHIGEVL-----------ST----------------VPTIGFNVEKVQY-------------K   59 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~~~~-----------~~----------------~~t~~~~~~~~~~-------------~   59 (193)
                      .++-|--|||||||+|++......           +.                .-+.|+-.-++..             .
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~   83 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD   83 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence            467899999999999999874321           00                0011111111111             1


Q ss_pred             CEEEEEEecCCCCCCHHhHHhhhc--------CCCEEEEEEECCChhh-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHYFN--------NTDGLIYVVDSLDRER-IGKAKQEFQAIIKDPFMLNSVILVFANKQDM  130 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  130 (193)
                      .....++++.|-..=......+..        ..|+++-|+|+.+-.. .+.+.....+-+...      =++++||.|+
T Consensus        84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dl  157 (323)
T COG0523          84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDL  157 (323)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccC
Confidence            356678888884333222222211        3688999999975432 222333333333332      2899999999


Q ss_pred             CCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446          131 KGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      .++...+.+...+..   -+...+++.++.
T Consensus       158 v~~~~l~~l~~~l~~---lnp~A~i~~~~~  184 (323)
T COG0523         158 VDAEELEALEARLRK---LNPRARIIETSY  184 (323)
T ss_pred             CCHHHHHHHHHHHHH---hCCCCeEEEccc
Confidence            997543333333321   134456887776

>PRK10867 signal recognition particle protein; Provisional

Probab=98.03  E-value=0.00015  Score=57.78  Aligned_cols=78  Identities=17%  Similarity=0.145  Sum_probs=41.7

Q ss_pred             CEEEEEEecCCCCCCHHhHH----hh--hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           60 NVIFTVWDVGGQEKLRPLWR----HY--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      ...+.++||+|.........    .+  .-..+.+++|+|+...+   +.......+....   + ..-+|.||.|....
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~-i~giIlTKlD~~~r  255 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---G-LTGVILTKLDGDAR  255 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---C-CCEEEEeCccCccc
Confidence            46799999999654322111    11  12578889999986532   2223333332211   1 12467799996543


Q ss_pred             CC-HhHHHhhhC
Q 029446          134 MT-PMEVCEGLG  144 (193)
Q Consensus       134 ~~-~~~~~~~~~  144 (193)
                      .- ...+....+
T Consensus       256 gG~alsi~~~~~  267 (433)
T PRK10867        256 GGAALSIRAVTG  267 (433)
T ss_pred             ccHHHHHHHHHC
Confidence            22 233444444

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.03  E-value=3.7e-06  Score=64.59  Aligned_cols=55  Identities=18%  Similarity=0.315  Sum_probs=44.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE--EEEEcCEEEEEEecCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE--KVQYKNVIFTVWDVGG   70 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~g   70 (193)
                      .+.++++|+|-||+||||+||+|.....+..+++.|++-.  .+. -+..+.+.|.||
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~-Ldk~i~llDsPg  306 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK-LDKKIRLLDSPG  306 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee-ccCCceeccCCc
Confidence            4678999999999999999999999988877766666643  332 356789999999

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.00  E-value=5.7e-05  Score=57.89  Aligned_cols=66  Identities=18%  Similarity=0.254  Sum_probs=38.2

Q ss_pred             EEEEEEecCCCCCCHHhHHhhhc--------CCCEEEEEEECCChhhHH-HHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           61 VIFTVWDVGGQEKLRPLWRHYFN--------NTDGLIYVVDSLDRERIG-KAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      ....++++.|-..-..+...++.        ..+.++.|+|+.+-.... .......++ ...      =++++||+|+.
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi-~~A------D~IvlnK~Dl~  163 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV-GYA------DRILLTKTDVA  163 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH-HhC------CEEEEeccccC
Confidence            45688899997665554443322        258899999996422111 111111222 211      27999999998


Q ss_pred             CC
Q 029446          132 GA  133 (193)
Q Consensus       132 ~~  133 (193)
                      ++
T Consensus       164 ~~  165 (318)
T PRK11537        164 GE  165 (318)
T ss_pred             CH
Confidence            74

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.99  E-value=0.00011  Score=61.90  Aligned_cols=137  Identities=14%  Similarity=0.141  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc------cc------------------ccceeEEEE-----------EEcCEEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLST------VP------------------TIGFNVEKV-----------QYKNVIF   63 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~------~~------------------t~~~~~~~~-----------~~~~~~~   63 (193)
                      -++++|+.|+||||.+..+........      ..                  ..++.+...           ......+
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~  266 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL  266 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence            679999999999999999875321100      00                  001111110           1125589


Q ss_pred             EEEecCCCCCCHHhHH----hh--hcCCCEEEEEEECCC-hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH
Q 029446           64 TVWDVGGQEKLRPLWR----HY--FNNTDGLIYVVDSLD-RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP  136 (193)
Q Consensus        64 ~i~D~~g~~~~~~~~~----~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  136 (193)
                      .++||+|.........    ..  ....+-.++|+|++. .+.+.++...+......    + +-=+|+||.|.....-.
T Consensus       267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~----~-i~glIlTKLDEt~~~G~  341 (767)
T PRK14723        267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE----D-VDGCIITKLDEATHLGP  341 (767)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC----C-CCEEEEeccCCCCCccH
Confidence            9999999554332211    11  124667899999973 33344443333322100    1 12377999997765322


Q ss_pred             -hHHHhhhCCCcCCCCceEEEEeccccCCCH-HHHH
Q 029446          137 -MEVCEGLGLFDLKNRKWHIQGTCALKGDGL-YEGL  170 (193)
Q Consensus       137 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~  170 (193)
                       -.+....++        |+..++  +|++| +++.
T Consensus       342 iL~i~~~~~l--------PI~yit--~GQ~VPdDL~  367 (767)
T PRK14723        342 ALDTVIRHRL--------PVHYVS--TGQKVPEHLE  367 (767)
T ss_pred             HHHHHHHHCC--------CeEEEe--cCCCChhhcc
Confidence             233343333        555555  67777 4443

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.99  E-value=4.5e-06  Score=64.22  Aligned_cols=59  Identities=19%  Similarity=0.176  Sum_probs=45.1

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEE-EcCEEEEEEecCC
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQ-YKNVIFTVWDVGG   70 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~D~~g   70 (193)
                      ....+++-|.++|.||+||||+||.|..+..+..-|-.|.+-...- --..++.++|+||
T Consensus       302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPG  361 (572)
T KOG2423|consen  302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPG  361 (572)
T ss_pred             ccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCC
Confidence            4567889999999999999999999999988866555554432111 1245789999999

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.98  E-value=1.4e-05  Score=61.52  Aligned_cols=76  Identities=14%  Similarity=0.084  Sum_probs=51.3

Q ss_pred             EecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC
Q 029446           66 WDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG  144 (193)
Q Consensus        66 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  144 (193)
                      |+-.....|.......+..+|++|.|+|+.+|.+-..  ..++..+.... .++..|+|+||+|+++.+..+++...+.
T Consensus       128 ~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~--~~vE~~V~~~~-gnKkLILVLNK~DLVPrEv~e~Wl~YLr  203 (435)
T KOG2484|consen  128 DNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRC--PEVEEAVLQAH-GNKKLILVLNKIDLVPREVVEKWLVYLR  203 (435)
T ss_pred             cchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCC--hhHHHHHHhcc-CCceEEEEeehhccCCHHHHHHHHHHHH
Confidence            3333344566666777788999999999988754322  22333332211 3477999999999999877777776664

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.98  E-value=2.8e-05  Score=54.61  Aligned_cols=110  Identities=20%  Similarity=0.214  Sum_probs=63.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc----C--------Ccccc------ccccceeEEEEEE---------------------c
Q 029446           19 RVVMLGLDAAGKTTILYKLHI----G--------EVLST------VPTIGFNVEKVQY---------------------K   59 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~----~--------~~~~~------~~t~~~~~~~~~~---------------------~   59 (193)
                      -+++.|..|||||||++++..    +        ++.+.      ....+.....+..                     .
T Consensus         2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~   81 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY   81 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence            367899999999999999993    1        11100      0011222222211                     1


Q ss_pred             --CEEEEEEecCCCCCCHHhH---Hh--hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           60 --NVIFTVWDVGGQEKLRPLW---RH--YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        60 --~~~~~i~D~~g~~~~~~~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                        .....+.++.|...-....   ..  ..-..+.++.|+|+.+-.........+...+....      ++++||+|+.+
T Consensus        82 ~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~  155 (178)
T PF02492_consen   82 EERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVS  155 (178)
T ss_dssp             HGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHH
T ss_pred             CCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCC
Confidence              3567888998855444331   00  01247999999999664333444445555554432      89999999987


Q ss_pred             CC
Q 029446          133 AM  134 (193)
Q Consensus       133 ~~  134 (193)
                      ..
T Consensus       156 ~~  157 (178)
T PF02492_consen  156 DE  157 (178)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.97  E-value=3.3e-05  Score=43.00  Aligned_cols=45  Identities=22%  Similarity=0.369  Sum_probs=29.3

Q ss_pred             cCCCEEEEEEECCChh--hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 029446           83 NNTDGLIYVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQD  129 (193)
Q Consensus        83 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  129 (193)
                      +-.++++|++|++..+  +++.....+.++...  ..++|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence            3478999999998654  566666777777654  35899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>TIGR00959 ffh signal recognition particle protein

Probab=97.95  E-value=0.00012  Score=58.10  Aligned_cols=78  Identities=17%  Similarity=0.159  Sum_probs=42.8

Q ss_pred             CEEEEEEecCCCCCCHHhHHhh------hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHY------FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      ...+.++||||...........      .-..+.+++|+|+...+   ........+....   + ..=+|.||.|....
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~-i~giIlTKlD~~~~  254 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---G-LTGVVLTKLDGDAR  254 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---C-CCEEEEeCccCccc
Confidence            4679999999965443221111      12578899999987543   2333333332211   1 12477999996543


Q ss_pred             C-CHhHHHhhhC
Q 029446          134 M-TPMEVCEGLG  144 (193)
Q Consensus       134 ~-~~~~~~~~~~  144 (193)
                      . ....+....+
T Consensus       255 ~G~~lsi~~~~~  266 (428)
T TIGR00959       255 GGAALSVRSVTG  266 (428)
T ss_pred             ccHHHHHHHHHC
Confidence            2 2334444444

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.95  E-value=0.00011  Score=45.65  Aligned_cols=97  Identities=19%  Similarity=0.092  Sum_probs=57.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHh-HHhhhcCCCEEEEEEECCChh
Q 029446           20 VVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL-WRHYFNNTDGLIYVVDSLDRE   98 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~   98 (193)
                      +++.|..|+||||+...+...-..     .+.....++    .+.++|+++....... .......+|.++++++.... 
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~-   71 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL-   71 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-
Confidence            578899999999998887754322     122222222    8999999986654432 14445679999999988633 


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 029446           99 RIGKAKQEFQAIIKDPFMLNSVILVFAN  126 (193)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~p~ivv~n  126 (193)
                      +....................+..++.|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          72 AVLGARRLTEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence            3444433322222222223445555544

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.90  E-value=3.6e-05  Score=57.69  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ..+++|++|+|||||+|+|...
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~  187 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPE  187 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCch
Confidence            6788999999999999999874

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.90  E-value=0.00026  Score=56.42  Aligned_cols=135  Identities=19%  Similarity=0.224  Sum_probs=70.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc-------ccc--ccc---------------cceeEEEE-----------EEcCEEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV-------LST--VPT---------------IGFNVEKV-----------QYKNVIF   63 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~-------~~~--~~t---------------~~~~~~~~-----------~~~~~~~   63 (193)
                      .++++|+.|+||||++..|.....       ...  ..+               .++.+...           ......+
T Consensus       223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~Dl  302 (424)
T PRK05703        223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDV  302 (424)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCE
Confidence            789999999999998777643211       000  000               11111110           0125689


Q ss_pred             EEEecCCCCCCHH----hHHhhhc---CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-
Q 029446           64 TVWDVGGQEKLRP----LWRHYFN---NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-  135 (193)
Q Consensus        64 ~i~D~~g~~~~~~----~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-  135 (193)
                      .++||+|......    ....++.   ...-+++|++++-..  ..+.+.+..+..    .+ +-=++.||.|...... 
T Consensus       303 VlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~----~~-~~~vI~TKlDet~~~G~  375 (424)
T PRK05703        303 ILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSR----LP-LDGLIFTKLDETSSLGS  375 (424)
T ss_pred             EEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCC----CC-CCEEEEecccccccccH
Confidence            9999999765531    2233333   345678889986331  222233333211    11 1248899999765422 


Q ss_pred             HhHHHhhhCCCcCCCCceEEEEeccccCCCH-HHHH
Q 029446          136 PMEVCEGLGLFDLKNRKWHIQGTCALKGDGL-YEGL  170 (193)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~  170 (193)
                      ...+....+.        |+..++  +|++| +++.
T Consensus       376 i~~~~~~~~l--------Pv~yit--~Gq~VpdDl~  401 (424)
T PRK05703        376 ILSLLIESGL--------PISYLT--NGQRVPDDIK  401 (424)
T ss_pred             HHHHHHHHCC--------CEEEEe--CCCCChhhhh
Confidence            1223333332        555555  67776 4443

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.88  E-value=0.00019  Score=55.88  Aligned_cols=136  Identities=16%  Similarity=0.119  Sum_probs=71.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc----------cc------------ccccceeEEEEEE--------------c
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL----------ST------------VPTIGFNVEKVQY--------------K   59 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~----------~~------------~~t~~~~~~~~~~--------------~   59 (193)
                      ..-.++++|+.|+||||++..+......          ++            ....++.+.....              .
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~  284 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN  284 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence            3457899999999999999888642100          00            0011221111100              2


Q ss_pred             CEEEEEEecCCCCCCHHhH----Hhhhc--CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           60 NVIFTVWDVGGQEKLRPLW----RHYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      ...+.++||+|........    ..+..  ..+.+++|++++..  ...+...+..+.     .-.+--++.||.|....
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~-----~l~i~glI~TKLDET~~  357 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLA-----EIPIDGFIITKMDETTR  357 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcC-----cCCCCEEEEEcccCCCC
Confidence            4689999999976543322    22222  34677788876422  222222222221     11123578999997754


Q ss_pred             CC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446          134 MT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       134 ~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      .- .-.+....+.        |+..++  +|++|.+
T Consensus       358 ~G~~Lsv~~~tgl--------PIsylt--~GQ~Vpd  383 (407)
T PRK12726        358 IGDLYTVMQETNL--------PVLYMT--DGQNITE  383 (407)
T ss_pred             ccHHHHHHHHHCC--------CEEEEe--cCCCCCc
Confidence            32 2233444433        555555  5666664

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.85  E-value=0.00019  Score=53.62  Aligned_cols=133  Identities=17%  Similarity=0.116  Sum_probs=72.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------ccccccceeEEEEE--------------EcC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL----------------------STVPTIGFNVEKVQ--------------YKN   60 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~----------------------~~~~t~~~~~~~~~--------------~~~   60 (193)
                      .-+++++|++|+||||++..+......                      .+....++.+....              ...
T Consensus        75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence            369999999999999998877542110                      00111122221110              125


Q ss_pred             EEEEEEecCCCCCCHHh----HHhhh--cCCCEEEEEEECCC-hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           61 VIFTVWDVGGQEKLRPL----WRHYF--NNTDGLIYVVDSLD-RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        61 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      ..+.++||+|.......    +..++  ...+-+++|+|++. .....   .....+..     -.+-=++.||.|....
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~---~~~~~f~~-----~~~~~~I~TKlDet~~  226 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI---EIITNFKD-----IHIDGIVFTKFDETAS  226 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHH---HHHHHhCC-----CCCCEEEEEeecCCCC
Confidence            68999999997753222    11222  24677899999863 33222   23333211     1122488999997765


Q ss_pred             CCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446          134 MTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus       134 ~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      .-. -.+....+.        |+..++  +|+++.
T Consensus       227 ~G~~l~~~~~~~~--------Pi~~it--~Gq~vp  251 (270)
T PRK06731        227 SGELLKIPAVSSA--------PIVLMT--DGQDVK  251 (270)
T ss_pred             ccHHHHHHHHHCc--------CEEEEe--CCCCCC
Confidence            322 233333333        555454  566655

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.84  E-value=2.9e-05  Score=58.09  Aligned_cols=57  Identities=19%  Similarity=0.257  Sum_probs=40.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCc-----cccccccceeEEE---EEE-cCEEEEEEecCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV-----LSTVPTIGFNVEK---VQY-KNVIFTVWDVGG   70 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~-----~~~~~t~~~~~~~---~~~-~~~~~~i~D~~g   70 (193)
                      ....+.+.|+|-||+|||||||++.....     ...++..|++...   +.+ ..-.+.+.||||
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG  205 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG  205 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence            34789999999999999999998876432     2344445555432   333 345589999999

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.83  E-value=0.00014  Score=58.81  Aligned_cols=111  Identities=17%  Similarity=0.175  Sum_probs=61.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC--------cc--ccc--------------cccceeEEEEE-----------EcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGE--------VL--STV--------------PTIGFNVEKVQ-----------YKN   60 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~--------~~--~~~--------------~t~~~~~~~~~-----------~~~   60 (193)
                      ..-.++++|+.|+||||++..|....        ..  ...              ...++.+....           ...
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~  428 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD  428 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence            34588999999999999998886421        10  000              11122222211           135


Q ss_pred             EEEEEEecCCCCCCHHhHHhh---h--cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           61 VIFTVWDVGGQEKLRPLWRHY---F--NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~---~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      ..+.++||+|...........   +  ......++|++.+.  +...+...+..+..     ..+.-+|+||.|....
T Consensus       429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~~  499 (559)
T PRK12727        429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETGR  499 (559)
T ss_pred             CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCccc
Confidence            789999999965443221110   1  11345677888763  23333333333322     1345699999997554

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.82  E-value=0.00012  Score=55.58  Aligned_cols=141  Identities=16%  Similarity=0.170  Sum_probs=80.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC----cc------cc------------ccccceeEEE---------EE-----
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGE----VL------ST------------VPTIGFNVEK---------VQ-----   57 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~----~~------~~------------~~t~~~~~~~---------~~-----   57 (193)
                      ..+++-++++|-.|+||||-|-+|...-    ..      ++            ....|+.+..         +-     
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~  215 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ  215 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence            3468999999999999999988875411    00      00            1112222221         11     


Q ss_pred             ---EcCEEEEEEecCCCCCCHHhHHh-------hhcC-----CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEE
Q 029446           58 ---YKNVIFTVWDVGGQEKLRPLWRH-------YFNN-----TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL  122 (193)
Q Consensus        58 ---~~~~~~~i~D~~g~~~~~~~~~~-------~~~~-----~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i  122 (193)
                         ..++.+.+.||+|.-.-....-.       ..+.     .+-+++++|++-.+.--+....+.+....       -=
T Consensus       216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~G  288 (340)
T COG0552         216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DG  288 (340)
T ss_pred             HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ce
Confidence               13789999999995554332211       1222     33488888998655433333444454332       13


Q ss_pred             EEEeCCCCCCCC-CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446          123 VFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus       123 vv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      +++||.|....- ..-.+...++.        |+..+.  -|++++++..
T Consensus       289 iIlTKlDgtAKGG~il~I~~~l~~--------PI~fiG--vGE~~~DL~~  328 (340)
T COG0552         289 IILTKLDGTAKGGIILSIAYELGI--------PIKFIG--VGEGYDDLRP  328 (340)
T ss_pred             EEEEecccCCCcceeeeHHHHhCC--------CEEEEe--CCCChhhccc
Confidence            788999955432 12345555554        555555  5777777643

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.82  E-value=0.00013  Score=56.41  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .-.+|.|.-|||||||+|++...
T Consensus         5 pv~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         5 PVTIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhc
Confidence            34688999999999999999863

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.80  E-value=0.00014  Score=56.68  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=61.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-cccccc-----------------------ceeEEEE-----------EEcCE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTI-----------------------GFNVEKV-----------QYKNV   61 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~-----------------------~~~~~~~-----------~~~~~   61 (193)
                      .=.|++||+.|+||||-+.+|...-.- .....+                       ++....+           .....
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            457899999999999998877543220 000111                       1111111           11356


Q ss_pred             EEEEEecCCCCCCHHhHH----hhhcC--CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCCCCCC
Q 029446           62 IFTVWDVGGQEKLRPLWR----HYFNN--TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMKGA  133 (193)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~----~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~  133 (193)
                      .+.++||.|...+.....    .++..  ..-+.+|++++...  ..+...+..+.      ..|+ =++.||.|....
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~------~~~i~~~I~TKlDET~s  353 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFS------LFPIDGLIFTKLDETTS  353 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhc------cCCcceeEEEcccccCc
Confidence            899999999887755433    33232  34566788886332  22323333332      2222 377899997765

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.80  E-value=0.00014  Score=58.54  Aligned_cols=136  Identities=15%  Similarity=0.150  Sum_probs=70.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc---------ccc---------------cceeEEE-----------EEEcCEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLST---------VPT---------------IGFNVEK-----------VQYKNVI   62 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~---------~~t---------------~~~~~~~-----------~~~~~~~   62 (193)
                      --++++|+.|+||||.+..|........         ..+               .++....           ....+..
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d  336 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH  336 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence            4689999999999999999875321100         000               0111110           1112457


Q ss_pred             EEEEecCCCCCCHHh---HHhhhcC---CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-
Q 029446           63 FTVWDVGGQEKLRPL---WRHYFNN---TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-  135 (193)
Q Consensus        63 ~~i~D~~g~~~~~~~---~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-  135 (193)
                      +.++||+|.......   ....+..   ..-.++|+|++-..  ..+.+....+..    .+ .--+++||.|...... 
T Consensus       337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~-~~g~IlTKlDet~~~G~  409 (484)
T PRK06995        337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PG-LAGCILTKLDEAASLGG  409 (484)
T ss_pred             eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CC-CCEEEEeCCCCcccchH
Confidence            899999996543321   1111222   23478899996322  223222222211    11 2346789999765422 


Q ss_pred             HhHHHhhhCCCcCCCCceEEEEeccccCCCH-HHHH
Q 029446          136 PMEVCEGLGLFDLKNRKWHIQGTCALKGDGL-YEGL  170 (193)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~  170 (193)
                      .-.+....++        |+..++  +|++| +++.
T Consensus       410 ~l~i~~~~~l--------PI~yvt--~GQ~VPeDL~  435 (484)
T PRK06995        410 ALDVVIRYKL--------PLHYVS--NGQRVPEDLH  435 (484)
T ss_pred             HHHHHHHHCC--------CeEEEe--cCCCChhhhc
Confidence            2233343333        555555  67777 4443

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.76  E-value=0.00028  Score=53.09  Aligned_cols=115  Identities=10%  Similarity=0.083  Sum_probs=69.9

Q ss_pred             HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCC-----------
Q 029446            5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK-----------   73 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~-----------   73 (193)
                      +..++......+-..++++|++|-|||+++++|.........+.         .....+.+..+|....           
T Consensus        49 L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~  119 (302)
T PF05621_consen   49 LEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED---------AERIPVVYVQMPPEPDERRFYSAILEA  119 (302)
T ss_pred             HHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC---------CccccEEEEecCCCCChHHHHHHHHHH
Confidence            45566666666778999999999999999999997654322111         1123566666665111           


Q ss_pred             -------------CHHhHHhhhcCCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446           74 -------------LRPLWRHYFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQ  128 (193)
Q Consensus        74 -------------~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  128 (193)
                                   ........++...+=++++|=-+   ..+.......+.-+..-...-++|+|.||++-
T Consensus       120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE  190 (302)
T ss_pred             hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence                         12233456677888888988632   12233333333333332233678999998764

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK13695 putative NTPase; Provisional

Probab=97.74  E-value=0.00026  Score=49.46  Aligned_cols=22  Identities=32%  Similarity=0.517  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +++++.|.+|+|||||++.+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998654

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.71  E-value=0.00038  Score=44.19  Aligned_cols=81  Identities=15%  Similarity=0.114  Sum_probs=49.7

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCCccccccccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh
Q 029446           20 VVMLG-LDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   97 (193)
Q Consensus        20 v~v~G-~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (193)
                      |.+.| ..|+||||+...+...-...     +....-++. ....+.++|+|+.....  ....+..+|.++++++.+ .
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~-----~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~   73 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARR-----GKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-P   73 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhC-----CCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-H
Confidence            45666 56899999876665322211     111111111 11678999999975433  336678899999999886 4


Q ss_pred             hhHHHHHHHHH
Q 029446           98 ERIGKAKQEFQ  108 (193)
Q Consensus        98 ~s~~~~~~~~~  108 (193)
                      .++......+.
T Consensus        74 ~s~~~~~~~~~   84 (104)
T cd02042          74 LDLDGLEKLLE   84 (104)
T ss_pred             HHHHHHHHHHH
Confidence            45666555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.66  E-value=0.0011  Score=44.58  Aligned_cols=105  Identities=16%  Similarity=0.134  Sum_probs=60.0

Q ss_pred             EEcCCCCCHHHHHHHHhcCCccccccccceeEEE-EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhH
Q 029446           22 MLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEK-VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI  100 (193)
Q Consensus        22 v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~  100 (193)
                      .-|.+|+|||++.-.+...-...-..+.-++... ...-...+.++|+|+...  ......+..+|.++++.+.+ ..++
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~   81 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSI   81 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHH
Confidence            4578899999986555422111000000000000 000116789999998543  33456778999999999987 4445


Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446          101 GKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      ......+..+....  ...++.+|.|+.+-.
T Consensus        82 ~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~  110 (139)
T cd02038          82 TDAYALIKKLAKQL--RVLNFRVVVNRAESP  110 (139)
T ss_pred             HHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence            55444444443321  345678999999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.65  E-value=0.0015  Score=43.53  Aligned_cols=37  Identities=16%  Similarity=0.148  Sum_probs=26.6

Q ss_pred             HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446            6 RKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus         6 ~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      ..+.........-.+++.|++|+|||++++.+...-.
T Consensus         8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009           8 EALREALELPPPKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            3343333333456799999999999999999986543

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.65  E-value=6.9e-05  Score=49.61  Aligned_cols=25  Identities=28%  Similarity=0.301  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      --++|.|++|+|||++++++.....
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~~   29 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQLN   29 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHhH
Confidence            3478999999999999999987543

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.62  E-value=0.00045  Score=54.20  Aligned_cols=112  Identities=20%  Similarity=0.165  Sum_probs=66.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC----c------ccc------------ccccceeEEEEE--------------
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGE----V------LST------------VPTIGFNVEKVQ--------------   57 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~----~------~~~------------~~t~~~~~~~~~--------------   57 (193)
                      ...+..|+++|-.|+||||.+-.|...-    .      .++            ...+++.+....              
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~  176 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE  176 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence            3456789999999999999977765411    0      000            011122222110              


Q ss_pred             ---EcCEEEEEEecCCCCCCHHhHH------hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446           58 ---YKNVIFTVWDVGGQEKLRPLWR------HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ  128 (193)
Q Consensus        58 ---~~~~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  128 (193)
                         .....+.|+||+|.-......-      ...-+.|=+++|+|+.-.+.-.+....+.+.+...       =+|+||.
T Consensus       177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~it-------GvIlTKl  249 (451)
T COG0541         177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGIT-------GVILTKL  249 (451)
T ss_pred             HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCc-------eEEEEcc
Confidence               1256899999999665443321      11236899999999987665555545444443321       2677888


Q ss_pred             CCCC
Q 029446          129 DMKG  132 (193)
Q Consensus       129 Dl~~  132 (193)
                      |...
T Consensus       250 DGda  253 (451)
T COG0541         250 DGDA  253 (451)
T ss_pred             cCCC
Confidence            8654

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.00027  Score=54.60  Aligned_cols=111  Identities=20%  Similarity=0.214  Sum_probs=64.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC----cc------cc------------cccccee-EEE---------------
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGE----VL------ST------------VPTIGFN-VEK---------------   55 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~----~~------~~------------~~t~~~~-~~~---------------   55 (193)
                      +.++--|.++|..|+||||.+-+|....    ..      ++            ....++- |..               
T Consensus        98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~  177 (483)
T KOG0780|consen   98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD  177 (483)
T ss_pred             cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence            3455678999999999999987775310    00      00            0011111 111               


Q ss_pred             -EEEcCEEEEEEecCCCCCCHH-hHHh-----hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446           56 -VQYKNVIFTVWDVGGQEKLRP-LWRH-----YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ  128 (193)
Q Consensus        56 -~~~~~~~~~i~D~~g~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  128 (193)
                       ..-+...+.|.||.|.-.... +...     -.-+.|-+|+|.|++-.+.-......+.+....       --+++||.
T Consensus       178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdv-------g~vIlTKl  250 (483)
T KOG0780|consen  178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDV-------GAVILTKL  250 (483)
T ss_pred             HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhcc-------ceEEEEec
Confidence             112478999999999543322 1111     112589999999998776666655555555432       12556666


Q ss_pred             CCC
Q 029446          129 DMK  131 (193)
Q Consensus       129 Dl~  131 (193)
                      |..
T Consensus       251 DGh  253 (483)
T KOG0780|consen  251 DGH  253 (483)
T ss_pred             ccC
Confidence            654

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.56  E-value=0.0054  Score=48.34  Aligned_cols=133  Identities=17%  Similarity=0.175  Sum_probs=72.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCc---------c-----cc------------ccccceeEEEEE-----------Ec
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEV---------L-----ST------------VPTIGFNVEKVQ-----------YK   59 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~---------~-----~~------------~~t~~~~~~~~~-----------~~   59 (193)
                      .-.|+++|+.|+||||.+..+...-.         .     ++            ....++.+....           ..
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            45789999999999999888763210         0     00            001122221111           13


Q ss_pred             CEEEEEEecCCCCCCHH----hHHhhhcC--CC-EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           60 NVIFTVWDVGGQEKLRP----LWRHYFNN--TD-GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~----~~~~~~~~--~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                      +..+.++||+|......    .....+..  .+ -.++|+|++...  ..+...+......     .+-=+++||.|...
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~-----~~~~~I~TKlDet~  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF-----SYKTVIFTKLDETT  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC-----CCCEEEEEeccCCC
Confidence            67899999999665332    12223332  23 588999997542  2333333333211     12248899999776


Q ss_pred             CCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446          133 AMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus       133 ~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      ..-. -.+....+.        |+..++  +|++|
T Consensus       327 ~~G~~l~~~~~~~~--------Pi~yit--~Gq~v  351 (388)
T PRK12723        327 CVGNLISLIYEMRK--------EVSYVT--DGQIV  351 (388)
T ss_pred             cchHHHHHHHHHCC--------CEEEEe--CCCCC
Confidence            5322 233333333        444444  67777

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.56  E-value=0.00043  Score=53.69  Aligned_cols=112  Identities=17%  Similarity=0.162  Sum_probs=67.6

Q ss_pred             HHhHHhhhc---CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCC
Q 029446           75 RPLWRHYFN---NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNR  151 (193)
Q Consensus        75 ~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  151 (193)
                      ..+|...++   ..|++|-|+|+.+|-.  .-..-+...++. ..+.+-+|+|+||+||++.--...+...+...    +
T Consensus       201 kRIW~ELyKViDSSDVvvqVlDARDPmG--Trc~~ve~ylkk-e~phKHli~vLNKvDLVPtwvt~~Wv~~lSke----y  273 (572)
T KOG2423|consen  201 KRIWGELYKVIDSSDVVVQVLDARDPMG--TRCKHVEEYLKK-EKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKE----Y  273 (572)
T ss_pred             hHHHHHHHHhhcccceeEEeeeccCCcc--cccHHHHHHHhh-cCCcceeEEEeeccccccHHHHHHHHHHHhhh----C
Confidence            344544444   5899999999987633  222333444432 23567799999999999864445555555321    1


Q ss_pred             ceEEEEeccccCCCHHHHHHHHHHHHHhhh--------ccCCCCCCcCCC
Q 029446          152 KWHIQGTCALKGDGLYEGLDWLASTLKEMR--------AAGYSSVGTSSF  193 (193)
Q Consensus       152 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~--------~~~~~~~~~~~~  193 (193)
                      ----|..|.....|=-.+++.+.+...-..        .-|+|++|+||+
T Consensus       274 PTiAfHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSi  323 (572)
T KOG2423|consen  274 PTIAFHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSI  323 (572)
T ss_pred             cceeeehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHH
Confidence            001344566666776677776665443221        129999999974

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.56  E-value=0.00033  Score=48.78  Aligned_cols=65  Identities=17%  Similarity=0.121  Sum_probs=38.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ...-+.|+|.+|||||||++++......     .+.....+.+..-.+.+ |.+|.+.++.    .-.+|+.+++
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~-----~g~~vg~Ik~~~~~~~~-d~~g~Ds~~~----r~aGA~~v~~   69 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALCA-----RGIRPGLIKHTHHDMDV-DKPGKDSYEL----RKAGAAQTLV   69 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHhh-----cCCeEEEEEEcCCCccc-CCCCcHHHHH----HHhCCcEEEE
Confidence            3457899999999999999999855322     23344555443333333 6777443332    2245555553

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.53  E-value=8e-05  Score=48.66  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .|+|.|.+||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

...

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.53  E-value=0.00095  Score=42.69  Aligned_cols=100  Identities=15%  Similarity=0.095  Sum_probs=56.0

Q ss_pred             EcCCCCCHHHHHHHHhcCCccc-cccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHH
Q 029446           23 LGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG  101 (193)
Q Consensus        23 ~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~  101 (193)
                      -+..|+||||..-.+...-... ...+.-.+....  ....+.++|+|+.....  ....+..+|.++++.+.+ ..++.
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~--~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~s~~   80 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ--FGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LPSIR   80 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC--CCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hHHHH
Confidence            3567899999876664322111 101111100000  11279999999865433  345678899999999887 44555


Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEEEeC
Q 029446          102 KAKQEFQAIIKDPFMLNSVILVFANK  127 (193)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~p~ivv~nK  127 (193)
                      .....+..+..........+.+|+|+
T Consensus        81 ~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          81 NAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHcCCCCcCceEEEecC
Confidence            55555555443221113456677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.51  E-value=0.00046  Score=54.53  Aligned_cols=110  Identities=16%  Similarity=0.178  Sum_probs=59.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCc------c-----cc------------ccccceeEEEE----------EEcCEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEV------L-----ST------------VPTIGFNVEKV----------QYKNVIF   63 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~------~-----~~------------~~t~~~~~~~~----------~~~~~~~   63 (193)
                      ...++++|++|+||||++.+|.....      .     +.            ....++.....          ...+..+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            34688999999999999988864210      0     00            01112222111          0135688


Q ss_pred             EEEecCCCCCCHH-h---HHhhhc-----CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           64 TVWDVGGQEKLRP-L---WRHYFN-----NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        64 ~i~D~~g~~~~~~-~---~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      .++||+|...... .   +..+++     ...-.++|+|++...  +.+....... ..    -.+-=+|.||.|....
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDEt~~  374 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDEADF  374 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccCCCC
Confidence            9999999753221 1   122222     244688999997543  2222222222 11    1112488999997654

>PF05729 NACHT: NACHT domain

Probab=97.48  E-value=0.0011  Score=45.54  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCcc
Q 029446           20 VVMLGLDAAGKTTILYKLHIGEVL   43 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~~~~   43 (193)
                      +.|.|.+|+|||+++.++...-..
T Consensus         3 l~I~G~~G~GKStll~~~~~~~~~   26 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQLAE   26 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHHHHh
Confidence            689999999999999998864433

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.48  E-value=9.8e-05  Score=51.80  Aligned_cols=23  Identities=43%  Similarity=0.629  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ++|+|+|+|||||||+.+.+...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.0011  Score=53.02  Aligned_cols=109  Identities=17%  Similarity=0.196  Sum_probs=70.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC------------cccc---ccccceeEEEE--------------------EEcCEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE------------VLST---VPTIGFNVEKV--------------------QYKNVI   62 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~------------~~~~---~~t~~~~~~~~--------------------~~~~~~   62 (193)
                      =+..|+.+..-|||||..+|..+-            +.++   ....++++...                    +.+..-
T Consensus        20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL   99 (842)
T KOG0469|consen   20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL   99 (842)
T ss_pred             ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence            356778999999999999997531            1111   11112222210                    113678


Q ss_pred             EEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           63 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      +.++|.||+..|.+..-.+++-.|+++.|+|.-+.--.+. ...+.+.+.+    .+..+++.||.|..
T Consensus       100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~E----RIkPvlv~NK~DRA  163 (842)
T KOG0469|consen  100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAE----RIKPVLVMNKMDRA  163 (842)
T ss_pred             EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHHh----hccceEEeehhhHH
Confidence            9999999999999999999999999999999865321111 1222333322    23356899999953

>PRK08118 topology modulation protein; Reviewed

Probab=97.46  E-value=0.00011  Score=51.16  Aligned_cols=22  Identities=23%  Similarity=0.525  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +|+|+|++|||||||.+.+...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998864

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.45  E-value=0.003  Score=44.34  Aligned_cols=26  Identities=23%  Similarity=0.213  Sum_probs=22.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .=.++++|+.|+|||||++.+.+-..
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCC
Confidence            34789999999999999999887543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK07261 topology modulation protein; Provisional

Probab=97.44  E-value=0.00012  Score=51.06  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .+|+|+|.+|+|||||.+.+...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999998743

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.43  E-value=0.00028  Score=48.56  Aligned_cols=51  Identities=27%  Similarity=0.427  Sum_probs=33.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCH
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLR   75 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (193)
                      .+.++|.+|+|||||++++....     ...+.....+.+....+.+ |.+|...++
T Consensus         3 vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~   53 (159)
T cd03116           3 VIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKDSYR   53 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccchHHH
Confidence            57899999999999999998532     2334445555554444443 777754433

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.42  E-value=0.0012  Score=47.82  Aligned_cols=64  Identities=23%  Similarity=0.231  Sum_probs=39.3

Q ss_pred             EEEEEEecC-CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           61 VIFTVWDVG-GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        61 ~~~~i~D~~-g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      ..+.+.||- |-+.|   -+...+++|.++.|+|++. .++.... .+.++.+...  -.++.+|+||.|..
T Consensus       134 ~e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~-~sl~tae-ri~~L~~elg--~k~i~~V~NKv~e~  198 (255)
T COG3640         134 YEVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSY-KSLRTAE-RIKELAEELG--IKRIFVVLNKVDEE  198 (255)
T ss_pred             CcEEEEecccchhhh---ccccccCCCEEEEEeCCcH-HHHHHHH-HHHHHHHHhC--CceEEEEEeeccch
Confidence            466677764 33222   2334578999999999983 3444443 2333333321  37899999999955

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.39  E-value=0.00015  Score=48.82  Aligned_cols=20  Identities=25%  Similarity=0.497  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029446           20 VVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~   39 (193)
                      |+++|++|||||||++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999874

...

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.39  E-value=0.00019  Score=40.93  Aligned_cols=21  Identities=24%  Similarity=0.476  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..+|.|+.|+||||+++.+.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999988764

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.38  E-value=0.00071  Score=48.93  Aligned_cols=70  Identities=13%  Similarity=0.156  Sum_probs=39.3

Q ss_pred             CEEEEEEecCCCCCCHHh------HHhhhcCCCEEEEEEECC------ChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEe
Q 029446           60 NVIFTVWDVGGQEKLRPL------WRHYFNNTDGLIYVVDSL------DRERIGKA-KQEFQAIIKDPFMLNSVILVFAN  126 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~------~~~~~~~~d~~i~v~d~~------~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~n  126 (193)
                      .....++|+|||-++...      ....++..+.=+.++.+.      +|..|-.. .-.+...+.    -..|-|=|+.
T Consensus        96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVNvlS  171 (290)
T KOG1533|consen   96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVNVLS  171 (290)
T ss_pred             cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchhhhh
Confidence            557899999997764221      122334455555555443      44443332 222333332    3567788899


Q ss_pred             CCCCCCC
Q 029446          127 KQDMKGA  133 (193)
Q Consensus       127 K~Dl~~~  133 (193)
                      |+|+...
T Consensus       172 K~Dl~~~  178 (290)
T KOG1533|consen  172 KADLLKK  178 (290)
T ss_pred             HhHHHHh
Confidence            9998753

>PRK06851 hypothetical protein; Provisional

Probab=97.31  E-value=0.00093  Score=52.04  Aligned_cols=68  Identities=15%  Similarity=0.217  Sum_probs=44.1

Q ss_pred             hhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc----c-cc--ccccceeEEEEEEcCEEEEEEe-cCC
Q 029446            3 QAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV----L-ST--VPTIGFNVEKVQYKNVIFTVWD-VGG   70 (193)
Q Consensus         3 ~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~----~-~~--~~t~~~~~~~~~~~~~~~~i~D-~~g   70 (193)
                      +.|..+|+.......--+++-|.||+|||||++.+.....    . +.  .+.......-+-.....+-++| |+.
T Consensus        16 ~Gf~s~~~~~~~~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~slDgviip~l~~aivDgtap   91 (367)
T PRK06851         16 RGFYSLYDSIIDGANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGVIIPELKIAILDGTAP   91 (367)
T ss_pred             CchhhhhhhhccccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCceeeEEecCCCEEEEcCCCc
Confidence            4567788877655555689999999999999999764321    1 11  1222333444555677788888 443

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.29  E-value=0.00016  Score=49.94  Aligned_cols=22  Identities=36%  Similarity=0.520  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.28  E-value=0.00026  Score=41.51  Aligned_cols=21  Identities=29%  Similarity=0.398  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029446           20 VVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~   40 (193)
                      |++.|.+|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999998865

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.27  E-value=0.00028  Score=47.12  Aligned_cols=26  Identities=27%  Similarity=0.220  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL   43 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~   43 (193)
                      =.++|+|+.|+|||||++.+.+...+
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~~~   37 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLLPP   37 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred             CEEEEEccCCCccccceeeecccccc
Confidence            36899999999999999998876543

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK05439 pantothenate kinase; Provisional

Probab=97.26  E-value=0.0004  Score=52.89  Aligned_cols=35  Identities=17%  Similarity=0.128  Sum_probs=28.5

Q ss_pred             HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446            5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +..|+........+-|+|.|.+||||||+.+.+..
T Consensus        74 ~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~  108 (311)
T PRK05439         74 LEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA  108 (311)
T ss_pred             HHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            44555555667889999999999999999988875

>PRK01889 GTPase RsgA; Reviewed

Probab=97.23  E-value=0.00049  Score=53.67  Aligned_cols=25  Identities=36%  Similarity=0.464  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      -+++++|.+|+|||||+|.+.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            4789999999999999999997544

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.22  E-value=0.00046  Score=52.11  Aligned_cols=27  Identities=22%  Similarity=0.140  Sum_probs=22.6

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ....++-|+|.|++|||||||++.+.+
T Consensus        58 ~~~~p~IIGIaG~~GSGKSTlar~L~~   84 (290)
T TIGR00554        58 GAKIPYIISIAGSVAVGKSTTARILQA   84 (290)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            345679999999999999999987653

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.18  E-value=0.014  Score=40.57  Aligned_cols=66  Identities=11%  Similarity=-0.031  Sum_probs=43.7

Q ss_pred             EEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           62 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      .+.++|+|+.....  ....+..+|.++++++++. .++......+..+...   ......++.|+.|....
T Consensus        64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~  129 (179)
T cd02036          64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV  129 (179)
T ss_pred             CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCccccc
Confidence            79999999865432  3445688999999998873 3455554544444321   22346799999986543

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=97.16  E-value=0.00096  Score=45.86  Aligned_cols=52  Identities=25%  Similarity=0.295  Sum_probs=37.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHH
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP   76 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~   76 (193)
                      -+.++|..|+|||||+.++...-     ..-|..+..+.+.+-. --.|++|.+.++.
T Consensus         4 Il~ivG~k~SGKTTLie~lv~~L-----~~~G~rVa~iKH~hh~-~~~D~~GkDs~r~   55 (161)
T COG1763           4 ILGIVGYKNSGKTTLIEKLVRKL-----KARGYRVATVKHAHHD-FDLDKPGKDTYRH   55 (161)
T ss_pred             EEEEEecCCCChhhHHHHHHHHH-----HhCCcEEEEEEecCCC-CCCCCCCCccchh
Confidence            47899999999999999997432     2335566666665444 5578888777664

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.16  E-value=0.00036  Score=50.92  Aligned_cols=23  Identities=35%  Similarity=0.378  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      -|+++|++|||||||+|-+.+-.
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998743

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.11  E-value=0.00048  Score=46.39  Aligned_cols=23  Identities=35%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .|.|+|..|+|||||+..+.+.-
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998653

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.10  E-value=0.00046  Score=51.85  Aligned_cols=120  Identities=18%  Similarity=0.081  Sum_probs=67.2

Q ss_pred             EEEEecCCCC-CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh
Q 029446           63 FTVWDVGGQE-KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCE  141 (193)
Q Consensus        63 ~~i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  141 (193)
                      ...-+.||+. .--+.....+...|++|=+=|+.-|-|  .--..+.++.     ..+|-|+|.||+||.+..+...+.+
T Consensus        24 ~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLs--srn~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq   96 (335)
T KOG2485|consen   24 MPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLS--SRNELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQ   96 (335)
T ss_pred             CccccCchHHHHHHHHHHhhcccccEEEEeeccccCCc--cccHHHHHhc-----CCCceEEEEecccccCchhhhHHHH
Confidence            3344556654 233344556688999999999954433  2224445543     3678899999999999644444444


Q ss_pred             hhCCCcCCCCceEEEEeccccCCC--HHHHHH---HHHHHHHhhhc----------cCCCCCCcCCC
Q 029446          142 GLGLFDLKNRKWHIQGTCALKGDG--LYEGLD---WLASTLKEMRA----------AGYSSVGTSSF  193 (193)
Q Consensus       142 ~~~~~~~~~~~~~~~~~Sa~~~~g--i~~~~~---~l~~~~~~~~~----------~~~~~~~~~~~  193 (193)
                      .+.-.    ....++..++....+  +..++.   ++...+....+          -|-|++||||+
T Consensus        97 ~~~~~----~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsL  159 (335)
T KOG2485|consen   97 YLEWQ----NLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSL  159 (335)
T ss_pred             HHHhh----cccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHH
Confidence            33321    111233334333332  444444   44443333333          17899999974

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.10  E-value=0.00054  Score=49.35  Aligned_cols=26  Identities=19%  Similarity=0.231  Sum_probs=23.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .+.+.|+|.|.+|||||||.+.+...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999998764

>PRK03839 putative kinase; Provisional

Probab=97.09  E-value=0.00047  Score=48.45  Aligned_cols=23  Identities=30%  Similarity=0.328  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ++|+++|.+||||||+.+.+...
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998764

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.09  E-value=0.00046  Score=49.97  Aligned_cols=25  Identities=28%  Similarity=0.275  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL   43 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~   43 (193)
                      -|+|+|++|||||||+|-+.+-..+
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~p   57 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDKP   57 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccCC
Confidence            5799999999999999998764443

>PRK06217 hypothetical protein; Validated

Probab=97.09  E-value=0.00047  Score=48.61  Aligned_cols=23  Identities=30%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .+|+|+|.+||||||+.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998864

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.08  E-value=0.00048  Score=45.45  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 029446           20 VVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~~   41 (193)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999998653

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.07  E-value=0.00065  Score=47.62  Aligned_cols=28  Identities=25%  Similarity=0.286  Sum_probs=17.9

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ......-.++|.|++|+|||+|++++..
T Consensus        19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen   19 AQSGSPRNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             TSS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred             HHcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3455567899999999999999998764

>TIGR00235 udk uridine kinase

Probab=97.06  E-value=0.00058  Score=49.14  Aligned_cols=25  Identities=24%  Similarity=0.224  Sum_probs=22.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ....-|+|+|++|||||||++.+.+
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999975

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.05  E-value=0.00056  Score=44.94  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029446           20 VVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~   40 (193)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999865

...

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.05  E-value=0.00046  Score=50.56  Aligned_cols=29  Identities=28%  Similarity=0.399  Sum_probs=24.4

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .-...++++|+|.+|||||+|+..+....
T Consensus         9 l~~~~fr~viIG~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen    9 LLKDPFRMVIIGKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             hcCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            33577899999999999999999887543

This is thought to be an ATPase involved in viral DNA packaging [].

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.05  E-value=0.0044  Score=49.35  Aligned_cols=128  Identities=14%  Similarity=0.151  Sum_probs=75.3

Q ss_pred             HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHh----cCCccc------c-------------------cc-cccee--
Q 029446            5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLH----IGEVLS------T-------------------VP-TIGFN--   52 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~----~~~~~~------~-------------------~~-t~~~~--   52 (193)
                      ++.+.......++|-|.++|-.|+||||-+..++    .+.+.-      +                   .+ .++..  
T Consensus       366 LRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfek  445 (587)
T KOG0781|consen  366 LRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEK  445 (587)
T ss_pred             HHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhh
Confidence            4555566667799999999999999999876653    332210      0                   00 00000  


Q ss_pred             -EE------------EEEEcCEEEEEEecCCCCCCHHhHHhh------hcCCCEEEEEEECC-ChhhHHHHHHHHHHHHc
Q 029446           53 -VE------------KVQYKNVIFTVWDVGGQEKLRPLWRHY------FNNTDGLIYVVDSL-DRERIGKAKQEFQAIIK  112 (193)
Q Consensus        53 -~~------------~~~~~~~~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~  112 (193)
                       |.            .....+..+.+.||+|........-..      ....|.+++|-.+- .-++++.+..+-..+..
T Consensus       446 GYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~  525 (587)
T KOG0781|consen  446 GYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALAD  525 (587)
T ss_pred             hcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhc
Confidence             00            011136789999999966544332211      23689999997653 34556666555555444


Q ss_pred             CCCCCCCeEEEEEeCCCCCCC
Q 029446          113 DPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus       113 ~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      ....+.+. -++++|+|..++
T Consensus       526 ~~~~r~id-~~~ltk~dtv~d  545 (587)
T KOG0781|consen  526 HSTPRLID-GILLTKFDTVDD  545 (587)
T ss_pred             CCCccccc-eEEEEeccchhh
Confidence            32111222 378899998775

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.04  E-value=0.00096  Score=48.81  Aligned_cols=29  Identities=24%  Similarity=0.100  Sum_probs=24.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      ..+.+-|+|.|++|||||||++.+.+...
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            35789999999999999999999886443

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.03  E-value=0.00058  Score=47.46  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +|.+.|++|+||||+++++...
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~   22 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEE   22 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK08233 hypothetical protein; Provisional

Probab=97.03  E-value=0.0007  Score=47.44  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .+-|+|.|.+|||||||.+++...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            467889999999999999999754

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.02  E-value=0.00064  Score=48.06  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++|+|++|+|||||++.+.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999999764

>PHA00729 NTP-binding motif containing protein

Probab=97.02  E-value=0.0012  Score=47.89  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=27.0

Q ss_pred             HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446            6 RKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus         6 ~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ++..+.+....-.+|++.|+||+|||+|..++...
T Consensus         6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729          6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            44445455555679999999999999999988754

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.99  E-value=0.00061  Score=47.78  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++|+|++||||||+++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.98  E-value=0.00077  Score=44.55  Aligned_cols=27  Identities=22%  Similarity=0.207  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS   44 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~   44 (193)
                      -.++++|++|+|||+++..+.......
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            468999999999999999998765543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.96  E-value=0.00074  Score=45.31  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029446           20 VVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~   40 (193)
                      |+++|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.96  E-value=0.00077  Score=50.55  Aligned_cols=26  Identities=27%  Similarity=0.316  Sum_probs=22.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      ..-.|++.|++||||||+++.+....
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~~i  151 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLEEI  151 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred             cceEEEEECCCccccchHHHHHhhhc
Confidence            46799999999999999999998533

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.96  E-value=0.00067  Score=45.60  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=22.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +..++|+|.|-||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            6778999999999999999999874

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.96  E-value=0.00066  Score=48.45  Aligned_cols=21  Identities=24%  Similarity=0.279  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029446           20 VVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~   40 (193)
                      |+|.|++|||||||++.+.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK04195 replication factor C large subunit; Provisional

Probab=96.95  E-value=0.0081  Score=48.96  Aligned_cols=25  Identities=20%  Similarity=0.274  Sum_probs=21.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .-.+++.|++|+||||+++.+.+..
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4578999999999999999997643

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=96.94  E-value=0.025  Score=42.70  Aligned_cols=29  Identities=31%  Similarity=0.386  Sum_probs=23.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      ..+.+--++.|.-|+|||||+|.+..+..
T Consensus        54 ~~rIPvtIITGyLGaGKtTLLn~Il~~~h   82 (391)
T KOG2743|consen   54 GARIPVTIITGYLGAGKTTLLNYILTGQH   82 (391)
T ss_pred             CCccceEEEEecccCChHHHHHHHHccCC
Confidence            34556678899999999999999987543

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.92  E-value=0.001  Score=46.44  Aligned_cols=26  Identities=35%  Similarity=0.309  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL   43 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~   43 (193)
                      =.|+|+|++|+|||||+|-+.+-..+
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~~P   51 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFETP   51 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhccCC
Confidence            37899999999999999998875443

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.92  E-value=0.00083  Score=45.02  Aligned_cols=22  Identities=32%  Similarity=0.416  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3799999999999999988753

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK14530 adenylate kinase; Provisional

Probab=96.92  E-value=0.00078  Score=48.77  Aligned_cols=22  Identities=36%  Similarity=0.428  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998864

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.91  E-value=0.00094  Score=47.83  Aligned_cols=24  Identities=38%  Similarity=0.425  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .++++|++|||||||++.+.+=..
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcC
Confidence            678999999999999988765433

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.91  E-value=0.0015  Score=46.20  Aligned_cols=26  Identities=27%  Similarity=0.293  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      ..-.++++|+.|+|||||++.+.+-.
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45679999999999999999988643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK13949 shikimate kinase; Provisional

Probab=96.91  E-value=0.00085  Score=46.71  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +|+|+|.+||||||+.+.+...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988753

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.90  E-value=0.00092  Score=42.66  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=18.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHh
Q 029446           18 MRVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~   38 (193)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            357999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.89  E-value=0.00074  Score=49.09  Aligned_cols=21  Identities=29%  Similarity=0.219  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029446           20 VVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~   40 (193)
                      |+|.|++|||||||++.+.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            689999999999999998854

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=96.89  E-value=0.002  Score=51.04  Aligned_cols=51  Identities=25%  Similarity=0.302  Sum_probs=36.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCH
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLR   75 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (193)
                      -+.|+|..|+|||||+.++...-     ...|..+..+++....+. .|.+|.+.++
T Consensus         3 Vi~IvG~sgSGKTTLiekLI~~L-----~~rG~rVavIKH~hH~fd-~D~~GKDS~r   53 (452)
T PRK14495          3 VYGIIGWKDAGKTGLVERLVAAI-----AARGFSVSTVKHSHHDVD-PDPPGSDSHR   53 (452)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHH-----HhCCCeEEEEeccCcccC-CCCCCCCchh
Confidence            36899999999999999998432     234666777766555444 3788876665

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.89  E-value=0.001  Score=46.83  Aligned_cols=22  Identities=23%  Similarity=0.197  Sum_probs=19.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHh
Q 029446           17 EMRVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~   38 (193)
                      ...|+++|.+||||||+++.+.
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999999997

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=96.88  E-value=0.0096  Score=47.11  Aligned_cols=27  Identities=30%  Similarity=0.465  Sum_probs=22.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ......++|.|++|+|||++++.+...
T Consensus        52 ~~~~~~~lI~G~~GtGKT~l~~~v~~~   78 (394)
T PRK00411         52 GSRPLNVLIYGPPGTGKTTTVKKVFEE   78 (394)
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            345567999999999999999999864

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.87  E-value=0.001  Score=48.24  Aligned_cols=24  Identities=29%  Similarity=0.314  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .++|+|+.|+|||||++.+.+-..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCcC
Confidence            679999999999999999987543

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK06547 hypothetical protein; Provisional

Probab=96.87  E-value=0.0018  Score=45.22  Aligned_cols=27  Identities=30%  Similarity=0.388  Sum_probs=23.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ......|+|.|.+||||||+.+.+...
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            467788999999999999999999754

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.87  E-value=0.00095  Score=46.80  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|++||||||+++.+.+..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            47899999999999999998743

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.87  E-value=0.0012  Score=47.46  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=22.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .+..-++|+|++|||||||++.|...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            45567889999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		2e-65
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		1e-64
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		2e-63
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-63
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		6e-63
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		8e-63
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		7e-62
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		2e-61
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		2e-61
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		2e-61
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		2e-61
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		3e-61
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		4e-61
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		5e-61
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		7e-61
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		1e-60
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		4e-60
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		1e-58
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-58
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		3e-58
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		3e-58
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		6e-58
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		1e-55
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		2e-54
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		3e-53
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		9e-52
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		4e-47
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		5e-47
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		7e-45
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		5e-44
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		7e-44
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		1e-42
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		1e-42
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		3e-39
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		3e-39
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		1e-38
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		1e-37
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		2e-37
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		1e-36
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		1e-36
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		2e-36
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		5e-35
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		2e-33
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		1e-25
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-23
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		3e-23
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		2e-22
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		8e-20
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		1e-19
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		1e-19
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		2e-19
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		3e-17
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		5e-17
3ah8_A	355	Structure Of Heterotrimeric G Protein Galpha-Q Beta		5e-08
2bcj_Q	353	Crystal Structure Of G Protein-coupled Receptor Kin		5e-08
4ekc_A	347	Structure Of Human Regulator Of G Protein Signaling		6e-08
3ohm_A	327	Crystal Structure Of Activated G Alpha Q Bound To I		6e-08
4gnk_A	353	Crystal Structure Of Galphaq In Complex With Full-l		6e-08
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		3e-07
3c7k_A	333	Molecular Architecture Of Galphao And The Structura		3e-07
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		4e-07
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		5e-07
1svk_A	353	Structure Of The K180p Mutant Of Gi Alpha Subunit B		5e-07
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-06
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-06
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-06
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-06
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-06
1fqj_A	325	Crystal Structure Of The Heterotrimeric Complex Of		3e-06
3v00_C	356	Studies Of A Constitutively Active G-Alpha Subunit		3e-06
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		4e-06
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		4e-06
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-06
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		5e-06
1got_A	350	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		5e-06
4fmc_B	171	Espg-Rab1 Complex Length = 171		5e-06
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		5e-06
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		5e-06
3onw_A	328	Structure Of A G-Alpha-I1 Mutant With Enhanced Affi		5e-06
3d7m_A	354	Crystal Structure Of The G Protein Fast-Exchange Do		5e-06
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		5e-06
1kjy_A	325	Crystal Structure Of Human G[alpha]i1 Bound To The		6e-06
1y3a_A	329	Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe		6e-06
1gp2_A	353	G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi		6e-06
4g5o_A	330	Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length		6e-06
2gtp_A	323	Crystal Structure Of The Heterodimeric Complex Of H		6e-06
4g5q_A	330	Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330		6e-06
3qi2_A	328	A Galpha P-Loop Mutation Prevents Transition To The		6e-06
2ihb_A	323	Crystal Structure Of The Heterodimeric Complex Of H		6e-06
2ik8_A	324	Crystal Structure Of The Heterodimeric Complex Of H		6e-06
2xns_A	327	Crystal Structure Of Human G Alpha I1 Bound To A De		6e-06
3ffb_A	360	Crystal Structure Of A Fast Activating G Protein Mu		6e-06
3qe0_A	325	A Galpha-I1 P-Loop Mutation Prevents Transition To		6e-06
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-06
2g83_A	313	Structure Of Activated G-alpha-i1 Bound To A Nucleo		6e-06
4g5r_A	330	Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330		6e-06
1as0_A	353	Gtp-Gamma-S Bound G42v Gia1 Length = 353		6e-06
1shz_A	340	Crystal Structure Of The P115rhogef Rgrgs Domain In		6e-06
1bh2_A	315	A326s Mutant Of An Inhibitory Alpha Subunit Length		7e-06
2zjy_A	356	Structure Of The K349p Mutant Of Gi Alpha 1 Subunit		7e-06
2ode_A	350	Crystal Structure Of The Heterodimeric Complex Of H		8e-06
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		8e-06
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-05
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-05
4fmc_F	117	Espg-Rab1 Complex Length = 117		1e-05
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-05
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-05
1zcb_A	362	Crystal Structure Of G Alpha 13 In Complex With Gdp		2e-05
3ums_A	354	Crystal Structure Of The G202a Mutant Of Human G-Al		2e-05
1gg2_A	353	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-05
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-05
3cx7_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		3e-05
3umr_A	354	Crystal Structure Of The G202d Mutant Of Human G-Al		5e-05
1gil_A	353	Structure Of Active Conformations Of Gia1 And The M		5e-05
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		6e-05
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		7e-05
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		8e-05
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		8e-05
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		9e-05
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		1e-04
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-04
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-04
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-04
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-04
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-04
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-04
1tnd_A	324	The 2.2 Angstroms Crystal Structure Of Transducin-A		2e-04
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-04
3cx6_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		2e-04
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-04
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		3e-04
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-04
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		4e-04
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		4e-04
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		5e-04
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		5e-04
1azs_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		5e-04
1cul_C	380	Complex Of Gs-Alpha With The Catalytic Domains Of M		5e-04
3sn6_A	380	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-04
1cs4_C	394	Complex Of Gs-Alpha With The Catalytic Domains Of M		6e-04
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		6e-04
1cjk_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		6e-04
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		6e-04
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		7e-04
2xtz_A	354	Crystal Structure Of The G Alpha Protein Atgpa1 Fro		7e-04
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		7e-04
4fid_A	340	Crystal Structure Of A Heterotrimeric G-Protein Sub		8e-04
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		9e-04
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		9e-04

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score =  244 bits (623), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 108/181 (59%), Positives = 142/181 (78%)
Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG  F  LF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1   MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           +LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL++ L+  
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
Query: 181 R 181
           +
Sbjct: 181 K 181

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score =  242 bits (617), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 107/180 (59%), Positives = 141/180 (78%)
Query: 2   GQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNV 61
           G  F  LF   FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+
Sbjct: 1   GNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 60
Query: 62  IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI 121
            FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+
Sbjct: 61  SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 120
Query: 122 LVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
           LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL++ L+  +
Sbjct: 121 LVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 180

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 139/177 (78%)
Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG +F KLF   F   EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 4   MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 63
Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DR+R+ +A+ E   ++ +  + ++V
Sbjct: 64  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 123
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
           +LVFANKQD+  AM   E+ + LGL  L+ R W+IQ TCA  G+GLYEGLDWL++ +
Sbjct: 124 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 180

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score =  237 bits (605), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 106/178 (59%), Positives = 140/178 (78%)
Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG    KLF   FGN EMR++M+GLD AGKTT+LYKL +GEV++T+PTIGFNVE VQYKN
Sbjct: 1   MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKN 60
Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+++R LWRHY+ NT+G+I+V+DS DR RIG+A++  Q ++ +  + N+V
Sbjct: 61  ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAV 120
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
            LVFANKQD+  AM+  E+ E LGL  ++NR W IQ TCA  G+GLYEGL+WL++ LK
Sbjct: 121 WLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLK 178

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score =  236 bits (602), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 104/172 (60%), Positives = 138/172 (80%)
Query: 7   KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVW 66
           KLF   FGN EMR++M+GLD AGKTT+LYKL +GEV++T+PTIGFNVE VQYKN+ FTVW
Sbjct: 7   KLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVW 66
Query: 67  DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
           DVGGQ+++R LWRHY+ NT+G+I+VVDS DR RIG+A++  Q ++ +  + N+  LVFAN
Sbjct: 67  DVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFAN 126
Query: 127 KQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           KQD+  AM+  E+ E LGL  ++NR W IQ TCA  G+GLYEGL+WL+++LK
Sbjct: 127 KQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLK 178

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score =  236 bits (601), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 137/170 (80%)
Query: 12  FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQ 71
            FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 219
Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
           +K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+ 
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279
Query: 132 GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
            AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL++ L+  +
Sbjct: 280 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 329

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score =  233 bits (593), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 107/178 (60%), Positives = 138/178 (77%), Gaps = 4/178 (2%)
Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG    KL     G  EMR++M+GLDAAGKT+ILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 5   MGSWLSKLL----GKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHY+ NT  +I+VVDS DR+RIG+A++E   ++ +  M N++
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAI 120
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           +LVFANK D+  AM+  EV E LGL  +KNRKW+ Q +CA  GDGLYEGLDWLA  LK
Sbjct: 121 LLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNLK 178

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 104/172 (60%), Positives = 132/172 (76%)
Query: 7   KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVW 66
           K+    FGN EMR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VW
Sbjct: 3   KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 62
Query: 67  DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
           DVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FAN
Sbjct: 63  DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 127 KQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           KQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL S  K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 103/181 (56%), Positives = 139/181 (76%)
Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG    +LF+  F   ++R++M+GLDAAGKTTILYK+ +GEV++T+PTIGFNVE V+++N
Sbjct: 1   MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRN 60
Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHY++NTDGLI+VVDS DRERI  A++E   +I +  + +++
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAI 120
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           ILVFANKQD+  AM+  EV E L L  ++ R W IQ TCA +GDGLYEG DWL + L   
Sbjct: 121 ILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNNA 180
Query: 181 R 181
           +
Sbjct: 181 K 181

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 104/172 (60%), Positives = 132/172 (76%)
Query: 7   KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVW 66
           K+    FGN EMR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VW
Sbjct: 2   KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61
Query: 67  DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
           DVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FAN
Sbjct: 62  DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
Query: 127 KQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           KQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL S  K
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score =  231 bits (589), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 103/172 (59%), Positives = 136/172 (79%)
Query: 7   KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVW 66
           KLF   FGN EMR++M+GLD AGKTT+LYKL +GEV++T+PTIGFNVE VQY N+ FTVW
Sbjct: 7   KLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNISFTVW 66
Query: 67  DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
           DVGGQ+++R LWRHY+ NT+G+I+VVDS DR RIG+A++  Q ++ +  + N+  LVFAN
Sbjct: 67  DVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFAN 126
Query: 127 KQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           KQD+  AM+  E+ E LGL  ++NR W IQ TCA  G+GLYEGL+WL++ LK
Sbjct: 127 KQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNCLK 178

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score =  230 bits (587), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 100/164 (60%), Positives = 134/164 (81%)
Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
           MR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPL
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 78  WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
           WRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
           E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL++ L+  +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 164

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score =  230 bits (586), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 102/172 (59%), Positives = 137/172 (79%)
Query: 8   LFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWD 67
           LF   FG  +MR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWD
Sbjct: 20  LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWD 79
Query: 68  VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
           VGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ ++  E Q ++++  + ++V+LVFANK
Sbjct: 80  VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANK 139
Query: 128 QDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
           QDM  AM   E+ + LGL  L++R W++Q TCA +G GLY+GLDWL+  L +
Sbjct: 140 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score =  229 bits (585), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 103/179 (57%), Positives = 137/179 (76%)
Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG     LF   FG  +MR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 1   MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+++RPLW+HYF NT GLI+VVDS DRERI +   E Q ++    + ++V
Sbjct: 61  ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV 120
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
           +L+FANKQD+  AM   E+ + LGL  L+NR W++Q TCA +G GLYEGLDWL++ L +
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSK 179

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score =  229 bits (584), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 103/172 (59%), Positives = 130/172 (75%)
Query: 13  FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQE 72
             N EMR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+
Sbjct: 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQD 377
Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAG 184
           AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL S  K   AA 
Sbjct: 438 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLAAA 489

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score =  228 bits (581), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 103/172 (59%), Positives = 131/172 (76%)
Query: 7   KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVW 66
           K+    FGN EMR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VW
Sbjct: 3   KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 62
Query: 67  DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
           DVGG +K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FAN
Sbjct: 63  DVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 122
Query: 127 KQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           KQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL S  K
Sbjct: 123 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score =  227 bits (578), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 99/164 (60%), Positives = 133/164 (81%)
Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
           MR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGG +K+RPL
Sbjct: 3   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPL 62
Query: 78  WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
           WRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   
Sbjct: 63  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 122
Query: 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
           E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL++ L+  +
Sbjct: 123 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 166

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score =  222 bits (566), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 97/161 (60%), Positives = 131/161 (81%)
Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
           MR++M+GLD AGKTT+LYKL +GEV++T+PTIGFNVE VQYKN+ FTVWDVGGQ+++R L
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSL 60
Query: 78  WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
           WRHY+ NT+G+I+VVDS DR RIG+A++  Q ++ +  + N+  LVFANKQD+  AM+  
Sbjct: 61  WRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAA 120
Query: 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           E+ E LGL  ++NR W IQ TCA  G+GLYEGL+WL+++LK
Sbjct: 121 EITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLK 161

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 99/161 (61%), Positives = 126/161 (78%)
Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
           MR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPL
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 78  WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
           WRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P 
Sbjct: 61  WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           E+ E LGL  +++R W++Q +CA  GDGLYEGL WL S  K
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 161

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score =  221 bits (562), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 99/164 (60%), Positives = 127/164 (77%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
           EMR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGG +K+RP
Sbjct: 2   EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 61
Query: 77  LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
           LWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P
Sbjct: 62  LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 121
Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
            E+ E LGL  +++R W++Q +CA  GDGLYEGL WL S  K +
Sbjct: 122 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSL 165

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score =  220 bits (561), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 99/162 (61%), Positives = 126/162 (77%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
           EMR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGG +K+RP
Sbjct: 3   EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 62
Query: 77  LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
           LWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P
Sbjct: 63  LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 122
Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
            E+ E LGL  +++R W++Q +CA  GDGLYEGL WL S  K
Sbjct: 123 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 164

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score =  219 bits (559), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 98/158 (62%), Positives = 125/158 (79%)
Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
           MR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPL
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 78  WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
           WRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FANKQD+  AM P 
Sbjct: 61  WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 175
           E+ E LGL  +++R W++Q +CA  GDGLYEGL WL S
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 158

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score =  212 bits (539), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 95/160 (59%), Positives = 122/160 (76%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
           R++ LGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VWDVGGQ+K+RPLW
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 79  RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
           RHY+  T GLI+VVD  DR+RI +A+QE   II D    +++IL+FANKQD+  A  P E
Sbjct: 62  RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHE 121
Query: 139 VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           + E LGL  +++R W++Q +CA  GDGLYEGL WL S  K
Sbjct: 122 IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 161

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score =  208 bits (529), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 95/162 (58%), Positives = 125/162 (77%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
           EMR+++LGLD AGKTTILY+L +GEV++T+PTIGFNVE V YKN+ F VWD+GGQ  +RP
Sbjct: 2   EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRP 61
Query: 77  LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
            WR Y++NTD +IYVVDS DR+RIG +K E  A++++  +  ++++VFANKQDM+ AMTP
Sbjct: 62  YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTP 121
Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
            E+   LGL  LK+RKW I  T A KG GL E ++WL  TLK
Sbjct: 122 SEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 163

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 124/165 (75%)
Query: 14  GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK 73
           G  EMR+++LGLD AGKTTILY+L +GEV++T+PTIGFNVE V YKN+ F VWD+GG   
Sbjct: 1   GTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTS 60
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
           +RP WR Y++NTD +IYVVDS DR+RIG +K E  A++++  +  ++++VFANKQDM+ A
Sbjct: 61  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 120
Query: 134 MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           MT  E+   LGL  LK+RKW I  T A KG GL E ++WL  TLK
Sbjct: 121 MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 165

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score =  199 bits (505), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 129/180 (71%), Gaps = 1/180 (0%)
Query: 1   MGQAFRKLFDVFFG-NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYK 59
           MG  F  +FD  +G N E+R+++LGLD AGKTTILY+L IGEV++T PTIGFNVE + YK
Sbjct: 1   MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 60  NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS 119
           N+   VWD+GGQ  +RP WR Y+ +T  +I+VVDS D++R+  A +E   ++++  + ++
Sbjct: 61  NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 120 VILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
            +LVFANKQD  GA++  EV + L L +LK+R W I  + A+KG+G+ EGLDWL   +KE
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score =  183 bits (465), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/162 (55%), Positives = 117/162 (72%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
           E R+++LGLD AGKTTILY+L +GEV++T+PTIGFNVE V YKN+ F VWD+GG   +RP
Sbjct: 7   EXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRP 66
Query: 77  LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
            WR Y++NTD +IYVVDS DR+RIG +K E  A +++  +  ++++VFANKQD + A T 
Sbjct: 67  YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXTS 126
Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
            E    LGL  LK+RKW I  T A KG GL E  +WL  TLK
Sbjct: 127 SEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLK 168

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score =  183 bits (465), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG  F KL+   F N E +V+++GLD AGKTTILY+  + EV+ T PTIG NVE++  KN
Sbjct: 1   MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN 59
Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
             F +WD+GGQE LR  W  Y++NT+ +I VVDS+DRER+   K+E   ++    +  + 
Sbjct: 60  THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA 119
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
           +L+FANKQDMKG MT  E+ + L L  +K+  WHIQ  CAL G+GL +GL+W+ S +
Sbjct: 120 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score =  176 bits (446), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 86/176 (48%), Positives = 127/176 (72%)
Query: 4   AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIF 63
           + ++   +   + ++RV+MLGLD AGKT+ILY+LH+G+V++TVPT+G N+E +QYKN+ F
Sbjct: 9   SLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISF 68
Query: 64  TVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILV 123
            VWD+GGQ  +RP WR YF++TD +IYVVDS DR+R+G AK E  A++ +  +  S++L+
Sbjct: 69  EVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLI 128
Query: 124 FANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
           FANKQD+  A +  E+ E LG+  + NR W I  + +  GDGL EG+DWL   L+E
Sbjct: 129 FANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 82/178 (46%), Positives = 118/178 (66%), Gaps = 1/178 (0%)
Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG  F +++   F + E +V+++GLD AGKTTILY+  + EV+ T PTIG NVE++   N
Sbjct: 1   MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
             F +WD+GGQE LR  W  Y+ NT+ +I VVDS DRERI   ++E   ++    +  + 
Sbjct: 60  TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           +L+FANKQD+K  MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL+W+ S LK
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score =  173 bits (438), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 82/178 (46%), Positives = 119/178 (66%), Gaps = 1/178 (0%)
Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG  F +++ +F  + E +V+++GLD AGKTTILY+  + EV+ T PTIG NVE++   N
Sbjct: 1   MGILFTRIWRLF-NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
             F +WD+GGQE LR  W  Y+ NT+ +I VVDS DRERI   ++E   ++    +  + 
Sbjct: 60  TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           +L+FANKQD+K  MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL+W+ S LK
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 111/164 (67%)
Query: 14  GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK 73
           G+ E +V+++GLD AGKTTILY+  + EV+ T PTIG NVE++   N  F +WD+GGQE 
Sbjct: 18  GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES 77
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
           LR  W  Y+ NT+ +I VVDS DRERI   ++E   ++    +  + +L+FANKQD+K  
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 134 MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
           MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL+W+ S L
Sbjct: 138 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 111/165 (67%)
Query: 14  GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK 73
            + E +V+++GLD AGKTTILY+  + EV+ T PTIG NVE++   N  F +WD+GGQE 
Sbjct: 19  SHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES 78
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
           LR  W  Y+ NT+ +I VVDS DRERI   ++E   ++    +  + +L+FANKQD+K  
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 134 MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL+W+ S LK
Sbjct: 139 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 183

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 110/157 (70%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
           E+R++MLGLD AGKTTIL K +  +V +  PT+GFN++ ++++     +WDVGGQ+ LR 
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS 77
Query: 77  LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
            WR+YF +TDGLI+VVDS DR+R+   ++E Q+++ +  +  + +L+FANKQD+ GA++ 
Sbjct: 78  YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSX 137
Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
             + E L L  +++  W IQG  A+ G+ L  G+DWL
Sbjct: 138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 110/157 (70%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
           E+R++MLGLD AGKTTIL K +  +V +  PT+GFN++ ++++     +WDVGGQ+ LR 
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS 77
Query: 77  LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
            WR+YF +TDGLI+VVDS DR+R+   ++E Q+++ +  +  + +L+FANKQD+ GA++ 
Sbjct: 78  YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC 137
Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
             + E L L  +++  W IQG  A+ G+ L  G+DWL
Sbjct: 138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 110/157 (70%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
           E+R++MLGLD AGKTTIL K +  ++ +  PT+GFN++ ++++     +WDVGGQ+ LR 
Sbjct: 16  ELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS 75
Query: 77  LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
            WR+YF +TDGLI+VVDS DR+R+   ++E Q+++ +  +  + +L+FANKQD+ GA++ 
Sbjct: 76  YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSS 135
Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
             + E L L  +++  W IQG  A+ G+ L  G+DWL
Sbjct: 136 NAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWL 172

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 108/156 (69%)
Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
           +R++MLGLD AGKTTIL K +  +V +  PT+GFN++ ++++     +WDVGG + LR  
Sbjct: 2   LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSY 61
Query: 78  WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
           WR+YF +TDGLI+VVDS DR+R+   ++E Q+++ +  +  + +L+FANKQD+ GA++  
Sbjct: 62  WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN 121
Query: 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
            + E L L  +++  W IQG  A+ G+ L  G+DWL
Sbjct: 122 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 157

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 107/164 (65%)
Query: 14  GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK 73
           G SE+R+++LGLD AGKTT+L +L   ++    PT GFN++ VQ +     VWD+GGQ K
Sbjct: 1   GGSEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 60
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
           +RP WR YF NTD LIYV+DS DR+R  +  QE   ++++  +    +L+FANKQD+  A
Sbjct: 61  IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 120
Query: 134 MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
               E+ EGL L  +++R W IQ   AL G+G+ +G++W+   +
Sbjct: 121 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 106/163 (65%)
Query: 15  NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKL 74
           + E+R+++LGLD AGKTT+L +L   ++    PT GFN++ VQ +     VWD+GGQ K+
Sbjct: 15  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 74
Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134
           RP WR YF NTD LIYV+DS DR+R  +  QE   ++++  +    +L+FANKQD+  A 
Sbjct: 75  RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 134
Query: 135 TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
              E+ EGL L  +++R W IQ   AL G+G+ +G++W+   +
Sbjct: 135 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 177

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 106/163 (65%)
Query: 15  NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKL 74
           + E+R+++LGLD AGKTT+L +L   ++    PT GFN++ VQ +     VWD+GGQ K+
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 73
Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134
           RP WR YF NTD LIYV+DS DR+R  +  QE   ++++  +    +L+FANKQD+  A 
Sbjct: 74  RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133
Query: 135 TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
              E+ EGL L  +++R W IQ   AL G+G+ +G++W+   +
Sbjct: 134 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 106/164 (64%)
Query: 14  GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK 73
           G SE+R+++LGLD AGKTT+L +L   ++    PT GFN++ VQ +     VWD+GG  K
Sbjct: 1   GGSEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRK 60
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
           +RP WR YF NTD LIYV+DS DR+R  +  QE   ++++  +    +L+FANKQD+  A
Sbjct: 61  IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 120
Query: 134 MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
               E+ EGL L  +++R W IQ   AL G+G+ +G++W+   +
Sbjct: 121 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score =  143 bits (361), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 100/148 (67%)
Query: 26  DAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNT 85
           D AGKTTIL K +  +V +  PT+GFN++ ++++     +WDVGGQ+ LR  WR+YF +T
Sbjct: 27  DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 86  DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL 145
           DGLI+VVDS DR+R    ++E Q+++ +  +  + +L+FANKQD+ GA++   + E L L
Sbjct: 87  DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
Query: 146 FDLKNRKWHIQGTCALKGDGLYEGLDWL 173
             +++  W IQG  A+ G+ L  G+DWL
Sbjct: 147 DSIRSHHWRIQGCSAVTGEDLLPGIDWL 174

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 14  GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST--VPTIGFNVEKVQYKNVIFTVWDVGGQ 71
           G+ E+ V+ LGLD +GKTTI+ KL      S   +PTIGF++EK +  ++ FTV+D+ GQ
Sbjct: 18  GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQ 77
Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS--VILVFANKQD 129
            + R LW HY+     +I+V+DS DR R+  AK+E   ++  P + +    IL FANK D
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMD 137
Query: 130 MKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 182
           ++ A+T ++V + L L ++K++ WHI  + A+KG+GL EG+DWL   ++ ++ 
Sbjct: 138 LRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTVKT 190

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 10/171 (5%)
Query: 16  SEMRVVMLGLDAAGKTTILYKLHIGEVLST--VPTIGFNVEKVQYKNVIFTVWDVGGQEK 73
           ++++VVM GLD +GKTTI+ ++   +  S     T+G+NVE  +   V FTV+D+GG +K
Sbjct: 16  TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKK 75
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-------ILVFAN 126
            R LW  Y++N D +I+VVDS D  R+   K E QA++K   +   +        L FAN
Sbjct: 76  FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFAN 135
Query: 127 KQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLAST 176
           K D  GA T  E+ E L L  L  +  + I  +  LKG G++EG  WL  T
Sbjct: 136 KMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQET 186

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 88/166 (53%), Gaps = 1/166 (0%)
Query: 9   FDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIGFNVEKVQYKNVIFTVWD 67
           F   F   EM + ++GL  +GKTT +  +  G+     +PT+GFN+ K+   NV   +WD
Sbjct: 23  FKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWD 82
Query: 68  VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
           +GGQ + R +W  Y      ++Y+VD+ D+E+I  +K E   ++  P +    +LV  NK
Sbjct: 83  IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 142
Query: 128 QDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
           +D+ GA+   E+ E + L  +++R+         + D +   L WL
Sbjct: 143 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 188

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 1/167 (0%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLR 75
           EM + ++GL  +GKTT +  +  G+     +PT+GFN+ K+   NV   +WD+GGQ + R
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFR 81
Query: 76  PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT 135
            +W  Y      ++Y+VD+ D+E+I  +K E   ++  P +    +LV  NK+D+ GA+ 
Sbjct: 82  SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD 141
Query: 136 PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 182
             E+ E + L  +++R+         + D +   L WL    K  R+
Sbjct: 142 EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRRS 188

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 86/158 (54%), Gaps = 1/158 (0%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLR 75
           EM + ++GL  +GKTT +  +  G+     +PT+GFN+ KV   NV   +WD+GGQ + R
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFR 81
Query: 76  PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT 135
            +W  Y    + ++Y++D+ DRE+I  ++ E   ++  P +    +LV  NK+D+  A+ 
Sbjct: 82  SMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALD 141
Query: 136 PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
             ++ E + L  +++R+         + D +   L WL
Sbjct: 142 EKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 12/168 (7%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
           ++V LGLD AGKTT+L+ L    +   VPT+    E++    + FT +D+GG E+ R +W
Sbjct: 37  KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVW 96
Query: 79  RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
           ++Y    +G++++VD  D  R+ ++K E  A++ D  + N  IL+  NK D   A++  +
Sbjct: 97  KNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEK 156
Query: 139 VCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 174
           + E  GL+            +L  R   +     LK  G  EG  WL+
Sbjct: 157 LREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLS 204

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 12/168 (7%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
           ++V LGLD AGKTT+L+ L    +   VPT+    E++    + FT +D+GG  + R +W
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVW 86
Query: 79  RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
           ++Y    +G++++VD  D ER+ ++K+E  +++ D  + N  IL+  NK D   A++   
Sbjct: 87  KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEER 146
Query: 139 VCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 174
           + E  GL+            +L  R   +     LK  G  EG  W+A
Sbjct: 147 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 12/168 (7%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
           ++V LGLD AGKTT+L+ L    +   VPT+    E++    + FT +D+GG  + R +W
Sbjct: 24  KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVW 83
Query: 79  RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
           ++Y    +G++++VD  D ER+ ++K+E  +++ D  + N  IL+  NK D   A++   
Sbjct: 84  KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEER 143
Query: 139 VCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 174
           + E  GL+            +L  R   +     LK  G  EG  W+A
Sbjct: 144 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 191

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 12/168 (7%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
           ++V LGLD AGKTT+L+ L    +   VPT+    E++    + FT +D+GG  + R +W
Sbjct: 18  KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQARRVW 77
Query: 79  RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
           ++Y    +G++++VD  D ER+ ++K+E  +++ D  + N  IL+  NK D   A++   
Sbjct: 78  KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEER 137
Query: 139 VCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLA 174
           + E  GL+            +L  R   +     LK  G  EG  W+A
Sbjct: 138 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 185

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 15  NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKL 74
           N   +++ LGLD AGKTT+L+ L    + +  PT     E++   N+ FT +D+GG  + 
Sbjct: 21  NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQA 80
Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134
           R LW+ YF   +G++++VD+ D ER  +A+ E  A+     + +   ++  NK D   A+
Sbjct: 81  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 140
Query: 135 TPMEVCEGLGLFDLKNRKWHIQGT-------CA-LKGDGLYEGLDWLAS 175
           +  E+   LGL +    +  I+G        C+ +  +G  E   WL+ 
Sbjct: 141 SEAELRSALGLLNTTGSQ-RIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 9/165 (5%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
           +++ LGLD AGKTT+L+ L    + +  PT     E++   N+ FT +D+GG  + R LW
Sbjct: 3   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 62
Query: 79  RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
           + YF   +G++++VD+ D ER  +A+ E  A+     + +   ++  NK D   A++  E
Sbjct: 63  KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 122
Query: 139 VCEGLGLFDLKNRKWHIQGT-------CA-LKGDGLYEGLDWLAS 175
           +   LGL +    +  I+G        C+ +  +G  E   WL+ 
Sbjct: 123 LRSALGLLNTTGSQ-RIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 166

>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In Complex With An Inhibitor Ym-254890 Length = 355

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 46  VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSL 95
           VPT G        ++VIF + DVGGQ   R  W H F N   +++          +V+S 
Sbjct: 180 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 239
Query: 96  DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
           +  R+ ++K  F+ II  P+  NS +++F NK+D+
Sbjct: 240 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 274

>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 353

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 46  VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSL 95
           VPT G        ++VIF + DVGGQ   R  W H F N   +++          +V+S 
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 96  DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
           +  R+ ++K  F+ II  P+  NS +++F NK+D+
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272

>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 347

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 46  VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSL 95
           VPT G        ++VIF + DVGGQ   R  W H F N   +++          +V+S 
Sbjct: 172 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 231
Query: 96  DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
           +  R+ ++K  F+ II  P+  NS +++F NK+D+
Sbjct: 232 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266

>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 327

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 46  VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSL 95
           VPT G        ++VIF + DVGGQ   R  W H F N   +++          +V+S 
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211
Query: 96  DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
           +  R+ ++K  F+ II  P+  NS +++F NK+D+
Sbjct: 212 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246

>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 353

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 46  VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSL 95
           VPT G        ++VIF + DVGGQ   R  W H F N   +++          +V+S 
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 96  DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
           +  R+ ++K  F+ II  P+  NS +++F NK+D+
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 19  RVVMLGLDAAGKTTILYKL----HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVGGQE 72
           +++++G    GK+ +L +     +  + +ST+  + F ++ V+   K V   +WD  GQE
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG-VDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMK 131
           + R +   Y+  + G+I V D  D+E     K   Q I  D +  ++V+ L+  NK D+K
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLK 126

>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV-----DS 94
           ++L T V T G       +KN+ F ++DVGGQ   R  W H F +   +I+ V     D 
Sbjct: 153 DILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQ 212
Query: 95  LDRE-----RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA---MTPMEVC 140
           +  E     R+ ++   F +I  + F +++ I++F NK+D+ G     +P+ +C
Sbjct: 213 VLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTIC 266

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 19  RVVMLGLDAAGKTTILYKL----HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVGGQE 72
           +++++G    GK+ +L +     +  + +ST+  + F ++ V+   K V   +WD  GQE
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG-VDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMK 131
           + R +   Y+  + G+I V D  D+E     K   Q I  D +  ++V+ L+  NK D+K
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLK 126

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 19  RVVMLGLDAAGKTTILYKL----HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVGGQE 72
           +++++G    GK+ +L +     +  + +ST+  + F ++ V+   K V   +WD  GQE
Sbjct: 23  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG-VDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMK 131
           + R +   Y+  + G+I V D  D+E     K   Q I  D +  ++V+ L+  NK D+K
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLK 139

>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T VPT G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 172 DVLRTRVPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 13  FGNSEMRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWD 67
            G+S M+++++G    GK+ +L +           T   I F ++ V    K V   +WD
Sbjct: 3   LGSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 62
Query: 68  VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 127
             GQE+ R +   Y+    G+I V D  D       KQ F+  + +     + +L+  NK
Sbjct: 63  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHANDEAQLLLVGNK 121
Query: 128 QDMKGAMTPMEVCEGLG 144
            DM+  +   +  E L 
Sbjct: 122 SDMETRVVTADQGEALA 138

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQYKN--VIFTVWDVGGQEK 73
           +++++G    GK+ +L +        S + TIG  F +  +  +N  V   +WD  GQE+
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDM 130
            R +   Y+    G+I V D  DR+     KQ  Q I  D + + +V  L+  NK D+
Sbjct: 71  FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEI--DRYAMENVNKLLVGNKCDL 126

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIG--FNVEKVQYKNVI--FTVWDVGGQ 71
           E++V +LG    GK++I+++         + PTIG  F  + VQY+N +  F +WD  GQ
Sbjct: 5   ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQ 64
Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDM 130
           E+ R L   Y+  +   I V D    E     K   + + +  P  +  V+ +  NK D+
Sbjct: 65  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSI--VVAIAGNKCDL 122
Query: 131 KGAMTPME 138
                 ME
Sbjct: 123 TDVREVME 130

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           +++++G    GK+ +L +        S + TIG  F +  ++   K +   +WD  GQE+
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
            R +   Y+    G+I V D  D+E     KQ  Q I  D +   +V  L+  NK D+  
Sbjct: 71  FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVGNKSDLTT 128
Query: 133 A-----MTPMEVCEGLGL 145
                  T  E  + LG+
Sbjct: 129 KKVVDNTTAKEFADSLGI 146

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           +++++G    GK+ +L +        S + TIG  F +  ++   K +   +WD  GQE+
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
            R +   Y+    G+I V D  D+E     KQ  Q I  D +   +V  L+  NK D+  
Sbjct: 71  FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVGNKSDLTT 128
Query: 133 A-----MTPMEVCEGLGL 145
                  T  E  + LG+
Sbjct: 129 KKVVDNTTAKEFADSLGI 146

>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 44  STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----- 98
           S V T G    +  +K++ F ++DVGGQ   R  W H F     +I+ V   D +     
Sbjct: 148 SRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 207
Query: 99  -----RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 208 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 257

>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 44  STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----- 98
           S V T G    +  +K++ F ++DVGGQ   R  W H F     +I+ V   D +     
Sbjct: 179 SRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 238
Query: 99  -----RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                R+ ++   F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 239 DEEMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 288

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           +++++G    GK+ +L +        S + TIG  F +  ++   K +   +WD  GQE+
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
            R +   Y+    G+I V D  D+E     KQ  Q I  D +   +V  L+  NK D+  
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 118
Query: 133 A-----MTPMEVCEGLGL 145
                  T  E  + LG+
Sbjct: 119 KKVVDYTTAKEFADSLGI 136

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 13/139 (9%)
Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQE 72
            +++++G    GK+ +L +        S + TIG  F +  ++   K +   +WD  GQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMK 131
           + R +   Y+    G+I V D  D+E     KQ  Q I  D +   +V  L+  NK D+ 
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 151
Query: 132 GA-----MTPMEVCEGLGL 145
                   T  E  + LG+
Sbjct: 152 TKKVVDYTTAKEFADSLGI 170

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           +++++G    GK+ +L +        S + TIG  F +  ++   K +   +WD  GQE+
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
            R +   Y+    G+I V D  D+E     KQ  Q I  D +   +V  L+  NK D+  
Sbjct: 68  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 125
Query: 133 A-----MTPMEVCEGLGL 145
                  T  E  + LG+
Sbjct: 126 KKVVDYTTAKEFADSLGI 143

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 12  FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFNVEK----VQYKNVIFTVW 66
           F      ++V+ G  A GK++ L +L   E    +  T+G + +     V  +  +  +W
Sbjct: 23  FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82
Query: 67  DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
           D  GQE+ R + + YF   DG++ + D +  E+     +E+  +I+D       I++  N
Sbjct: 83  DTAGQERFRSIAKSYFRKADGVLLLYD-VTCEKSFLNIREWVDMIEDAAHETVPIMLVGN 141
Query: 127 KQDMKG-AMTPMEVC 140
           K D++  A T  + C
Sbjct: 142 KADIRDTAATEGQKC 156

>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 44  STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------D 93
           S V T G    +  +K++ F  +DVGGQ   R  W H F     +I+ V          +
Sbjct: 173 SRVKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 232
Query: 94  SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
             +  R  ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 233 DEEXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 282

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           +++++G    GK+ +L +        S + TIG  F +  ++   K +   +WD  GQE+
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
            R +   Y+    G+I V D  D+E     KQ  Q I  D +   +V  L+  NK D+  
Sbjct: 68  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 125
Query: 133 A-----MTPMEVCEGLGL 145
                  T  E  + LG+
Sbjct: 126 KKVVDYTTAKEFADSLGI 143

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           +++++G    GK+ +L +        S + TIG  F +  ++   K +   +WD  GQE+
Sbjct: 27  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
            R +   Y+    G+I V D  D+E     KQ  Q I  D +   +V  L+  NK D+  
Sbjct: 87  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 144
Query: 133 A-----MTPMEVCEGLGL 145
                  T  E  + LG+
Sbjct: 145 KKVVDYTTAKEFADSLGI 162

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Query: 15  NSEMRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVG 69
           +S M+++++G    GK+ +L +           T   I F ++ V    K V   +WD  
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70  GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
           GQE+ R +   Y+    G+I V D  D       KQ F+  + +     + +L+  NK D
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT-VNEHANDEAQLLLVGNKSD 119
Query: 130 MKGAMTPMEVCEGLG 144
           M+  +   +  E L 
Sbjct: 120 METRVVTADQGEALA 134

>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 147 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 206
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 207 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 260

>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 173 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 232
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 233 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 286

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           +++++G    GK+ +L +        S + TIG  F +  ++   K +   +WD  GQE+
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
            R +   Y+    G+I V D  D+E     KQ  Q I  D +   +V  L+  NK D+  
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 135
Query: 133 A-----MTPMEVCEGLGL 145
                  T  E  + LG+
Sbjct: 136 KKVVDYTTAKEFADSLGI 153

>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 144 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 203
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 204 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 257

>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 148 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 207
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 208 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 261

>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 172 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285

>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 149 DVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 208
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +   + I++F NK+D+   K   +P+ +C
Sbjct: 209 VLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 262

>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 142 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 201
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 202 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 255

>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 149 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 208
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 209 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 262

>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 147 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 206
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 207 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 260

>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 142 DVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 201
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +   + I++F NK+D+   K   +P+ +C
Sbjct: 202 VLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 255

>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 143 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 202
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 203 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 256

>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 146 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 205
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 206 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 259

>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 144 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 203
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 204 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 257

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Query: 15  NSEMRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVG 69
           +S M+++++G    GK+ +L +           T   I F ++ V    K V   +WD  
Sbjct: 18  DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 77
Query: 70  GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
           GQE+ R +   Y+    G+I V D  D       KQ F+  + +     + +L+  NK D
Sbjct: 78  GQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHANDEAQLLLVGNKSD 136
Query: 130 MKGAMTPMEVCEGLG 144
           M+  +   +  E L 
Sbjct: 137 METRVVTADQGEALA 151

>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 141 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 200
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 201 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 254

>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 149 DVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 208
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +   + I++F NK+D+   K   +P+ +C
Sbjct: 209 VLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 262

>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 172 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285

>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 13/112 (11%)
Query: 42  VLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV-----DSL- 95
           +L+  PT G +     +K++ F ++DVGGQ   R  W   F     +I+ V     D + 
Sbjct: 161 LLARRPTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVL 220
Query: 96  --DRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
             DR+  R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 221 MEDRQTNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 272

>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 142 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 201
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 202 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 255

>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 175 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 234
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 235 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 288

>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGGQ   R  W H F     +I+ V   D + 
Sbjct: 172 DVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +   + I++F NK+D+   K   +P+ +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 285

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           +++++G    GK  +L +        S + TIG  F +  ++   K +   +WD  GQE+
Sbjct: 18  KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG 132
            R +   Y+    G+I V D  D+E     KQ  Q I  D +   +V  L+  NK D+  
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 135
Query: 133 A-----MTPMEVCEGLGL 145
                  T  E  + LG+
Sbjct: 136 KKVVDYTTAKEFADSLGI 153

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVE-KVQYKN---VIFTVWDVGGQE 72
            +++++G  + GKT+ L++          V T+G + + K  Y+N   +   +WD  GQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
           + R +   Y+    G I + D  + E    A Q++   IK     N+ +L+  NK DM+
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFN-AVQDWSTQIKTYSWDNAQVLLVGNKCDME 123

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           +++++G    GK+ +L +        S + TIG  F +  ++   K +   +WD  GQE+
Sbjct: 10  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 110
            R +   Y+    G+I V D  D+E     KQ  Q I
Sbjct: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 106

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 20  VVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQY--KNVIFTVWDVGGQEKL 74
           ++++G    GK+ +L +        S + TIG  F +  ++   K +   +WD  GQE+ 
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDM 130
           R +   Y+    G+I V D  D+E     KQ  Q I  D +   +V  L+  NK D+
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL 115

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIG--FNVEKVQYKN---VIFTVWDVGGQE 72
           ++V++G    GK+ +L +    E  L +  TIG  F  + +Q KN   +   +WD  GQE
Sbjct: 9   KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
           + R +   Y+    G + V D   +   E I K  +E    ++D    N VIL+  NK D
Sbjct: 69  RYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKE----LRDNADSNIVILLVGNKSD 124
Query: 130 MK 131
           +K
Sbjct: 125 LK 126

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIG--FNVEKVQYKNVI--FTVWDVGGQ 71
           E++V +LG    GK++I+++         + PTIG  F  + VQY+N +  F +WD  G 
Sbjct: 6   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 65
Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDM 130
           E+ R L   Y+  +   I V D    E     K   + + +  P  +  V+ +  NK D+
Sbjct: 66  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSI--VVAIAGNKCDL 123
Query: 131 KGAMTPME 138
                 ME
Sbjct: 124 TDVREVME 131

>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp Length = 362

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 42  VLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL------ 95
           +L+  PT G +    + KNV F + DVGGQ   R  W   F++   ++++V S       
Sbjct: 182 LLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 241
Query: 96  --DRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
             DR+  R+ ++   F+ I+ +    N  I++F NK D+
Sbjct: 242 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280

>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DV GQ   R  W H F     +I+ V   D + 
Sbjct: 173 DVLRTRVKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDL 232
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 233 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 286

>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVG Q   R  W H F     +I+ V   D + 
Sbjct: 172 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 5   FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIG--FNVEKV--QYK 59
           F+  FD  F     +++++G  + GKT+ L++          V T+G  F V+ V    K
Sbjct: 16  FQGNFDYMF-----KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK 70
Query: 60  NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS 119
            V   +WD  GQE+ R +   Y+    G I + D  + E    A Q++   IK     N+
Sbjct: 71  RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN-AVQDWATQIKTYSWDNA 129
Query: 120 VILVFANKQDMKGA-MTPME----VCEGLGL 145
            +++  NK DM+   + P E    + E LG 
Sbjct: 130 QVILVGNKCDMEEERVVPTEKGQLLAEQLGF 160

>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp-Alf4 Length = 338

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 42  VLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL------ 95
           +L+  PT G +    + KNV F + DVGGQ   R  W   F++   ++++V S       
Sbjct: 158 LLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 217
Query: 96  --DRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
             DR+  R+ ++   F+ I+ +    N  I++F NK D+
Sbjct: 218 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256

>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DV GQ   R  W H F     +I+ V   D + 
Sbjct: 173 DVLRTRVKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDL 232
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  +    ++ I++F NK+D+   K   +P+ +C
Sbjct: 233 VLAEDEEMNRMHESMKLFDSICNNKCFTDTSIILFLNKKDLFEEKIKKSPLTIC 286

>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 41  EVLST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE- 98
           +VL T V T G       +K++ F ++DVGG    R  W H F     +I+ V   D + 
Sbjct: 172 DVLRTRVKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 99  ---------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
                    R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 6/135 (4%)
Query: 15  NSEMRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVG 69
           +S  +++++G    GK+ +L +           T   I F ++ V    K V   +WD  
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70  GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
           GQE+ R +   Y+    G+I V D  D       KQ F+  + +     + +L+  NK D
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKT-VNEHANDEAQLLLVGNKSD 119
Query: 130 MKGAMTPMEVCEGLG 144
            +  +   +  E L 
Sbjct: 120 XETRVVTADQGEALA 134

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKV-QYKN--VIFTVWDVG 69
          G   +++V++G  A GKT +L     GE+ +  VPT+  N   V +YKN   I  +WD  
Sbjct: 19 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTA 78
Query: 70 GQE---KLRPL 77
          GQE   +LRPL
Sbjct: 79 GQEEYDRLRPL 89

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKV-QYKN--VIFTVWDVG 69
          G   +++V++G  A GKT +L     GE+ +  VPT+  N   V +YKN   I  +WD  
Sbjct: 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTA 79
Query: 70 GQE---KLRPL 77
          GQE   +LRPL
Sbjct: 80 GQEEYDRLRPL 90

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 6   RKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIG--FNVEKVQY--KN 60
           R  +D  F     +VV++G    GK+ +L +    E  L +  TIG  F    +Q   K 
Sbjct: 14  RGSYDYLF-----KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 68
Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD---SLDRERIGKAKQEFQAIIKDPFML 117
           +   +WD  GQE+ R +   Y+    G + V D    L  E + +  +E    ++D    
Sbjct: 69  IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE----LRDHADS 124
Query: 118 NSVILVFANKQDMK 131
           N VI++  NK D++
Sbjct: 125 NIVIMLVGNKSDLR 138

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 19  RVVMLGLDAAGKTTILYKL--------HIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGG 70
           +VV+LG    GKT+++ +         HI  + ++  T   N+     K V   +WD  G
Sbjct: 22  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGG---KRVNLAIWDTAG 78
Query: 71  QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQD 129
           QE+   L   Y+ +++G I V D  D +   K K   + + K   + N + L +  NK D
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK--MLGNEICLCIVGNKID 136
Query: 130 MK 131
           ++
Sbjct: 137 LE 138

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           +VV++G    GK+ +L +    E  L +  TIG  F    +Q   K +   +WD  GQE+
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 74  LRPLWRHYFNNTDGLIYVVD---SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
            R +   Y+    G + V D    L  E + +  +E    ++D    N VI++  NK D+
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE----LRDHADSNIVIMLVGNKSDL 146
Query: 131 K 131
           +
Sbjct: 147 R 147

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 6/135 (4%)
Query: 15  NSEMRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVG 69
           +S  +++++G    GK+ +L +           T   I F ++ V    K V   +WD  
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 70  GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
           GQE+ R +   Y+    G+I V D  D       KQ F+  + +     + +L+  NK D
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKT-VNEHANDEAQLLLVGNKSD 119
Query: 130 MKGAMTPMEVCEGLG 144
            +  +   +  E L 
Sbjct: 120 XETRVVTADQGEALA 134

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 19  RVVMLGLDAAGKTTILYKL--------HIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGG 70
           +VV+LG    GKT+++ +         HI  + ++  T   N+     K V   +WD  G
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGG---KRVNLAIWDTAG 64
Query: 71  QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQD 129
           QE+   L   Y+ +++G I V D  D +   K K   + + K   + N + L +  NK D
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK--MLGNEICLCIVGNKID 122
Query: 130 MK 131
           ++
Sbjct: 123 LE 124

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVP-TIGFN----VEKVQYKNVIFTVWDVGGQEK 73
           + +++G    GK+ +L++    + ++  P TIG      + +V  + +   +WD  GQE+
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFML---NSVILVFANKQDM 130
            R + R Y+    G + V D   R           + + D   L   N+VI++  NK D+
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRR----STYNHLSSWLTDARNLTNPNTVIILIGNKADL 132
Query: 131 KG 132
           + 
Sbjct: 133 EA 134

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 19  RVVMLGLDAAGKTTILYKLHIG---EVLSTVPTIGFNVE--KVQYKNVIFTVWDVGGQEK 73
           ++V++G  + GKT ++ +   G   E   +   + F ++  ++Q K V   +WD  GQE+
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
            R + + Y+ + +G I   D   R          + + K     N V L+  NK D+
Sbjct: 91  FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS-NIVQLLIGNKSDL 146

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 19  RVVMLGLDAAGKTTILYKL--------HIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGG 70
           +VV+LG    GKT+++ +         HI  + ++  T   N+     K V   +WD  G
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGG---KRVNLAIWDTAG 64
Query: 71  QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQD 129
           QE+   L   Y+ +++G I V D  D +   K K   + + K   + N + L +  NK D
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK--MLGNEICLCIVGNKID 122
Query: 130 MK 131
           ++
Sbjct: 123 LE 124

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLST-VPTIG--FNVEKV--QYKNVIFTVWDVGGQEK 73
           +++++G  + GKT+ L++          V T+G  F V+ V    K +   +WD  GQE+
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
            R +   Y+    G + + D  ++E    A Q++   IK     N+ +++  NK D++  
Sbjct: 84  YRTITTAYYRGAMGFLLMYDIANQESFA-AVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
Query: 134 -MTPME 138
            + P E
Sbjct: 143 RVVPAE 148

>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S Length = 324

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 44  STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV----------VD 93
           S V T G    +  +K++ F ++DVGGQ   R  W H F     +I++          V+
Sbjct: 147 SRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVE 206
Query: 94  SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
             +  R+ ++   F +I    +   + I++F NK+D+
Sbjct: 207 DDEVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDV 243

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
           + ++V+LG  A GK++++ +   G+       TIG  F  + V   +  V F +WD  GQ
Sbjct: 7   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
           E+   L   Y+      I V D  + E   +AK   + + +     N VI +  NK D+
Sbjct: 67  ERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADL 124

>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp Length = 338

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 42  VLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL------ 95
           +L+  PT G +    + KNV F + DVGG    R  W   F++   ++++V S       
Sbjct: 158 LLARRPTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVL 217
Query: 96  --DRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
             DR+  R+ ++   F+ I+ +    N  I++F NK D+
Sbjct: 218 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
           + ++V+LG  A GK++++ +   G+       TIG  F  + V   +  V F +WD  GQ
Sbjct: 6   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
           E+   L   Y+      I V D  + E   +AK   + + +     N VI +  NK D+
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADL 123

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 8   LFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV-LSTVPTIG--FNVEKVQY--KNVI 62
           ++D  F     +VV++G    GK+ +L +    E  L +  TIG  F    +Q   K + 
Sbjct: 1   MYDYLF-----KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 55
Query: 63  FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD---SLDRERIGKAKQEFQAIIKDPFMLNS 119
             +WD  GQE+ R +   Y+    G + V D    L  E + +  +E    ++D    N 
Sbjct: 56  AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE----LRDHADSNI 111
Query: 120 VILVFANKQDMK 131
           VI++  NK D++
Sbjct: 112 VIMLVGNKSDLR 123

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
           + ++V+LG  A GK++++ +   G+       TIG  F  + V   +  V F +WD  GQ
Sbjct: 7   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
           E+   L   Y+      I V D  + E   +AK   + + +     N VI +  NK D+
Sbjct: 67  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADL 124

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 7  KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIG--FNVEKVQY--KNV 61
          K +D  F     +++++G    GKT +L++       ST + TIG  F +  ++   K +
Sbjct: 3  KTYDYLF-----KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI 57
Query: 62 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 93
             +WD  GQE+ R +   Y+    G++ V D
Sbjct: 58 KLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 17  EMRVVMLGLDAAGKTTILYKLH---IGEVLSTVPTIGFNVEKVQY--KNVIFTVWDVGGQ 71
           +++V+++G    GKT+++ +       E   +   + F ++ V+   K +   +WD  GQ
Sbjct: 26  KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRE 98
           E+   +   Y+ +  G+I V D   +E
Sbjct: 86  ERFNSITSAYYRSAKGIILVYDITKKE 112

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 16  SEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIG--FNVEKV--QYKNVIFTVWDVGG 70
           + +++V+LG  A GK++I+ +    +      PTIG  F  ++V      V F +WD  G
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 71  QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ 105
           QE+   L   Y+ N    + V D    +   KA+ 
Sbjct: 62  QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARH 96

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 50  GFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQA 109
           G  V  V  K V   +WD  GQE+ R + R Y+    G + V D   RE          A
Sbjct: 63  GSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE----TYNSLAA 118
Query: 110 IIKDPFML---NSVILVFANKQDM 130
            + D   L   N V+++  NK+D+
Sbjct: 119 WLTDARTLASPNIVVILCGNKKDL 142

>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 402

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 46  VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD-----RE-- 98
           V T G    K Q   V F ++DVGGQ   R  W   FN+   +I+VV S       RE  
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 99  ---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
              R+ +A   F++I  + ++    +++F NKQD+
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296

>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 380

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 46  VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD-----RE-- 98
           V T G    K Q   V F ++DVGGQ   R  W   FN+   +I+VV S       RE  
Sbjct: 188 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 247
Query: 99  ---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
              R+ +A   F++I  + ++    +++F NKQD+
Sbjct: 248 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 282

>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 380

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 46  VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD-----RE-- 98
           V T G    K Q   V F ++DVGGQ   R  W   FN+   +I+VV S       RE  
Sbjct: 188 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 247
Query: 99  ---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
              R+ +A   F++I  + ++    +++F NKQD+
Sbjct: 248 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 282

>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 394

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 46  VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD-----RE-- 98
           V T G    K Q   V F ++DVGGQ   R  W   FN+   +I+VV S       RE  
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 99  ---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
              R+ +A   F++I  + ++    +++F NKQD+
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIG--FNVEKVQYKN--VIFTVWDVGGQ 71
           + ++V+LG  A GK++++ +   G+       TIG  F  + V   +  V F +WD  GQ
Sbjct: 8   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQ 67
Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAK 104
           E+   L   Y+      I V D  ++E   +AK
Sbjct: 68  ERYHSLAPMYYRGAQAAIVVYDITNQETFARAK 100

>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 402

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 46  VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD-----RE-- 98
           V T G    K Q   V F ++DVGGQ   R  W   FN+   +I+VV S       RE  
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 99  ---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
              R+ +A   F++I  + ++    +++F NKQD+
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLST-VPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
          +++++G    GKT +L++       ST + TIG  F +  ++   K +   +WD  GQE+
Sbjct: 8  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 74 LRPLWRHYFNNTDGLIYVVD 93
           R +   Y+    G++ V D
Sbjct: 68 FRTITTAYYRGAMGIMLVYD 87

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK----VQYKNVIFTVWDVGGQEK 73
           +++++G    GKT + Y+   G     T  TIG +  +    +  + +   +WD  GQE+
Sbjct: 31  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 90
Query: 74  LR-PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMK 131
            R  + +HY+ N   +++V D  +           +   K   + N +  ++  NK D++
Sbjct: 91  FRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDLR 149
Query: 132 GAM 134
            A+
Sbjct: 150 SAI 152

>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From Arabidopsis Thaliana Length = 354

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 62  IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------DSLDRERIGKAKQEFQAII 111
           ++ ++DVGGQ   R  W H F     +I+            +   + R+ + K+ F  ++
Sbjct: 184 VYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 243
Query: 112 KDPFMLNSVILVFANKQDM---KGAMTPMEVCE 141
           K P    +  ++F NK D+   K    P+ VCE
Sbjct: 244 KQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCE 276

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK----VQYKNVIFTVWDVGGQEK 73
           +++++G    GKT + Y+   G     T  TIG +  +    +  + +   +WD  GQE+
Sbjct: 22  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81
Query: 74  LR-PLWRHYFNNTDGLIYVVD 93
            R  + +HY+ N   +++V D
Sbjct: 82  FRKSMVQHYYRNVHAVVFVYD 102

>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit From Entamoeba Histolytica, Ehg-Alpha-1 Length = 340

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 59  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------DSLDRERIGKAKQEFQ 108
           K++ F + DVGGQ   R  W  +F++ D  I+V           +  +  R+ ++   F+
Sbjct: 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFK 218
Query: 109 AIIKDPFMLNSVILVFANKQDM 130
            I  + F+  +V L+F NK D+
Sbjct: 219 DIXTNEFLKGAVKLIFLNKXDL 240

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 18  MRVVMLGLDAAGKTTILYKL---HIGEVLSTVPTIGFNVEKVQYK------------NVI 62
           ++++ LG    GKTT LY+           T   I F  ++V Y              V 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 63  FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL 122
             +WD  GQE+ R L   +F +  G + + D   ++     +     +  + +  N  I+
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 123 VFANKQDM 130
           +  NK D+
Sbjct: 146 LIGNKADL 153

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 17  EMRVVMLGLDAAGKTTILYKLHIG---EVLSTVPTIGFNVEKVQYKN--VIFTVWDVGGQ 71
           + ++V+LG  A GK++++ +   G   E   +     F  + V   +  V F +WD  GQ
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
           E+   L   Y+      I V D  + +   +AK   + + +     N VI +  NK D+
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA-SPNIVIALAGNKADL 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-107
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-107
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-106
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-105
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-105
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-105
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-104
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-104
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-103
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-102
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-102
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-102
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-100
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-100
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	5e-95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	3e-73
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-67
2ged_A	193	SR-beta, signal recognition particle receptor beta	1e-59
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-58
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	9e-47
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-40
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	9e-40
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-33
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	1e-18
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	4e-09
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	7e-09
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	7e-09
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-08
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-08
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	3e-08
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	2e-07
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-07
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	1e-06
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-06
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	5e-06
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	6e-06
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	1e-05
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-05
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-05
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-05
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	3e-05
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-05
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	5e-05
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	6e-05
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	7e-05
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	7e-05
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	7e-05
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	7e-05
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	8e-05
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	8e-05
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-04
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-04
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-04
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-04
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-04
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-04
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-04
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-04
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-04
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-04
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-04
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-04
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-04
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	2e-04
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-04
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-04
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-04
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-04
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-04
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	3e-04
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-04
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	3e-04
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	3e-04
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	3e-04
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	3e-04
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-04
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	4e-04
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	4e-04
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	4e-04
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	6e-04
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	7e-04
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	8e-04
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	9e-04
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	9e-04

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score =  304 bits (781), Expect = e-107
 Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 1   MGQAFR-----KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE 54
           MG +                 EM + ++GL  +GKTT +  +  G+     +PT+GFN+ 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR 60

Query: 55  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 114
           K+   NV   +WD+GGQ + R +W  Y      ++Y+VD+ D+E+I  +K E   ++  P
Sbjct: 61  KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP 120

Query: 115 FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174
            +    +LV  NK+D+ GA+   E+ E + L  +++R+         + D +   L WL 
Sbjct: 121 QLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180

Query: 175 STLKEMRA 182
              K  R+
Sbjct: 181 QHSKSRRS 188

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  304 bits (780), Expect = e-107
 Identities = 89/187 (47%), Positives = 126/187 (67%), Gaps = 3/187 (1%)

Query: 1   MGQAFRKLFDVF---FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQ 57
           MG     L         + ++RV+MLGLD AGKT+ILY+LH+G+V++TVPT+G N+E +Q
Sbjct: 3   MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62

Query: 58  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFML 117
           YKN+ F VWD+GGQ  +RP WR YF++TD +IYVVDS DR+R+G AK E  A++ +  + 
Sbjct: 63  YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR 122

Query: 118 NSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
            S++L+FANKQD+  A +  E+ E LG+  + NR W I  + +  GDGL EG+DWL   L
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182

Query: 178 KEMRAAG 184
           +E     
Sbjct: 183 REQGLGA 189

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score =  301 bits (773), Expect = e-106
 Identities = 82/179 (45%), Positives = 118/179 (65%), Gaps = 1/179 (0%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG  F +++   F + E +V+++GLD AGKTTILY+  + EV+ T PTIG NVE++   N
Sbjct: 1   MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
             F +WD+GGQE LR  W  Y+ NT+ +I VVDS DRERI   ++E   ++    +  + 
Sbjct: 60  TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
           +L+FANKQD+K  MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL+W+ S LK 
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score =  299 bits (768), Expect = e-105
 Identities = 73/177 (41%), Positives = 110/177 (62%), Gaps = 2/177 (1%)

Query: 5   FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFT 64
            RKL      + E+R+++LGLD AGKTT+L +L   ++    PT GFN++ VQ +     
Sbjct: 6   LRKLK--SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLN 63

Query: 65  VWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF 124
           VWD+GGQ K+RP WR YF NTD LIYV+DS DR+R  +  QE   ++++  +    +L+F
Sbjct: 64  VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 123

Query: 125 ANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
           ANKQD+  A    E+ EGL L  +++R W IQ   AL G+G+ +G++W+   +   +
Sbjct: 124 ANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKK 180

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score =  298 bits (765), Expect = e-105
 Identities = 93/170 (54%), Positives = 124/170 (72%)

Query: 12  FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQ 71
                EMR+++LGLD AGKTTILY+L +GEV++T+PTIGFNVE V YKN+ F VWD+GG 
Sbjct: 2   SHMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGL 61

Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
             +RP WR Y++NTD +IYVVDS DR+RIG +K E  A++++  +  ++++VFANKQDM+
Sbjct: 62  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121

Query: 132 GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
            AMT  E+   LGL  LK+RKW I  T A KG GL E ++WL  TLK  +
Sbjct: 122 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 171

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score =  298 bits (766), Expect = e-105
 Identities = 73/178 (41%), Positives = 115/178 (64%), Gaps = 1/178 (0%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           MG     L  +     E+R++MLGLD AGKTTIL K +  +V +  PT+GFN++ ++++ 
Sbjct: 3   MGL-LTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG 61

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
               +WDVGGQ+ LR  WR+YF +TDGLI+VVDS DR+R+   ++E Q+++ +  +  + 
Sbjct: 62  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 121

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           +L+FANKQD+ GA++   + E L L  +++  W IQG  A+ G+ L  G+DWL   + 
Sbjct: 122 LLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score =  297 bits (763), Expect = e-104
 Identities = 90/182 (49%), Positives = 130/182 (71%), Gaps = 1/182 (0%)

Query: 1   MGQAFRKLFDVFFG-NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYK 59
           MG  F  +FD  +G N E+R+++LGLD AGKTTILY+L IGEV++T PTIGFNVE + YK
Sbjct: 1   MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60

Query: 60  NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS 119
           N+   VWD+GGQ  +RP WR Y+ +T  +I+VVDS D++R+  A +E   ++++  + ++
Sbjct: 61  NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120

Query: 120 VILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
            +LVFANKQD  GA++  EV + L L +LK+R W I  + A+KG+G+ EGLDWL   +KE
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180

Query: 180 MR 181
            +
Sbjct: 181 EQ 182

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score =  298 bits (764), Expect = e-104
 Identities = 102/179 (56%), Positives = 139/179 (77%), Gaps = 4/179 (2%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
            G  F ++F    G  +MR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 17  RGSLFSRIF----GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 72

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ ++  E Q ++++  + ++V
Sbjct: 73  ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
           +LVFANKQDM  AM   E+ + LGL  L++R W++Q TCA +G GLY+GLDWL+  L +
Sbjct: 133 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  295 bits (757), Expect = e-103
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 8/181 (4%)

Query: 5   FRKLFDVF-FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIF 63
           FR +       N   +++ LGLD AGKTT+L+ L    + +  PT     E++   N+ F
Sbjct: 10  FRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69

Query: 64  TVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILV 123
           T +D+GG  + R LW+ YF   +G++++VD+ D ER  +A+ E  A+     + +   ++
Sbjct: 70  TTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVI 129

Query: 124 FANKQDMKGAMTPMEVCEGLGLFDLKN-------RKWHIQGTCALKGDGLYEGLDWLAST 176
             NK D   A++  E+   LGL +          R   +     +  +G  E   WL+  
Sbjct: 130 LGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189

Query: 177 L 177
           +
Sbjct: 190 I 190

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score =  291 bits (748), Expect = e-102
 Identities = 80/181 (44%), Positives = 114/181 (62%), Gaps = 4/181 (2%)

Query: 1   MGQAFRKLFDVF----FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKV 56
           MG +             G+ E +V+++GLD AGKTTILY+  + EV+ T PTIG NVE++
Sbjct: 1   MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI 60

Query: 57  QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFM 116
              N  F +WD+GGQE LR  W  Y+ NT+ +I VVDS DRERI   ++E   ++    +
Sbjct: 61  VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 120

Query: 117 LNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 176
             + +L+FANKQD+K  MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL+W+ S 
Sbjct: 121 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180

Query: 177 L 177
           L
Sbjct: 181 L 181

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score =  290 bits (745), Expect = e-102
 Identities = 100/164 (60%), Positives = 134/164 (81%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
           MR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPL
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 78  WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
           WRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120

Query: 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
           E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL++ L+  +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 164

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  291 bits (748), Expect = e-102
 Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 20/197 (10%)

Query: 1   MGQAFRKLFDVF--------FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFN 52
           M   F  ++  F              ++V LGLD AGKTT+L+ L    +   VPT+   
Sbjct: 1   MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60

Query: 53  VEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIK 112
            E++    + FT +D+GG  + R +W++Y    +G++++VD  D ER+ ++K+E  +++ 
Sbjct: 61  SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120

Query: 113 DPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCA 160
           D  + N  IL+  NK D   A++   + E  GL+            +L  R   +     
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180

Query: 161 LKGDGLYEGLDWLASTL 177
           LK  G  EG  W+A  +
Sbjct: 181 LKRQGYGEGFRWMAQYI 197

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score =  287 bits (736), Expect = e-100
 Identities = 72/189 (38%), Positives = 115/189 (60%), Gaps = 8/189 (4%)

Query: 1   MGQAFRKLFDVF----FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS--TVPTIGFNVE 54
           MG +             G+ E+ V+ LGLD +GKTTI+ KL      S   +PTIGF++E
Sbjct: 1   MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE 60

Query: 55  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 114
           K +  ++ FTV+D+ GQ + R LW HY+     +I+V+DS DR R+  AK+E   ++  P
Sbjct: 61  KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP 120

Query: 115 FMLNS--VILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 172
            + +    IL FANK D++ A+T ++V + L L ++K++ WHI  + A+KG+GL EG+DW
Sbjct: 121 DIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDW 180

Query: 173 LASTLKEMR 181
           L   ++ ++
Sbjct: 181 LQDQIQTVK 189

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  278 bits (713), Expect = 5e-95
 Identities = 103/181 (56%), Positives = 137/181 (75%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
                       FG  EMR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN
Sbjct: 149 AQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 208

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           + FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 268

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           +LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL++ L+  
Sbjct: 269 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

Query: 181 R 181
           +
Sbjct: 329 K 329

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score =  219 bits (559), Expect = 3e-73
 Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 9/174 (5%)

Query: 15  NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN---VIFTVWDVGGQ 71
           +S+  V+ +GL  +GKT +  +L  G+   T  +I  +    +  N      T+ D+ G 
Sbjct: 5   SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGH 64

Query: 72  EKLRP-LWRHYFNNTDGLIYVVDSLDRERIGKAKQEF--QAIIKDPFMLNSV-ILVFANK 127
           E LR  L   + ++   +++VVDS   +R  K   EF  Q +I    + NS  +L+  NK
Sbjct: 65  ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124

Query: 128 QDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
           QD+  A +   + + L       R            D        L    KE  
Sbjct: 125 QDIAMAKSAKLIQQQLEKELNTLRVTRSAAPST--LDSSSTAPAQLGKKGKEFE 176

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  204 bits (520), Expect = 1e-67
 Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 26/189 (13%)

Query: 17  EMRVVMLGLDAAGKTTILYKLH-------IGEVLS----TVPTIGFN-----VEKVQYKN 60
             ++V  G   +GKTT L  ++        GE++S       T+ F+     + +V+   
Sbjct: 14  NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD-----PF 115
             F ++ V GQ       +      DG+++V DS    R+    +  + + ++       
Sbjct: 74  TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADS-APNRLRANAESMRNMRENLAEYGLT 132

Query: 116 MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 175
           + +  I++  NK+D+  A+    V   +        K+ +    A +G G++E L  ++ 
Sbjct: 133 LDDVPIVIQVNKRDLPDALPVEMVRAVVDP----EGKFPVLEAVATEGKGVFETLKEVSR 188

Query: 176 TLKEMRAAG 184
            +    A G
Sbjct: 189 LVLARVAGG 197

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score =  183 bits (467), Expect = 1e-59
 Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 11/149 (7%)

Query: 14  GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK 73
           G+ +  +++ G   +GKT++L  L    V  TV +    +    Y     T+ D  G  K
Sbjct: 45  GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVK 103

Query: 74  LRPLWRHYFNN----TDGLIYVVDSL-DRERIGKAKQEFQAIIKDP--FMLNSV-ILVFA 125
           LR     Y         GLI++VDS  D +++    +    I+        N + IL+  
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163

Query: 126 NKQDMKGAMTPMEVCEGLG--LFDLKNRK 152
           NK ++  A  P ++ + L   +  +  R+
Sbjct: 164 NKSELFTARPPSKIKDALESEIQKVIERR 192

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score =  182 bits (463), Expect = 1e-58
 Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 11/169 (6%)

Query: 15  NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKL 74
           + +  +++ G   +GKT++L  L    V  TV +    +    Y     T+ D  G  KL
Sbjct: 10  SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKL 68

Query: 75  RPLWRHYFNN----TDGLIYVVDSL-DRERIGKAKQEFQAIIKDP--FMLNSV-ILVFAN 126
           R     Y         GLI++VDS  D +++    +    I+        N + IL+  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 127 KQDMKGAMTPMEVCEGLG--LFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
           K ++  A  P ++ + L   +  +  R+         K +      + L
Sbjct: 129 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL 177

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227

 Score =  152 bits (384), Expect = 9e-47
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 5/129 (3%)

Query: 58  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER--IGKAKQEFQAIIKDPF 115
           +          G +  + P  +      DG IYV ++   +R           A+    F
Sbjct: 99  FSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAF 158

Query: 116 MLNS--VILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
             +   ++++    Q     M    +   L L  L N  W +Q T A    G   G++W+
Sbjct: 159 GSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWI 217

Query: 174 ASTLKEMRA 182
              ++  RA
Sbjct: 218 LEEVESKRA 226

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score =  135 bits (341), Expect = 1e-40
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 20/162 (12%)

Query: 12  FFGNSEMRVVMLGLDAAGKTTI----LYKLHIGEVLSTVPTIGFNVEKVQYK-NVIFTVW 66
           +F  S+ R++++GL  +GK++I     +K+   E L    T     + +     V F +W
Sbjct: 15  YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIW 74

Query: 67  DVGGQEKLRPLW---RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS--VI 121
           D  GQ             F  T  LIYV+D+ D      A       +   + +N     
Sbjct: 75  DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYME--ALTRLHITVSKAYKVNPDMNF 132

Query: 122 LVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG 163
            VF +K D       +E          ++         A  G
Sbjct: 133 EVFIHKVDGLSDDHKIET--------QRDIHQRANDDLADAG 166

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score =  136 bits (344), Expect = 9e-40
 Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 5/120 (4%)

Query: 67  DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER--IGKAKQEFQAII-KDPFMLNSVILV 123
             G +  + P  +      DG IYV ++   +R           A+           +LV
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252

Query: 124 FA-NKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 182
            +   Q     M    +   L L  L N  W +Q T A    G   G++W+   ++  RA
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKRA 311

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score =  120 bits (301), Expect = 2e-33
 Identities = 30/177 (16%), Positives = 61/177 (34%), Gaps = 20/177 (11%)

Query: 19  RVVMLGLDAAGKTTI----LYKLHIGEVLSTVPTIGFNVEKVQY-KNVIFTVWDVGGQEK 73
           +++++G   +GK+++           +      TI      +++  N+   +WD GGQ+ 
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64

Query: 74  -----LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS--VILVFAN 126
                      H F     LI+V D    E + K  + F   +K     +    I V  +
Sbjct: 65  FMENYFTKQKDHIFQMVQVLIHVFDVESTEVL-KDIEIFAKALKQLRKYSPDAKIFVLLH 123

Query: 127 KQDMKGAMTPMEVCEGL------GLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
           K D+       E+ + +         +          T     + LY+    +  +L
Sbjct: 124 KMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 80.9 bits (199), Expect = 1e-18
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 12/119 (10%)

Query: 20  VVMLGLDAAGKTTIL----YKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLR 75
           V+++G+   GK++I     + +   + L    T   ++E      +   V ++ GQ    
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNYF 60

Query: 76  PLW---RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS--VILVFANKQD 129
                    F +   L+YV+DS D      A      II+  + +N    I V  +K D
Sbjct: 61  EPSYDSERLFKSVGALVYVIDSQDEYI--NAITNLAMIIEYAYKVNPSINIEVLIHKVD 117

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score = 54.0 bits (129), Expect = 4e-09
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 44  STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD------- 96
             V T G    K Q   V F ++DVGGQ   R  W   FN+   +I+VV S         
Sbjct: 200 CRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIRE 259

Query: 97  ---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
                R+ +A   F++I  + ++    +++F NKQD+
Sbjct: 260 DNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score = 53.6 bits (128), Expect = 7e-09
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 10/97 (10%)

Query: 44  STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----- 98
           +  PT G +    + KNV F + DVGGQ   R  W   F++   ++++V S + +     
Sbjct: 184 ARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLME 243

Query: 99  -----RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
                R+ ++   F+ I+ +    N  I++F NK D+
Sbjct: 244 DRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 52.0 bits (125), Expect = 7e-09
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 23/131 (17%)

Query: 16  SEMRVVMLGLDAAGKTTILYKLHIGE---VLSTVPTIG-------FNVEKVQYKNVIFTV 65
           + M+++++G   +GKTT+L +L   +   +     T+G         +   + ++++  V
Sbjct: 1   NRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNV 60

Query: 66  WDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFMLNS 119
           WD  G+E+      H+       + V D      + K + E  A+      IK     +S
Sbjct: 61  WDFAGREEFYSTHPHFMTQRALYLAVYD------LSKGQAEVDAMKPWLFNIKA-RASSS 113

Query: 120 VILVFANKQDM 130
            +++     D+
Sbjct: 114 PVILVGTHLDV 124

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 12/136 (8%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQ 57
           M  A +    V F     ++V++G    GKTT + +   GE     V T+G   +     
Sbjct: 4   MASAAQGEPQVQF-----KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH 58

Query: 58  --YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 115
                + F VWD  GQEK   L   Y+      I + D   R          + +++   
Sbjct: 59  TNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC- 117

Query: 116 MLNSVILVFANKQDMK 131
             N  I++  NK D+K
Sbjct: 118 -ENIPIVLCGNKVDIK 132

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 51.9 bits (124), Expect = 3e-08
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 18/129 (13%)

Query: 15  NSEMRVVMLGLDAAGKTTILYKL-----------HIGE--VLSTVPTIGFNVEKVQYKNV 61
             E++V ++G   AGKT++L +L             G   V    P I       + K  
Sbjct: 39  LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98

Query: 62  IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI 121
           +F  WD GGQE +    + +   +   + ++DS          +  +          S +
Sbjct: 99  LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGG-----KSPV 153

Query: 122 LVFANKQDM 130
           +V  NK D 
Sbjct: 154 IVVMNKIDE 162

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 13/110 (11%)

Query: 44  STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------D 93
           + V T G       +K++ F ++DVGGQ   R  W H F     +I+ V          +
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235

Query: 94  SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 140
             +  R+ ++ + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 10/97 (10%)

Query: 44  STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------D 93
             VPT G        ++VIF + DVGGQ   R  W H F N   ++++V          +
Sbjct: 150 VRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 209

Query: 94  SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
           S +  R+ ++K  F+ II  P+  NS +++F NK+D+
Sbjct: 210 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 6/169 (3%)

Query: 16  SEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGG 70
           + +++V+LG  A GK++I+ +    +   +  PTIG  F  ++V      V F +WD  G
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 71  QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
           QE+   L   Y+ N    + V D    +   KA+   +  + +    + +I +  NK D 
Sbjct: 62  QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDX 120

Query: 131 KGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
                  +V    G    + +      T A  G+ + +    +   +  
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 37  LHIGEVLSTVPTIGFNVEKV-QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 95
           L+     + V  I F+     +    ++ ++DVGGQ   R  W H F     +I+     
Sbjct: 158 LYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217

Query: 96  DRE----------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVCE 141
           + +          R+ + K+ F  ++K P    +  ++F NK D+   K    P+ VCE
Sbjct: 218 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCE 276

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 13/121 (10%)

Query: 20  VVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVEKVQY-----KNVIFTVWDVGGQEK 73
           + ++G    GKTT + ++  G    +   T+G     V +       + F VWD  GQEK
Sbjct: 14  ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAK---QEFQAIIKDPFMLNSVILVFANKQDM 130
              L   Y+    G I   D   R          +EFQA++ +     + I+V ANK D+
Sbjct: 74  KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKIDI 129

Query: 131 K 131
           K
Sbjct: 130 K 130

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 11/125 (8%)

Query: 13  FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFN---VEKVQYKNVIFTVWDV 68
           F    ++ V++G  A GKT +L            +PT+  N      V  K V   +WD 
Sbjct: 26  FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 85

Query: 69  GGQE---KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFA 125
            GQE   +LRPL    +  TD  +     +        + ++   ++     N+ I++  
Sbjct: 86  AGQEDYDRLRPL---SYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVG 141

Query: 126 NKQDM 130
            K D+
Sbjct: 142 TKLDL 146

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 14/84 (16%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 19 RVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFN---VEKVQYKNVIFTVWDVGGQEKL 74
          ++V++G    GKT +L+           VPT+  N     ++  + +  ++WD  G    
Sbjct: 9  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68

Query: 75 RPLWRHYFNNTDGLI--YVVDSLD 96
            +    + ++D ++  + +   +
Sbjct: 69 DNVRPLSYPDSDAVLICFDISRPE 92

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 20  VVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFN---VEKVQYKNVIFTVWDVGGQEKLR 75
           +V++G    GKT +L  L       T VPT+  N     + + + V  ++WD  G     
Sbjct: 30  LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD 89

Query: 76  PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
            +    ++++D ++   D    E +  A ++++  I D +  ++ +L+   K D+
Sbjct: 90  NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD-YCPSTRVLLIGCKTDL 143

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQ 57
           M    + +          +V++LG    GKT+++++    +       TIG  F  ++V 
Sbjct: 1   MSSRKKNIL---------KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVT 51

Query: 58  Y---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAII 111
               K     VWD  GQE+ + L   ++   D  + V D  +    E I   + EF    
Sbjct: 52  VDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA 111

Query: 112 KDPFMLNSVILVFANKQDMKGA 133
                     ++  NK D + +
Sbjct: 112 NVNSPETFPFVILGNKIDAEES 133

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 14/92 (15%)

Query: 16 SEMR---VVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFN---VEKVQYKNVIFTVWDV 68
          S  R    V +G  A GKT +L         +  VPT+  N      V    V   +WD 
Sbjct: 4  SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDT 63

Query: 69 GGQE---KLRPLWRHYFNNTDGLIYVVDSLDR 97
           GQE   +LRPL    +   D  I +  SL  
Sbjct: 64 AGQEDYNRLRPL---SYRGADVFI-LAFSLIS 91

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 20  VVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQEKL 74
           V++LG    GKT+++ +    +       TIG  F  ++V    + V   +WD  GQE+ 
Sbjct: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70

Query: 75  RPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
           + L   ++   D  + V D       + +   + EF          N   +V  NK D+
Sbjct: 71  QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 19/133 (14%)

Query: 8   LFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVE------KVQYKN 60
           ++D  F     +VV++G    GK+ +L +    E  L +  TIG  VE      +V  K 
Sbjct: 1   MYDYLF-----KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDGKT 53

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIK--DPFMLN 118
           +   +WD  GQE+ R +   Y+    G + V D          ++  + +    D    N
Sbjct: 54  IKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS---N 110

Query: 119 SVILVFANKQDMK 131
            VI++  NK D++
Sbjct: 111 IVIMLVGNKSDLR 123

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 18/124 (14%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           ++V+ G  A GK++ L +L   E   +   T+G  F ++ +    +  +  +WD  GQE+
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFMLNSVILVFANK 127
            R + + YF   DG++ + D    +        F  I      I+D       I++  NK
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKS-------FLNIREWVDMIEDAAHETVPIMLVGNK 142

Query: 128 QDMK 131
            D++
Sbjct: 143 ADIR 146

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 14/127 (11%)

Query: 14  GNSEMR---VVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFN-VEKVQY--KNVIFTVW 66
           G +E R    V++G  A GKT+++         +  +PT   N    V    + V   + 
Sbjct: 14  GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLC 73

Query: 67  DVGGQE---KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILV 123
           D  GQ+   KLRPL    + NTD  +     +         +++   I+      + I++
Sbjct: 74  DTAGQDEFDKLRPL---CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC-HCPKAPIIL 129

Query: 124 FANKQDM 130
              + D+
Sbjct: 130 VGTQSDL 136

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 12/122 (9%)

Query: 20  VVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQEKL 74
           V++LG    GK++++ +    +       TIG  F  + ++     V   +WD  GQE+ 
Sbjct: 10  VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 69

Query: 75  RPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEF--QAIIKDPFMLNSVILVFANKQD 129
           R L   ++  +D  +      D    + +   K+EF   A +K+P   +   ++  NK D
Sbjct: 70  RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE--SFPFVILGNKID 127

Query: 130 MK 131
           + 
Sbjct: 128 IS 129

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 20  VVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQEKL 74
           +V LG  + GKT+++ +        +   TIG  F  + +    + V   +WD  G E+ 
Sbjct: 19  LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERF 78

Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
           R L   Y  ++   + V D  +     +  +     ++     + +I++  NK D+ 
Sbjct: 79  RSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD-VRTERGSDVIIMLVGNKTDLA 134

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 11/121 (9%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFN-VEKVQY--KNVIFTVWDVGGQE 72
            +++V++G  A GKT +L     GE+ +  VPT+  N    ++Y  +  I  +WD  GQE
Sbjct: 23  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82

Query: 73  ---KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
              +LRPL    + ++D ++      +R        +++  IK  ++  +  ++   K D
Sbjct: 83  EYDRLRPL---SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH-YIDTAKTVLVGLKVD 138

Query: 130 M 130
           +
Sbjct: 139 L 139

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 40.6 bits (96), Expect = 7e-05
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 18/123 (14%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           +++++G    GK+ +L +    +   S + TIG  F ++ V    K V   +WD  GQE+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFMLNSVILVFANK 127
            R +   Y+    G+I V D  D          F  I      + +     + +L+  NK
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERT-------FTNIKQWFKTVNEHANDEAQLLLVGNK 117

Query: 128 QDM 130
            DM
Sbjct: 118 SDM 120

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 12/87 (13%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFN---VEKVQYKNVIFTVWDVGGQE-- 72
           ++V++G    GKT +L+           VPT+  N     ++  + +  ++WD  G    
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89

Query: 73  -KLRPLWRHYFNNTDGLI--YVVDSLD 96
             +RPL    + ++D ++  + +   +
Sbjct: 90  DNVRPL---SYPDSDAVLICFDISRPE 113

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 12/86 (13%)

Query: 20  VVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFN---VEKVQYKNVIFTVWDVGGQE--- 72
           +V++G  A GKT +L      +     VPT+  N     +V  K V   +WD  GQE   
Sbjct: 28  LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD 87

Query: 73  KLRPLWRHYFNNTDGLI--YVVDSLD 96
           +LRPL    + +TD ++  + +DS D
Sbjct: 88  RLRPL---SYPDTDVILMCFSIDSPD 110

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 10/121 (8%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQE 72
            +VV++G    GKT +L +    E    +  TIG  F+   V      V   +WD  G E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIK--DPFMLNSVILVFANKQDM 130
           + R +   Y+    G + V D    +     ++  + +    +      V+++  NK D+
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA---TIVVMLVGNKSDL 142

Query: 131 K 131
            
Sbjct: 143 S 143

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 22/127 (17%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVE------KVQYKNVIFTVWDVGG 70
            + +++G    GK+ +L++    + +     TIG  VE      +V  + +   +WD  G
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG--VEFGTRIIEVSGQKIKLQIWDTAG 73

Query: 71  QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFMLNSVILVF 124
           QE+ R + R Y+    G + V D   R         +  +       ++    N+VI++ 
Sbjct: 74  QERFRAVTRSYYRGAAGALMVYDITRRST-------YNHLSSWLTDARNLTNPNTVIILI 126

Query: 125 ANKQDMK 131
            NK D++
Sbjct: 127 GNKADLE 133

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 23/134 (17%)

Query: 9   FDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIF 63
           FD  F     +++++G  + GKT+ L++        + V T+G  F V+ +    K +  
Sbjct: 5   FDYMF-----KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKL 59

Query: 64  TVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFML 117
            +WD  G E+ R +   Y+    G I + D  + E        F A+      IK     
Sbjct: 60  QIWDTAGLERYRTITTAYYRGAMGFILMYDITNEES-------FNAVQDWSTQIKTYSWD 112

Query: 118 NSVILVFANKQDMK 131
           N+ +L+  NK DM+
Sbjct: 113 NAQVLLVGNKCDME 126

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 23/134 (17%)

Query: 9   FDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIF 63
           +D  F     +++++G    GK+ +L +        S + TIG  F +  ++   K +  
Sbjct: 30  YDYLF-----KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 84

Query: 64  TVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFML 117
            +WD  GQE+ R +   Y+    G+I V D  D+E        F  +      I      
Sbjct: 85  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES-------FNNVKQWLQEIDRYASE 137

Query: 118 NSVILVFANKQDMK 131
           N   L+  NK D+ 
Sbjct: 138 NVNKLLVGNKCDLT 151

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 23/134 (17%)

Query: 9   FDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIF 63
           FD  F     +++++G  + GKT+ L++        + V T+G  F V+ V    K V  
Sbjct: 20  FDYMF-----KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKL 74

Query: 64  TVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFML 117
            +WD  GQE+ R +   Y+    G I + D  + E        F A+      IK     
Sbjct: 75  QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES-------FNAVQDWATQIKTYSWD 127

Query: 118 NSVILVFANKQDMK 131
           N+ +++  NK DM+
Sbjct: 128 NAQVILVGNKCDME 141

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 23/134 (17%)

Query: 9   FDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIF 63
            D  F     +++++G  + GKT+ L++        + V T+G  F V+ V    K +  
Sbjct: 19  SDYMF-----KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73

Query: 64  TVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFML 117
            +WD  GQE+ R +   Y+    G + + D  ++E        F A+      IK     
Sbjct: 74  QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES-------FAAVQDWATQIKTYSWD 126

Query: 118 NSVILVFANKQDMK 131
           N+ +++  NK D++
Sbjct: 127 NAQVILVGNKCDLE 140

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 23/141 (16%)

Query: 1   MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQ 57
                 K +D        +++++G    GK+ +L +    +   S + TIG  F ++ V 
Sbjct: 9   ASSGNGKSYDSIM-----KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD 63

Query: 58  Y--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI----- 110
              K V   +WD  GQE+ R +   Y+    G+I V D  D          F  I     
Sbjct: 64  INGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT-------FTNIKQWFK 116

Query: 111 -IKDPFMLNSVILVFANKQDM 130
            + +     + +L+  NK DM
Sbjct: 117 TVNEHANDEAQLLLVGNKSDM 137

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 19/132 (14%)

Query: 9   FDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVE------KVQYKNV 61
           +D+ F     ++V++G    GK+ +L +    E  + +  TIG  VE      +++ K +
Sbjct: 10  YDLLF-----KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG--VEFATRTLEIEGKRI 62

Query: 62  IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIK--DPFMLNS 119
              +WD  GQE+ R +   Y+    G + V D                + +  D    N 
Sbjct: 63  KAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD---NV 119

Query: 120 VILVFANKQDMK 131
            + +  NK D+ 
Sbjct: 120 AVGLIGNKSDLA 131

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 12/120 (10%)

Query: 20  VVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQEKL 74
           VV+LG    GKT+++ +    +     + T+G  F  +K+    K V   +WD  GQE+ 
Sbjct: 9   VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68

Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAK---QEFQAIIKDPFMLNSVILVFANKQDMK 131
             L   Y+ +++G I V D  D +   K K   +E + ++ +       + +  NK D++
Sbjct: 69  HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLE 124

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 22/127 (17%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVE------KVQYKNVIFTVWDVGG 70
            + +++G    GK+ +L++    +    +  TIG  VE       V  K V   +WD  G
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIG--VEFGSRVVNVGGKTVKLQIWDTAG 83

Query: 71  QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFMLNSVILVF 124
           QE+ R + R Y+    G + V D   RE        + ++       +     N V+++ 
Sbjct: 84  QERFRSVTRSYYRGAAGALLVYDITSRET-------YNSLAAWLTDARTLASPNIVVILC 136

Query: 125 ANKQDMK 131
            NK+D+ 
Sbjct: 137 GNKKDLD 143

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 23/134 (17%)

Query: 9   FDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIF 63
           +D  F     +++++G    GK+ +L +        S + TIG  F +  ++   K +  
Sbjct: 13  YDYLF-----KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 67

Query: 64  TVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFML 117
            +WD  GQE+ R +   Y+    G+I V D  D+E        F  +      I      
Sbjct: 68  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES-------FNNVKQWLQEIDRYASE 120

Query: 118 NSVILVFANKQDMK 131
           N   L+  NK D+ 
Sbjct: 121 NVNKLLVGNKCDLT 134

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 12/86 (13%)

Query: 20  VVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFN---VEKVQYKNVIFTVWDVGGQE--- 72
           +V++G  A GKT +L      E     VPT+  N     +V  K V   +WD  GQE   
Sbjct: 28  LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD 87

Query: 73  KLRPLWRHYFNNTDGLI--YVVDSLD 96
           +LRPL    + +TD ++  + VDS D
Sbjct: 88  RLRPL---SYPDTDVILMCFSVDSPD 110

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 10/118 (8%)

Query: 20  VVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQEKL 74
           V +LG    GK++I+ +        +  PTIG  F  + V    +   F +WD  GQE+ 
Sbjct: 26  VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF 85

Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIK--DPFMLNSVILVFANKQDM 130
             L   Y+  +   + V D   ++     K+  + + +       N V+ +  NK D+
Sbjct: 86  HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE---NIVMAIAGNKCDL 140

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 20  VVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQEKL 74
           V +LG    GK++I+++        +  PTIG  F  + VQY  +   F +WD  G E+ 
Sbjct: 9   VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 68

Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAK---QEFQAIIKDPFMLNSVILVFANKQDMK 131
           R L   Y+  +   I V D    E     K   +E +         + V+ +  NK D+ 
Sbjct: 69  RALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNKCDLT 124

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 20  VVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQEKL 74
           +V+LG  A GK++++ +   G+       TIG  F  + V      V F +WD  GQE+ 
Sbjct: 9   LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68

Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAK---QEFQAIIKDPFMLNSVILVFANKQDMK 131
             L   Y+      I V D  + E   +AK   +E Q         N VI +  NK D+ 
Sbjct: 69  HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADLA 124

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 12/89 (13%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFN-VEKVQY--KNVIFTVWDVGGQE 72
            ++VV++G    GKT++L     G    +  PT+    +  +Q   K V   +WD  GQ+
Sbjct: 34  SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQD 93

Query: 73  ---KLRPLWRHYFNNTDGLI--YVVDSLD 96
              +LRPL   ++ +   L+  + V S +
Sbjct: 94  DYDRLRPL---FYPDASVLLLCFDVTSPN 119

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 22/127 (17%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVE------KVQYKNVIFTVWDVGG 70
            + +++G    GK+ +L +            TIG  VE       +  K +   +WD  G
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--VEFGARMVNIDGKQIKLQIWDTAG 79

Query: 71  QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFMLNSVILVF 124
           QE  R + R Y+    G + V D   RE        F  +       +     N VI++ 
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRET-------FNHLTSWLEDARQHSSSNMVIMLI 132

Query: 125 ANKQDMK 131
            NK D++
Sbjct: 133 GNKSDLE 139

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 18/125 (14%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQE 72
            +++++G    GKT +L++        + + TIG  F +  ++   K +   +WD  GQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFMLNSVILVFAN 126
           + R +   Y+    G++ V D  + +        F  I      I++    +   ++  N
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKS-------FDNIRNWIRNIEEHASADVEKMILGN 121

Query: 127 KQDMK 131
           K D+ 
Sbjct: 122 KCDVN 126

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 18/125 (14%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQE 72
            ++V++G    GKT ++ +   G        TIG  F ++ V+   + V   +WD  GQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFMLNSVILVFAN 126
           + R + + Y+ + + LI   D    E        F+ +      I+       + ++  N
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEES-------FRCLPEWLREIEQYASNKVITVLVGN 139

Query: 127 KQDMK 131
           K D+ 
Sbjct: 140 KIDLA 144

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 23/134 (17%)

Query: 9   FDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIF 63
           +D  F     +++++G    GK+ +L +          + TIG  F ++ V+   K V  
Sbjct: 5   YDYLF-----KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKL 59

Query: 64  TVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFML 117
            +WD  GQE+ R +   Y+  + G+I V D  D+E        F  +      I      
Sbjct: 60  QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES-------FNGVKMWLQEIDRYATS 112

Query: 118 NSVILVFANKQDMK 131
             + L+  NK D+K
Sbjct: 113 TVLKLLVGNKCDLK 126

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 20  VVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQEKL 74
           +V LG  + GKT+++ +        +   TIG  F  + +    + V   +WD  GQE+ 
Sbjct: 17  LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76

Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAK---QEFQAIIKDPFMLNSVILVFANKQDMK 131
           R L   Y  ++   + V D  +     +      + +         + +I++  NK D+ 
Sbjct: 77  RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTDLS 132

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 18/125 (14%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQE 72
            +VV++G    GK+ +L +    E  L +  TIG  F    +Q   K +   +WD  G E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFMLNSVILVFAN 126
           + R +   Y+    G + V D             ++ +      ++D    N VI++  N
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLT-------YENVERWLKELRDHADSNIVIMLVGN 142

Query: 127 KQDMK 131
           K D++
Sbjct: 143 KSDLR 147

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 5/117 (4%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGF----NVEKVQYKNVIFTVWDVGGQEK 73
           ++ V++G  A GKT +L                F        V  K V   +WD  GQE 
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
              L    +  TD  +     +        + ++   ++     N+ I++   K D+
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDL 121

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 22/133 (16%)

Query: 9   FDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIF 63
           +D  F     +++++G    GK+++L +        S + TIG  F +  V+   + V  
Sbjct: 6   YDHLF-----KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKL 60

Query: 64  TVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIK-----DPFMLN 118
            +WD  GQE+ R +   Y+  T G+I V D    E        F  + +     +    +
Sbjct: 61  QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAES-------FVNVKRWLHEINQNCDD 113

Query: 119 SVILVFANKQDMK 131
              ++  NK D  
Sbjct: 114 VCRILVGNKNDDP 126

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 18/125 (14%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQE 72
           ++V+++G    GKT+++ +        +   T+G  F ++ V+   K +   +WD  GQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFMLNSVILVFAN 126
           +   +   Y+ +  G+I V D   +E        F  +      I      ++ +L+  N
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKET-------FDDLPKWMKMIDKYASEDAELLLVGN 139

Query: 127 KQDMK 131
           K D +
Sbjct: 140 KLDCE 144

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 16/121 (13%), Positives = 46/121 (38%), Gaps = 12/121 (9%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEK---VQYKNVIFTVWDVGGQEK 73
           E+R+ +LG   +GK++++++   G       T     +K   V  +  +  + +  G   
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 66

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAI-IKDPFMLNSVILVFANKQD 129
            +     +    D +I+V    D    + + +   +  ++  +    L   ++   ++  
Sbjct: 67  AK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121

Query: 130 M 130
            
Sbjct: 122 A 122

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 9/124 (7%)

Query: 14  GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFN---VEKVQYKNVIFTVWDVG 69
           G  E+ + +LG   AGK+ +  K      +S   P +       E V ++ V   V D  
Sbjct: 18  GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTA 77

Query: 70  GQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
             +  R   R Y N     + V     R   +      +      K+       +L+  N
Sbjct: 78  DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLL-GN 135

Query: 127 KQDM 130
           K DM
Sbjct: 136 KLDM 139

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQEK 73
           +++++G    GK+++L +            TIG  F V+ +          +WD  GQE+
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
            R L   Y+    G+I V D   R+   K       +       + V ++  NK D 
Sbjct: 77  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 22/127 (17%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVE------KVQYKNVIFTVWDVGG 70
            + +++G    GK+ +L++    +    +  TIG  VE       V  K V   +WD  G
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIG--VEFGSKIINVGGKYVKLQIWDTAG 68

Query: 71  QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFMLNSVILVF 124
           QE+ R + R Y+    G + V D   RE        + A+       +     N VI++ 
Sbjct: 69  QERFRSVTRSYYRGAAGALLVYDITSRET-------YNALTNWLTDARMLASQNIVIILC 121

Query: 125 ANKQDMK 131
            NK+D+ 
Sbjct: 122 GNKKDLD 128

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 19/126 (15%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVL--STVPTIG--FNVEKVQY--KNVIFTVWDVGGQ 71
            +V+++G    GKT +L +   G  L  + + T+G  F  + +      V   +WD  GQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFMLNSVILVFA 125
           E+ R +   Y+ +   L+ + D  ++         F  I      I +    +  +++  
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKAS-------FDNIQAWLTEIHEYAQHDVALMLLG 123

Query: 126 NKQDMK 131
           NK D  
Sbjct: 124 NKVDSA 129

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 11/91 (12%)

Query: 14  GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFN---VEKVQYKNVIFTVWDVG 69
           G   ++ V++G  A GKT +L            VPT+  +      V  K  +  ++D  
Sbjct: 15  GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTA 74

Query: 70  GQE---KLRPLWRHYFNNTDGLIYVVDSLDR 97
           GQE   +LRPL    +  TD  + +  S+  
Sbjct: 75  GQEDYDRLRPL---SYPMTDVFL-ICFSVVN 101

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 18/125 (14%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQE 72
            ++V++G  + GKT ++ +   G        TIG  F ++ ++   K V   +WD  GQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI------IKDPFMLNSVILVFAN 126
           + R + + Y+ + +G I   D   R         F ++      ++     N V L+  N
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSS-------FLSVPHWIEDVRKYAGSNIVQLLIGN 142

Query: 127 KQDMK 131
           K D+ 
Sbjct: 143 KSDLS 147

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 10/122 (8%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY---KNVIFTVWDVGGQE 72
           ++V+LG  A+GKT++               TIG  F + ++      NV   +WD+GGQ 
Sbjct: 8   KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 129
               +   Y     G++ V D  +    E +       + + ++      ++ +  NK D
Sbjct: 68  IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET-QPLVALVGNKID 126

Query: 130 MK 131
           ++
Sbjct: 127 LE 128

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 44  STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKA 103
           + + T   N       N+ F +WD  GQE+   +   Y+      I V D  +   + +A
Sbjct: 76  NVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA 135

Query: 104 KQEFQAIIKDPFMLNSVILVFANKQDM 130
           K     +       N +I++ ANK D 
Sbjct: 136 KTWVNQLKISS---NYIIILVANKIDK 159

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 37.5 bits (88), Expect = 9e-04
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 20  VVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--FNVEKVQY--KNVIFTVWDVGGQEKL 74
           +V+LG   AGK++++ +    + V     TIG  F  + +      V F +WD  GQE+ 
Sbjct: 15  LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74

Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIK--DPFMLNSVILVFANKQDMK 131
             L   Y+      I V D  ++    +AK+  Q +    +P   N V+ +  NK D+ 
Sbjct: 75  HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP---NMVMALAGNKSDLL 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	100.0
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	100.0
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	100.0
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	100.0
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	100.0
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	100.0
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	100.0
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	100.0
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	100.0
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	100.0
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.98
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.98
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.98
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.98
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.98
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.98
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.98
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.98
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.98
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.98
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.98
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.98
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.98
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.98
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.98
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.98
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.98
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.98
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.98
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.97
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.97
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.97
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.97
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.97
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.97
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.97
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.97
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.97
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.97
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.97
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.97
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.97
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.97
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.97
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.97
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.97
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.97
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.97
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.97
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.97
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.97
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.97
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.97
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.97
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.97
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.97
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.97
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.97
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.97
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.97
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.92
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.95
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.95
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.94
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.94
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.94
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.91
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.91
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.89
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.89
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.89
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.89
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.89
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.89
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.89
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.88
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.88
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.88
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.87
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.87
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.87
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.87
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.87
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.87
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.87
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.86
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.86
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.86
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.86
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.85
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.85
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.84
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.84
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.84
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.84
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.83
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.82
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.82
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.82
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.81
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.81
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.81
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.81
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.8
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.8
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.8
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.8
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.78
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.76
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.75
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.74
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.72
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.72
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.71
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.71
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.71
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.7
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.7
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.69
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.67
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.66
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.65
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.64
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.64
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.63
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.61
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.6
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.58
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.57
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.56
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.56
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.5
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.34
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.34
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.32
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.29
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.09
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.08
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.97
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.96
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.93
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.93
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.87
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.85
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.82
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.74
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.73
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.63
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.55
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.47
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.33
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.33
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.32
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.07
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.98
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.86
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.8
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.77
2xxa_A	433	Signal recognition particle protein; protein trans	97.77
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.74
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.69
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.52
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.41
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.4
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.34
3end_A	307	Light-independent protochlorophyllide reductase ir	97.31
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.3
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.28
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.23
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.22
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.21
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.2
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.19
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.19
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.15
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.14
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.13
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.1
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.09
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.08
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.07
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.06
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.05
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.05
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.04
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.04
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.02
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.02
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.01
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.99
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.98
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.98
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.97
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.97
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.96
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.96
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.96
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.95
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.95
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.95
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.95
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.94
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.94
1g6h_A	257	High-affinity branched-chain amino acid transport	96.94
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.93
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.93
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.92
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.91
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.91
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.91
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.91
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.9
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.89
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.89
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.89
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.88
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.87
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.87
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.87
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.87
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.87
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.86
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.86
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.86
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.86
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.85
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.85
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.84
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.83
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.83
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.83
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.82
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.82
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.82
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.81
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.81
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.81
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.8
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.8
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.8
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.79
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.78
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.78
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.77
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.77
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.77
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.76
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.76
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.75
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.75
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.75
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.74
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.74
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.74
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.73
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.73
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.72
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.71
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.69
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.68
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.68
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.67
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.67
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.66
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.66
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.64
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.64
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.63
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.63
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.63
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.62
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.61
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.61
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.61
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.59
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.59
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.57
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.57
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.56
1via_A	175	Shikimate kinase; structural genomics, transferase	96.56
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.55
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.55
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.55
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.52
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.5
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.5
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.49
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.49
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.49
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.49
3bos_A	242	Putative DNA replication factor; P-loop containing	96.49
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.48
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.47
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.47
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.45
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.45
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.45
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.43
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.43
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.42
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.41
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.41
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.41
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.41
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.41
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.4
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.39
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.39
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.39
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.38
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.38
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.38
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.38
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.38
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.38
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.37
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.37
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.36
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.36
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.33
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.31
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.3
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.29
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.29
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.28
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.27
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.26
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.25
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.24
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.24
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.24
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.24
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.23
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.23
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.22
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.22
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.2
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.17
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.17
2og2_A	359	Putative signal recognition particle receptor; nuc	96.16
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.16
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.13
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.11
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.11
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.11
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.1
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.09
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.08
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.06
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.05
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.03
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.96
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.95
2qgz_A	308	Helicase loader, putative primosome component; str	95.94
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.94
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.94
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.93
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.93
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.92
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.91
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.9
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.9
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.9
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.85
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.84
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.83
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.82
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.8
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.8
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.8
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.77
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.74
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.71
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.71
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.71
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.7
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.68
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.68
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.66
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.64
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.61
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.6
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.6
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.6
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.59
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.59
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.57
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.57
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.56
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.55
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.54
3co5_A	143	Putative two-component system transcriptional RES	95.52
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.51
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.51
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.49
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.47
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.46
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.43
3uc9_A	233	Increased recombination centers protein 6; rossman	95.42
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.36
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.36
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.34
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.3
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.3
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.29
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.28
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.26
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	95.24
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.24
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.19
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.18
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.18
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.16
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.13
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.11
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.11
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.1
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	95.07
3pvs_A	447	Replication-associated recombination protein A; ma	95.05
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.04
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	95.03
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.02

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.6e-38  Score=222.41  Aligned_cols=180  Identities=46%  Similarity=0.814  Sum_probs=154.6

Q ss_pred             CchhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHh
Q 029446            1 MGQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   80 (193)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (193)
                      ||..++++++ +...+.++|+++|.+|+|||||++++.++.+..+.+|.+.+...+..++..+.+|||||+++++..+..
T Consensus         1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   79 (187)
T 1zj6_A            1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT   79 (187)
T ss_dssp             -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred             CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence            8888999988 777899999999999999999999999888877788988888888888999999999999999999999


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      +++++|++++|+|++++++++.+..|+..+.......+.|+++|+||+|+.+....+++.+.+....++..++++++|||
T Consensus        80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa  159 (187)
T 1zj6_A           80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA  159 (187)
T ss_dssp             HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred             HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence            99999999999999999999999999999877543468999999999999887667777777765555667789999999


Q ss_pred             ccCCCHHHHHHHHHHHHHhhh
Q 029446          161 LKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      ++|+|+++++++|.+.+....
T Consensus       160 ~~g~gi~~l~~~l~~~~~~~~  180 (187)
T 1zj6_A          160 LTGEGLCQGLEWMMSRLKIRL  180 (187)
T ss_dssp             TTTBTHHHHHHHHHHHHCC--
T ss_pred             CCCcCHHHHHHHHHHHHHHHh
Confidence            999999999999999885444

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=8.6e-38  Score=219.48  Aligned_cols=181  Identities=50%  Similarity=0.962  Sum_probs=158.4

Q ss_pred             CchhHHHHhhhhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHH
Q 029446            1 MGQAFRKLFDVFFG-NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWR   79 (193)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (193)
                      ||..+.++++.+.. .+.++|+++|++|+|||||++++.++.+..+.+|.+.....+.+.+..+.+||+||+++++..+.
T Consensus         1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   80 (183)
T 1moz_A            1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR   80 (183)
T ss_dssp             -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred             CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence            88889999998877 89999999999999999999999988887778899988888888889999999999999999999


Q ss_pred             hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEec
Q 029446           80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC  159 (193)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (193)
                      .+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+....+++.+.++.......+++++++|
T Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  160 (183)
T 1moz_A           81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS  160 (183)
T ss_dssp             GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence            99999999999999999999999999999987764457899999999999988777778888777666666788999999


Q ss_pred             cccCCCHHHHHHHHHHHHHhhh
Q 029446          160 ALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       160 a~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      |++|+|+++++++|.+.+.+++
T Consensus       161 a~~~~gi~~l~~~l~~~~~~~q  182 (183)
T 1moz_A          161 AIKGEGITEGLDWLIDVIKEEQ  182 (183)
T ss_dssp             GGGTBTHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhcc
Confidence            9999999999999999987654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=100.00  E-value=1.3e-37  Score=219.81  Aligned_cols=181  Identities=49%  Similarity=0.906  Sum_probs=157.9

Q ss_pred             CchhHHHHhh--hhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHh
Q 029446            1 MGQAFRKLFD--VFFG-NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL   77 (193)
Q Consensus         1 ~~~~~~~~~~--~~~~-~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (193)
                      ||..+.++++  +... ++.++|+++|++|+|||||++++.++.+..+.||.+.....+......+.+|||||+++++..
T Consensus         3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~   82 (189)
T 2x77_A            3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY   82 (189)
T ss_dssp             ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred             hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence            6656666666  5555 789999999999999999999999988877788999888888888999999999999999999


Q ss_pred             HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEE
Q 029446           78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQG  157 (193)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (193)
                      +..+++++|++++|+|++++++++....++..+.......+.|+++|+||+|+.+....+++.+.+....++..++++++
T Consensus        83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (189)
T 2x77_A           83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK  162 (189)
T ss_dssp             CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence            99999999999999999999999999999999887655578999999999999887777788887776666777889999


Q ss_pred             eccccCCCHHHHHHHHHHHHHhhh
Q 029446          158 TCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       158 ~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      |||++++|+++++++|.+.+.++.
T Consensus       163 ~Sa~~~~gi~~l~~~l~~~i~~~~  186 (189)
T 2x77_A          163 SSSKTGDGLVEGMDWLVERLREQG  186 (189)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcc
Confidence            999999999999999999987654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=100.00  E-value=4.6e-37  Score=217.77  Aligned_cols=173  Identities=59%  Similarity=1.083  Sum_probs=150.2

Q ss_pred             HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446            7 KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTD   86 (193)
Q Consensus         7 ~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (193)
                      .++++....+.++|+++|++|+|||||++++.++.+..+.||.+.....+......+.+||+||+++++..+..+++++|
T Consensus        19 ~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   98 (192)
T 2b6h_A           19 SLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ   98 (192)
T ss_dssp             CGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred             HHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence            45677777889999999999999999999999988887788999888888888999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      ++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+....+++.+.++....+..++++++|||++|.|+
T Consensus        99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi  178 (192)
T 2b6h_A           99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGL  178 (192)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence            99999999999999999999999877544568999999999999887777888888877666777889999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 029446          167 YEGLDWLASTLKE  179 (193)
Q Consensus       167 ~~~~~~l~~~~~~  179 (193)
                      ++++++|.+.+.+
T Consensus       179 ~~l~~~l~~~i~~  191 (192)
T 2b6h_A          179 YDGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=100.00  E-value=1e-36  Score=214.68  Aligned_cols=178  Identities=40%  Similarity=0.782  Sum_probs=148.2

Q ss_pred             CchhHHHHhhhhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHH
Q 029446            1 MGQAFRKLFDVFFG-NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWR   79 (193)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (193)
                      || .+. ++.+... .+.++|+++|++|+|||||++++.++....+.||.+.....+..+...+.+|||||++++...+.
T Consensus         3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~   80 (186)
T 1ksh_A            3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR   80 (186)
T ss_dssp             ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred             cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence            45 443 4444444 68899999999999999999999998855778899988888888899999999999999999999


Q ss_pred             hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEec
Q 029446           80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC  159 (193)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (193)
                      .+++++|++++|+|++++.+++++..|+..+.......+.|+++|+||+|+.+....+++.+.+.....+..+++++++|
T Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1ksh_A           81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS  160 (186)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence            99999999999999999999999999999987754446899999999999988777777777776655566788999999


Q ss_pred             cccCCCHHHHHHHHHHHHHhh
Q 029446          160 ALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       160 a~~~~gi~~~~~~l~~~~~~~  180 (193)
                      |++|+|+++++++|.+.+.++
T Consensus       161 a~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          161 AVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999998765

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=100.00  E-value=1.8e-36  Score=212.75  Aligned_cols=166  Identities=42%  Similarity=0.814  Sum_probs=146.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (193)
                      .+.++|+++|++|+|||||++++.+..+..+.||.+.+...+..+...+.+||+||++.++..+..+++++|++++|+|+
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS   93 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence            67899999999999999999999998877778899988888888899999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446           95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  174 (193)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  174 (193)
                      +++.+++.+..|+..++......+.|+++|+||+|+.+....+++.+.++...+...++++++|||++|+|+++++++|.
T Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  173 (181)
T 1fzq_A           94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC  173 (181)
T ss_dssp             TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence            99999999999998887654446799999999999988766777777776655566778999999999999999999999


Q ss_pred             HHHHhh
Q 029446          175 STLKEM  180 (193)
Q Consensus       175 ~~~~~~  180 (193)
                      +.+.++
T Consensus       174 ~~~~~~  179 (181)
T 1fzq_A          174 KNVNAK  179 (181)
T ss_dssp             HTC---
T ss_pred             HHHHhc
Confidence            887543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=100.00  E-value=5.9e-36  Score=207.74  Aligned_cols=166  Identities=56%  Similarity=0.981  Sum_probs=150.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (193)
                      .+.++|+++|++|+|||||++++.++.+..+.||.+.....+.+....+.+|||||++.+...+..+++++|++++|+|+
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   84 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS   84 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence            46799999999999999999999999888888899988888888999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446           95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  174 (193)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  174 (193)
                      +++.+++....|+..+.......+.|+++|+||+|+.+....+++.+.+....++..+++++++||++|+|+++++++|.
T Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  164 (171)
T 1upt_A           85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV  164 (171)
T ss_dssp             TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence            99999999999999887754446899999999999988777778888877666677888999999999999999999999


Q ss_pred             HHHHhh
Q 029446          175 STLKEM  180 (193)
Q Consensus       175 ~~~~~~  180 (193)
                      +.+.++
T Consensus       165 ~~i~~~  170 (171)
T 1upt_A          165 ETLKSR  170 (171)
T ss_dssp             HHHHTC
T ss_pred             HHHhhc
Confidence            988654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=100.00  E-value=3.3e-36  Score=207.77  Aligned_cols=163  Identities=61%  Similarity=1.124  Sum_probs=144.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   97 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (193)
                      +||+++|++|+|||||++++.++.+..+.||.+.....+......+.+||+||+++++..+..+++++|++++|+|++++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   80 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence            58999999999999999999998888778899888888888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446           98 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      .+++....|+..+.......+.|+++|+||+|+.+....+++.+.++...++..++++++|||++|.|+++++++|.+.+
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  160 (164)
T 1r8s_A           81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (164)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence            99999999999887754456899999999999988767778888777666677788999999999999999999999987


Q ss_pred             Hhh
Q 029446          178 KEM  180 (193)
Q Consensus       178 ~~~  180 (193)
                      .++
T Consensus       161 ~~~  163 (164)
T 1r8s_A          161 RNQ  163 (164)
T ss_dssp             ---
T ss_pred             hhc
Confidence            543

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.3e-37  Score=223.95  Aligned_cols=161  Identities=19%  Similarity=0.281  Sum_probs=123.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEE--EE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKV--QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      +.+.|||+|+|++|||||||+++|..+.+. .+.||++.++...  ..  ..+.+.||||+|+++|+.+++.++++++++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            457899999999999999999999999887 4678888775432  22  457899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      ++|||++++.+|+++..|+..+.... ..+.|+|||+||+|+.+..  ..++.. .+    ++..+++|++|||++|+||
T Consensus        90 ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~-~~----a~~~~~~~~e~SAktg~nV  163 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGE-RK----AKELNVMFIETSAKAGYNV  163 (216)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEEEBTTTTBSH
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHh-hH----HHHhCCeeEEEeCCCCcCH
Confidence            99999999999999999999987643 3679999999999987642  222221 11    2334568999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029446          167 YEGLDWLASTLKEM  180 (193)
Q Consensus       167 ~~~~~~l~~~~~~~  180 (193)
                      +++|+.|++.+...
T Consensus       164 ~e~F~~i~~~i~~~  177 (216)
T 4dkx_A          164 KQLFRRVAAALPGM  177 (216)
T ss_dssp             HHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988644

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=100.00  E-value=2.7e-35  Score=208.35  Aligned_cols=164  Identities=29%  Similarity=0.524  Sum_probs=140.4

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      ...+.++|+++|++|+|||||++++.++.+..+.+|.+.+...+..++..+.+|||||+++++..+..+++++|++++|+
T Consensus        19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   98 (190)
T 1m2o_B           19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV   98 (190)
T ss_dssp             -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence            34567899999999999999999999998888888999988888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc-------CCCCceEEEEeccccCCC
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD-------LKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~g  165 (193)
                      |++++.+++++..|+..+.......+.|+++|+||+|+.+....+++.+.+....       .+..++++++|||++|+|
T Consensus        99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  178 (190)
T 1m2o_B           99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG  178 (190)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred             ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence            9999999999999999987654446899999999999988666677776665432       234567899999999999


Q ss_pred             HHHHHHHHHHH
Q 029446          166 LYEGLDWLAST  176 (193)
Q Consensus       166 i~~~~~~l~~~  176 (193)
                      +++++++|.+.
T Consensus       179 i~~l~~~l~~~  189 (190)
T 1m2o_B          179 YLEAFQWLSQY  189 (190)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhh
Confidence            99999999764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=1.3e-35  Score=210.97  Aligned_cols=171  Identities=39%  Similarity=0.608  Sum_probs=145.9

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--cccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS--TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      .+....++|+++|.+|+|||||+++|.++.+..  +.+|.+.....+......+.+|||||++++...+..+++++|+++
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   91 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI   91 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence            345678999999999999999999999998875  378999888888889999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCC-------CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-CCCceEEEEeccc
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFM-------LNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCAL  161 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~  161 (193)
                      +|+|++++.+|+.+..|+..+......       .+.|+|+|+||+|+.+....+++.+.++...+ +..++++++|||+
T Consensus        92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  171 (199)
T 4bas_A           92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGL  171 (199)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTT
T ss_pred             EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCC
Confidence            999999999999999999988764211       37899999999999988777788777765444 5678899999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhhc
Q 029446          162 KGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~~~~  182 (193)
                      +|+|+++++++|.+.+.+...
T Consensus       172 ~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          172 KGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             TTBTHHHHHHHHHHHHHHHC-
T ss_pred             CccCHHHHHHHHHHHHHHHhc
Confidence            999999999999999987654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=100.00  E-value=2.7e-35  Score=207.93  Aligned_cols=167  Identities=30%  Similarity=0.610  Sum_probs=147.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      ....++|+++|.+|+|||||+++|.++.+. .+.+|.+.++..+......+.+||+||++++...+..+++++|++++|+
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   98 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV   98 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence            356799999999999999999999998876 5678999998888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  172 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  172 (193)
                      |++++.+++.+..|+..+.......+.|+++|+||+|+.+....+++.+.+....+...++++++|||++|.|+++++++
T Consensus        99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~  178 (188)
T 1zd9_A           99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW  178 (188)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999877544468999999999999887667777777776556667889999999999999999999


Q ss_pred             HHHHHHhh
Q 029446          173 LASTLKEM  180 (193)
Q Consensus       173 l~~~~~~~  180 (193)
                      |.+.+.++
T Consensus       179 l~~~~~~~  186 (188)
T 1zd9_A          179 LIQHSKSR  186 (188)
T ss_dssp             HHHTCC--
T ss_pred             HHHHHHhh
Confidence            99887544

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=100.00  E-value=2.7e-35  Score=206.70  Aligned_cols=164  Identities=47%  Similarity=0.832  Sum_probs=144.0

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      ...+.++|+++|.+|+|||||+++|.++.+..+.+|.+.....+..++..+.+||+||+++++..+..+++++|++++|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~   96 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV   96 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence            34577999999999999999999999998877788888888888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  172 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  172 (193)
                      |++++.+++.+..|+..+.......+.|+++|+||+|+.+....+++.+.+.....+..++++++|||++|+|+++++++
T Consensus        97 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  176 (181)
T 2h17_A           97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEW  176 (181)
T ss_dssp             ETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHH
Confidence            99999999999999999877543468999999999999887677788877776666677889999999999999999999


Q ss_pred             HHHH
Q 029446          173 LAST  176 (193)
Q Consensus       173 l~~~  176 (193)
                      |.+.
T Consensus       177 l~~~  180 (181)
T 2h17_A          177 MMSR  180 (181)
T ss_dssp             HHTC
T ss_pred             HHhh
Confidence            8764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=100.00  E-value=1.1e-34  Score=206.54  Aligned_cols=165  Identities=32%  Similarity=0.562  Sum_probs=133.3

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      ...+.++|+++|++|||||||++++.++.+..+.+|.+.+...+..++..+.+|||||+++++..+..+++++|++++|+
T Consensus        21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~  100 (198)
T 1f6b_A           21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV  100 (198)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence            44678999999999999999999999988877788888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc---------C---CCCceEEEEecc
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD---------L---KNRKWHIQGTCA  160 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa  160 (193)
                      |++++.+++++..|+..+.......+.|+++|+||+|+.+....+++.+.+....         +   ....+++++|||
T Consensus       101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  180 (198)
T 1f6b_A          101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV  180 (198)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred             ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence            9999999999999999987754446899999999999987666666666555321         1   125678999999


Q ss_pred             ccCCCHHHHHHHHHHHH
Q 029446          161 LKGDGLYEGLDWLASTL  177 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~  177 (193)
                      ++|+|+++++++|.+.+
T Consensus       181 ~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          181 LKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             TTTBSHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            99999999999997653

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-34  Score=202.63  Aligned_cols=166  Identities=42%  Similarity=0.760  Sum_probs=142.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC-cc-ccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGE-VL-STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~-~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      ..+.++|+++|.+|+|||||+++|.+.. +. .+.+|.+.....+..++..+.+|||||+++++..+..+++++|++++|
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   97 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV   97 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            3578999999999999999999999887 33 567888888888888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCC--CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFM--LNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|++++.+++.+..|+..+......  .+.|+++|+||+|+.+....+++.+.+....+...++++++|||++|+|++++
T Consensus        98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  177 (190)
T 2h57_A           98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEG  177 (190)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence            9999999999999999998876444  57999999999999887677777776654444556789999999999999999


Q ss_pred             HHHHHHHHHh
Q 029446          170 LDWLASTLKE  179 (193)
Q Consensus       170 ~~~l~~~~~~  179 (193)
                      +++|.+.+.+
T Consensus       178 ~~~l~~~i~~  187 (190)
T 2h57_A          178 VDWLQDQIQT  187 (190)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.7e-34  Score=216.06  Aligned_cols=166  Identities=61%  Similarity=1.113  Sum_probs=147.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (193)
                      .+.++|+|+|.+|+|||||+++|.++.+....||.+..+..+....+.+.+|||||++.+...+..+++++|++|+|||+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~  242 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS  242 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEET
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            46789999999999999999999999887777899999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446           95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  174 (193)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  174 (193)
                      +++.+++.+..++..++......++|+|+|+||+|+.+....+++...++...++..+++++++||++|+||++++++|.
T Consensus       243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~  322 (329)
T 3o47_A          243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS  322 (329)
T ss_dssp             TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHH
Confidence            99999999999999988765556899999999999998878888888888877778889999999999999999999999


Q ss_pred             HHHHhh
Q 029446          175 STLKEM  180 (193)
Q Consensus       175 ~~~~~~  180 (193)
                      +.+.++
T Consensus       323 ~~l~~~  328 (329)
T 3o47_A          323 NQLRNQ  328 (329)
T ss_dssp             HHHTC-
T ss_pred             HHHHhc
Confidence            988543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.1e-34  Score=201.89  Aligned_cols=172  Identities=17%  Similarity=0.196  Sum_probs=133.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ..+.++|+++|++|+|||||+++|.++.+. .+.+|.+..+. .+...+  +.+.+||+||++++...+..+++++|+++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            346799999999999999999999987766 45677776653 233343  78899999999999989999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+...  .++..+ +    ++..+++++++||++++|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~  157 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKA-L----AESWNAAFLESSAKENQTAV  157 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHH-H----HHHTTCEEEECCTTSHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHH-H----HHHhCCcEEEEecCCCCCHH
Confidence            9999999999999999998887755556899999999999865422  222221 1    12335589999999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCcCC
Q 029446          168 EGLDWLASTLKEMRAAGYSSVGTSS  192 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~~~~~~~~~~~  192 (193)
                      ++|++|.+.+.+..  +..++|+||
T Consensus       158 ~l~~~l~~~~~~~~--~~~~~gkss  180 (181)
T 3t5g_A          158 DVFRRIILEAEKMD--GACSQGKSS  180 (181)
T ss_dssp             HHHHHHHHHHHTC-------CCBSC
T ss_pred             HHHHHHHHHHHHhc--CCcccCcCC
Confidence            99999999997766  667777775

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=1.3e-33  Score=195.02  Aligned_cols=160  Identities=15%  Similarity=0.125  Sum_probs=107.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD   93 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   93 (193)
                      .+||+++|++|+|||||++++.+.......++.+.++.. +..  ....+.+||+||++.+...+..+++++|++++|+|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   81 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence            589999999999999999999987776555666555432 222  46789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446           94 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  172 (193)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  172 (193)
                      ++++.+++.+..|+..+.......+.|+++|+||+|+.+.... .+..+.+    ....+++++++||++|+|+++++++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~l~~~  157 (166)
T 3q72_A           82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC----AVVFDCKFIETSAALHHNVQALFEG  157 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHH----HHHTTCEEEECBGGGTBSHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHH----HHHhCCcEEEeccCCCCCHHHHHHH
Confidence            9999999999999999887655578999999999999764322 1111111    1223458999999999999999999


Q ss_pred             HHHHHHhh
Q 029446          173 LASTLKEM  180 (193)
Q Consensus       173 l~~~~~~~  180 (193)
                      |.+.+.++
T Consensus       158 l~~~~~~~  165 (166)
T 3q72_A          158 VVRQIRLR  165 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99988764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2e-32  Score=193.79  Aligned_cols=173  Identities=19%  Similarity=0.312  Sum_probs=132.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ...++|+++|++|+|||||+++|.+..+. .+.+|.+.++.  .+..  ....+.+||+||++.+...+..+++++|+++
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            35689999999999999999999998876 45677776654  3333  3578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      +|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++..+ +    ++..+++++++||+++.|+++
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~  167 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLK-F----ARKHSMLFIEASAKTCDGVQC  167 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHH-H----HHHcCCEEEEecCCCCCCHHH
Confidence            9999999999999999988887654446899999999999965422 222222 1    123346899999999999999


Q ss_pred             HHHHHHHHHHhhhc---cCCCCCCcCC
Q 029446          169 GLDWLASTLKEMRA---AGYSSVGTSS  192 (193)
Q Consensus       169 ~~~~l~~~~~~~~~---~~~~~~~~~~  192 (193)
                      ++++|.+.+.+...   ....++||||
T Consensus       168 l~~~l~~~~~~~~~~~~~~~~n~gkSs  194 (195)
T 1x3s_A          168 AFEELVEKIIQTPGLWESENQNSGPSS  194 (195)
T ss_dssp             HHHHHHHHHHTSGGGTCC---------
T ss_pred             HHHHHHHHHHhhhhhhcccccCCCCCC
Confidence            99999999876542   3556777775

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=4.9e-33  Score=193.67  Aligned_cols=163  Identities=17%  Similarity=0.095  Sum_probs=119.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeE--EEEEEc--CEEEEEEecCCCCC--CHHhHHhhhcCCCEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV--EKVQYK--NVIFTVWDVGGQEK--LRPLWRHYFNNTDGL   88 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~--~~~~~~~~~~~~d~~   88 (193)
                      .+.+||+++|++|+|||||+++|.+..+....++.+.+.  ..+...  .+.+.+||+||++.  +......+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            467999999999999999999999988775555666553  334443  46899999999988  567778888999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      ++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+...  .++.. .+    ....+++++++||++|+|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~g~gi  156 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGR-AC----AVVFDCKFIETSATLQHNV  156 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHH-HH----HHHHTSEEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHH-HH----HHHcCCeEEEEecCCCCCH
Confidence            99999999999999999988887654446899999999999976422  22221 11    1123458999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029446          167 YEGLDWLASTLKEMRA  182 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~~  182 (193)
                      ++++++|.+.+.+++.
T Consensus       157 ~~l~~~l~~~~~~~~~  172 (175)
T 2nzj_A          157 AELFEGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999876553

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=7.8e-33  Score=193.55  Aligned_cols=168  Identities=15%  Similarity=0.213  Sum_probs=134.1

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      +....++|+++|.+|+|||||++++.++.+. .+.+|.+..+. .+...  ...+.+||+||++++...+..+++++|++
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            4467899999999999999999999998776 45677776654 23444  36899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      ++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.... .+..+.+.    ...+++++++||++|.|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~  160 (181)
T 2fn4_A           85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG----ASHHVAYFEASAKLRLNVD  160 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH----HHTTCEEEECBTTTTBSHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEecCCCCCCHH
Confidence            999999999999999999988866444468999999999999763221 12222221    2335689999999999999


Q ss_pred             HHHHHHHHHHHhhhccC
Q 029446          168 EGLDWLASTLKEMRAAG  184 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~~~  184 (193)
                      +++++|.+.+.+.....
T Consensus       161 ~l~~~l~~~~~~~~~~~  177 (181)
T 2fn4_A          161 EAFEQLVRAVRKYQEQE  177 (181)
T ss_dssp             HHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHhhccC
Confidence            99999999998766533

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=4.4e-32  Score=192.29  Aligned_cols=167  Identities=19%  Similarity=0.210  Sum_probs=131.7

Q ss_pred             hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------ccccceeEEEE-----EEcCEEEEEEecCCCCC
Q 029446           10 DVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-----------VPTIGFNVEKV-----QYKNVIFTVWDVGGQEK   73 (193)
Q Consensus        10 ~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~~-----~~~~~~~~i~D~~g~~~   73 (193)
                      +.......+||+++|++|+|||||++.+.+.....+           .+|.+.++...     ....+.+.+|||||+++
T Consensus         7 ~~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   86 (198)
T 3t1o_A            7 NFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF   86 (198)
T ss_dssp             ETTTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred             chhccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence            334456789999999999999999987776544332           24555554432     22457899999999999


Q ss_pred             CHHhHHhhhcCCCEEEEEEECC------ChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCc
Q 029446           74 LRPLWRHYFNNTDGLIYVVDSL------DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD  147 (193)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  147 (193)
                      +...+..+++++|++++|+|++      +..++..+..|+..+..  ...+.|+++|+||+|+.+....++..+...   
T Consensus        87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---  161 (198)
T 3t1o_A           87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPDALPVEMVRAVVD---  161 (198)
T ss_dssp             CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTTCCCHHHHHHHHC---
T ss_pred             HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhcccccCHHHHHHHHH---
Confidence            9999999999999999999999      56778888888877632  347899999999999988766666655443   


Q ss_pred             CCCCce-EEEEeccccCCCHHHHHHHHHHHHHhhhcc
Q 029446          148 LKNRKW-HIQGTCALKGDGLYEGLDWLASTLKEMRAA  183 (193)
Q Consensus       148 ~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~  183 (193)
                        ..++ +++++||++|+|+++++++|.+.+.++...
T Consensus       162 --~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          162 --PEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             --TTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             --hcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence              3455 899999999999999999999999877643

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=8.2e-33  Score=195.50  Aligned_cols=168  Identities=18%  Similarity=0.292  Sum_probs=134.7

Q ss_pred             hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE---EEEEc-----------CEEEEEEecCCCCCCH
Q 029446           11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE---KVQYK-----------NVIFTVWDVGGQEKLR   75 (193)
Q Consensus        11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~-----------~~~~~i~D~~g~~~~~   75 (193)
                      ....+..++|+++|++|+|||||++++.++.+. .+.+|.+.++.   .+...           ...+.+||+||++++.
T Consensus         5 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   84 (195)
T 3bc1_A            5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR   84 (195)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH
T ss_pred             ccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH
Confidence            334567799999999999999999999998876 45678887765   33333           4689999999999999


Q ss_pred             HhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCce
Q 029446           76 PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKW  153 (193)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~  153 (193)
                      ..+..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.  ...++..+..     +..++
T Consensus        85 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~  159 (195)
T 3bc1_A           85 SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA-----EKYGI  159 (195)
T ss_dssp             HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTC
T ss_pred             HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCC
Confidence            9999999999999999999999999999988888876544468999999999999763  2222222211     12234


Q ss_pred             EEEEeccccCCCHHHHHHHHHHHHHhhhcc
Q 029446          154 HIQGTCALKGDGLYEGLDWLASTLKEMRAA  183 (193)
Q Consensus       154 ~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~  183 (193)
                      +++++||+++.|+++++++|.+.+.++...
T Consensus       160 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  189 (195)
T 3bc1_A          160 PYFETSAANGTNISHAIEMLLDLIMKRMER  189 (195)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence            799999999999999999999999876654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=2.5e-33  Score=196.77  Aligned_cols=166  Identities=17%  Similarity=0.314  Sum_probs=106.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      +..++|+++|++|+|||||+++|.++.+. .+.+|.+.++.  .+..++  ..+.+||+||++++...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            46799999999999999999999988776 45677776654  444444  88999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..  ..++..+ +    ++..+++++++||++|+|++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~  159 (183)
T 2fu5_C           86 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEK-L----ALDYGIKFMETSAKANINVE  159 (183)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHH-H----HHHHTCEEEECCC---CCHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHH-H----HHHcCCeEEEEeCCCCCCHH
Confidence            999999999999999888887653 23579999999999997642  2222221 1    12234589999999999999


Q ss_pred             HHHHHHHHHHHhhhccCCC
Q 029446          168 EGLDWLASTLKEMRAAGYS  186 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~~~~~  186 (193)
                      +++++|.+.+.++......
T Consensus       160 ~l~~~l~~~i~~~~~~~~~  178 (183)
T 2fu5_C          160 NAFFTLARDIKAKMDKNWK  178 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhhcccc
Confidence            9999999999876654443

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=4.9e-33  Score=192.61  Aligned_cols=158  Identities=23%  Similarity=0.350  Sum_probs=126.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ..++|+++|++|+|||||++++.++.+. .+.++.+.+..  .+..  ....+.+||+||++++...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            3589999999999999999999998876 45677776653  3333  35689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      |+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...    ..+..+.+    ++..+++++++||++|.|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~----~~~~~~~~~~~Sa~~~~gi  156 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKL----AEEKGLLFFETSAKTGENV  156 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHH----HHHHTCEEEECCTTTCTTH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHH----HHHcCCEEEEEeCCCCCCH
Confidence            999999999999999888876643 36899999999999876421    11111111    1233458999999999999


Q ss_pred             HHHHHHHHHHHH
Q 029446          167 YEGLDWLASTLK  178 (193)
Q Consensus       167 ~~~~~~l~~~~~  178 (193)
                      ++++++|.+.+.
T Consensus       157 ~~l~~~l~~~i~  168 (170)
T 1ek0_A          157 NDVFLGIGEKIP  168 (170)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHh
Confidence            999999987663

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.4e-32  Score=191.96  Aligned_cols=166  Identities=18%  Similarity=0.274  Sum_probs=128.7

Q ss_pred             HhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhh
Q 029446            8 LFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYF   82 (193)
Q Consensus         8 ~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~   82 (193)
                      ........+.++|+++|.+|+|||||++++.+..+. .+.+|.+.++.  .+..  ....+.+||+||++++...+..++
T Consensus         6 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   85 (179)
T 1z0f_A            6 ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYY   85 (179)
T ss_dssp             -----CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHH
T ss_pred             CCCccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHh
Confidence            333344567899999999999999999999998876 35566665543  3334  357899999999999999999999


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      +++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ..++..+..     +..+++++++||
T Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa  159 (179)
T 1z0f_A           86 RGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASA  159 (179)
T ss_dssp             HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCT
T ss_pred             ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeC
Confidence            99999999999999999999988888776542 2579999999999997532  222222211     223468999999


Q ss_pred             ccCCCHHHHHHHHHHHHHh
Q 029446          161 LKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~  179 (193)
                      ++++|+++++++|.+.+.+
T Consensus       160 ~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          160 KTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999988754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1e-32  Score=193.58  Aligned_cols=162  Identities=19%  Similarity=0.200  Sum_probs=129.1

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      .....+||+++|++|+|||||++++.++.+. .+.+|.+..+.. +...  .+.+.+||+||++.+...+..+++++|++
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   93 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF   93 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            3457899999999999999999999988776 455676655532 3333  45677899999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccc-cCCC
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCAL-KGDG  165 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~g  165 (193)
                      ++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+..  ..++..+ +    ++..+++++++||+ +++|
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~~~  168 (183)
T 3kkq_A           94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE-M----ATKYNIPYIETSAKDPPLN  168 (183)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH-H----HHHHTCCEEEEBCSSSCBS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHH-H----HHHhCCeEEEeccCCCCCC
Confidence            9999999999999999998888764444689999999999987632  2222211 1    11223579999999 9999


Q ss_pred             HHHHHHHHHHHHHh
Q 029446          166 LYEGLDWLASTLKE  179 (193)
Q Consensus       166 i~~~~~~l~~~~~~  179 (193)
                      ++++|++|.+.+.+
T Consensus       169 v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          169 VDKTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998865

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=2.3e-32  Score=193.72  Aligned_cols=165  Identities=21%  Similarity=0.350  Sum_probs=130.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      +..++|+++|++|+|||||+++|.++.+. .+.++.+.++.  .+...+  +.+.+||+||++.+...+..+++++|+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            46799999999999999999999998876 45567665554  444444  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..... +..+.+    .+..+++++++||+++.|+++
T Consensus        94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gv~~  168 (196)
T 3tkl_A           94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEF----ADSLGIPFLETSAKNATNVEQ  168 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHH----HHHTTCCEEEECTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHH----HHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999998888776542 3589999999999997653221 111111    122345799999999999999


Q ss_pred             HHHHHHHHHHhhhccC
Q 029446          169 GLDWLASTLKEMRAAG  184 (193)
Q Consensus       169 ~~~~l~~~~~~~~~~~  184 (193)
                      +|++|.+.+.++...+
T Consensus       169 l~~~l~~~i~~~~~~~  184 (196)
T 3tkl_A          169 SFMTMAAEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999998877543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=2.2e-31  Score=187.37  Aligned_cols=160  Identities=15%  Similarity=0.237  Sum_probs=124.8

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      ......+||+++|++|||||||++++.++.+.. +.+|.+.....+...+  +.+.+|||+|++.++     +++++|++
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~   89 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV   89 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence            345678999999999999999999999998774 4566443333455544  778899999998877     67889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCC-ceEEEEeccccC
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNR-KWHIQGTCALKG  163 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~  163 (193)
                      ++|||++++.+++.+..|+..+.......+.|+++|+||+|+...    ...++..+..     +.. .+++++|||++|
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa~~~  164 (184)
T 3ihw_A           90 VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS-----TDLKRCTYYETCATYG  164 (184)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH-----HHTTTCEEEEEBTTTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH-----HHcCCCeEEEecCCCC
Confidence            999999999999999999999876544467999999999998531    2222222111     112 258999999999


Q ss_pred             CCHHHHHHHHHHHHHhhh
Q 029446          164 DGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~~~  181 (193)
                      +|++++|++|.+.+.+.+
T Consensus       165 ~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          165 LNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             BTHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            999999999999987665

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.2e-32  Score=194.99  Aligned_cols=163  Identities=21%  Similarity=0.305  Sum_probs=126.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeE--EEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      ..+.+||+++|++|+|||||+++|.++.+. .+.+|.+.++  ..+..++  +.+.+||+||++++...+..+++++|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            356799999999999999999999998876 4567766554  3455544  7999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCce-EEEEeccccCCC
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDG  165 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  165 (193)
                      ++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++..+..     +..++ ++++|||++++|
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g~g  179 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLA-----EHYDILCAIETSAKDSSN  179 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCSEEEECBTTTTBS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHH-----HHcCCCEEEEEeCCCCCC
Confidence            99999999999999998888876542 367999999999999763  2233332211     22345 899999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 029446          166 LYEGLDWLASTLKEMRA  182 (193)
Q Consensus       166 i~~~~~~l~~~~~~~~~  182 (193)
                      +++++++|.+.+.++..
T Consensus       180 i~~l~~~l~~~i~~~~~  196 (201)
T 2hup_A          180 VEEAFLRVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999977653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.8e-33  Score=198.32  Aligned_cols=167  Identities=14%  Similarity=0.119  Sum_probs=127.4

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE---EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~---~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      .+..+.+||+++|.+|+|||||+++|.++.+. .+.+|.+..+..   +....+.+.+|||||++++...+..+++++|+
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            44567899999999999999999999998877 345676655432   22357889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      +++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+..... +..+.+    .+..+++++++||++|.|+
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~~~Sa~~~~~v  174 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKL----AESWGATFMESSARENQLT  174 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHH----HHHHTCEEEECCTTCHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHH----HHHhCCeEEEEeCCCCCCH
Confidence            99999999999999999999998776555689999999999987542211 111111    1233458999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029446          167 YEGLDWLASTLKEMRA  182 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~~  182 (193)
                      +++|++|.+.+.+...
T Consensus       175 ~~l~~~l~~~i~~~~~  190 (201)
T 3oes_A          175 QGIFTKVIQEIARVEN  190 (201)
T ss_dssp             HHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999999977664

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.98  E-value=2.2e-32  Score=188.89  Aligned_cols=159  Identities=19%  Similarity=0.238  Sum_probs=125.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      ..++|+++|++|+|||||++++.++.+. .+.+|.+..+. .+...  .+.+.+||+||++++...+..+++++|++++|
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            5689999999999999999999988876 44566665553 23343  46899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|++++.+++.+..|+..+.......+.|+++|+||+|+.+..  ..++.....     +..+++++++||+++.|++++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T 1u8z_A           83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKV  157 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHHH
Confidence            9999999999999988888765444689999999999987532  222222211     223458999999999999999


Q ss_pred             HHHHHHHHHh
Q 029446          170 LDWLASTLKE  179 (193)
Q Consensus       170 ~~~l~~~~~~  179 (193)
                      +++|.+.+.+
T Consensus       158 ~~~l~~~i~~  167 (168)
T 1u8z_A          158 FFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998854

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.98  E-value=1.5e-31  Score=188.26  Aligned_cols=164  Identities=16%  Similarity=0.272  Sum_probs=127.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      +..++|+++|++|+|||||+++|.+..+.. +.+|.+..+. .+...  ...+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            467999999999999999999999888763 4455544333 33333  4568899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      |+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.....+..+.+.    +..+++++++||++|.|+++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~  157 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYGIPFIETSAKTRQGVDDAF  157 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999998887755557899999999999986543322222221    1223479999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 029446          171 DWLASTLKEMRA  182 (193)
Q Consensus       171 ~~l~~~~~~~~~  182 (193)
                      ++|.+.+.+...
T Consensus       158 ~~l~~~~~~~~~  169 (189)
T 4dsu_A          158 YTLVREIRKHKE  169 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhh
Confidence            999998876553

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.98  E-value=2e-32  Score=189.12  Aligned_cols=158  Identities=17%  Similarity=0.238  Sum_probs=126.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      +.++|+++|++|+|||||++++.++.+. .+.+|.+..+.. +..  ....+.+||+||++++...+..+++++|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            4689999999999999999999998776 455676655542 222  357899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCC-CceEEEEeccccCCCHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKN-RKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~  168 (193)
                      +|++++.+++.+..|+..+.......+.|+++|+||+|+.+...  .++..+ +.    +. .+.+++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~~  156 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN-LA----RQWCNCAFLESSAKSKINVNE  156 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTSCEEEECBTTTTBSHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHH-HH----HHccCCcEEEecCCCCCCHHH
Confidence            99999999999988888877643346899999999999976422  222222 11    11 245899999999999999


Q ss_pred             HHHHHHHHHH
Q 029446          169 GLDWLASTLK  178 (193)
Q Consensus       169 ~~~~l~~~~~  178 (193)
                      ++++|.+.+.
T Consensus       157 l~~~l~~~i~  166 (167)
T 1c1y_A          157 IFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998773

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=2.4e-32  Score=194.78  Aligned_cols=163  Identities=20%  Similarity=0.265  Sum_probs=131.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      .++.+||+++|++|+|||||+++|.++.+. .+.+|.+.++.  .+..+  .+.+.+|||||++++...+..+++++|++
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  102 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL  102 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            356799999999999999999999998876 45677776654  34444  46899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      ++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ..++.. .+    ++..++++++|||++|+|+
T Consensus       103 i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~g~gv  176 (201)
T 2ew1_A          103 ILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAE-EF----SEAQDMYYLETSAKESDNV  176 (201)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHH-HH----HHHHTCCEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHH-HH----HHHcCCEEEEEeCCCCCCH
Confidence            99999999999999988888776532 3578999999999997532  222222 11    1223457999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029446          167 YEGLDWLASTLKEMRA  182 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~~  182 (193)
                      ++++++|.+.+.++..
T Consensus       177 ~~l~~~l~~~i~~~~~  192 (201)
T 2ew1_A          177 EKLFLDLACRLISEAR  192 (201)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.98  E-value=3.9e-32  Score=191.02  Aligned_cols=165  Identities=22%  Similarity=0.319  Sum_probs=132.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ++.++|+++|++|+|||||++++.++.+. .+.+|.+.++.  .+....  ..+.+||+||++.+...+..+++++|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            46799999999999999999999998876 45566665543  344444  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ...+..+.     ++..+++++++||++++|++
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  161 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRF-----AQENELMFLETSALTGENVE  161 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEecCCCCCCHH
Confidence            9999999999999998887775532 2679999999999996532  22222221     12345689999999999999


Q ss_pred             HHHHHHHHHHHhhhccCC
Q 029446          168 EGLDWLASTLKEMRAAGY  185 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~~~~  185 (193)
                      ++++++.+.+.++...+.
T Consensus       162 ~l~~~l~~~~~~~~~~~~  179 (186)
T 2bme_A          162 EAFVQCARKILNKIESGE  179 (186)
T ss_dssp             HHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHhhhcC
Confidence            999999999987765443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.98  E-value=8.3e-32  Score=192.25  Aligned_cols=165  Identities=18%  Similarity=0.216  Sum_probs=132.4

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      ......++|+++|++|+|||||++++.++.+. .+.+|.+..+. .+...  .+.+.+||+||++++...+..+++++|+
T Consensus         9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A            9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            34567799999999999999999999988876 45566665543 34443  3689999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      +++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+..  ..++.....     +..+++++++||++|.|
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g  163 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRAN  163 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCCCC
Confidence            99999999999999999998888775544689999999999997632  222322211     22345899999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 029446          166 LYEGLDWLASTLKEMR  181 (193)
Q Consensus       166 i~~~~~~l~~~~~~~~  181 (193)
                      +++++++|.+.+.++.
T Consensus       164 i~~l~~~l~~~i~~~~  179 (206)
T 2bov_A          164 VDKVFFDLMREIRARK  179 (206)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcc
Confidence            9999999999987654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=4.6e-32  Score=189.66  Aligned_cols=162  Identities=20%  Similarity=0.332  Sum_probs=121.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccccccceeEEEE--EEc--CEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL--STVPTIGFNVEKV--QYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~~~--~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      .+..++|+++|.+|+|||||++++.++.+.  .+.+|.+.++...  ...  .+.+.+||+||++.+...+..+++++|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            357799999999999999999999998875  4567777776532  333  4689999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      +++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+...  .++..+ +    .+..+++++++||+++.|
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~g  160 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEK-L----AKEYGLPFMETSAKTGLN  160 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHH-H----HHHHTCCEEECCTTTCTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHH-H----HHHcCCeEEEEeCCCCCC
Confidence            9999999999999999888888765422 6799999999999986432  222211 1    112345799999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 029446          166 LYEGLDWLASTLKEMR  181 (193)
Q Consensus       166 i~~~~~~l~~~~~~~~  181 (193)
                      +++++++|.+.+.++.
T Consensus       161 i~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          161 VDLAFTAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887544

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.98  E-value=2.1e-32  Score=189.38  Aligned_cols=158  Identities=24%  Similarity=0.331  Sum_probs=127.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      .+.++|+++|++|+|||||++++.++.+.. +.++.+.++.  .+..  ....+.+||+||++++...+..+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            467999999999999999999999888764 4577776653  3333  3678999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|++++.+++.+..|+..+.... .++.|+++|+||+|+.+..  ..++..+ +    ++..+++++++||++|+|++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~g~gi~  157 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQS-Y----ADDNSLLFMETSAKTSMNVN  157 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHH-H----HHHcCCeEEEEeCCCCCCHH
Confidence            9999999999999999888876642 3689999999999987532  2222222 1    12345689999999999999


Q ss_pred             HHHHHHHHHHH
Q 029446          168 EGLDWLASTLK  178 (193)
Q Consensus       168 ~~~~~l~~~~~  178 (193)
                      +++++|.+.+.
T Consensus       158 ~l~~~i~~~~~  168 (170)
T 1r2q_A          158 EIFMAIAKKLP  168 (170)
T ss_dssp             HHHHHHHHTSC
T ss_pred             HHHHHHHHHHh
Confidence            99999988763

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.98  E-value=9.3e-32  Score=190.35  Aligned_cols=162  Identities=20%  Similarity=0.298  Sum_probs=131.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      ..+.+||+++|.+|+|||||+++|.+..+. .+.+|.+.++..  +..  ....+.+||+||++++...+..+++++|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            356799999999999999999999998876 456777766543  333  457899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      ++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..  ..++... +    ++..+++++++||++++|+
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi  175 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARM-F----AENNGLLFLETSALDSTNV  175 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEEECTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHH-H----HHHcCCEEEEEeCCCCCCH
Confidence            9999999999999998888887654 23679999999999997632  2222222 1    1234568999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 029446          167 YEGLDWLASTLKEMR  181 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~  181 (193)
                      ++++++|.+.+.++.
T Consensus       176 ~~l~~~l~~~i~~~~  190 (193)
T 2oil_A          176 ELAFETVLKEIFAKV  190 (193)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.98  E-value=2.3e-32  Score=193.30  Aligned_cols=164  Identities=20%  Similarity=0.297  Sum_probs=128.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeE--EEEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      ....+||+++|++|+|||||+++|.++.+.. +.+|.+.++  ..+...  .+.+.+||+||++++...+..+++++|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   97 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   97 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence            3567999999999999999999999988763 456666444  344444  47899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      ++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ..++... +    ++..+++++++||++++|+
T Consensus        98 i~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi  171 (191)
T 2a5j_A           98 LLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEA-F----AREHGLIFMETSAKTACNV  171 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEEECTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHH-H----HHHcCCEEEEEeCCCCCCH
Confidence            99999999999999998888876532 3589999999999997532  2222221 1    1233458999999999999


Q ss_pred             HHHHHHHHHHHHhhhcc
Q 029446          167 YEGLDWLASTLKEMRAA  183 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~~~  183 (193)
                      ++++++|.+.+.++...
T Consensus       172 ~~l~~~l~~~i~~~~~~  188 (191)
T 2a5j_A          172 EEAFINTAKEIYRKIQQ  188 (191)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999876643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.98  E-value=3.7e-32  Score=192.97  Aligned_cols=165  Identities=16%  Similarity=0.130  Sum_probs=123.4

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccc--eeEEEEEEc--CEEEEEEecCCCCCCHH-hHHhhhcCC
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQYK--NVIFTVWDVGGQEKLRP-LWRHYFNNT   85 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~i~D~~g~~~~~~-~~~~~~~~~   85 (193)
                      ......+||+++|++|||||||+++|.+.... ...++.+  .....+..+  .+.+.+||++|++.+.. .+..+++++
T Consensus        18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~   97 (195)
T 3cbq_A           18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG   97 (195)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence            34567799999999999999999999764332 2223333  223334443  57889999999998765 778888999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      |++++|||++++.+|+.+..|+..+.......+.|+++|+||+|+.+..  ..++..+ +    ++..++++++|||++|
T Consensus        98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----a~~~~~~~~e~Sa~~~  172 (195)
T 3cbq_A           98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-L----AGTLSCKHIETSAALH  172 (195)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-H----HHHTTCEEEEEBTTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-H----HHHhCCEEEEEcCCCC
Confidence            9999999999999999999999888764333579999999999997642  2222221 1    1223458999999999


Q ss_pred             CCHHHHHHHHHHHHHhhh
Q 029446          164 DGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~~~  181 (193)
                      .|++++|++|.+.+.+..
T Consensus       173 ~~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          173 HNTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             BSHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999986544

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.98  E-value=9.8e-32  Score=191.67  Aligned_cols=163  Identities=18%  Similarity=0.318  Sum_probs=130.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      +..+||+++|++|+|||||+++|.+..+. .+.+|.+.++..  +..  ....+.+||+||++++...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            45789999999999999999999998876 456777766543  333  3578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...  .++..+ +    ++..+++++++||++|.|++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~  159 (203)
T 1zbd_A           86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQ-L----ADHLGFEFFEASAKDNINVK  159 (203)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHH-H----HHHHTCEEEECBTTTTBSSH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHH-H----HHHCCCeEEEEECCCCCCHH
Confidence            9999999999999998888876532 35789999999999976422  222211 1    11234589999999999999


Q ss_pred             HHHHHHHHHHHhhhcc
Q 029446          168 EGLDWLASTLKEMRAA  183 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~~  183 (193)
                      +++++|.+.+.++...
T Consensus       160 ~l~~~l~~~i~~~~~~  175 (203)
T 1zbd_A          160 QTFERLVDVICEKMSE  175 (203)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999988765433

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.98  E-value=5.6e-32  Score=189.38  Aligned_cols=163  Identities=21%  Similarity=0.288  Sum_probs=128.3

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      .....+||+++|++|+|||||++++.+..+.. +.+|.+.++.  .+...  ...+.+||+||++++...+..+++++|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            34577999999999999999999999988764 4566665543  34343  5789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      +++|+|++++.+++.+..|+..+.... .++.|+++|+||+|+.+...  .++..+..     +..+++++++||++|+|
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g  161 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATN  161 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCC
Confidence            999999999999999999988887643 35899999999999975422  22322211     22345899999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 029446          166 LYEGLDWLASTLKEMR  181 (193)
Q Consensus       166 i~~~~~~l~~~~~~~~  181 (193)
                      +++++++|.+.+.+..
T Consensus       162 i~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          162 VKEIFYEIARRLPRVQ  177 (181)
T ss_dssp             HHHHHHHHHHTCC---
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999998875543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.98  E-value=7.2e-32  Score=189.56  Aligned_cols=163  Identities=18%  Similarity=0.237  Sum_probs=131.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ....+||+++|++|+|||||++++.+..+. .+.+|.+..+. .+...  .+.+.+||+||++++...+..+++++|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            346799999999999999999999988876 44566665553 23443  368999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.  ...++..+..     +..+++++++||+++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  169 (187)
T 2a9k_A           95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVD  169 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHH
Confidence            99999999999999999888877544458999999999998763  2223332222     2344589999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 029446          168 EGLDWLASTLKEMR  181 (193)
Q Consensus       168 ~~~~~l~~~~~~~~  181 (193)
                      +++++|.+.+.+++
T Consensus       170 ~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          170 KVFFDLMREIRARK  183 (187)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987655

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.98  E-value=2.4e-32  Score=190.73  Aligned_cols=163  Identities=18%  Similarity=0.321  Sum_probs=127.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-cccccccee--EEEEEEcC---EEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFN--VEKVQYKN---VIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~~---~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      ..+.++|+++|++|+|||||++++.++.+. .+.+|.+.+  ...+...+   ..+.+||+||++.+...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            357899999999999999999999998876 445777644  34555544   899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      +++|+|++++.+++.+..|+..+.....  ....|+++|+||+|+.+..  ..++..+ +    ++..+++++++||++|
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~  157 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLR-F----CQENGFSSHFVSAKTG  157 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHH-H----HHHHTCEEEEECTTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHH-H----HHHcCCcEEEEeCCCC
Confidence            9999999999999998888777654210  1234489999999997532  2222221 1    1123458999999999


Q ss_pred             CCHHHHHHHHHHHHHhhh
Q 029446          164 DGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~~~  181 (193)
                      +|+++++++|.+.+.+..
T Consensus       158 ~gi~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          158 DSVFLCFQKVAAEILGIK  175 (178)
T ss_dssp             TTHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHhhh
Confidence            999999999999886554

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.98  E-value=9.6e-32  Score=186.20  Aligned_cols=161  Identities=25%  Similarity=0.394  Sum_probs=123.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ..++|+++|++|+|||||++++.+..+. .+.+|.+.++.  .+...  .+.+.+||+||++++...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            5689999999999999999999998875 44566665543  34433  4789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      |+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.....+..+.+.    +..+++++++||++|.|+++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~  156 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNEIF  156 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHH----HHHTCCEEECBTTTTBSHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHH----HHcCCeEEEEECCCCCCHHHHH
Confidence            999999999999988888876542 25789999999999954322222222221    1234579999999999999999


Q ss_pred             HHHHHHHHhhh
Q 029446          171 DWLASTLKEMR  181 (193)
Q Consensus       171 ~~l~~~~~~~~  181 (193)
                      ++|.+.+.++.
T Consensus       157 ~~l~~~~~~~~  167 (170)
T 1g16_A          157 FTLAKLIQEKI  167 (170)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.98  E-value=6.4e-32  Score=190.66  Aligned_cols=163  Identities=18%  Similarity=0.307  Sum_probs=130.1

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      ..++.+||+++|.+|+|||||+++|.+..+. .+.+|.+.++.  .+..  ....+.+||+||++.+...+..+++++|+
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   97 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG   97 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence            3456799999999999999999999998876 45677776654  3333  35789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      +++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+...  .++..+ +    ++..+++++++||++|.|
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~g~g  171 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRR-L----ADDLGFEFFEASAKENIN  171 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHH-H----HHHcCCeEEEEECCCCCC
Confidence            99999999999999998888887653 235799999999999876322  222211 1    112345899999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 029446          166 LYEGLDWLASTLKEMR  181 (193)
Q Consensus       166 i~~~~~~l~~~~~~~~  181 (193)
                      +++++++|.+.+.++.
T Consensus       172 i~~l~~~l~~~i~~~~  187 (189)
T 2gf9_A          172 VKQVFERLVDVICEKM  187 (189)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999987653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=2.1e-32  Score=194.26  Aligned_cols=168  Identities=17%  Similarity=0.219  Sum_probs=128.4

Q ss_pred             HhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhc
Q 029446            8 LFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFN   83 (193)
Q Consensus         8 ~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~   83 (193)
                      ++.+......+||+++|.+|+|||||++++.++.+. .+.+|.+..+.. +..  ....+.+||+||++. ...+..+++
T Consensus        19 ~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~   97 (196)
T 2atv_A           19 YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMR   97 (196)
T ss_dssp             --------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHH
T ss_pred             chhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhc
Confidence            344455567899999999999999999999998876 456777766532 333  357899999999998 778888999


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446           84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      ++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.  ...++..+ +    ++..+++++++||+
T Consensus        98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~  172 (196)
T 2atv_A           98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK-L----ATELACAFYECSAC  172 (196)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTSEEEECCTT
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHH-H----HHHhCCeEEEECCC
Confidence            99999999999999999999888888766433468999999999999763  22222221 1    11234589999999


Q ss_pred             cCC-CHHHHHHHHHHHHHhhh
Q 029446          162 KGD-GLYEGLDWLASTLKEMR  181 (193)
Q Consensus       162 ~~~-gi~~~~~~l~~~~~~~~  181 (193)
                      +|. |+++++++|.+.+.++.
T Consensus       173 ~g~~gi~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          173 TGEGNITEIFYELCREVRRRR  193 (196)
T ss_dssp             TCTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHHhhc
Confidence            999 99999999999987654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.98  E-value=5.4e-32  Score=187.46  Aligned_cols=159  Identities=15%  Similarity=0.123  Sum_probs=115.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-c--ccccceeEEEEEEc--CEEEEEEecCCCCCCHH-hHHhhhcCCCEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-T--VPTIGFNVEKVQYK--NVIFTVWDVGGQEKLRP-LWRHYFNNTDGLIY   90 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~--~~t~~~~~~~~~~~--~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~   90 (193)
                      .+||+++|++|+|||||++++.+..... .  .++.......+...  .+.+.+||+||++++.. .+..+++++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            4799999999999999999998766542 2  23333333444443  47889999999998876 67777889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      |+|++++++++.+..|+..+.......+.|+++|+||+|+.+..  ..++..+ +    ++..+++++++||++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~~  156 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-L----AGTLSCKHIETSAALHHNTRE  156 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBSHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHH-H----HHHcCCcEEEecCccCCCHHH
Confidence            99999999999999999998875544589999999999987432  2222221 1    123355899999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029446          169 GLDWLASTLKEM  180 (193)
Q Consensus       169 ~~~~l~~~~~~~  180 (193)
                      +|+++.+.+..+
T Consensus       157 l~~~l~~~i~~~  168 (169)
T 3q85_A          157 LFEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999988654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.97  E-value=1.5e-32  Score=197.64  Aligned_cols=163  Identities=16%  Similarity=0.180  Sum_probs=126.2

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE---EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~---~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      .....+||+++|.+|+|||||+++|.++.+. .+.+|.+..+..   +....+.+.+|||+|++++...+..+++++|++
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  102 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV  102 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence            4456799999999999999999999998877 456788776642   223468899999999999999999999999999


Q ss_pred             EEEEECCChhhHHH-HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCcCCCCce
Q 029446           89 IYVVDSLDRERIGK-AKQEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPMEVCEGLGLFDLKNRKW  153 (193)
Q Consensus        89 i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~  153 (193)
                      ++|||++++.+++. +..|+..+....  .+.|+++|+||+|+.+.              ...++... +    ++..++
T Consensus       103 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~  175 (214)
T 3q3j_B          103 LLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA-I----AKQLGA  175 (214)
T ss_dssp             EEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH-H----HHHHTC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH-H----HHHcCC
Confidence            99999999999999 567777765532  58999999999999752              22222111 1    123345


Q ss_pred             -EEEEeccccCCC-HHHHHHHHHHHHHhhhc
Q 029446          154 -HIQGTCALKGDG-LYEGLDWLASTLKEMRA  182 (193)
Q Consensus       154 -~~~~~Sa~~~~g-i~~~~~~l~~~~~~~~~  182 (193)
                       ++++|||++|.| ++++|+++.+.+.+...
T Consensus       176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             SEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             CEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence             899999999998 99999999999876653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.97  E-value=2.8e-32  Score=188.95  Aligned_cols=159  Identities=23%  Similarity=0.316  Sum_probs=121.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ++.++|+++|++|+|||||++++.+..+. .+.+|.+.++..  +..  ..+.+.+||+||++++...+..+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            56799999999999999999999988876 456777766543  333  3468999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..  ..++..+ +    ++..+++++++||++|+|++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~  157 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAES-Y----AESVGAKHYHTSAKQNKGIE  157 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEEEBTTTTBSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHH-H----HHHcCCeEEEecCCCCCCHH
Confidence            999999999999998888776542 12478999999999997632  2222222 1    12234689999999999999


Q ss_pred             HHHHHHHHHHHh
Q 029446          168 EGLDWLASTLKE  179 (193)
Q Consensus       168 ~~~~~l~~~~~~  179 (193)
                      +++++|.+.+.+
T Consensus       158 ~l~~~l~~~~~~  169 (170)
T 1z08_A          158 ELFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.97  E-value=5.5e-32  Score=189.21  Aligned_cols=162  Identities=19%  Similarity=0.321  Sum_probs=129.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      .+..++|+++|++|+|||||++++.+..+. .+.++.+.++.  .+...+  ..+.+||+||++.+...+..+++++|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            357799999999999999999999998876 45566665543  445555  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      ++|+|++++.+++.+..|+..+....  .+.|+++|+||+|+.+...  ..+... +    ....+++++++||++|.|+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi  158 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYK-F----AGQMGIQLFETSAKENVNV  158 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCCEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHH-H----HHHcCCeEEEEECCCCCCH
Confidence            99999999999999998888886642  5799999999999876422  122111 1    1123347999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029446          167 YEGLDWLASTLKEMRA  182 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~~  182 (193)
                      ++++++|.+.+.+...
T Consensus       159 ~~l~~~l~~~~~~~~~  174 (181)
T 3tw8_B          159 EEMFNCITELVLRAKK  174 (181)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999887654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=9.5e-33  Score=195.27  Aligned_cols=162  Identities=19%  Similarity=0.322  Sum_probs=129.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      +..+||+++|.+|+|||||+++|.++.+. .+.+|.+.++.  .+..  ..+.+.+||+||++.+...+..+++++|+++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            46799999999999999999999998865 34466654443  3332  5789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..  ..++. +.+    .+..+++++++||++|.|++
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~gi~  174 (191)
T 3dz8_A          101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKG-QLL----AEQLGFDFFEASAKENISVR  174 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHH-HHH----HHHHTCEEEECBTTTTBSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHH-HHH----HHHcCCeEEEEECCCCCCHH
Confidence            999999999999999988887653 33689999999999986532  22221 111    12234589999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 029446          168 EGLDWLASTLKEMRA  182 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~  182 (193)
                      +++++|.+.+.++..
T Consensus       175 ~l~~~l~~~i~~~~~  189 (191)
T 3dz8_A          175 QAFERLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999877653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=5.8e-32  Score=191.40  Aligned_cols=161  Identities=19%  Similarity=0.247  Sum_probs=130.1

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEE--E--cCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQ--Y--KNVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~--~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      ..++.+||+++|.+|+|||||++++.+..+. .+.++.+.++....  .  ....+.+||+||++++...+..+++++|+
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA   98 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence            3357899999999999999999999998876 56788887765432  2  46789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      +++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++..+..     +..+++++++||+++.|
T Consensus        99 iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g  172 (192)
T 2fg5_A           99 AVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAIN  172 (192)
T ss_dssp             EEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTBS
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcC
Confidence            999999999999999988888876542 357999999999999752  2223332221     23456899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 029446          166 LYEGLDWLASTLKE  179 (193)
Q Consensus       166 i~~~~~~l~~~~~~  179 (193)
                      +++++++|.+.+.+
T Consensus       173 i~~l~~~l~~~i~~  186 (192)
T 2fg5_A          173 IEELFQGISRQIPP  186 (192)
T ss_dssp             HHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.97  E-value=3.7e-32  Score=187.57  Aligned_cols=159  Identities=19%  Similarity=0.258  Sum_probs=126.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeE-EEEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNV-EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      +.++|+++|++|+|||||++++.++.+. .+.+|.+... ..+...  ...+.+||+||++++...+..+++++|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            4689999999999999999999988876 3455655443 233443  46699999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|++++.+++.+..|+..+.......+.|+++|+||+|+.+...  .++.. .+    .+..+++++++||++|.|++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~~l  156 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGR-AL----AEEWGCPFMETSAKSKTMVDEL  156 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHH-HH----HHHHTSCEEEECTTCHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHH-HH----HHHhCCCEEEecCCCCcCHHHH
Confidence            99999999999999988887754446899999999999865322  22211 11    1122447999999999999999


Q ss_pred             HHHHHHHHHh
Q 029446          170 LDWLASTLKE  179 (193)
Q Consensus       170 ~~~l~~~~~~  179 (193)
                      +++|.+.+.+
T Consensus       157 ~~~l~~~~~~  166 (167)
T 1kao_A          157 FAEIVRQMNY  166 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999988753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.97  E-value=7.4e-31  Score=183.02  Aligned_cols=163  Identities=17%  Similarity=0.238  Sum_probs=127.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      ....++|+++|++|+|||||++++.++.+. .+.+|.+.++.  .+...+  +.+.+||+||++++...+..+++++|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            346799999999999999999999988876 45677776654  344443  6899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcCCCCceEEEEeccccCC
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKD---PFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGD  164 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (193)
                      ++|+|++++.+++.+..|+..+...   ....+.|+++|+||+|+.+.. ..++..+...    ...+++++++||++|.
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~  159 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT  159 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence            9999999999999998888777542   123578999999999997432 2233322211    1334579999999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q 029446          165 GLYEGLDWLASTLKEM  180 (193)
Q Consensus       165 gi~~~~~~l~~~~~~~  180 (193)
                      |+++++++|.+.+.++
T Consensus       160 gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          160 NVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             THHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999999988653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.97  E-value=2.1e-32  Score=197.08  Aligned_cols=164  Identities=21%  Similarity=0.364  Sum_probs=130.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc------------CEEEEEEecCCCCCCHHhH
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK------------NVIFTVWDVGGQEKLRPLW   78 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~------------~~~~~i~D~~g~~~~~~~~   78 (193)
                      .++.+||+++|.+|+|||||+++|.+..+. .+.+|.+.++.  .+.+.            ...+.+||+||++++...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            356799999999999999999999998876 34567665543  23332            5789999999999999999


Q ss_pred             HhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEE
Q 029446           79 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQ  156 (193)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~  156 (193)
                      ..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+...  .++..+ +.    +..+++++
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~  176 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE-LA----DKYGIPYF  176 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCCEE
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHH-HH----HHCCCcEE
Confidence            999999999999999999999999988888776544336899999999999976322  222221 11    12345799


Q ss_pred             EeccccCCCHHHHHHHHHHHHHhhhc
Q 029446          157 GTCALKGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       157 ~~Sa~~~~gi~~~~~~l~~~~~~~~~  182 (193)
                      +|||++++|+++++++|.+.+.++..
T Consensus       177 ~~Sa~~g~gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          177 ETSAATGQNVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998876543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.97  E-value=2.8e-31  Score=185.45  Aligned_cols=160  Identities=11%  Similarity=0.126  Sum_probs=122.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ....+||+++|++|+|||||+++|.++.+..+.+|.+..+. .+...  .+.+.+|||||+++     ..+++++|++++
T Consensus         4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            35689999999999999999999999988877778776543 33343  47899999999987     456788999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHc--CCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCcCCCCceEEEEeccccCC
Q 029446           91 VVDSLDRERIGKAKQEFQAIIK--DPFMLNSVILVFANKQDMKG----AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGD  164 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~--~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (193)
                      |||++++.+++.+..|+..+..  .....+.|+++|+||+|+.+    ....++..+...    ...+++++++||++|+
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~  154 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGL  154 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTB
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccC
Confidence            9999999999999886544432  22235799999999999842    122222222110    0124689999999999


Q ss_pred             CHHHHHHHHHHHHHhhhc
Q 029446          165 GLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       165 gi~~~~~~l~~~~~~~~~  182 (193)
                      |++++|++|.+.+.+...
T Consensus       155 ~i~~lf~~l~~~~~~~~~  172 (178)
T 2iwr_A          155 NVDRVFQEVAQKVVTLRK  172 (178)
T ss_dssp             THHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999876653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.97  E-value=9.5e-32  Score=186.20  Aligned_cols=159  Identities=21%  Similarity=0.281  Sum_probs=127.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      .+.++|+++|++|+|||||++++.+..+. .+.++.+.++..  +...  ...+.+||+||++++...+..+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            45799999999999999999999998865 456777766543  3333  478999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      +|+|++++.+++.+..|+..+... ..+..|+++|+||+|+.+.... .+..+.+.    +..+++++++||+++.|+++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~  158 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA----DSIHAIFVETSAKNAININE  158 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH----HHTTCEEEECBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHH----HHcCCEEEEEeCCCCcCHHH
Confidence            999999999999998888877653 3368999999999999764221 22222221    23346899999999999999


Q ss_pred             HHHHHHHHHH
Q 029446          169 GLDWLASTLK  178 (193)
Q Consensus       169 ~~~~l~~~~~  178 (193)
                      ++++|.+.+.
T Consensus       159 l~~~i~~~i~  168 (170)
T 1z0j_A          159 LFIEISRRIP  168 (170)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.97  E-value=3.3e-32  Score=192.09  Aligned_cols=164  Identities=20%  Similarity=0.343  Sum_probs=124.9

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCH-HhHHhhhcCC
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLR-PLWRHYFNNT   85 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~-~~~~~~~~~~   85 (193)
                      ....+.+||+++|.+|+|||||+++|.++.+. .+.+|.+.++.  .+...  ...+.+||+||++++. ..+..+++++
T Consensus        15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (189)
T 1z06_A           15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV   94 (189)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence            34467899999999999999999999988876 35567665543  44444  4789999999999988 7888999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccC-
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKG-  163 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~-  163 (193)
                      |++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.... .+..+.+.    +..+++++++||+++ 
T Consensus        95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~  170 (189)
T 1z06_A           95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA----DTHSMPLFETSAKNPN  170 (189)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH----HHTTCCEEECCSSSGG
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHH----HHcCCEEEEEeCCcCC
Confidence            999999999999999999999888876544568999999999999754221 12222221    223457999999999 


Q ss_pred             --CCHHHHHHHHHHHHHh
Q 029446          164 --DGLYEGLDWLASTLKE  179 (193)
Q Consensus       164 --~gi~~~~~~l~~~~~~  179 (193)
                        +|++++|++|.+.+.+
T Consensus       171 ~~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          171 DNDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             GGSCHHHHHHHHC-----
T ss_pred             cccCHHHHHHHHHHHHhh
Confidence              9999999999887743

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.97  E-value=2.1e-32  Score=189.15  Aligned_cols=158  Identities=20%  Similarity=0.293  Sum_probs=127.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ++.+||+++|++|+|||||++++.++.+. .+.+|.+.++.  .+...  ...+.+||+||++++...+..+++++|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999998876 45677665543  33333  568999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|++++.+++.+..|+..+....  .+.|+++|+||+|+.+..  ..++..+..     +..+++++++||+++.|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  155 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVS  155 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Confidence            9999999999999988888876543  578999999999987632  222222211     2234589999999999999


Q ss_pred             HHHHHHHHHHHh
Q 029446          168 EGLDWLASTLKE  179 (193)
Q Consensus       168 ~~~~~l~~~~~~  179 (193)
                      +++++|.+.+.+
T Consensus       156 ~l~~~l~~~~~~  167 (168)
T 1z2a_A          156 EVFKYLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.97  E-value=4.5e-32  Score=193.02  Aligned_cols=163  Identities=23%  Similarity=0.370  Sum_probs=118.2

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTD   86 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (193)
                      ....+.+||+++|++|+|||||++++.++.+. .+.+|.+.++.  .+...  ...+.+||+||++++...+..+++++|
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  102 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD  102 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence            44567899999999999999999999998875 45566665543  34443  478999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC------C-CCHhHHHhhhCCCcCCCCceEEEEec
Q 029446           87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG------A-MTPMEVCEGLGLFDLKNRKWHIQGTC  159 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (193)
                      ++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+      . ....+..+.+    ++..+++++++|
T Consensus       103 ~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~S  177 (199)
T 2p5s_A          103 GVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL----AMTYGALFCETS  177 (199)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH----HHHHTCEEEECC
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHH----HHHcCCeEEEee
Confidence            999999999999999998888776543 225789999999999862      1 1111111111    123355899999


Q ss_pred             cccCCCHHHHHHHHHHHHHh
Q 029446          160 ALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       160 a~~~~gi~~~~~~l~~~~~~  179 (193)
                      |++|+|+++++++|.+.+.+
T Consensus       178 A~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          178 AKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TTTCTTHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999998854

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.97  E-value=2.2e-30  Score=184.39  Aligned_cols=160  Identities=24%  Similarity=0.337  Sum_probs=128.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEEcC------------------------------
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQYKN------------------------------   60 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~~~------------------------------   60 (193)
                      .++.++|+++|++|+|||||+++|++..+. .+.+|.+.++..  +...+                              
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            457899999999999999999999998876 456777755543  33322                              


Q ss_pred             ---------EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           61 ---------VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        61 ---------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                               ..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+...   .+.|+++|+||+|+.
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcc
Confidence                     88999999999999999999999999999999999999999999888888664   239999999999943


Q ss_pred             CC-CCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          132 GA-MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       132 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      .. ...++..+..     +..+++++++||+++.|+++++++|.+.+.++.
T Consensus       161 ~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          161 KFQVDILEVQKYA-----QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             -CCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            22 2233333222     224568999999999999999999999887654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.97  E-value=1.4e-31  Score=191.39  Aligned_cols=161  Identities=24%  Similarity=0.374  Sum_probs=130.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ++.++|+++|++|+|||||+++|.++.+. .+.+|.+.++.  .+...  .+.+.+||+||++++...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi   85 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   85 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence            46799999999999999999999998876 45577765554  44443  468999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ..++... +.    +..+++++++||++|.|++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~g~gi~  159 (206)
T 2bcg_Y           86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKE-FA----DANKMPFLETSALDSTNVE  159 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHH-HH----HHTTCCEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHH
Confidence            9999999999999999888876542 3579999999999997642  2222221 11    2234579999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 029446          168 EGLDWLASTLKEMR  181 (193)
Q Consensus       168 ~~~~~l~~~~~~~~  181 (193)
                      +++++|.+.+.+..
T Consensus       160 ~l~~~l~~~i~~~~  173 (206)
T 2bcg_Y          160 DAFLTMARQIKESM  173 (206)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.3e-31  Score=189.58  Aligned_cols=163  Identities=17%  Similarity=0.275  Sum_probs=124.3

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      .....++|+++|.+|+|||||+++|.++.+. .+.+|.+.+..  .+...  .+.+.+||+||++++...+..+++++|+
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG  101 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            3456799999999999999999999998876 44567765543  34443  4789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      +++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+...  .++.. .+..   ...+.+++++||++|+|
T Consensus       102 iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~-~~~~---~~~~~~~~~~SA~~g~g  176 (192)
T 2il1_A          102 IILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGE-KFAQ---QITGMRFCEASAKDNFN  176 (192)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHH-HHHH---TSTTCEEEECBTTTTBS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHH-HHHH---hcCCCeEEEEeCCCCCC
Confidence            99999999999999998887766543 335799999999999875322  22222 2211   11256899999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 029446          166 LYEGLDWLASTLKEM  180 (193)
Q Consensus       166 i~~~~~~l~~~~~~~  180 (193)
                      +++++++|.+.+.++
T Consensus       177 i~~l~~~l~~~i~~~  191 (192)
T 2il1_A          177 VDEIFLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.97  E-value=6.5e-32  Score=191.34  Aligned_cols=161  Identities=20%  Similarity=0.300  Sum_probs=125.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ..+.+||+++|.+|+|||||++++.++.+. .+.+|.+..+.. +..  ..+.+.+|||||++++...+..+++++|+++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            346799999999999999999999998876 456777766553 233  3467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCCceE-EEEeccccC
Q 029446           90 YVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWH-IQGTCALKG  163 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~  163 (193)
                      +|+|++++.+++.+. .|+..+...  ..+.|+++|+||+|+.+.    ...++..+ +    ++..+++ ++++||++|
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~Sa~~~  172 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDD-L----CQKLGCVAYIEASSVAK  172 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHH-H----HHHHTCSCEEECBTTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHH-H----HHhcCCCEEEEeecCCC
Confidence            999999999999974 455554432  257999999999999753    22222211 1    1122334 999999999


Q ss_pred             CCHHHHHHHHHHHHHhhh
Q 029446          164 DGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~~~  181 (193)
                      +|+++++++|.+.+.++.
T Consensus       173 ~gi~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          173 IGLNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             BSHHHHHHHHHHHHHCSC
T ss_pred             CCHHHHHHHHHHHHHhcC
Confidence            999999999999987654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.97  E-value=5.6e-32  Score=192.73  Aligned_cols=166  Identities=22%  Similarity=0.316  Sum_probs=125.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeE--EEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ++.+||+++|.+|+|||||+++|.++.+. .+.+|.+.++  ..+...+  ..+.+||+||++.+...+..+++++|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            56799999999999999999999988876 4456666444  3444444  78999999999988888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ...+..+.     ++..++++++|||++|.|++
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~SA~~g~gi~  176 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRF-----AQENELMFLETSALTGENVE  176 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEECTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence            9999999999999999888876532 2679999999999987532  22222221     12345689999999999999


Q ss_pred             HHHHHHHHHHHhhhccCCC
Q 029446          168 EGLDWLASTLKEMRAAGYS  186 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~~~~~  186 (193)
                      +++++|.+.+.++...+..
T Consensus       177 ~l~~~l~~~i~~~~~~~~~  195 (200)
T 2o52_A          177 EAFLKCARTILNKIDSGEL  195 (200)
T ss_dssp             HHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHhcCCC
Confidence            9999999999877765543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.97  E-value=2e-30  Score=178.58  Aligned_cols=160  Identities=17%  Similarity=0.269  Sum_probs=126.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      +.++|+++|++|+|||||++++.+..+. .+.+|.+..+. .+..  ....+.+||+||++++...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            3589999999999999999999988776 34556554432 3333  346789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      +|++++.+++.+..|+..+.......+.|+++|+||+|+.+.....+..+.+.    +..+++++++||+++.|++++++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~  157 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA----RSYGIPYIETSAKTRQGVEDAFY  157 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH----HHHTCCEEEECTTTCTTHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHH
Confidence            99999999999988888876644345799999999999876432222222221    12334799999999999999999


Q ss_pred             HHHHHHHh
Q 029446          172 WLASTLKE  179 (193)
Q Consensus       172 ~l~~~~~~  179 (193)
                      +|.+.+.+
T Consensus       158 ~l~~~~~~  165 (166)
T 2ce2_X          158 TLVREIRQ  165 (166)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=1.5e-30  Score=186.63  Aligned_cols=166  Identities=25%  Similarity=0.364  Sum_probs=128.3

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeE--EEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTD   86 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (193)
                      ......++|+++|++|+|||||+++|.+..+. .+.+|.+.++  ..+...+  +.+.+|||||++.+...+..+++++|
T Consensus        15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (213)
T 3cph_A           15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM   94 (213)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            34456799999999999999999999988875 4556666554  3455544  78999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      ++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.......+..+.+.    +..+++++++||+++.|+
T Consensus        95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi  169 (213)
T 3cph_A           95 GIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNV  169 (213)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHH----HHHTCCEEECBTTTTBSS
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHH----HHcCCEEEEEeCCCCCCH
Confidence            9999999999999999988888876542 25789999999999954322222222111    122347999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029446          167 YEGLDWLASTLKEMRA  182 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~~  182 (193)
                      ++++++|.+.+.++..
T Consensus       170 ~~l~~~l~~~~~~~~~  185 (213)
T 3cph_A          170 NEIFFTLAKLIQEKID  185 (213)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.9e-31  Score=191.22  Aligned_cols=163  Identities=18%  Similarity=0.155  Sum_probs=120.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCc--cccccccceeE--EEEEEc--CEEEEEEecCCCCC-CHHhHHhhhcCCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV--LSTVPTIGFNV--EKVQYK--NVIFTVWDVGGQEK-LRPLWRHYFNNTD   86 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~--~~~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~-~~~~~~~~~~~~d   86 (193)
                      ....+||+++|.+|+|||||+++|.+...  ....++++.+.  ..+..+  .+.+.+|||+|++. ++.....+++.++
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~  113 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD  113 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence            34679999999999999999999996443  33334454443  334443  45788999999887 5566777888999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccccCC
Q 029446           87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGD  164 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (193)
                      ++++|||++++.+|+.+..|+..+.......+.|+|+|+||+|+.+.  ...++. +.+    +...++++++|||++|+
T Consensus       114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~-~~~----a~~~~~~~~e~SAk~g~  188 (211)
T 2g3y_A          114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RAC----AVVFDCKFIETSAAVQH  188 (211)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHH----HHHHTCEEEECBTTTTB
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH-HHH----HHHcCCEEEEEeCCCCC
Confidence            99999999999999999988887765433357999999999999753  222211 111    12234589999999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q 029446          165 GLYEGLDWLASTLKEMR  181 (193)
Q Consensus       165 gi~~~~~~l~~~~~~~~  181 (193)
                      ||+++|++|.+.+..+.
T Consensus       189 ~v~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          189 NVKELFEGIVRQVRLRR  205 (211)
T ss_dssp             SHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999886544

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.97  E-value=5.2e-32  Score=190.98  Aligned_cols=162  Identities=17%  Similarity=0.178  Sum_probs=121.9

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      ....+.+||+++|.+|+|||||+++|.++.+. .+.+|.+..+. .+..  ..+.+.+|||||+++++.. ..+++++|+
T Consensus        16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            34567899999999999999999999998876 45677776653 2333  4578999999999988875 568899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEecc-cc
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCA-LK  162 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~  162 (193)
                      +++|||++++.+++.+..|+..+....  ...+.|+++|+||+|+.+.  ...++..+ +    ++..++++++||| ++
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~Sa~~~  169 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVA-L----AGRFGCLFFEVSACLD  169 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHH-H----HHHHTCEEEECCSSSC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHH-H----HHHcCCcEEEEeecCc
Confidence            999999999999999998888876531  1247899999999999653  22222221 1    1223458999999 89


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 029446          163 GDGLYEGLDWLASTLKE  179 (193)
Q Consensus       163 ~~gi~~~~~~l~~~~~~  179 (193)
                      ++|++++|+.|.+.+.+
T Consensus       170 g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          170 FEHVQHVFHEAVREARR  186 (187)
T ss_dssp             SHHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHHHhh
Confidence            99999999999998753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.97  E-value=7.8e-32  Score=188.13  Aligned_cols=159  Identities=19%  Similarity=0.297  Sum_probs=126.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ...++|+++|++|+|||||++++.++.+. .+.++.+.++.  .+...  ...+.+||+||++++...+..+++++|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            46699999999999999999999988776 44577765543  34443  368999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...  .++.....     +..+++++++||++++|++
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  165 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVK  165 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence            9999999999999998888876532 25799999999999875422  22222111     2234589999999999999


Q ss_pred             HHHHHHHHHHHh
Q 029446          168 EGLDWLASTLKE  179 (193)
Q Consensus       168 ~~~~~l~~~~~~  179 (193)
                      +++++|.+.+.+
T Consensus       166 ~l~~~l~~~~~~  177 (179)
T 2y8e_A          166 QLFRRVAAALPG  177 (179)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHhh
Confidence            999999987644

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.97  E-value=1.9e-30  Score=183.06  Aligned_cols=166  Identities=19%  Similarity=0.278  Sum_probs=118.1

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      .+....++|+++|.+|+|||||+++|.++.+. .+.+|.+..+. .+...  ...+.+||+||++++...+..+++.+|+
T Consensus        16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            34557799999999999999999999988766 34455554443 33443  4679999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      +++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ..++..+ +.    +..+++++++||+++.|+
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi  170 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHE-LA----KSYGIPFIETSAKTRQGV  170 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHH-HH----HHHTCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHH-HH----HHcCCeEEEEeCCCCCCH
Confidence            99999999999999998888877654333579999999999987632 2222222 11    123347999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029446          167 YEGLDWLASTLKEMRA  182 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~~  182 (193)
                      ++++++|.+.+.+.+.
T Consensus       171 ~~l~~~l~~~~~~~~~  186 (190)
T 3con_A          171 EDAFYTLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999876553

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1e-31  Score=186.28  Aligned_cols=160  Identities=18%  Similarity=0.229  Sum_probs=124.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      ..++|+++|++|+|||||++++.++.+. .+.+|.+..+.. +..  ....+.+||+||++++...+..+++++|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            4689999999999999999999998776 455666655543 222  346899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|++++.+++.+..|+..+.... ...+.|+++|+||+|+.+.... .+....+    .+..+++++++||++|.|++++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~l  157 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL----ARTWKCAFMETSAKLNHNVKEL  157 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHH----HHHHTCEEEECBTTTTBSHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHH----HHHhCCeEEEecCCCCcCHHHH
Confidence            99999999998888887765421 2257899999999998754222 1111111    1223458999999999999999


Q ss_pred             HHHHHHHHHh
Q 029446          170 LDWLASTLKE  179 (193)
Q Consensus       170 ~~~l~~~~~~  179 (193)
                      +++|.+.+.+
T Consensus       158 ~~~l~~~~~~  167 (172)
T 2erx_A          158 FQELLNLEKR  167 (172)
T ss_dssp             HHHHHHTCCS
T ss_pred             HHHHHHHHhh
Confidence            9999987644

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.97  E-value=5.5e-31  Score=184.26  Aligned_cols=164  Identities=18%  Similarity=0.222  Sum_probs=116.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc---CEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK---NVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~---~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      ....++|+++|++|+|||||++++.+..+. .+.+|.+.+..  .+...   ...+.+||+||++.+...+..+++++|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            457899999999999999999999998876 44566654443  34333   5789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCC---CHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGAM---TPMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      +++|+|++++.+++.+..|+..+....   ...+.|+++|+||+|+.+..   ..++..+ +..   ...+.+++++||+
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~-~~~---~~~~~~~~~~Sa~  160 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQE-LAK---SLGDIPLFLTSAK  160 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHH-HHH---HTTSCCEEEEBTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHH-HHH---hcCCCeEEEEecC
Confidence            999999999999999988888776532   23678999999999985431   2222222 110   1234579999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhh
Q 029446          162 KGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~~~  181 (193)
                      +|+|+++++++|.+.+.+++
T Consensus       161 ~~~gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          161 NAINVDTAFEEIARSALQQN  180 (182)
T ss_dssp             TTBSHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999987665

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-31  Score=192.93  Aligned_cols=163  Identities=18%  Similarity=0.313  Sum_probs=123.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ...++|+|+|++|+|||||+++|.+..+. .+.+|.+.++.  .+...+  +.+.+|||||++++...+..+++++|+++
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            56799999999999999999999998876 44566665543  444544  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ..++... +    ++..+++++++||++++|++
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~  164 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKT-F----AQENQLLFTETSALNSENVD  164 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHH-H----HHHTTCEEEECCCC-CCCHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHH-H----HHHcCCEEEEEeCCCCCCHH
Confidence            9999999999999998888876542 3578999999999997532  2222222 1    12344689999999999999


Q ss_pred             HHHHHHHHHHHhhhcc
Q 029446          168 EGLDWLASTLKEMRAA  183 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~~  183 (193)
                      +++++|.+.+.++...
T Consensus       165 ~l~~~l~~~i~~~~~~  180 (223)
T 3cpj_B          165 KAFEELINTIYQKVSK  180 (223)
T ss_dssp             HHHHHHHHHHTTCC--
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999998866543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.97  E-value=3.8e-30  Score=184.92  Aligned_cols=163  Identities=23%  Similarity=0.295  Sum_probs=121.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEc---CEEEEEEecCCCCCCHH-hHHhhhcCCCEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYK---NVIFTVWDVGGQEKLRP-LWRHYFNNTDGLI   89 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i   89 (193)
                      ..+.+||+++|++|+|||||+++|+++.+....+++......+...   ...+.+|||||++++.. .+..+++++|+++
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i   83 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV   83 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence            3567999999999999999999999988876556666666666665   68999999999999988 7888899999999


Q ss_pred             EEEECCChh-hHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----------------------
Q 029446           90 YVVDSLDRE-RIGKAKQEFQAIIKD--PFMLNSVILVFANKQDMKGAMTPMEVCEGLG----------------------  144 (193)
Q Consensus        90 ~v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----------------------  144 (193)
                      +|+|+++.. ++.....++..++..  ....+.|+++|+||+|+.+....++..+.+.                      
T Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~  163 (214)
T 2fh5_B           84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST  163 (214)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred             EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence            999999854 466666666665432  1235789999999999987654433322111                      


Q ss_pred             -CCcCC---------C--CceEEEEeccccC------CCHHHHHHHHHHH
Q 029446          145 -LFDLK---------N--RKWHIQGTCALKG------DGLYEGLDWLAST  176 (193)
Q Consensus       145 -~~~~~---------~--~~~~~~~~Sa~~~------~gi~~~~~~l~~~  176 (193)
                       .....         .  ..++|++|||++|      +||+++|++|.+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence             00111         1  1788999999999      9999999999875

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.97  E-value=2.8e-31  Score=191.36  Aligned_cols=164  Identities=21%  Similarity=0.249  Sum_probs=129.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEEc-----CEEEEEEecCCCCCCHHhHHhhhcCCCE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQYK-----NVIFTVWDVGGQEKLRPLWRHYFNNTDG   87 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~-----~~~~~i~D~~g~~~~~~~~~~~~~~~d~   87 (193)
                      ....+||+++|.+|+|||||+|+|+++.+. .+.+|.+.........     .+.+.+|||||++.+...+..++.++|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            356799999999999999999999988776 3467777766554431     2789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      +++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... ..+....+    ++..+++++++||++|.|+
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gv  162 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEV----LKGKNYEYFEISAKTAHNF  162 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHH----TTTCCCEEEEEBTTTTBTT
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHH----HHHcCCcEEEEecCCCCCH
Confidence            999999999999999988888776532 24689999999999976422 22222222    2345678999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029446          167 YEGLDWLASTLKEMRA  182 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~~  182 (193)
                      ++++++|.+.+.+...
T Consensus       163 ~~l~~~l~~~~~~~~~  178 (218)
T 4djt_A          163 GLPFLHLARIFTGRPD  178 (218)
T ss_dssp             THHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHhcccc
Confidence            9999999999976554

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.1e-30  Score=185.48  Aligned_cols=165  Identities=15%  Similarity=0.210  Sum_probs=128.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ....++|+++|.+|+|||||+++|.++.+. .+.+|.+..+.. +..  ....+.+|||||++++...+..+++++|+++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            356799999999999999999999998776 345676655543 222  3568999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      +|+|++++.+++.+..|+..+.... ...+.|+++|+||+|+.+.....+....+    .+..+++++++||++|.|+++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~  160 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAV----AQEWKCAFMETSAKMNYNVKE  160 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHH----HHHHTCEEEECBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHH----HHHhCCeEEEEecCCCCCHHH
Confidence            9999999999999888776655421 12478999999999997643222222211    122345899999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 029446          169 GLDWLASTLKEMRA  182 (193)
Q Consensus       169 ~~~~l~~~~~~~~~  182 (193)
                      ++++|.+.+.++..
T Consensus       161 l~~~l~~~~~~~~~  174 (199)
T 2gf0_A          161 LFQELLTLETRRNM  174 (199)
T ss_dssp             HHHHHHHHCSSSCE
T ss_pred             HHHHHHHHHhhhhc
Confidence            99999998876543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.97  E-value=1.6e-30  Score=185.75  Aligned_cols=165  Identities=16%  Similarity=0.208  Sum_probs=129.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEE--EEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKV--QYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~--~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      ....++|+++|++|+|||||+++|.+..+. .+.+|.+.+....  ...  .+.+.+||+||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            457899999999999999999999998876 4567777665443  333  47899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      ++|+|++++.+++.+..|+..+....   ...+.|+++|+||+|+.+.....+....+..   ...+++++++||++|.|
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~g  161 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY---SKNNIPYFETSAKEAIN  161 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH---HTTSCCEEECBTTTTBS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH---hcCCceEEEEeCCCCCC
Confidence            99999999999999988888776532   1247899999999999854322222222211   13445799999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 029446          166 LYEGLDWLASTLKEMR  181 (193)
Q Consensus       166 i~~~~~~l~~~~~~~~  181 (193)
                      +++++++|.+.+.+..
T Consensus       162 i~~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          162 VEQAFQTIARNALKQE  177 (207)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999887654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.7e-30  Score=182.96  Aligned_cols=159  Identities=19%  Similarity=0.184  Sum_probs=124.5

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      ...+.++|+++|++|+|||||++++.++.+. .+.+|.+..+. .+...  .+.+.+||+||++++...+..+++++|++
T Consensus        14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            3346799999999999999999999998876 45667665553 34443  37899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCcCCCCce
Q 029446           89 IYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAM--------------TPMEVCEGLGLFDLKNRKW  153 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~  153 (193)
                      ++|+|++++.+++.+. .|+..+....  .+.|+++|+||+|+.+..              ..++..+ +    ++..+.
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~  166 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK-L----AKEIGA  166 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH-H----HHHHTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH-H----HHHcCC
Confidence            9999999999999987 5666665432  479999999999997642              1111111 1    111233


Q ss_pred             -EEEEeccccCCCHHHHHHHHHHHHH
Q 029446          154 -HIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       154 -~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                       ++++|||++|+|+++++++|.+.+.
T Consensus       167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          167 CCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence             7999999999999999999998875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.97  E-value=3.2e-30  Score=183.52  Aligned_cols=163  Identities=17%  Similarity=0.166  Sum_probs=120.8

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      .....++|+++|++|+|||||++++.++.+. .+.+|.+..+. .+..++  +.+.+||+||++++...+..+++++|++
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF   95 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence            4467899999999999999999999988866 45677765553 344443  6788999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCcCCCCce
Q 029446           89 IYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAM--------------TPMEVCEGLGLFDLKNRKW  153 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~  153 (193)
                      ++|+|++++.+++.+. .|+..+....  .+.|+++|+||+|+.+..              ..++.. .+    .+..+.
T Consensus        96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~----~~~~~~  168 (201)
T 2q3h_A           96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAK-LL----AEEIKA  168 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH-HH----HHHHTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHH-HH----HHhcCC
Confidence            9999999999999987 5766665432  479999999999987531              111111 11    112233


Q ss_pred             -EEEEeccccCCCHHHHHHHHHHHHHhhhc
Q 029446          154 -HIQGTCALKGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       154 -~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~  182 (193)
                       ++++|||++|+|+++++++|.+.+.+...
T Consensus       169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          169 ASYIECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             cEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence             79999999999999999999999876654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.97  E-value=2.6e-31  Score=190.70  Aligned_cols=162  Identities=17%  Similarity=0.173  Sum_probs=124.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ....+||+++|++|+|||||++++.++.+. .+.+|.+..+. .+..  ..+.+.+||+||++++...+..+++++|+++
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            357799999999999999999999988876 45677765553 2333  3479999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----------CHhHHHhhhCCCcCCCCc-eEEEE
Q 029446           90 YVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAM----------TPMEVCEGLGLFDLKNRK-WHIQG  157 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~  157 (193)
                      +|+|++++.+++.+. .|+..+....  .+.|+++|+||+|+.+..          ..++..+ +    ++..+ .++++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~~  158 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEE-L----RKQIGAAAYIE  158 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHH-H----HHHHTCSEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHH-H----HHHcCCceEEE
Confidence            999999999999987 5666665432  479999999999987642          1111111 1    11223 37999


Q ss_pred             eccccCCCHHHHHHHHHHHHHhhhc
Q 029446          158 TCALKGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       158 ~Sa~~~~gi~~~~~~l~~~~~~~~~  182 (193)
                      +||++|+|++++|++|.+.+.+...
T Consensus       159 ~Sa~~g~gi~~l~~~l~~~~~~~~~  183 (212)
T 2j0v_A          159 CSSKTQQNVKAVFDTAIKVVLQPPR  183 (212)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHCC--
T ss_pred             ccCCCCCCHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999876553

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=8e-31  Score=183.62  Aligned_cols=159  Identities=18%  Similarity=0.178  Sum_probs=112.4

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE---EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      ...+.+||+++|++|+|||||++++.++.+. .+.+|.+..+.   .+....+.+.+||+||++++...+..+++++|++
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   83 (182)
T 3bwd_D            4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (182)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence            3457899999999999999999999988866 34566654432   1233457788999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------------HhHHHhhhCCCcCCCCce-E
Q 029446           89 IYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT------------PMEVCEGLGLFDLKNRKW-H  154 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~  154 (193)
                      ++|+|++++.+++.+. .|+..+....  .+.|+++|+||+|+.+...            .++. ..+    .+..+. +
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~-~~~----~~~~~~~~  156 (182)
T 3bwd_D           84 ILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQG-EEL----KKLIGAPA  156 (182)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHH-HHH----HHHHTCSE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHH-HHH----HHHcCCCE
Confidence            9999999999999987 4666654432  4799999999999876421            1111 111    112233 8


Q ss_pred             EEEeccccCCCHHHHHHHHHHHHH
Q 029446          155 IQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       155 ~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      +++|||++|+|+++++++|.+.+.
T Consensus       157 ~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          157 YIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999998774

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=7.1e-31  Score=189.68  Aligned_cols=164  Identities=22%  Similarity=0.303  Sum_probs=133.0

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTD   86 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (193)
                      ......+||+++|.+|+|||||++++..+.+. .+.+|.+.+......    ..+.+.+|||||++.+...+..+++++|
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   89 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ   89 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence            34567899999999999999999997766655 456777777655433    4678999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      ++++|+|++++.+++.+..|+..+....  .+.|+++|+||+|+.+.....+.     ....+..++++++|||++|.|+
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi  162 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKS-----IVFHRKKNLQYYDISAKSNYNF  162 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGG-----CCHHHHHTCEEEECBGGGTBTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHH-----HHHHHHcCCEEEEEeCCCCCCH
Confidence            9999999999999999999888887643  47899999999999765322211     1112334568999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029446          167 YEGLDWLASTLKEMRA  182 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~~  182 (193)
                      ++++++|.+.+.....
T Consensus       163 ~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          163 EKPFLWLARKLIGDPN  178 (221)
T ss_dssp             THHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhCcc
Confidence            9999999999876553

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.97  E-value=2e-30  Score=182.31  Aligned_cols=159  Identities=16%  Similarity=0.195  Sum_probs=122.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ....+||+++|++|+|||||+++|.++.+. .+.+|.+..+. .+..  ..+.+.+||+||++.+...+..+++++|+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            357899999999999999999999998876 35677765553 2333  3578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCcCCCCc-e
Q 029446           90 YVVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPMEVCEGLGLFDLKNRK-W  153 (193)
Q Consensus        90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~  153 (193)
                      +|+|++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+.              ...++..+ +    ++..+ .
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~~  156 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-M----AKQIGAA  156 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-H----HHHHTCS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH-H----HHHcCCc
Confidence            99999999999998 56666654432  57999999999999742              11121111 1    11122 4


Q ss_pred             EEEEeccc-cCCCHHHHHHHHHHHHHh
Q 029446          154 HIQGTCAL-KGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       154 ~~~~~Sa~-~~~gi~~~~~~l~~~~~~  179 (193)
                      ++++|||+ +++|++++|+.+.+.+.+
T Consensus       157 ~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          157 TYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             EEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            89999999 689999999999998754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.2e-29  Score=181.56  Aligned_cols=165  Identities=19%  Similarity=0.197  Sum_probs=121.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ...+||+++|.+|+|||||+++|.++.+.. +.+|.+..+. .+...  .+.+.+|||||++++...+..+++++|++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence            467899999999999999999999988763 4566665543 33443  4789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------cCCCCce-EEEEec
Q 029446           91 VVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF---------DLKNRKW-HIQGTC  159 (193)
Q Consensus        91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~S  159 (193)
                      |+|++++.+++.+. .|+..+...  ..+.|+++|+||+|+.+.....+....+...         .++..+. +++++|
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          103 CFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999984 555555432  2579999999999997652221111111100         0112233 799999


Q ss_pred             cccCCCHHHHHHHHHHHHHhhh
Q 029446          160 ALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       160 a~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      |++|+|+++++++|.+.+.+..
T Consensus       181 A~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999886543

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=1e-30  Score=185.62  Aligned_cols=163  Identities=20%  Similarity=0.270  Sum_probs=117.8

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE----EEE-EcCEEEEEEecCCCCCCHHhH---Hhhhc
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE----KVQ-YKNVIFTVWDVGGQEKLRPLW---RHYFN   83 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~----~~~-~~~~~~~i~D~~g~~~~~~~~---~~~~~   83 (193)
                      ....+.+||+++|.+|||||||++++.+........+.+....    .+. ...+.+.+||+||+++|....   ..+++
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   94 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR   94 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence            4556889999999999999999998887544432222222222    222 356899999999999988776   88999


Q ss_pred             CCCEEEEEEECCCh--hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHH----HhhhCCCcCCCCce
Q 029446           84 NTDGLIYVVDSLDR--ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEV----CEGLGLFDLKNRKW  153 (193)
Q Consensus        84 ~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~----~~~~~~~~~~~~~~  153 (193)
                      ++|++++|||++++  +++..+..|+......  ..+.|+++|+||+|+.+...    .+++    .+.+.....+..++
T Consensus        95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  172 (196)
T 3llu_A           95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL  172 (196)
T ss_dssp             TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred             cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence            99999999999987  6777777777776432  25899999999999876321    1222    22222222236678


Q ss_pred             EEEEeccccCCCHHHHHHHHHHHH
Q 029446          154 HIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus       154 ~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      ++++|||++ +|++++|+.+.+.+
T Consensus       173 ~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          173 SFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEECTTS-THHHHHHHHHHHHT
T ss_pred             ceEEEEech-hhHHHHHHHHHHHh
Confidence            999999999 99999999998865

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.97  E-value=7.8e-30  Score=183.44  Aligned_cols=165  Identities=18%  Similarity=0.189  Sum_probs=107.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      .+.+||+++|.+|+|||||+++|.++.+. .+.+|.+..+. .+..  ..+.+.+|||||++++...+..+++++|++++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            46799999999999999999999998876 34566655543 2333  34689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcCCCCce-EEEEec
Q 029446           91 VVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---------LFDLKNRKW-HIQGTC  159 (193)
Q Consensus        91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S  159 (193)
                      |+|++++.+++.+. .|+..+....  .+.|+++|+||+|+.+.....+..+...         ...++..+. ++++||
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            99999999999987 5666654432  5789999999999986522111110000         001122344 899999


Q ss_pred             cccCCCHHHHHHHHHHHHHhhh
Q 029446          160 ALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       160 a~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      |++|.|+++++++|.+.+.+..
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999987654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.97  E-value=2.1e-31  Score=190.36  Aligned_cols=162  Identities=17%  Similarity=0.152  Sum_probs=96.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC--Ccc-ccccccceeE--EEEEEc----CEEEEEEecCCCCCCHHhHHhhhcCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG--EVL-STVPTIGFNV--EKVQYK----NVIFTVWDVGGQEKLRPLWRHYFNNT   85 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~--~~~-~~~~t~~~~~--~~~~~~----~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (193)
                      ...++|+++|++|+|||||+++|.+.  .+. .+.+|.+.++  ..+...    ...+.+||+||++.+...+..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            45689999999999999999999988  655 4567776443  345554    57899999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCC-C--CCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKG-A--MTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      |++++|+|++++.+++.+..|+..+.....  ..+.|+++|+||+|+.+ .  ...++..+..     +..+++++++||
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa  172 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA-----TTNTLDFFDVSA  172 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH-----HHTTCEEEECCC
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH-----HHcCCEEEEecc
Confidence            999999999999999999999888876432  25799999999999976 2  2222222211     223468999999


Q ss_pred             cc-CCCHHHHHHHHHHHHHhhh
Q 029446          161 LK-GDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       161 ~~-~~gi~~~~~~l~~~~~~~~  181 (193)
                      ++ +.|+++++++|.+.+.+..
T Consensus       173 ~~~~~gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          173 NPPGKDADAPFLSIATTFYRNY  194 (208)
T ss_dssp             -------CHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHHH
Confidence            99 9999999999999887554

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.97  E-value=1.9e-30  Score=184.87  Aligned_cols=163  Identities=17%  Similarity=0.183  Sum_probs=123.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeE-EEEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNV-EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ...+||+++|.+|+|||||++++.++.+. .+.+|.+..+ ..+...  .+.+.+||+||++++...+..+++++|++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            46789999999999999999999998876 3456666554 234443  4689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcCCCCce-EEEEec
Q 029446           91 VVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---------LFDLKNRKW-HIQGTC  159 (193)
Q Consensus        91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S  159 (193)
                      |+|++++.+++.+. .|+..+...  ..+.|+++|+||+|+.+.....+....+.         ...++..+. +++++|
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999984 555554432  24799999999999986522111111100         000112233 799999


Q ss_pred             cccCCCHHHHHHHHHHHHHh
Q 029446          160 ALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       160 a~~~~gi~~~~~~l~~~~~~  179 (193)
                      |++|+|+++++++|.+.+.+
T Consensus       181 A~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999988753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=2.4e-30  Score=184.87  Aligned_cols=163  Identities=20%  Similarity=0.254  Sum_probs=120.3

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      .....+||+++|.+|+|||||++++.++.+. .+.+|.+..+. .+..  ..+.+.+|||||++++...+..+++++|++
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            3467899999999999999999999988776 44566654433 2233  456778999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------cCCCCc-eEEEE
Q 029446           89 IYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF---------DLKNRK-WHIQG  157 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~  157 (193)
                      ++|+|++++.+++.+. .|+..+....  .+.|+++|+||+|+.+.....+........         .++..+ .++++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  183 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  183 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence            9999999999999997 5665554432  579999999999998653222211111100         011122 36999


Q ss_pred             eccccCCCHHHHHHHHHHHH
Q 029446          158 TCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus       158 ~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      |||++|+|+++++++|.+.+
T Consensus       184 ~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          184 CSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CCTTTCTTHHHHHHHHHHTT
T ss_pred             eeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999998754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.97  E-value=5.4e-30  Score=179.89  Aligned_cols=164  Identities=20%  Similarity=0.221  Sum_probs=123.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      .+.++|+++|++|+|||||++++.++.+. .+.+|.+..+. .+..  ..+.+.+||+||++++...+..+++++|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            46789999999999999999999988776 44566665443 2333  35678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCcCCCCce-EEEEec
Q 029446           91 VVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---------LFDLKNRKW-HIQGTC  159 (193)
Q Consensus        91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S  159 (193)
                      |+|++++.+++.+. .|+..+....  .+.|+++|+||+|+.+.....+......         ...++..+. +++++|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            99999999999987 5666654432  3799999999999876421111111000         000112333 899999


Q ss_pred             cccCCCHHHHHHHHHHHHHhh
Q 029446          160 ALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       160 a~~~~gi~~~~~~l~~~~~~~  180 (193)
                      |++|+|+++++++|.+.+.+.
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCccCHHHHHHHHHHHHhcc
Confidence            999999999999999988543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.97  E-value=9.8e-30  Score=181.82  Aligned_cols=157  Identities=17%  Similarity=0.218  Sum_probs=122.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ....+||+++|++|+|||||+++|.+..+.. +.+|.+..+. .+..  ..+.+.+|||||++.+...+..+++++|+++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            3577999999999999999999999988763 4677766553 2333  3578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHh---HHHhhhCCCcCCCC
Q 029446           90 YVVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPM---EVCEGLGLFDLKNR  151 (193)
Q Consensus        90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~---~~~~~~~~~~~~~~  151 (193)
                      +|||++++.+++.+ ..|+..+....  .+.|+++|+||+|+.+.              ...+   ++.+.++       
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------  175 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------  175 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC-------
Confidence            99999999999998 56666664432  57999999999999742              1111   1222221       


Q ss_pred             ceEEEEeccc-cCCCHHHHHHHHHHHHHh
Q 029446          152 KWHIQGTCAL-KGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       152 ~~~~~~~Sa~-~~~gi~~~~~~l~~~~~~  179 (193)
                      ..++++|||+ +++|++++|+.+.+.+.+
T Consensus       176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          176 AATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            1489999999 689999999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=7.9e-31  Score=184.40  Aligned_cols=166  Identities=17%  Similarity=0.246  Sum_probs=118.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC--Ccc-ccccccceeEEEEEE-------cCEEEEEEecCCCCCCHHhHHhhhcCCC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIG--EVL-STVPTIGFNVEKVQY-------KNVIFTVWDVGGQEKLRPLWRHYFNNTD   86 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~--~~~-~~~~t~~~~~~~~~~-------~~~~~~i~D~~g~~~~~~~~~~~~~~~d   86 (193)
                      .+||+++|++|||||||++++.+.  .+. .+.+|.+.++.....       ..+.+.+|||+|++++...+..++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999985  343 456788877655432       4678999999999999988899999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce----EEEEeccc
Q 029446           87 GLIYVVDSLDR-ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW----HIQGTCAL  161 (193)
Q Consensus        87 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~  161 (193)
                      ++++|+|++++ .+++.+..|+..+....  .+.|+++|+||+|+.+...............++..++    +++++||+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT  159 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence            99999999987 57888988888876532  4789999999999876422111111111111223344    39999999


Q ss_pred             cCC-CHHHHHHHHHHHHHhhhccC
Q 029446          162 KGD-GLYEGLDWLASTLKEMRAAG  184 (193)
Q Consensus       162 ~~~-gi~~~~~~l~~~~~~~~~~~  184 (193)
                      ++. |++++++.|.+.+.+....|
T Consensus       160 ~~~~~~~~l~~~i~~~~~~~~~~~  183 (184)
T 2zej_A          160 EESDALAKLRKTIINESLNFKIRD  183 (184)
T ss_dssp             SCCHHHHHHHHHHHHHHHCC----
T ss_pred             cCchhHHHHHHHHHHHHhccccCC
Confidence            997 99999999999887665443

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=3.8e-30  Score=182.18  Aligned_cols=162  Identities=17%  Similarity=0.131  Sum_probs=117.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC--ccccccccceeE--EEEEEc--CEEEEEEecCCCCC-CHHhHHhhhcCCCE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGE--VLSTVPTIGFNV--EKVQYK--NVIFTVWDVGGQEK-LRPLWRHYFNNTDG   87 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~--~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~g~~~-~~~~~~~~~~~~d~   87 (193)
                      ...+||+++|++|+|||||+++|.+..  +....++++.+.  ..+..+  .+.+.+|||+|+.. ++.....+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            467999999999999999999999633  333333444333  334443  45778999999876 45566778889999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           88 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      +++|||++++.+|+.+..|+..+.......+.|+++|+||+|+....  ..++. +.+    +...++++++|||++|.|
T Consensus        84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~----a~~~~~~~~e~SA~~g~~  158 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAX----AVVFDXKFIETSAAVQHN  158 (192)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHH----HHHTTCEEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHH----HHHhCCceEEeccccCCC
Confidence            99999999999999999888777653333578999999999986531  12211 111    112345899999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 029446          166 LYEGLDWLASTLKEMR  181 (193)
Q Consensus       166 i~~~~~~l~~~~~~~~  181 (193)
                      |+++|+++.+.+....
T Consensus       159 v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          159 VKELFEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999886544

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=4.1e-32  Score=193.23  Aligned_cols=157  Identities=22%  Similarity=0.374  Sum_probs=118.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccee--EEEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFN--VEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ++.+||+++|.+|+|||||+++|.+..+.. +.++.+.+  ...+....  +.+.+||+||++.+...+..+++++|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            467999999999999999999999988763 34555544  44455544  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCcCCCCceEEEEeccccCC
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-----TPMEVCEGLGLFDLKNRKWHIQGTCALKGD  164 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (193)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..     ..+++..        ..+++++++||+++.
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~--------~~~~~~~~vSA~~g~  181 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD--------SLGIPFLETSAKNAT  181 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHH--------TTTCCBCCCCC---H
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHH--------HcCCeEEEEECCCCC
Confidence            999999999999999988887554 33589999999999987542     1222333        334579999999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q 029446          165 GLYEGLDWLASTLKEM  180 (193)
Q Consensus       165 gi~~~~~~l~~~~~~~  180 (193)
                      |+++++++|.+.+.++
T Consensus       182 gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          182 NVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             HHHHHHHHHTTTTTTT
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999887544

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=2.5e-28  Score=170.29  Aligned_cols=164  Identities=21%  Similarity=0.136  Sum_probs=122.1

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--ccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVP--TIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ...+.++|+++|++|+|||||++++.+..+.. +.+  +.......+...+..+.+|||||++++...+..+++.+|+++
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            34678999999999999999999999987763 233  333444567778889999999999999999888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--cCCCCc--eEEEEeccccCCC
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF--DLKNRK--WHIQGTCALKGDG  165 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~Sa~~~~g  165 (193)
                      +|+|++++...+.. ..+..+..    .+.|+++|+||+|+.+. ..+++...+...  ..+..+  ++++++||++|+|
T Consensus        84 ~v~d~~~~~~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (178)
T 2lkc_A           84 LVVAADDGVMPQTV-EAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG  157 (178)
T ss_dssp             EEEETTCCCCHHHH-HHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred             EEEECCCCCcHHHH-HHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence            99999874322221 22333322    47899999999999874 333443333211  122333  7899999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 029446          166 LYEGLDWLASTLKEMRA  182 (193)
Q Consensus       166 i~~~~~~l~~~~~~~~~  182 (193)
                      +++++++|.+.+...+.
T Consensus       158 v~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          158 LDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhhhhhcc
Confidence            99999999998876553

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.96  E-value=4.6e-29  Score=187.43  Aligned_cols=159  Identities=19%  Similarity=0.171  Sum_probs=118.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc----cccccceeEEEEEEcCEEEEEEecCCCCCCHH---hHHhhhcCCCEEEEE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLS----TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP---LWRHYFNNTDGLIYV   91 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~~i~v   91 (193)
                      ||+++|+.|+|||||++++.++.++.    +.+|.+++...+. ..+++++|||+||++|+.   .+..++++++++++|
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV   79 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV   79 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence            68999999999999999988765542    4688888877663 458999999999999975   468899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcCC----CCceEEEEeccc
Q 029446           92 VDSLDRERIGKAKQEFQAIIKD--PFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLK----NRKWHIQGTCAL  161 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~Sa~  161 (193)
                      ||++++  +.+...||.+++..  ...++.|+++++||+|+.++..    .+++..+.+...++    ..+++|++|||+
T Consensus        80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk  157 (331)
T 3r7w_B           80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF  157 (331)
T ss_dssp             CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred             EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence            999987  33333444333221  1125799999999999987532    13344433323333    368899999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhh
Q 029446          162 KGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~~~  181 (193)
                      + .+|.++|..+.+.+.++.
T Consensus       158 d-~nV~eAFs~iv~~li~~~  176 (331)
T 3r7w_B          158 D-HSIYEAFSRIVQKLIPEL  176 (331)
T ss_dssp             S-SHHHHHHHHHHTTSSTTH
T ss_pred             C-CcHHHHHHHHHHHHHhhH
Confidence            7 689999999988776543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=6.4e-28  Score=175.04  Aligned_cols=161  Identities=16%  Similarity=0.151  Sum_probs=114.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-c--ccccceeEEEEEEcCEEEEEEecCCC------CCC---HHhHHhhh
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-T--VPTIGFNVEKVQYKNVIFTVWDVGGQ------EKL---RPLWRHYF   82 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~i~D~~g~------~~~---~~~~~~~~   82 (193)
                      ...++|+++|.+|+|||||+|+|++..+.. .  ..|.......+......+.+|||||+      +..   ...+..++
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  106 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA  106 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence            578999999999999999999999987752 1  23445555566667899999999998      432   12234456


Q ss_pred             cCCCEEEEEEECCChhhHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhhCCCcCCCCc--eE
Q 029446           83 NNTDGLIYVVDSLDRERIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME----VCEGLGLFDLKNRK--WH  154 (193)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~--~~  154 (193)
                      ..+|++++|+|++++.+++  ....|+..+...  ..+.|+++|+||+|+.+......    ..+.+    .+..+  ++
T Consensus       107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~  180 (228)
T 2qu8_A          107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQI----LDNVKNPIK  180 (228)
T ss_dssp             TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHH----HHHCCSCEE
T ss_pred             ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHH----HHhcCCCce
Confidence            8899999999999987764  233555555432  24789999999999976433211    11111    12223  68


Q ss_pred             EEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          155 IQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       155 ~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      +++|||++|+|+++++++|.+.+.+.+
T Consensus       181 ~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          181 FSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=8e-31  Score=187.16  Aligned_cols=163  Identities=21%  Similarity=0.270  Sum_probs=123.7

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE---EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      ...+.+||+++|.+|+|||||++++.++.+. .+.+|.+..+.   .+....+.+.+|||||++++...+..+++++|++
T Consensus        26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (204)
T 3th5_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF  105 (204)
Confidence            3467899999999999999999999988775 34455544332   2233467788999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh---------HHHhhhCCCcCCCCce-EEEE
Q 029446           89 IYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM---------EVCEGLGLFDLKNRKW-HIQG  157 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~  157 (193)
                      ++|+|++++.+++.+. .|+..+... . .+.|+++|+||+|+.+.....         .+........++..+. ++++
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~~l~~~-~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  183 (204)
T 3th5_A          106 LICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  183 (204)
Confidence            9999999999999987 555554332 1 378999999999997642111         1222222223344555 8999


Q ss_pred             eccccCCCHHHHHHHHHHHH
Q 029446          158 TCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus       158 ~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      |||++|+|+++++++|.+.+
T Consensus       184 vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          184 CSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            99999999999999998765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=3.2e-28  Score=172.28  Aligned_cols=158  Identities=15%  Similarity=0.126  Sum_probs=110.2

Q ss_pred             hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcCEEEEEEecCC----------CCCCHHh
Q 029446           11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKNVIFTVWDVGG----------QEKLRPL   77 (193)
Q Consensus        11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~i~D~~g----------~~~~~~~   77 (193)
                      ..+....++|+++|.+|+|||||+|++.+..+. .+.++.+.+..  .... +..+.+|||||          ++.+...
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHH
Confidence            345567899999999999999999999988743 34444443322  2222 33699999999          6667777


Q ss_pred             HHhhhcCC---CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhhCCCcCCC
Q 029446           78 WRHYFNNT---DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME----VCEGLGLFDLKN  150 (193)
Q Consensus        78 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~  150 (193)
                      +..+++.+   |++++|+|++++.++.... .+ ..+..   .+.|+++|+||+|+.+.....+    +.+.+.    ..
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~-~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~  166 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MY-EFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN----ID  166 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HH-HHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT----CC
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HH-HHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHc----cc
Confidence            77887777   9999999999877766542 12 22222   4789999999999987643322    222232    23


Q ss_pred             CceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          151 RKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       151 ~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      .+.+++++||++++|+++++++|.+.+.
T Consensus       167 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          167 PEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            4668999999999999999999998763

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=3.9e-27  Score=162.75  Aligned_cols=147  Identities=21%  Similarity=0.260  Sum_probs=109.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccc--cceeEEEEEEcCEEEEEEecCCCCCCH------HhHHhhhc--C
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPT--IGFNVEKVQYKNVIFTVWDVGGQEKLR------PLWRHYFN--N   84 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t--~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--~   84 (193)
                      ..++|+++|++|+|||||++++.+..+. ...++  .......+...+..+.+|||||+.++.      .....++.  +
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   81 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK   81 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence            3589999999999999999999987654 23333  334445566678899999999998774      34456664  8


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      +|++++|+|+++.+.   ...|+..+..    .+.|+++|+||+|+...    .+.+++.+.++        ++++++||
T Consensus        82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA  146 (165)
T 2wji_A           82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA  146 (165)
T ss_dssp             CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred             CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEc
Confidence            999999999987543   3446655543    36899999999998542    12334444443        47999999


Q ss_pred             ccCCCHHHHHHHHHHHH
Q 029446          161 LKGDGLYEGLDWLASTL  177 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~  177 (193)
                      ++|+|++++|++|.+.+
T Consensus       147 ~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          147 AKKMGIEELKKAISIAV  163 (165)
T ss_dssp             GGTBSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998875

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.95  E-value=4.8e-28  Score=171.13  Aligned_cols=162  Identities=20%  Similarity=0.199  Sum_probs=113.8

Q ss_pred             hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEE-EEEcCEEEEEEecCC----------CCCCHHhHH
Q 029446           11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEK-VQYKNVIFTVWDVGG----------QEKLRPLWR   79 (193)
Q Consensus        11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~g----------~~~~~~~~~   79 (193)
                      ..+....++|+++|.+|+|||||+|++.+.....+.++.+.+... .......+.+|||||          ++.+...+.
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence            345567899999999999999999999998866555555544332 222345688999999          556777777


Q ss_pred             hhhcCC---CEEEEEEECCChhhHHH--HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceE
Q 029446           80 HYFNNT---DGLIYVVDSLDRERIGK--AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWH  154 (193)
Q Consensus        80 ~~~~~~---d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  154 (193)
                      .+++.+   |++++|+|+++..+...  +..|+..       .+.|+++|+||+|+.+........+...........++
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT  169 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence            777766   99999999987543332  2233322       26899999999999865443332222211101113457


Q ss_pred             EEEeccccCCCHHHHHHHHHHHHHh
Q 029446          155 IQGTCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       155 ~~~~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                      ++++||++|+|+++++++|.+.+.+
T Consensus       170 ~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          170 IIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             eEEEecCCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999999998754

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.95  E-value=2.5e-27  Score=164.86  Aligned_cols=151  Identities=19%  Similarity=0.218  Sum_probs=111.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc--c-c-ccccceeEEEEEEcCEEEEEEecCCCCCCHHh--------HHhhhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--S-T-VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFN   83 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~-~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   83 (193)
                      ..++|+++|.+|+|||||+|++.+....  . + ..|.+.....+..++..+.+|||||+.++...        ...+++
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE   82 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence            4589999999999999999999987643  1 2 22334444566777888999999998764211        124578


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      ++|++++|+|++++.+++. ..|+..+... ...+.|+++|+||+|+.+...          ...+..+.++++|||++|
T Consensus        83 ~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~g  150 (172)
T 2gj8_A           83 QADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSARTG  150 (172)
T ss_dssp             TCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTTC
T ss_pred             hCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCCC
Confidence            9999999999998887663 4566655443 225799999999999864311          111224568999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 029446          164 DGLYEGLDWLASTLK  178 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~  178 (193)
                      +|+++++++|.+.+.
T Consensus       151 ~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          151 EGVDVLRNHLKQSMG  165 (172)
T ss_dssp             TTHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHhh
Confidence            999999999988764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=8.1e-28  Score=181.64  Aligned_cols=162  Identities=17%  Similarity=0.197  Sum_probs=121.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC--cc--ccccccceeEEEEEE-cCEEEEEEecCCCCCC-----HHhHHhhhcCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGE--VL--STVPTIGFNVEKVQY-KNVIFTVWDVGGQEKL-----RPLWRHYFNNT   85 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~--~~--~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~-----~~~~~~~~~~~   85 (193)
                      ..+||+++|++|+|||||++++.++.  +.  .+.+|.+..+..+.. +...+.+||+||++.+     ...+..+++++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a   81 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV   81 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence            46899999999999999999998873  32  356888988888775 6799999999999988     67788888999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHhH---HHhhhCCCcCCCC---ceEEEEe
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAMTPME---VCEGLGLFDLKNR---KWHIQGT  158 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~  158 (193)
                      |++++|+|++++.+++.+..|...+... ...++.|+++|+||+|+.+.....+   +........++..   .+++++|
T Consensus        82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t  161 (307)
T 3r7w_A           82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT  161 (307)
T ss_dssp             SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence            9999999999999999886654333221 0125799999999999987322210   1111111112233   3689999


Q ss_pred             ccccCCCHHHHHHHHHHHHH
Q 029446          159 CALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       159 Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      ||++ .|+.+++..+.+.+.
T Consensus       162 Sa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          162 SIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             CTTS-SHHHHHHHHHHHTTC
T ss_pred             eecC-ChHHHHHHHHHHHHc
Confidence            9999 889999988877553

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.95  E-value=3.6e-27  Score=161.76  Aligned_cols=147  Identities=17%  Similarity=0.185  Sum_probs=106.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccc--c--ccccceeEEEEEEcCEEEEEEecCCCCC-------CHHhHHhhhcCCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLS--T--VPTIGFNVEKVQYKNVIFTVWDVGGQEK-------LRPLWRHYFNNTD   86 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~--~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d   86 (193)
                      +||+++|++|+|||||++++.+..+..  .  ..+.......+...+..+.+|||||+..       +...+..+++.+|
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE   81 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence            589999999999999999999887542  1  2233344556667788999999999887       3555677889999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce-EEEEeccccCCC
Q 029446           87 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDG  165 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  165 (193)
                      ++++|+|++++.+...  .++..++..   .+.|+++|+||+|+.+..  ++. ..+    . ..+. +++++||++|.|
T Consensus        82 ~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~-~~~----~-~~~~~~~~~~Sa~~~~g  148 (161)
T 2dyk_A           82 VVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE--LYL-GPL----Y-GLGFGDPIPTSSEHARG  148 (161)
T ss_dssp             EEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG--GGC-GGG----G-GGSSCSCEECBTTTTBS
T ss_pred             EEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch--HhH-HHH----H-hCCCCCeEEEecccCCC
Confidence            9999999987544322  334444332   468999999999987651  111 111    1 2233 689999999999


Q ss_pred             HHHHHHHHHHHH
Q 029446          166 LYEGLDWLASTL  177 (193)
Q Consensus       166 i~~~~~~l~~~~  177 (193)
                      +++++++|.+.+
T Consensus       149 v~~l~~~l~~~l  160 (161)
T 2dyk_A          149 LEELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhC
Confidence            999999998865

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=2.3e-28  Score=172.13  Aligned_cols=162  Identities=17%  Similarity=0.190  Sum_probs=111.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEEcCEEEEEEecCC-----------CCCCHHhHHhhhcC-
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQYKNVIFTVWDVGG-----------QEKLRPLWRHYFNN-   84 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~~~-   84 (193)
                      +||+++|++|+|||||++++.+..+. .+.++.......+...  .+.+|||||           ++.+...+..++++ 
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN   79 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence            68999999999999999999998876 3345544444444444  789999999           56667777777766 


Q ss_pred             CCEEEEEEECCChhhHHHHH-HHHHH--------HHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCce
Q 029446           85 TDGLIYVVDSLDRERIGKAK-QEFQA--------IIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKW  153 (193)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~-~~~~~--------~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~  153 (193)
                      ++++++|+++.+..+++++. .|...        +.......+.|+++|+||+|+.+..  ..+++.+.++.. ......
T Consensus        80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~  158 (190)
T 2cxx_A           80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LSEIDK  158 (190)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GGGHHH
T ss_pred             hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhh-hhccCC
Confidence            66666666666666776653 33221        1111112578999999999998753  233445555431 112234


Q ss_pred             EEEEeccccCCCHHHHHHHHHHHHHhhhc
Q 029446          154 HIQGTCALKGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       154 ~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~  182 (193)
                      ++++|||++|+|+++++++|.+.+.+...
T Consensus       159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          159 VFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             HEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             cEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            68999999999999999999999876553

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.95  E-value=8.9e-27  Score=177.50  Aligned_cols=163  Identities=19%  Similarity=0.218  Sum_probs=122.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ...++|+++|.+|+|||||++++.++.+. .+.+|++..+. .+..+  .+.+.+||+||++.+...+..+++++|++++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            46799999999999999999999988776 45566655443 23333  4567799999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CcCCCCce-EEEEec
Q 029446           91 VVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL---------FDLKNRKW-HIQGTC  159 (193)
Q Consensus        91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~S  159 (193)
                      |+|++++.+++.+. .|+..+....  .+.|+++|+||+|+.+.....+.......         ..++..+. ++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  310 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  310 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence            99999999999987 4555554422  38999999999998654211111111000         00112233 899999


Q ss_pred             cccCCCHHHHHHHHHHHHHh
Q 029446          160 ALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       160 a~~~~gi~~~~~~l~~~~~~  179 (193)
                      |++|+|++++++.|.+.+..
T Consensus       311 a~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          311 ALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCcCHHHHHHHHHHHHhc
Confidence            99999999999999988754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.94  E-value=5e-27  Score=166.93  Aligned_cols=161  Identities=20%  Similarity=0.337  Sum_probs=124.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeE--EEEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      +..++|+++|++|||||||++++.+..+. .+.+|.+...  ..+...+  +.+.+||++|++.++..+..+++++++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            35689999999999999999999998876 4456766544  3455544  67889999999999888888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|+|+++..+++.+..|+..+... ...+.|+++|+||+|+.+..  ...+ .+.+    +...++.++++||+++.|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~-a~~l----~~~~~~~~~d~Sal~~~~i~  156 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDE-ARAF----AEKNNLSFIETSALDSTNVE  156 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHH-HHHH----HHHTTCEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHH-HHHH----HHHcCCeEEEEeCCCCCCHH
Confidence            999999999998888887766432 22578999999999987532  2222 2222    12334589999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 029446          168 EGLDWLASTLKEMR  181 (193)
Q Consensus       168 ~~~~~l~~~~~~~~  181 (193)
                      +++++|.+.+.+..
T Consensus       157 ~l~~~l~~~~~~~~  170 (199)
T 2f9l_A          157 EAFKNILTEIYRIV  170 (199)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887654

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.94  E-value=6.7e-28  Score=177.69  Aligned_cols=162  Identities=11%  Similarity=0.109  Sum_probs=114.2

Q ss_pred             cCCCccEEEEEcCC---------CCCHHHHHHHHhcC---Ccc-cccccc-ceeEE------------------EEEEcC
Q 029446           13 FGNSEMRVVMLGLD---------AAGKTTILYKLHIG---EVL-STVPTI-GFNVE------------------KVQYKN   60 (193)
Q Consensus        13 ~~~~~~~v~v~G~~---------~~GKssli~~l~~~---~~~-~~~~t~-~~~~~------------------~~~~~~   60 (193)
                      .....+||+++|.+         |||||||+++|.++   .+. .+.+|+ +.++.                  .++...
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            34677999999999         99999999999984   443 334443 22211                  123456


Q ss_pred             EEEEEEe-----------------------cCCCCCCHHhHHhhhc---------------------CCCEEEEEEECCC
Q 029446           61 VIFTVWD-----------------------VGGQEKLRPLWRHYFN---------------------NTDGLIYVVDSLD   96 (193)
Q Consensus        61 ~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~   96 (193)
                      +.+.+||                       ++|++++...+..++.                     ++|++++|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8899999                       6677777777777776                     7999999999999


Q ss_pred             h--hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446           97 R--ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  174 (193)
Q Consensus        97 ~--~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  174 (193)
                      +  .+++.+..|+..+.......+.|+++|+||+|+.+....++.. .+..   ...++++++|||++|.|++++|++|.
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~-~~~~---~~~~~~~~e~SAk~g~gv~elf~~l~  250 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAH-TFAL---SKKNLQVVETSARSNVNVDLAFSTLV  250 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHH-HHHH---TSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHH-HHHH---hcCCCeEEEEECCCCCCHHHHHHHHH
Confidence            8  9999999988887653222578999999999986542222111 1111   11356899999999999999999999


Q ss_pred             HHHH
Q 029446          175 STLK  178 (193)
Q Consensus       175 ~~~~  178 (193)
                      +.+.
T Consensus       251 ~~l~  254 (255)
T 3c5h_A          251 QLID  254 (255)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=5.3e-26  Score=159.92  Aligned_cols=152  Identities=20%  Similarity=0.259  Sum_probs=115.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccc--eeEEEEEEcCEEEEEEecCCCCCCH------HhHHhhhc--
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQYKNVIFTVWDVGGQEKLR------PLWRHYFN--   83 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--   83 (193)
                      .+.++|+++|++|+|||||+++|.+..+. ...++..  .....+...+..+.+|||||+..+.      ..+..++.  
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   84 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE   84 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence            46789999999999999999999987654 3334333  4445667778999999999998874      44556664  


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCCceEEEEec
Q 029446           84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTC  159 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (193)
                      .++++++|+|+++   ++....|+..+..    .+.|+++|+||+|+...    ...+++.+.++        ++++++|
T Consensus        85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~S  149 (188)
T 2wjg_A           85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLS  149 (188)
T ss_dssp             CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECB
T ss_pred             CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEEE
Confidence            5999999999875   5556666666654    47899999999998642    23344444443        3799999


Q ss_pred             cccCCCHHHHHHHHHHHHHhhh
Q 029446          160 ALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       160 a~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      |++++|++++++++.+.+.+..
T Consensus       150 a~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          150 AAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             GGGTBSHHHHHHHHHHHHTTC-
T ss_pred             ecCCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999886654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=1.1e-25  Score=165.87  Aligned_cols=149  Identities=21%  Similarity=0.275  Sum_probs=113.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-cccc--ccceeEEEEEEcCEEEEEEecCCCCCCHH------hHHhhh--c
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVP--TIGFNVEKVQYKNVIFTVWDVGGQEKLRP------LWRHYF--N   83 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~   83 (193)
                      .+.++|+++|++|+|||||+|+|++..+. .+.|  |.......+...+..+.+|||||+..+..      ....++  .
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~   82 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG   82 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence            45789999999999999999999987764 2233  33344455666789999999999887754      334555  5


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCCceEEEEec
Q 029446           84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTC  159 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (193)
                      ++|++++|+|+++.++..   .++..+..    .+.|+++|+||+|+...    .+..++.+.++        ++++++|
T Consensus        83 ~~d~ii~V~D~t~~~~~~---~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S  147 (258)
T 3a1s_A           83 DADLVILVADSVNPEQSL---YLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS  147 (258)
T ss_dssp             CCSEEEEEEETTSCHHHH---HHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred             CCCEEEEEeCCCchhhHH---HHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence            899999999999866543   35555543    37899999999998642    22345555554        4799999


Q ss_pred             cccCCCHHHHHHHHHHHHH
Q 029446          160 ALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       160 a~~~~gi~~~~~~l~~~~~  178 (193)
                      |++|.|++++++++.+.+.
T Consensus       148 A~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          148 SVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             eeCCcCHHHHHHHHHHHhh
Confidence            9999999999999998765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.94  E-value=5.1e-27  Score=185.07  Aligned_cols=164  Identities=21%  Similarity=0.299  Sum_probs=111.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcccccccccee----EEEEEEcCEEEEEEecCCCC--------CCHHhHHhhhcC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFN----VEKVQYKNVIFTVWDVGGQE--------KLRPLWRHYFNN   84 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~   84 (193)
                      .++|+++|.+|+|||||+|+|++.......++.|.+    +..+.+.+..+.+|||||+.        .+...+..++++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            368999999999999999999987765444444443    44455567889999999986        566677888899


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce-EEEEeccccC
Q 029446           85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKG  163 (193)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (193)
                      +|++++|+|+.++.+...  .++..++..   .++|+++|+||+|+.+...  +..      .+...+. +++++||++|
T Consensus        83 ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~~~------~~~~lg~~~~~~iSA~~g  149 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIY------DFYSLGFGEPYPISGTHG  149 (436)
T ss_dssp             CSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-------CCC------SSGGGSSCCCEECBTTTT
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchh--hHH------HHHHcCCCCeEEEeCcCC
Confidence            999999999987665443  455555543   5789999999999875421  000      0111222 5899999999


Q ss_pred             CCHHHHHHHHHHHHHhhh------------ccCCCCCCcCCC
Q 029446          164 DGLYEGLDWLASTLKEMR------------AAGYSSVGTSSF  193 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~~~------------~~~~~~~~~~~~  193 (193)
                      .|++++++++.+.+.+..            --|.+++|||||
T Consensus       150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSL  191 (436)
T 2hjg_A          150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSL  191 (436)
T ss_dssp             BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHH
T ss_pred             CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHH
Confidence            999999999999886422            128899999874

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.94  E-value=4.1e-26  Score=180.06  Aligned_cols=165  Identities=19%  Similarity=0.191  Sum_probs=113.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCC---------CHHhHHhhhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEK---------LRPLWRHYFNN   84 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~   84 (193)
                      .+|+++|.+|+|||||+|+|++......    +.|.+..+..+.+.+..+.+|||||...         ++..+..++++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~   81 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   81 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence            4799999999999999999998875322    2333445667778889999999999764         24556778899


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCce-EEEEeccccC
Q 029446           85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKG  163 (193)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (193)
                      +|++++|+|++++.+...  .++..++..   .++|+++|+||+|+.... ..+...++.     ..++ +++++||++|
T Consensus        82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~-----~lg~~~~~~iSA~~g  150 (439)
T 1mky_A           82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELY-----SLGFGEPIPVSAEHN  150 (439)
T ss_dssp             CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG-----GGSSCSCEECBTTTT
T ss_pred             CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH-----hcCCCCEEEEeccCC
Confidence            999999999987544332  233333332   368999999999975320 111101111     1222 4799999999


Q ss_pred             CCHHHHHHHHHHHHHhhh----------------ccCCCCCCcCCC
Q 029446          164 DGLYEGLDWLASTLKEMR----------------AAGYSSVGTSSF  193 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~~~----------------~~~~~~~~~~~~  193 (193)
                      .|++++++++.+.+.+..                --|.+++|||||
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTL  196 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTL  196 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHH
T ss_pred             CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHH
Confidence            999999999999887432                117788888864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.93  E-value=4.5e-26  Score=161.05  Aligned_cols=158  Identities=19%  Similarity=0.348  Sum_probs=122.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcC--EEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      +..++|+++|++|||||||++++.+..+. .+.+|.+.++.  .+..++  +.+.+||++|++++...+..+++++++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            45689999999999999999999998876 45677776543  455544  56678999999999988888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      +|+|.++..+++++..|+..+... ...+.|+++++||+|+.+... ..+..+.+.    ...++.++++||+++.|+++
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~----~~~~~~~ld~Sald~~~v~~  181 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA----EKNGLSFIETSALDSTNVEA  181 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence            999999999998887777665432 225789999999999875321 112222221    23345899999999999999


Q ss_pred             HHHHHHHHH
Q 029446          169 GLDWLASTL  177 (193)
Q Consensus       169 ~~~~l~~~~  177 (193)
                      +++.|.+.+
T Consensus       182 l~~~l~~~i  190 (191)
T 1oix_A          182 AFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=1.5e-25  Score=169.29  Aligned_cols=161  Identities=19%  Similarity=0.140  Sum_probs=120.1

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccc----cccceeEEEEEEc-CEEEEEEecCCCCCCH----------Hh
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV----PTIGFNVEKVQYK-NVIFTVWDVGGQEKLR----------PL   77 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~----~t~~~~~~~~~~~-~~~~~i~D~~g~~~~~----------~~   77 (193)
                      ++...-.|+++|.+|||||||+|+|++..+....    .|........... ..++.+|||||+....          ..
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~   85 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI   85 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence            4456779999999999999999999998875332    2333334455666 8999999999986544          56


Q ss_pred             HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCcCCCCceEEE
Q 029446           78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-GAMTPMEVCEGLGLFDLKNRKWHIQ  156 (193)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~  156 (193)
                      ...+++.+|++++|+|+++..+......|+..+..    .+.|+++|+||+|+. +.....+..+.+...  .....+++
T Consensus        86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~--~~~~~~i~  159 (308)
T 3iev_A           86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK--HPELTEIV  159 (308)
T ss_dssp             HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH--CTTCCCEE
T ss_pred             HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHh--ccCCCeEE
Confidence            67788999999999999998888777665666543    468999999999997 433333322222110  01224799


Q ss_pred             EeccccCCCHHHHHHHHHHHHHh
Q 029446          157 GTCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       157 ~~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                      ++||++|.|++++++.|.+.+.+
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSCB
T ss_pred             EEeCCCCCCHHHHHHHHHHhCcc
Confidence            99999999999999999998854

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=8.1e-26  Score=166.43  Aligned_cols=144  Identities=19%  Similarity=0.173  Sum_probs=109.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-cccc--ccceeEEEEEEcCEEEEEEecCCCCCCHH----------hHHhhh--
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVP--TIGFNVEKVQYKNVIFTVWDVGGQEKLRP----------LWRHYF--   82 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~--   82 (193)
                      .+|+++|++|+|||||+|+|++.... ...|  |.......+...+..+.+|||||...+..          ....++  
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~   81 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID   81 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence            48999999999999999999988654 2333  33344556777888999999999877653          456666  


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcCCCCceEEEEe
Q 029446           83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVCEGLGLFDLKNRKWHIQGT  158 (193)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  158 (193)
                      +++|++++|+|+++.++...+..+   +..    .+.|+++|+||+|+.+..    ...++.+.++        ++++++
T Consensus        82 ~~~d~vi~VvDas~~~~~~~l~~~---l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~  146 (256)
T 3iby_A           82 LEYDCIINVIDACHLERHLYLTSQ---LFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI  146 (256)
T ss_dssp             SCCSEEEEEEEGGGHHHHHHHHHH---HTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred             CCCCEEEEEeeCCCchhHHHHHHH---HHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence            889999999999986655444333   222    378999999999986532    2344555554        479999


Q ss_pred             ccccCCCHHHHHHHHHHH
Q 029446          159 CALKGDGLYEGLDWLAST  176 (193)
Q Consensus       159 Sa~~~~gi~~~~~~l~~~  176 (193)
                      ||++|.|+++++++|.+.
T Consensus       147 SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          147 QAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             BGGGTBSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            999999999999999876

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=2.3e-26  Score=166.06  Aligned_cols=166  Identities=17%  Similarity=0.121  Sum_probs=111.2

Q ss_pred             hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc-ccc----ccccceeEEEEE-EcCEEEEEEecCCCC----------CC
Q 029446           11 VFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV-LST----VPTIGFNVEKVQ-YKNVIFTVWDVGGQE----------KL   74 (193)
Q Consensus        11 ~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~-~~~----~~t~~~~~~~~~-~~~~~~~i~D~~g~~----------~~   74 (193)
                      ..+....++|+++|.+|+|||||+|+|++... ...    ..|....+..+. .....+.+|||||..          .+
T Consensus        23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~  102 (223)
T 4dhe_A           23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW  102 (223)
T ss_dssp             GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence            34556789999999999999999999999873 222    223333344443 346889999999943          33


Q ss_pred             HHhHHhhhcC---CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHH----HhhhCCC-
Q 029446           75 RPLWRHYFNN---TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV----CEGLGLF-  146 (193)
Q Consensus        75 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~~~~-  146 (193)
                      ......+++.   +|++++|+|+++..+.. ...++..+ ..   .+.|+++|+||+|+.+.....+.    .+.+... 
T Consensus       103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l-~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~  177 (223)
T 4dhe_A          103 EQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWF-AP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR  177 (223)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHH-GG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHH-Hh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence            5555566665   77899999998754322 22333333 32   46899999999999875332211    1222100 


Q ss_pred             -cCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          147 -DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       147 -~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                       .......+++++||++|.|+++++++|.+.+....
T Consensus       178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence             00135668999999999999999999999886554

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=2.7e-25  Score=164.82  Aligned_cols=147  Identities=21%  Similarity=0.226  Sum_probs=108.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-cccc--ccceeEEEEEEcCEEEEEEecCCCCCCH------HhHHhhhc--C
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVP--TIGFNVEKVQYKNVIFTVWDVGGQEKLR------PLWRHYFN--N   84 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--~   84 (193)
                      ..++|+++|++|+|||||+|+|++.... ...|  |.......+.. +..+.+|||||+..+.      .....++.  +
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~   80 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR   80 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence            4689999999999999999999987532 3333  33333333433 6789999999998875      45566665  6


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      +|++++|+|+++.++.   ..|...+..    .+.|+++|+||+|+...    ....++.+.++        ++++++||
T Consensus        81 ~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA  145 (272)
T 3b1v_A           81 ADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSA  145 (272)
T ss_dssp             CSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBT
T ss_pred             CCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEc
Confidence            9999999999876544   344445443    47899999999998542    23344555554        47999999


Q ss_pred             ccCCCHHHHHHHHHHHHH
Q 029446          161 LKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~  178 (193)
                      ++|+|++++++++.+.+.
T Consensus       146 ~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          146 LKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             TTTBSHHHHHHHHHHSCT
T ss_pred             cCCCCHHHHHHHHHHHHh
Confidence            999999999999988653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=1.8e-25  Score=166.26  Aligned_cols=149  Identities=19%  Similarity=0.180  Sum_probs=111.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-cccc--ccceeEEEEEEcCEEEEEEecCCCCCCH----------HhHHhhh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVP--TIGFNVEKVQYKNVIFTVWDVGGQEKLR----------PLWRHYF   82 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~~~   82 (193)
                      +.++|+++|++|+|||||+|+|++..+. ...+  |.......+...+..+.+|||||+..+.          .....++
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~   81 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence            4689999999999999999999998754 2233  3344445566677899999999988765          2233333


Q ss_pred             --cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCcCCCCceEEE
Q 029446           83 --NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVCEGLGLFDLKNRKWHIQ  156 (193)
Q Consensus        83 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~  156 (193)
                        +++|++++|+|+++.++...+..++.+.       +.|+++|+||+|+.+..    ..+++.+.++        ++++
T Consensus        82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i  146 (274)
T 3i8s_A           82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVI  146 (274)
T ss_dssp             HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEE
T ss_pred             hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEE
Confidence              6899999999999866555544444432       68999999999986532    2344545444        4799


Q ss_pred             EeccccCCCHHHHHHHHHHHHHh
Q 029446          157 GTCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       157 ~~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                      ++||++|.|+++++++|.+.+..
T Consensus       147 ~~SA~~g~gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          147 PLVSTRGRGIEALKLAIDRYKAN  169 (274)
T ss_dssp             ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred             EEEcCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999887653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.93  E-value=1.3e-25  Score=177.06  Aligned_cols=161  Identities=14%  Similarity=0.065  Sum_probs=115.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc--cc--ccccceeEEEEEEcCEEEEEEecCCC----------CCCHHhHH-h
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--ST--VPTIGFNVEKVQYKNVIFTVWDVGGQ----------EKLRPLWR-H   80 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~-~   80 (193)
                      ..++|+++|.+|+|||||+|++++....  ..  +.|.+.....+..++..+.+|||||+          +.|...+. .
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~  253 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK  253 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence            5689999999999999999999988764  22  22333334456677888999999997          44444433 4


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEe
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGT  158 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  158 (193)
                      +++.+|++++|+|++++.+++.. .|+..+..    .+.|+|+|+||+|+.+...  .++..+.+........+.+++++
T Consensus       254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  328 (436)
T 2hjg_A          254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM  328 (436)
T ss_dssp             HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence            77899999999999998887775 45555443    5799999999999987543  22333222211112235689999


Q ss_pred             ccccCCCHHHHHHHHHHHHHhhh
Q 029446          159 CALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       159 Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      ||++|.|++++++.+.+.+....
T Consensus       329 SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          329 SALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             CTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             ecccCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999998876543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=4.4e-25  Score=165.98  Aligned_cols=156  Identities=18%  Similarity=0.073  Sum_probs=113.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc---c-cccceeEEEEEEcCEEEEEEecCCCCC--------CHHhHHhhh
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST---V-PTIGFNVEKVQYKNVIFTVWDVGGQEK--------LRPLWRHYF   82 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---~-~t~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~   82 (193)
                      .+..+|+++|.+|+|||||+|+|++..+...   . .|.......+.....++.+|||||...        +......++
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL   84 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence            3556899999999999999999999877532   1 222222334556789999999999876        455667788


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccc
Q 029446           83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      +++|++++|+|++++.+..  ..|+...+.... .+.|+|+|+||+|+.+... ..+..+.+      ....+++++||+
T Consensus        85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~  155 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSAL  155 (301)
T ss_dssp             SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTT
T ss_pred             hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCC
Confidence            9999999999998765433  345544444321 4789999999999986533 22223332      112379999999


Q ss_pred             cCCCHHHHHHHHHHHHHh
Q 029446          162 KGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~  179 (193)
                      +|.|++++++.|.+.+.+
T Consensus       156 ~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          156 DERQVAELKADLLALMPE  173 (301)
T ss_dssp             CHHHHHHHHHHHHTTCCB
T ss_pred             CCCCHHHHHHHHHHhccc
Confidence            999999999999887643

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=4.1e-26  Score=184.12  Aligned_cols=158  Identities=23%  Similarity=0.288  Sum_probs=111.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEE------------EcCEEEEEEecCCCCCCHHhHHh
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQ------------YKNVIFTVWDVGGQEKLRPLWRH   80 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~------------~~~~~~~i~D~~g~~~~~~~~~~   80 (193)
                      ....+||+++|.+|||||||+++++++.+. .+.+|.+.++....            .....+.+||+||++.+...+..
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            457799999999999999999999998876 45688887776442            12689999999999999999999


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEe
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGT  158 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  158 (193)
                      +++++|++++|+|+++.+.   ...|+..+....  .+.|+|+|+||+|+.+...  .++..+..     ...+.+++++
T Consensus       118 ~l~~~d~ii~V~D~s~~~~---~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~v  187 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTDSN---KHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERF-----PAIENRFHRI  187 (535)
T ss_dssp             HHHSSEEEEEEECGGGGGG---HHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHC-----GGGTTCEEEC
T ss_pred             HccCCcEEEEEEeCCCchh---HHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHH-----HhcCCceEEE
Confidence            9999999999999987644   445555554432  4689999999999976433  22333222     2334579999


Q ss_pred             ccccCCCHHHHHHHHHHHHHhhh
Q 029446          159 CALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       159 Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      ||++|.|++++++.|.+.+.+..
T Consensus       188 SA~~g~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          188 SCKNGDGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             CC-----CTTHHHHHHHHHTCTT
T ss_pred             ecCcccCHHHHHHHHHHHHhccc
Confidence            99999999999999999886543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=2.4e-24  Score=160.08  Aligned_cols=152  Identities=22%  Similarity=0.199  Sum_probs=115.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccc--eeEEEEEEcCEEEEEEecCCCCCCHH------hHHhhh--cC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIG--FNVEKVQYKNVIFTVWDVGGQEKLRP------LWRHYF--NN   84 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~   84 (193)
                      +.++|+++|++|||||||+|+|++..+. ...++.+  .....+.+.+..+.+|||||+..+..      ....++  .+
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   81 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN   81 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence            4689999999999999999999988764 2334333  44455667888999999999887765      555666  68


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      +|++++|+|+++..   ....++..+...   ...|+++|+||+|+.+.    .....+.+.++        ++++++||
T Consensus        82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~Sa  147 (271)
T 3k53_A           82 ADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTNA  147 (271)
T ss_dssp             CSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECBG
T ss_pred             CcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEEe
Confidence            99999999998753   334455555443   23899999999997542    23455555554        37999999


Q ss_pred             ccCCCHHHHHHHHHHHHHhhh
Q 029446          161 LKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      ++|.|++++++.+.+.+....
T Consensus       148 ~~g~gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          148 KKGEGVEELKRMIALMAEGKV  168 (271)
T ss_dssp             GGTBTHHHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHHHhccc
Confidence            999999999999999876543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=7e-26  Score=179.54  Aligned_cols=169  Identities=21%  Similarity=0.262  Sum_probs=113.0

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccee----EEEEEEcCEEEEEEecCC--------CCCCHHhHHh
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFN----VEKVQYKNVIFTVWDVGG--------QEKLRPLWRH   80 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~   80 (193)
                      .....++|+++|.+|+|||||+|+|.+..+.....+.|.+    +..+.+.+..+.+|||||        +++++.....
T Consensus        19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~   98 (456)
T 4dcu_A           19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI   98 (456)
T ss_dssp             ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred             hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence            3345689999999999999999999998765443444444    344445678999999999        6667778888


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      +++++|++++|+|+.+.  +.....++..++..   .++|+++|+||+|+.+...  ...+.+.    ...+ .++++||
T Consensus        99 ~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~~e~~~----lg~~-~~~~iSA  166 (456)
T 4dcu_A           99 AMDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIYDFYS----LGFG-EPYPISG  166 (456)
T ss_dssp             HHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGG----GSSS-SEEECCT
T ss_pred             hHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hHHHHHH----cCCC-ceEEeec
Confidence            89999999999998654  33444566666654   5799999999999875321  1111111    1111 3579999


Q ss_pred             ccCCCHHHHHHHHHHHHHhhhc------------cCCCCCCcCCC
Q 029446          161 LKGDGLYEGLDWLASTLKEMRA------------AGYSSVGTSSF  193 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~~~------------~~~~~~~~~~~  193 (193)
                      ++|.|+.++++.+.+.+.....            -|.+++|||||
T Consensus       167 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSsl  211 (456)
T 4dcu_A          167 THGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSL  211 (456)
T ss_dssp             TTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHH
T ss_pred             ccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHH
Confidence            9999999999999988753321            27788888864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=2.4e-26  Score=165.47  Aligned_cols=121  Identities=24%  Similarity=0.299  Sum_probs=96.8

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----cccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcC---
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS----TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNN---   84 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---   84 (193)
                      ....+.++|+++|++|+|||||+++|.+..+..    +.++.+..+     ....+.+||+||++.++..+..+++.   
T Consensus         7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   81 (218)
T 1nrj_B            7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAK   81 (218)
T ss_dssp             ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred             CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence            345678999999999999999999999987653    233333222     56789999999999999888888887   


Q ss_pred             -CCEEEEEEECC-ChhhHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCCHh
Q 029446           85 -TDGLIYVVDSL-DRERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGAMTPM  137 (193)
Q Consensus        85 -~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~  137 (193)
                       +|++++|+|++ ++.++.....|+..+....   ...+.|+++|+||+|+.+.....
T Consensus        82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~  139 (218)
T 1nrj_B           82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS  139 (218)
T ss_dssp             GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred             cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence             89999999999 8889999999888887532   22579999999999998875543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.91  E-value=1.6e-24  Score=165.11  Aligned_cols=158  Identities=21%  Similarity=0.193  Sum_probs=119.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcC-EEEEEEecCCC----CCCHHhHHhhh---cCCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKN-VIFTVWDVGGQ----EKLRPLWRHYF---NNTD   86 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~D~~g~----~~~~~~~~~~~---~~~d   86 (193)
                      .+|+++|.+|||||||+|++++....  .+ .+|...+...+.... .++.+||+||.    ..+..+...++   +.++
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            47899999999999999999987643  33 356667777777764 89999999994    33444444444   4599


Q ss_pred             EEEEEEECCC---hhhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccc
Q 029446           87 GLIYVVDSLD---RERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        87 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      ++++|+|+++   +.+++.+..|+.++.... ...++|+++|+||+|+....+ .+++.+.+..      ..+++++||+
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~  312 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAV  312 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSC
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECC
Confidence            9999999998   788888888888776542 235799999999999876421 2233333321      1479999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhh
Q 029446          162 KGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~~~  181 (193)
                      +++|+++++++|.+.+.+..
T Consensus       313 tg~gi~eL~~~l~~~l~~~~  332 (342)
T 1lnz_A          313 TREGLRELLFEVANQLENTP  332 (342)
T ss_dssp             CSSTTHHHHHHHHHHHTSCC
T ss_pred             CCcCHHHHHHHHHHHHhhCc
Confidence            99999999999999986544

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=1.3e-23  Score=161.68  Aligned_cols=159  Identities=19%  Similarity=0.175  Sum_probs=119.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc---cccccceeEEEEEEcCEEEEEEecCCCCCCH---------HhHHhhh
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS---TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLR---------PLWRHYF   82 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~   82 (193)
                      ...++|+++|.+|+|||||+|++.+.....   ...|.+.....+......+.+|||||.....         .......
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  244 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR  244 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence            467899999999999999999999887531   2345566666666678899999999975431         1223444


Q ss_pred             cCCCEEEEEEECCChh--hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           83 NNTDGLIYVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        83 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      ..+|++++|+|++++.  +++....|+..+....  .+.|+|+|+||+|+......++.....     +..+++++++||
T Consensus       245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA  317 (357)
T 2e87_A          245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA  317 (357)
T ss_dssp             GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred             hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence            5799999999998877  6788778887776532  278999999999987653222222211     123457999999


Q ss_pred             ccCCCHHHHHHHHHHHHHhh
Q 029446          161 LKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~  180 (193)
                      ++|+|+++++++|.+.+...
T Consensus       318 ~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          318 LKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHH
Confidence            99999999999999988654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=4.5e-24  Score=169.14  Aligned_cols=149  Identities=22%  Similarity=0.234  Sum_probs=97.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc--cc--ccccceeEEEEEEcCEEEEEEecCCCCCCHHhH--------Hhhhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--ST--VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW--------RHYFN   83 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~~   83 (193)
                      ..++|+++|.+|+|||||+|+|.+....  ..  ..|.......+..++..+.+|||||+.++...+        ..+++
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~  311 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA  311 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence            4689999999999999999999987633  22  233444456677789999999999987765432        44678


Q ss_pred             CCCEEEEEEECCChhhHHH---HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH--HHhhhCCCcCCCCceEEEEe
Q 029446           84 NTDGLIYVVDSLDRERIGK---AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME--VCEGLGLFDLKNRKWHIQGT  158 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  158 (193)
                      ++|++++|+|++++.+++.   ...++..+      .+.|+|+|+||+|+.+......  +.+. .       ..+++++
T Consensus       312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~-------~~~~i~v  377 (476)
T 3gee_A          312 EADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALIRAIADG-T-------GTEVIGI  377 (476)
T ss_dssp             SCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHHHHHHHH-H-------TSCEEEC
T ss_pred             cCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhHHHHHhc-C-------CCceEEE
Confidence            9999999999998877653   22333332      2789999999999987643321  2221 0       1369999


Q ss_pred             ccccCCCHHHHHHHHHHHHH
Q 029446          159 CALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       159 Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      ||++|+|+++++++|.+.+.
T Consensus       378 SAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          378 SALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             BTTTTBSHHHHHHHHTHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHh
Confidence            99999999999999999886

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.91  E-value=3.3e-24  Score=167.49  Aligned_cols=162  Identities=16%  Similarity=0.053  Sum_probs=115.0

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccce----------e---------EEEEEEcCEEEEEEecC
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGF----------N---------VEKVQYKNVIFTVWDVG   69 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~----------~---------~~~~~~~~~~~~i~D~~   69 (193)
                      .....++|+++|++++|||||+++|++......    ..+.+.          .         ..........+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            346789999999999999999999998543211    011000          0         00001122789999999


Q ss_pred             CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhhCC
Q 029446           70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME----VCEGLGL  145 (193)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~  145 (193)
                      |+++|......++..+|++++|+|+++..++.....++..+...   ...|+|+|+||+|+.+.....+    +.+.+..
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999876555555555544332   2358999999999987532222    2222221


Q ss_pred             CcCCCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446          146 FDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                        ....+++++++||++|+|+++++++|.+.+..
T Consensus       161 --~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          161 --TWAENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             --STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             --hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence              12235689999999999999999999987754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.91  E-value=4.9e-24  Score=169.07  Aligned_cols=150  Identities=23%  Similarity=0.300  Sum_probs=114.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc---cc-ccccceeEEEEEEcCEEEEEEecCCCC-CCH--------HhHHhhhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL---ST-VPTIGFNVEKVQYKNVIFTVWDVGGQE-KLR--------PLWRHYFN   83 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~---~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~-~~~--------~~~~~~~~   83 (193)
                      .++|+++|.+|+|||||+|+|++....   .+ ..|.......+..++..+.+|||||.. ++.        .....+++
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~  322 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE  322 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence            489999999999999999999987642   22 345555566777889999999999987 543        23456778


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      .+|++++|+|++++.+++.. ..+.. +     .++|+|+|+||+|+.+....+++.+...      .+.+++++||++|
T Consensus       323 ~aD~vl~VvD~s~~~s~~~~-~il~~-l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAktg  389 (482)
T 1xzp_A          323 KADIVLFVLDASSPLDEEDR-KILER-I-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALKG  389 (482)
T ss_dssp             HCSEEEEEEETTSCCCHHHH-HHHHH-H-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGGT
T ss_pred             cccEEEEEecCCCCCCHHHH-HHHHH-h-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCCC
Confidence            99999999999988777653 23332 2     3689999999999976544444443322      2246999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 029446          164 DGLYEGLDWLASTLKE  179 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~  179 (193)
                      +|+++++++|.+.+..
T Consensus       390 ~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          390 EGLEKLEESIYRETQE  405 (482)
T ss_dssp             CCHHHHHHHHHHHTHH
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999998764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.91  E-value=3.1e-24  Score=170.09  Aligned_cols=162  Identities=15%  Similarity=0.121  Sum_probs=113.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccc--cccceeEEEEEEcCEEEEEEecCC----------CCCCHHhHH-
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--STV--PTIGFNVEKVQYKNVIFTVWDVGG----------QEKLRPLWR-   79 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~-   79 (193)
                      ...++|+++|.+|+|||||+|++.+....  ...  .|.......+...+..+.+|||||          ++.+...+. 
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  272 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL  272 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence            45689999999999999999999977633  222  233333456667788999999999          677766654 


Q ss_pred             hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEE
Q 029446           80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQG  157 (193)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~  157 (193)
                      .+++.+|++++|+|+++..+  +...++...+..   .++|+|+|+||+|+.+...  .++..+...........+++++
T Consensus       273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (456)
T 4dcu_A          273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  347 (456)
T ss_dssp             HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            47789999999999987543  333333333333   5799999999999986532  2232222211111122458999


Q ss_pred             eccccCCCHHHHHHHHHHHHHhhh
Q 029446          158 TCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       158 ~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      +||++|+|++++++.+.+.+....
T Consensus       348 ~SA~~g~gv~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          348 MSALTKKRIHTLMPAIIKASENHS  371 (456)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EcCCCCcCHHHHHHHHHHHHHHhc
Confidence            999999999999999998876554

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=1.9e-24  Score=168.78  Aligned_cols=157  Identities=18%  Similarity=0.123  Sum_probs=111.7

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----cccccceeEEEEEEcCE-EEEEEecCCCCCCHHh-------HH
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS----TVPTIGFNVEKVQYKNV-IFTVWDVGGQEKLRPL-------WR   79 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~----~~~t~~~~~~~~~~~~~-~~~i~D~~g~~~~~~~-------~~   79 (193)
                      .+....++|+++|+.|+|||||+|+|++..+..    ...|.......+..... .+.+|||||+..+...       ..
T Consensus        29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             ---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence            445678999999999999999999999887642    23445555666666554 8999999998876543       45


Q ss_pred             hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEec
Q 029446           80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC  159 (193)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (193)
                      .++.++|++++|+|++....   ...|+..+..    .+.|+|+|+||+|+...... +..+.+.    +..+++++++|
T Consensus       109 ~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vS  176 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPTPY---EDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVS  176 (423)
T ss_dssp             HHHTSCSEEEEECSSSCCHH---HHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCS
T ss_pred             HHHhcCCEEEEEEeCCChHH---HHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEE
Confidence            67889999999999943332   2344444433    37899999999999876544 3333332    34566899999


Q ss_pred             cccCCCHHHHHHHHHHHHHhh
Q 029446          160 ALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       160 a~~~~gi~~~~~~l~~~~~~~  180 (193)
                      |++|+|+++++++|.+.+.+.
T Consensus       177 Aktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          177 ALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             SCCTTSTTTHHHHHHHHSCCC
T ss_pred             CCCCCCHHHHHHHHHHhhhhh
Confidence            999999999999999998544

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.91  E-value=1.4e-23  Score=160.51  Aligned_cols=135  Identities=23%  Similarity=0.382  Sum_probs=108.7

Q ss_pred             cccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCC
Q 029446           47 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPFM  116 (193)
Q Consensus        47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~  116 (193)
                      +|+|+....+..+.+.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+...|+..+......
T Consensus       179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~  258 (353)
T 1cip_A          179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  258 (353)
T ss_dssp             CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence            46677777788889999999999999999999999999999999999998          57899999999999876556


Q ss_pred             CCCeEEEEEeCCCCCC-----------------CCCHhHHHhhh-----CCCcC-CCCceEEEEeccccCCCHHHHHHHH
Q 029446          117 LNSVILVFANKQDMKG-----------------AMTPMEVCEGL-----GLFDL-KNRKWHIQGTCALKGDGLYEGLDWL  173 (193)
Q Consensus       117 ~~~p~ivv~nK~Dl~~-----------------~~~~~~~~~~~-----~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l  173 (193)
                      .+.|+|+++||+|+..                 ....++..+..     .+... ...++.+++|||+++.||+++|+++
T Consensus       259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v  338 (353)
T 1cip_A          259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV  338 (353)
T ss_dssp             TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence            7899999999999852                 12233332211     11111 2467889999999999999999999


Q ss_pred             HHHHHhhh
Q 029446          174 ASTLKEMR  181 (193)
Q Consensus       174 ~~~~~~~~  181 (193)
                      .+.+.+..
T Consensus       339 ~~~i~~~~  346 (353)
T 1cip_A          339 TDVIIKNN  346 (353)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99887654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.91  E-value=2.6e-23  Score=156.94  Aligned_cols=135  Identities=26%  Similarity=0.405  Sum_probs=109.9

Q ss_pred             cccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCC
Q 029446           47 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAIIKDPFM  116 (193)
Q Consensus        47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~  116 (193)
                      +|+|+....+..+.+.+++||++||++++..|..++++++++|+|+|++          +..++.+...|+..+......
T Consensus       153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~  232 (327)
T 3ohm_A          153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF  232 (327)
T ss_dssp             CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence            5667778888889999999999999999999999999999999999664          678899999999999887666


Q ss_pred             CCCeEEEEEeCCCCCCC------------------CCHhHHHhh-----hCCCcCCCCceEEEEeccccCCCHHHHHHHH
Q 029446          117 LNSVILVFANKQDMKGA------------------MTPMEVCEG-----LGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  173 (193)
Q Consensus       117 ~~~p~ivv~nK~Dl~~~------------------~~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  173 (193)
                      .+.|+|+++||+|+..+                  .+.++..+.     ......+..++.+++|||+++.||+.+|+.+
T Consensus       233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v  312 (327)
T 3ohm_A          233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV  312 (327)
T ss_dssp             TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence            78999999999998641                  122222211     1222234567889999999999999999999


Q ss_pred             HHHHHhhh
Q 029446          174 ASTLKEMR  181 (193)
Q Consensus       174 ~~~~~~~~  181 (193)
                      .+.+.+..
T Consensus       313 ~~~Il~~~  320 (327)
T 3ohm_A          313 KDTILQLN  320 (327)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99987654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.89  E-value=4.7e-23  Score=162.74  Aligned_cols=151  Identities=15%  Similarity=0.181  Sum_probs=102.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--ccceeEEEEEEcCEEEEEEecCCCCCCHHh--------HHhhhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--STVP--TIGFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFN   83 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   83 (193)
                      ..++|+++|.+|+|||||+|+|.+....  ...+  |.......+..++..+.+|||||..++...        ...+++
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~  302 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN  302 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence            4589999999999999999999986543  2222  333334566778899999999997654432        233578


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      .+|++++|+|++++.+... ..++..+      ...|+|+|+||+|+.+.....    ..  ..+ ....+++++||++|
T Consensus       303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~~--~~~-~~~~~~i~iSAktg  368 (462)
T 3geh_A          303 TADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----SL--EYP-ENITQIVHTAAAQK  368 (462)
T ss_dssp             SCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----TC--CCC-TTCCCEEEEBTTTT
T ss_pred             cCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----HH--HHh-ccCCcEEEEECCCC
Confidence            8999999999998766544 3444443      236999999999997652221    11  001 13457999999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q 029446          164 DGLYEGLDWLASTLKEM  180 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~~~  180 (193)
                      +|+++++++|.+.+...
T Consensus       369 ~Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          369 QGIDSLETAILEIVQTG  385 (462)
T ss_dssp             BSHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHhcc
Confidence            99999999999988654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.89  E-value=2.5e-23  Score=165.54  Aligned_cols=156  Identities=20%  Similarity=0.117  Sum_probs=111.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC----c---c-c--cccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGE----V---L-S--TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNN   84 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~----~---~-~--~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (193)
                      .+.++|+++|+.++|||||+++|.+..    .   . +  ...|....+..+......+.+|||||+++|...+..++..
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~   96 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   96 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence            357899999999999999999999876    2   1 1  1345555566677788999999999999999999999999


Q ss_pred             CCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--cC-CCCceEEEEe
Q 029446           85 TDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF--DL-KNRKWHIQGT  158 (193)
Q Consensus        85 ~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~  158 (193)
                      +|++++|+|+++   +++.+.+.    . ...   .+.|.|+|+||+|+.++...++..+++...  .. .-.+.+++++
T Consensus        97 aD~~ilVvda~~g~~~qt~e~l~----~-~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v  168 (482)
T 1wb1_A           97 IDLALIVVDAKEGPKTQTGEHML----I-LDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI  168 (482)
T ss_dssp             CCEEEEEEETTTCSCHHHHHHHH----H-HHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred             CCEEEEEEecCCCccHHHHHHHH----H-HHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence            999999999987   34433332    1 121   367889999999998642222222211100  00 0115689999


Q ss_pred             ccccCCCHHHHHHHHHHHHH
Q 029446          159 CALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       159 Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      ||++|+|+++++++|.+.+.
T Consensus       169 SA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          169 SAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999999875

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.2e-23  Score=148.58  Aligned_cols=125  Identities=26%  Similarity=0.375  Sum_probs=96.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcC----C
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNN----T   85 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~   85 (193)
                      ....++|+++|++|+|||||++++.+..+...    .++.+.     .+....+.+|||||+..+...+..++..    +
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  119 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV  119 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence            46789999999999999999999998876432    233222     2256789999999999988777777766    8


Q ss_pred             CEEEEEEECC-ChhhHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 029446           86 DGLIYVVDSL-DRERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGAMTPMEVCEGL  143 (193)
Q Consensus        86 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  143 (193)
                      |++++|+|++ +..++.....|+..+....   ...+.|+++|+||+|+.+.....++.+.+
T Consensus       120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l  181 (193)
T 2ged_A          120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL  181 (193)
T ss_dssp             EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence            9999999999 8999999988888876532   22579999999999998876665555443

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.89  E-value=1.5e-22  Score=158.42  Aligned_cols=157  Identities=15%  Similarity=0.037  Sum_probs=105.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc----cc--ccccceeEEEEEE---------------c--------CEEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL----ST--VPTIGFNVEKVQY---------------K--------NVIFT   64 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~----~~--~~t~~~~~~~~~~---------------~--------~~~~~   64 (193)
                      ....++|+++|+.++|||||+++|.+....    +.  ..|....+.....               .        ...+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            346799999999999999999999864322    22  2255554433222               0        17899


Q ss_pred             EEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh----hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----H
Q 029446           65 VWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR----ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----P  136 (193)
Q Consensus        65 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~  136 (193)
                      +|||||+++|...+...+..+|++++|+|+++.    ++.+.+.. +.   ..   ...|+|+|+||+|+.+...    .
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~-~~---~l---~~~~iivv~NK~Dl~~~~~~~~~~  157 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA-LE---IL---GIDKIIIVQNKIDLVDEKQAEENY  157 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH-HH---HT---TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH-HH---Hc---CCCeEEEEEEccCCCCHHHHHHHH
Confidence            999999999988888888899999999999853    44443332 11   11   2357999999999987543    2


Q ss_pred             hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446          137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                      +++.+.+..  ....+++++++||++|+|+++++++|.+.+..
T Consensus       158 ~~i~~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          158 EQIKEFVKG--TIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             HHHHHHHTT--STTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhh--cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            333333321  11245689999999999999999999987753

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.89  E-value=6.5e-23  Score=155.33  Aligned_cols=133  Identities=22%  Similarity=0.312  Sum_probs=107.5

Q ss_pred             cccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCC
Q 029446           47 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAIIKDPFM  116 (193)
Q Consensus        47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~  116 (193)
                      +|+|+....+..+.+.+++||++||+.++..|..++++++++|+|+|++          +..++.+...|+..+......
T Consensus       147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~  226 (340)
T 4fid_A          147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL  226 (340)
T ss_dssp             CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred             ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence            4677778888888999999999999999999999999999999999998          788999999999999887666


Q ss_pred             CCCeEEEEEeCCCCCCC-----------------CCHhHH----Hhhh-------CCCcCCC-----------CceEEEE
Q 029446          117 LNSVILVFANKQDMKGA-----------------MTPMEV----CEGL-------GLFDLKN-----------RKWHIQG  157 (193)
Q Consensus       117 ~~~p~ivv~nK~Dl~~~-----------------~~~~~~----~~~~-------~~~~~~~-----------~~~~~~~  157 (193)
                      .+.|+|+++||+|+..+                 ...++.    .+.+       .......           +.+.+++
T Consensus       227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~  306 (340)
T 4fid_A          227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP  306 (340)
T ss_dssp             TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred             CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence            78999999999998641                 112221    1222       1111111           4688999


Q ss_pred             eccccCCCHHHHHHHHHHHHHh
Q 029446          158 TCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       158 ~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                      |||++..||+.+|+.+.+.+.+
T Consensus       307 TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          307 TNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             ECTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEeeCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999998876

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=1.7e-22  Score=159.46  Aligned_cols=160  Identities=14%  Similarity=0.056  Sum_probs=107.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCCHHh------------HH
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL------------WR   79 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------------~~   79 (193)
                      ..++|+++|++|||||||+|++.+......    ..|.......+.+++..+.+|||+|..+....            ..
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~  258 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV  258 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence            458999999999999999999998865321    22333344566778889999999997433221            13


Q ss_pred             hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEE
Q 029446           80 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQG  157 (193)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~  157 (193)
                      .+++.+|++++|+|+++..+.+..  .+...+..   .+.|+++|+||+|+.+...  .+++.+.+..........++++
T Consensus       259 ~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (439)
T 1mky_A          259 DSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF  333 (439)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence            466789999999999876655442  23333332   4789999999999976432  2333222211111223457999


Q ss_pred             eccccCCCHHHHHHHHHHHHHhh
Q 029446          158 TCALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       158 ~Sa~~~~gi~~~~~~l~~~~~~~  180 (193)
                      +||++|.|++++++.+.+.+.+.
T Consensus       334 ~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          334 TSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999877654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.89  E-value=5.4e-24  Score=170.18  Aligned_cols=159  Identities=19%  Similarity=0.106  Sum_probs=114.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--ccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVP--TIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      .+.++|+++|++++|||||+++|.+..+.. ..+  |.......+.. .+..+.+|||||++.|...+..+++.+|++++
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            367899999999999999999999876542 222  22233333333 45689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCC-cCCCCceEEEEeccccCCCHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLF-DLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      |+|+++....+... .+..+..    .+.|+|+|+||+|+.+...  ..+....+... ......++++++||++|+|++
T Consensus        82 VVDa~dg~~~qt~e-~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~  156 (537)
T 3izy_P           82 VVAADDGVMKQTVE-SIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM  156 (537)
T ss_dssp             ECBSSSCCCHHHHH-HHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred             EEECCCCccHHHHH-HHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence            99999865544432 3333322    4689999999999975321  11122222211 111235789999999999999


Q ss_pred             HHHHHHHHHHH
Q 029446          168 EGLDWLASTLK  178 (193)
Q Consensus       168 ~~~~~l~~~~~  178 (193)
                      +++++|...+.
T Consensus       157 eLle~I~~l~~  167 (537)
T 3izy_P          157 ALAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHHT
T ss_pred             hHHHHHHHhhh
Confidence            99999998764

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.89  E-value=3.3e-22  Score=160.34  Aligned_cols=114  Identities=18%  Similarity=0.208  Sum_probs=90.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc------------------CCccc-------cccccceeEEEEEEcCEEEEEEecC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI------------------GEVLS-------TVPTIGFNVEKVQYKNVIFTVWDVG   69 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~------------------~~~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~   69 (193)
                      .+..+|+++|++|+|||||+++|+.                  ....+       ...|.......+.+.+..+.+||||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence            3567999999999999999999961                  11111       1335555667778889999999999


Q ss_pred             CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      |+.+|...+..+++.+|++++|+|+++..+.+... .|..+..    .++|+++|+||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCccc
Confidence            99999999999999999999999999876665554 3344332    47899999999999764

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.89  E-value=1.4e-22  Score=164.25  Aligned_cols=156  Identities=22%  Similarity=0.179  Sum_probs=110.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccc-----cccceeEEEEE----------------EcCEEEEEEecCCCCCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTV-----PTIGFNVEKVQ----------------YKNVIFTVWDVGGQEKL   74 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~~----------------~~~~~~~i~D~~g~~~~   74 (193)
                      +.++|+++|++++|||||+++|.+..+..+.     ++.+..+....                +....+.+|||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            5789999999999999999999876554322     24444433221                11236999999999999


Q ss_pred             HHhHHhhhcCCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------Hh
Q 029446           75 RPLWRHYFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--------------PM  137 (193)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------------~~  137 (193)
                      ...+..+++.+|++++|+|+++   +++++.+.    .+..    .+.|+|+++||+|+.+...              ..
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            9998888899999999999998   56655443    2222    4789999999999975211              00


Q ss_pred             -----------HHHhhh---CCCc-----C--CCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446          138 -----------EVCEGL---GLFD-----L--KNRKWHIQGTCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       138 -----------~~~~~~---~~~~-----~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                                 ++...+   ++..     .  ....++++++||++|+|+++++++|...+..
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence                       111111   1100     0  1345689999999999999999999987763

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.88  E-value=1e-22  Score=153.21  Aligned_cols=153  Identities=15%  Similarity=0.057  Sum_probs=107.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccc----cccceeEEEEEEcCEEEEEEecCCCC-CC--------HHhHHhhh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTV----PTIGFNVEKVQYKNVIFTVWDVGGQE-KL--------RPLWRHYF   82 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~g~~-~~--------~~~~~~~~   82 (193)
                      +..+|+++|++|+|||||+|++.+..+....    .|.......+.....++.+|||||.. ..        ......++
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l   86 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI   86 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence            4568999999999999999999998764221    22222334456678999999999987 22        22234567


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCcCCCCce-EEEEecc
Q 029446           83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKW-HIQGTCA  160 (193)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  160 (193)
                      +.+|++++|+|+++   +.....++...+..   .+.|+|+++||+|+... ....+..+.+.    +..++ .++++||
T Consensus        87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~----~~~~~~~~i~iSA  156 (301)
T 1ega_A           87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLA----SQMNFLDIVPISA  156 (301)
T ss_dssp             CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHH----TTSCCSEEEECCT
T ss_pred             hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHH----HhcCcCceEEEEC
Confidence            88999999999976   33333455444443   47899999999998762 11222222221    12233 6999999


Q ss_pred             ccCCCHHHHHHHHHHHHH
Q 029446          161 LKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~  178 (193)
                      +++.|++++++.+.+.+.
T Consensus       157 ~~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          157 ETGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             TTTTTHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHhCC
Confidence            999999999999988764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.88  E-value=2.4e-22  Score=154.89  Aligned_cols=147  Identities=10%  Similarity=0.015  Sum_probs=110.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   98 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (193)
                      +|+++|++++|||||+++|.     ....|.+..+..+......+.+|||||+++|.......++.+|++++|+| ++. 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g-   95 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG-   95 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-
T ss_pred             EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-
Confidence            99999999999999999998     45667777777777778899999999999999888888899999999999 543 


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCeE-EEEEe-CCCCCCCCCHh----HHHhhhCCCcCCCCceEEEE--ecccc---CCCHH
Q 029446           99 RIGKAKQEFQAIIKDPFMLNSVI-LVFAN-KQDMKGAMTPM----EVCEGLGLFDLKNRKWHIQG--TCALK---GDGLY  167 (193)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~gi~  167 (193)
                      .+.....++..+..    .+.|. |+++| |+|+ +....+    ++.+.+..  .....+++++  +||++   ++|++
T Consensus        96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~--~~~~~~~ii~~~~SA~~~~~g~gi~  168 (370)
T 2elf_A           96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSG--TVLQDWECISLNTNKSAKNPFEGVD  168 (370)
T ss_dssp             CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT--STTTTCEEEECCCCTTSSSTTTTHH
T ss_pred             CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh--cCCCceEEEecccccccCcCCCCHH
Confidence            23333444444332    35666 89999 9999 432112    22222221  1113469999  99999   99999


Q ss_pred             HHHHHHHHHHHh
Q 029446          168 EGLDWLASTLKE  179 (193)
Q Consensus       168 ~~~~~l~~~~~~  179 (193)
                      ++++.|.+.+..
T Consensus       169 ~L~~~l~~~~~~  180 (370)
T 2elf_A          169 ELKARINEVAEK  180 (370)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhccc
Confidence            999999988764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.88  E-value=1.5e-22  Score=158.55  Aligned_cols=158  Identities=18%  Similarity=0.090  Sum_probs=111.5

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCc---c-cc--ccccceeEEEEEEc-----------------------CEEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEV---L-ST--VPTIGFNVEKVQYK-----------------------NVIF   63 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~---~-~~--~~t~~~~~~~~~~~-----------------------~~~~   63 (193)
                      .....++|+++|+.++|||||+++|++...   . +.  ..|....+......                       ...+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            345679999999999999999999985432   2 22  23555554433221                       2789


Q ss_pred             EEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh----hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----
Q 029446           64 TVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR----ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----  135 (193)
Q Consensus        64 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----  135 (193)
                      .+|||||+++|.......+..+|++++|+|+++.    ++.+.+.. +...      ...|+|+|+||+|+.+...    
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~-~~~~------~~~~iivviNK~Dl~~~~~~~~~  158 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA-LQII------GQKNIIIAQNKIELVDKEKALEN  158 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH-HHHH------TCCCEEEEEECGGGSCHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH-HHHc------CCCcEEEEEECccCCCHHHHHHH
Confidence            9999999999988888888899999999999853    34443322 2211      2357999999999987532    


Q ss_pred             HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446          136 PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                      .+++.+.+..  ....+++++++||++|+|+++++++|.+.+..
T Consensus       159 ~~~i~~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          159 YRQIKEFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHHHHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            1223332221  11245689999999999999999999987753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=9.5e-22  Score=145.16  Aligned_cols=162  Identities=16%  Similarity=0.154  Sum_probs=106.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-c-cc---cccceeEEEEEEcCEEEEEEecCCCCCCH-----------Hh
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-S-TV---PTIGFNVEKVQYKNVIFTVWDVGGQEKLR-----------PL   77 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~-~~---~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-----------~~   77 (193)
                      ....++|+|+|++|+|||||+|++.+.... . ..   .|.........+.+..+.+|||||...+.           ..
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            446799999999999999999999987733 2 22   34444555667788999999999976542           22


Q ss_pred             HHhhhcCCCEEEEEEECCChhhH-HHHHHHHHHHHcCCCCCCCeEEEEEe-CCCCCCCCCHhH------------HHhhh
Q 029446           78 WRHYFNNTDGLIYVVDSLDRERI-GKAKQEFQAIIKDPFMLNSVILVFAN-KQDMKGAMTPME------------VCEGL  143 (193)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~------------~~~~~  143 (193)
                      ...+++++|++++|+|+++.... ..+..++......  ....|.|+++| |+|+... ...+            +.+.+
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~  175 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC  175 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence            23467899999999999863322 2233444443321  11356666666 9999854 2322            22222


Q ss_pred             CCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          144 GLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       144 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      ...   ...+..+++||+++.|+++++++|.+.+....
T Consensus       176 ~~~---~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          176 GGR---ICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             TTC---EEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCe---EEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            210   00011178999999999999999999987643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.88  E-value=5.2e-22  Score=152.69  Aligned_cols=156  Identities=19%  Similarity=0.129  Sum_probs=107.0

Q ss_pred             ccE-EEEEcCCCCCHHHHHHHHhcCCcc---ccccccceeEEEEEEcCEEEEEEecCCCCC---------CHHhHHhhhc
Q 029446           17 EMR-VVMLGLDAAGKTTILYKLHIGEVL---STVPTIGFNVEKVQYKNVIFTVWDVGGQEK---------LRPLWRHYFN   83 (193)
Q Consensus        17 ~~~-v~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~   83 (193)
                      .++ |+++|.+|+|||||+|++++....   ...+|.+.....+.+.+..+.+|||+|...         ++..+. .+.
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~  256 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK  256 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence            355 999999999999999999988763   235666677778888888999999999622         333333 468


Q ss_pred             CCCEEEEEEECCChh--hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH---HH----hhhCCCcCCCCceE
Q 029446           84 NTDGLIYVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME---VC----EGLGLFDLKNRKWH  154 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~----~~~~~~~~~~~~~~  154 (193)
                      .+|++++|+|++++.  ....... +..++......+.|+|+|+||+|+.+.. ..+   ..    ..+.     ..+.+
T Consensus       257 ~aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~-----~~~~~  329 (364)
T 2qtf_A          257 YSDALILVIDSTFSENLLIETLQS-SFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY-----SPIFD  329 (364)
T ss_dssp             GSSEEEEEEETTSCHHHHHHHHHH-HHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC-----SCEEE
T ss_pred             hCCEEEEEEECCCCcchHHHHHHH-HHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc-----CCCCc
Confidence            899999999998875  3333322 2333332223578999999999987643 221   11    2220     12346


Q ss_pred             EEEeccccCCCHHHHHHHHHHHHHhh
Q 029446          155 IQGTCALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       155 ~~~~Sa~~~~gi~~~~~~l~~~~~~~  180 (193)
                      ++++||++++|+++++++|.+.+...
T Consensus       330 ~~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          330 VIPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHHHhccc
Confidence            89999999999999999999877543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=1.1e-21  Score=154.62  Aligned_cols=161  Identities=17%  Similarity=0.063  Sum_probs=105.4

Q ss_pred             HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc---cc---------------------------------cccc
Q 029446            5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV---LS---------------------------------TVPT   48 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~---~~---------------------------------~~~t   48 (193)
                      +..++.+......++|+++|++++|||||+++|++...   ..                                 ...|
T Consensus        12 i~~~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiT   91 (434)
T 1zun_B           12 ILAYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGIT   91 (434)
T ss_dssp             ----CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CC
T ss_pred             HHHHHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcE
Confidence            34444554555669999999999999999999976431   00                                 0123


Q ss_pred             cceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446           49 IGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ  128 (193)
Q Consensus        49 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  128 (193)
                      ....+..+......+.+|||||+++|...+..++..+|++++|+|+++....+. ..++......   ...|+|+|+||+
T Consensus        92 i~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~---~~~~iIvviNK~  167 (434)
T 1zun_B           92 IDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL---GIKHIVVAINKM  167 (434)
T ss_dssp             CCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEEECT
T ss_pred             EEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEEcC
Confidence            333344555678899999999999999999889999999999999987643222 2333322221   224699999999


Q ss_pred             CCCCCCC--HhHHHhhhCC--CcCC--CCceEEEEeccccCCCHHHH
Q 029446          129 DMKGAMT--PMEVCEGLGL--FDLK--NRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus       129 Dl~~~~~--~~~~~~~~~~--~~~~--~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      |+.+...  .+++.++...  ....  ...++++++||++|+|++++
T Consensus       168 Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          168 DLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             cCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            9986421  1112111110  0011  23478999999999999874

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=9.7e-22  Score=159.29  Aligned_cols=155  Identities=15%  Similarity=0.157  Sum_probs=108.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC--cc---------cc---cccccee----EEEEEEc-----CEEEEEEecCCCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGE--VL---------ST---VPTIGFN----VEKVQYK-----NVIFTVWDVGGQE   72 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~--~~---------~~---~~t~~~~----~~~~~~~-----~~~~~i~D~~g~~   72 (193)
                      +..+|+++|+.++|||||+++|+...  ..         ++   ..+.|++    ...+.+.     ...+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            45799999999999999999997621  11         11   1122333    2344443     4789999999999


Q ss_pred             CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcCC
Q 029446           73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLK  149 (193)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~  149 (193)
                      +|...+..+++.+|++++|+|+++..+.+....|.... .    .+.|+|+|+||+|+......   +++.+.++..   
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~---  154 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID---  154 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC---
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC---
Confidence            99999999999999999999999877777766555444 2    46899999999999875321   2333333321   


Q ss_pred             CCceEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446          150 NRKWHIQGTCALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       150 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  180 (193)
                        ..+++++||++|.|+++++++|.+.+...
T Consensus       155 --~~~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          155 --ATDAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             --CTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             --cceEEEeecccCCCchhHHHHHhhcCCCc
Confidence              11489999999999999999999988643

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.87  E-value=1.7e-22  Score=161.17  Aligned_cols=153  Identities=18%  Similarity=0.143  Sum_probs=103.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCc--c--------------------------------ccccccceeEEEEEEc
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV--L--------------------------------STVPTIGFNVEKVQYK   59 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~--~--------------------------------~~~~t~~~~~~~~~~~   59 (193)
                      ....+||+++|++++|||||+++|+....  .                                ....|.......+...
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~  109 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  109 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence            45679999999999999999999975411  0                                0123444555666777


Q ss_pred             CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHH-----HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK-----AKQEFQAIIKDPFMLNSVILVFANKQDMKGAM  134 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  134 (193)
                      ...+.+|||||+++|......++..+|++++|+|+++..+...     .......+....  ...|+|+|+||+|+.+..
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence            8999999999999999999999999999999999988643221     222222222221  235699999999998732


Q ss_pred             C--HhHHHhhh----CCCcCCCCceEEEEeccccCCCHHH
Q 029446          135 T--PMEVCEGL----GLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       135 ~--~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      .  .+++.+.+    ........+++++++||++|+|+++
T Consensus       188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            1  12222211    1111122367899999999999874

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.87  E-value=7.1e-22  Score=154.43  Aligned_cols=160  Identities=21%  Similarity=0.166  Sum_probs=111.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC--------Cccc------------cccccceeEEEEEEcCEEEEEEecCCCCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG--------EVLS------------TVPTIGFNVEKVQYKNVIFTVWDVGGQEK   73 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~   73 (193)
                      ....++|+++|++++|||||+++|.+.        .+..            ...|.......+......+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            346799999999999999999999873        2111            12244444445555678999999999999


Q ss_pred             CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCc
Q 029446           74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMT-PM----EVCEGLGLFD  147 (193)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~~----~~~~~~~~~~  147 (193)
                      |......++..+|++++|+|+++....+ ...++..+..    .+.| +|+|+||+|+.+... .+    ++.+.+....
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998765433 3344444433    3677 889999999985311 11    1222221111


Q ss_pred             CCCCceEEEEeccccCCC------------------HHHHHHHHHHHHH
Q 029446          148 LKNRKWHIQGTCALKGDG------------------LYEGLDWLASTLK  178 (193)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~g------------------i~~~~~~l~~~~~  178 (193)
                      +....++++++||++|.|                  ++++++.|.+.+.
T Consensus       163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            122346899999999987                  7777777777664

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.87  E-value=4.3e-22  Score=156.86  Aligned_cols=154  Identities=17%  Similarity=0.186  Sum_probs=102.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC--Ccc--------------------------------ccccccceeEEEEEEcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG--EVL--------------------------------STVPTIGFNVEKVQYKN   60 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~   60 (193)
                      ...++|+++|++++|||||+++|+..  .+.                                ....|....+..+....
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            46789999999999999999999864  221                                01234555555667778


Q ss_pred             EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHH------HHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446           61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEF------QAIIKDPFMLNSVILVFANKQDMKGAM  134 (193)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~------~~~~~~~~~~~~p~ivv~nK~Dl~~~~  134 (193)
                      ..+.+|||||+.+|...+..++..+|++++|+|+++ .+|++...|.      ..+....  ...|+|+++||+|+.+..
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence            899999999999999999999999999999999998 5666433211      1111111  124689999999998731


Q ss_pred             -CH-------hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446          135 -TP-------MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus       135 -~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                       ..       +++.+.+....+....++++++||++|+|+.++++
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence             11       12222221111122346899999999999975543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.87  E-value=2.8e-21  Score=156.42  Aligned_cols=158  Identities=16%  Similarity=0.144  Sum_probs=110.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC--Ccc---------cc-------ccccceeEEEEEEc-----CEEEEEEecCCCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG--EVL---------ST-------VPTIGFNVEKVQYK-----NVIFTVWDVGGQE   72 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~--~~~---------~~-------~~t~~~~~~~~~~~-----~~~~~i~D~~g~~   72 (193)
                      +..+|+++|+.++|||||+++|+..  .+.         ++       ..|.......+.+.     ...+.+|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            4579999999999999999999752  111         10       11222222334332     3789999999999


Q ss_pred             CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCc
Q 029446           73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK  152 (193)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  152 (193)
                      +|...+..+++.+|++++|+|+++..+.+....|.... .    .+.|+|+|+||+|+.... .++..+++... +.-..
T Consensus        85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~-lg~~~  157 (600)
T 2ywe_A           85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV-LGLDP  157 (600)
T ss_dssp             GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT-SCCCG
T ss_pred             hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHh-hCCCc
Confidence            99999999999999999999999887777766655543 2    478999999999998753 33322222110 01111


Q ss_pred             eEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446          153 WHIQGTCALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       153 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  180 (193)
                      .+++++||++|.|+++++++|.+.+...
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhcccc
Confidence            2489999999999999999999988643

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.87  E-value=2.5e-21  Score=152.54  Aligned_cols=154  Identities=20%  Similarity=0.182  Sum_probs=104.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCc--c--------------------------------ccccccceeEEEEEEc
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEV--L--------------------------------STVPTIGFNVEKVQYK   59 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~--~--------------------------------~~~~t~~~~~~~~~~~   59 (193)
                      ....++|+++|++++|||||+++|....-  .                                ....|....+..+...
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            35678999999999999999999954311  0                                0123444445556667


Q ss_pred             CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhh---HH---HHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCC
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER---IG---KAKQEFQAIIKDPFMLNSV-ILVFANKQDMKG  132 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  132 (193)
                      ...+.+|||||+++|......++..+|++++|+|+++...   |+   .....+... ..   .+.| +|+|+||+|+..
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~---~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT---AGVKHLIVLINKMDDPT  169 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH---cCCCeEEEEeecCCCcc
Confidence            8899999999999999999999999999999999987531   11   111111111 11   3455 899999999864


Q ss_pred             CC----CHhHHHhhh----CCCcCC-CCceEEEEeccccCCCHHHHHH
Q 029446          133 AM----TPMEVCEGL----GLFDLK-NRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus       133 ~~----~~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      ..    ..+++.+++    ....+. ..+++++++||++|+|++++.+
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            31    112222211    111111 1256899999999999999655

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.87  E-value=5.4e-22  Score=151.75  Aligned_cols=123  Identities=23%  Similarity=0.387  Sum_probs=94.0

Q ss_pred             cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC----------ChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446           59 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ  128 (193)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  128 (193)
                      ..+.+.+|||+|++.++..|..++++++++|+|+|++          +..++++...|+..+.......+.|+|+|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            4588999999999999999999999999999999998          789999999999999876555789999999999


Q ss_pred             CCCCCC----C-------------------HhHHHh----hh------CC-CcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446          129 DMKGAM----T-------------------PMEVCE----GL------GL-FDLKNRKWHIQGTCALKGDGLYEGLDWLA  174 (193)
Q Consensus       129 Dl~~~~----~-------------------~~~~~~----~~------~~-~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  174 (193)
                      |+..+.    .                   .++..+    .+      .. .......+.+++|||++++||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            984320    0                   111111    10      00 00012345689999999999999999999


Q ss_pred             HHHHhhh
Q 029446          175 STLKEMR  181 (193)
Q Consensus       175 ~~~~~~~  181 (193)
                      +.+.+..
T Consensus       341 ~~I~~~~  347 (354)
T 2xtz_A          341 ETLRRRN  347 (354)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887554

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.87  E-value=1.6e-22  Score=150.36  Aligned_cols=158  Identities=15%  Similarity=0.220  Sum_probs=91.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-------ccccceeEEEEEE--c--CEEEEEEecCCCC-------CC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL--ST-------VPTIGFNVEKVQY--K--NVIFTVWDVGGQE-------KL   74 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~--~~-------~~t~~~~~~~~~~--~--~~~~~i~D~~g~~-------~~   74 (193)
                      ...++|+++|.+|+|||||+|++++....  .+       .+|++.+......  +  .+.+.+|||||..       .+
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            46799999999999999999998876543  22       5666666655443  2  3699999999963       34


Q ss_pred             HHhH-------HhhhcC-------------CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446           75 RPLW-------RHYFNN-------------TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM  134 (193)
Q Consensus        75 ~~~~-------~~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  134 (193)
                      ..+.       ..++..             +|+++++++.+... +......+...+..    ++|+|+|+||+|+....
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence            4433       333333             78999999876522 22222333333332    78999999999987643


Q ss_pred             CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          135 TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      +.....+... ..+...+++++++||++++|+++++++|.+.+.
T Consensus       161 e~~~~~~~i~-~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          161 ECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             HHHHHHHHHH-HHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred             HHHHHHHHHH-HHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence            3322211111 112234567899999999999999999988764

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.87  E-value=3.3e-22  Score=155.85  Aligned_cols=158  Identities=19%  Similarity=0.093  Sum_probs=108.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC-------cc------------ccccccceeEEEEEEcCEEEEEEecCCCCCCHH
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGE-------VL------------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP   76 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~   76 (193)
                      ..++|+++|++++|||||+++|.+..       +.            ....|.+.....+......+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            46899999999999999999998731       11            012233333334555678999999999999988


Q ss_pred             hHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-----hHHHhhhCCCcCCC
Q 029446           77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-----MEVCEGLGLFDLKN  150 (193)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~  150 (193)
                      ....++..+|++++|+|+++....+.. ..+..+..    .+.| +|+++||+|+.+....     +++.+.+....+..
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  156 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            888899999999999999875433332 23333222    3677 6899999999852111     12222221111122


Q ss_pred             CceEEEEeccccCCC----------HHHHHHHHHHHHH
Q 029446          151 RKWHIQGTCALKGDG----------LYEGLDWLASTLK  178 (193)
Q Consensus       151 ~~~~~~~~Sa~~~~g----------i~~~~~~l~~~~~  178 (193)
                      ..++++++||++|.|          ++++++.|.+.+.
T Consensus       157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            346899999999764          8889998888765

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.86  E-value=5.8e-23  Score=163.00  Aligned_cols=153  Identities=22%  Similarity=0.170  Sum_probs=109.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      .+.++|+++|++++|||||+++|.+..+...   ..|.......+..++..+.+|||||++.|...+...+..+|++++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV   81 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV   81 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence            4678999999999999999999987554321   1232233333444567899999999999999998889999999999


Q ss_pred             EECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--cCCC--CceEEEEeccccCC
Q 029446           92 VDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF--DLKN--RKWHIQGTCALKGD  164 (193)
Q Consensus        92 ~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~Sa~~~~  164 (193)
                      +|+++   +++.+.+    .....    .+.|+|+++||+|+.+... +++...+...  ..+.  ..++++++||++|+
T Consensus        82 Vda~~g~~~qT~e~l----~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I           82 VAADDGVMPQTIEAI----QHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             EETTTBSCTTTHHHH----HHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             eecccCccHHHHHHH----HHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            99987   3444332    22221    4688999999999976321 1222222110  1122  23799999999999


Q ss_pred             CHHHHHHHHHHH
Q 029446          165 GLYEGLDWLAST  176 (193)
Q Consensus       165 gi~~~~~~l~~~  176 (193)
                      |+++++++|...
T Consensus       153 gI~eLle~I~~~  164 (501)
T 1zo1_I          153 GIDELLDAILLQ  164 (501)
T ss_dssp             TCTTHHHHTTTT
T ss_pred             Ccchhhhhhhhh
Confidence            999999998753

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2.9e-22  Score=163.26  Aligned_cols=153  Identities=18%  Similarity=0.154  Sum_probs=104.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc----------------------------------cccccceeEEEEEEcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS----------------------------------TVPTIGFNVEKVQYKN   60 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~~   60 (193)
                      ...++|+++|++|+|||||+++|++.....                                  .+.|.......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            457899999999999999999998653210                                  1235555566677788


Q ss_pred             EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh---hH--HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 029446           61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI--GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT  135 (193)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  135 (193)
                      ..+.+|||||+++|...+..++..+|++|+|+|+++..   ++  .........+....  ...|+|+|+||+|+.+...
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhH
Confidence            99999999999999999999999999999999998642   10  01111222222221  2356999999999987321


Q ss_pred             --HhHHHhhh----CCCcCCCCceEEEEeccccCCCHHHH
Q 029446          136 --PMEVCEGL----GLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus       136 --~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                        .+++...+    ........+++++++||++|.|+.++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence              11122111    11111223568999999999999876

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.86  E-value=3.8e-21  Score=144.52  Aligned_cols=158  Identities=18%  Similarity=0.175  Sum_probs=103.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-------ccccc-----------------c---ee---------------
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-------TVPTI-----------------G---FN---------------   52 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-------~~~t~-----------------~---~~---------------   52 (193)
                      ...++|+|+|.+|+|||||+|+|++..+..       ..|+.                 |   .+               
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            456899999999999999999999987631       11210                 0   00               


Q ss_pred             ------------EEEEEE-cCEEEEEEecCCCC-------------CCHHhHHhhhcCCCEEE-EEEECCChhhHHHHHH
Q 029446           53 ------------VEKVQY-KNVIFTVWDVGGQE-------------KLRPLWRHYFNNTDGLI-YVVDSLDRERIGKAKQ  105 (193)
Q Consensus        53 ------------~~~~~~-~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~  105 (193)
                                  ...+.. ....+.+|||||..             .+......+++.++.++ +|+|+++..+......
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                        001111 13689999999953             34556677888888777 6999987544443333


Q ss_pred             HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446          106 EFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus       106 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      ++..+ ..   .+.|+++|+||+|+.+... ..+..+.. ....+....+++++||+++.|+++++++|.+..
T Consensus       184 ~~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          184 IAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHH-CT---TCSSEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHh-CC---CCCeEEEEEEccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            44443 22   4789999999999986533 22222211 011111234799999999999999999988743

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.86  E-value=5.2e-22  Score=144.84  Aligned_cols=168  Identities=14%  Similarity=0.064  Sum_probs=100.9

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----ccccceeEEEEEEcCEEEEEEecCCCC-----------CCH
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST-----VPTIGFNVEKVQYKNVIFTVWDVGGQE-----------KLR   75 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~D~~g~~-----------~~~   75 (193)
                      ......++|+++|.+|+|||||+|++++..+...     ..|.......+.+.+..+.+|||||..           .+.
T Consensus        24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHH
Confidence            3445779999999999999999999999876532     234444455677788999999999943           334


Q ss_pred             HhHHhhhcCCCEEEEEEECCChhhHH-HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCcCCCC
Q 029446           76 PLWRHYFNNTDGLIYVVDSLDRERIG-KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---LFDLKNR  151 (193)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~  151 (193)
                      ..+..+++++|++++|+|+++....+ ....++.......  ...|+++|+||+|+......++......   ....+.+
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~  181 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF  181 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence            44455567889999999997543321 1122222222111  2458999999999876533221110000   0001222


Q ss_pred             ceEEEEecccc-----CCCHHHHHHHHHHHHHhhh
Q 029446          152 KWHIQGTCALK-----GDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       152 ~~~~~~~Sa~~-----~~gi~~~~~~l~~~~~~~~  181 (193)
                      +..++.+++..     ..++.++++.+.+.+.+..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~  216 (239)
T 3lxx_A          182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK  216 (239)
T ss_dssp             SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence            33466666553     3689999999988886543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.85  E-value=5.7e-23  Score=163.06  Aligned_cols=157  Identities=15%  Similarity=0.153  Sum_probs=90.5

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhc--CCcc--------------------------------ccccccceeEEEEEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHI--GEVL--------------------------------STVPTIGFNVEKVQY   58 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~   58 (193)
                      .....++|+++|+.++|||||+++|+.  +.+.                                ....|.+..+..+..
T Consensus        39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~  118 (467)
T 1r5b_A           39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET  118 (467)
T ss_dssp             SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred             cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence            446679999999999999999999964  2111                                113444555555666


Q ss_pred             cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh---hHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCC
Q 029446           59 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAM  134 (193)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~  134 (193)
                      ....+.+|||||+++|...+..++..+|++|+|+|+++..   +|+...++...+... ...+.| +|+|+||+|+.+..
T Consensus       119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~~~vp~iivviNK~Dl~~~~  197 (467)
T 1r5b_A          119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQGINHLVVVINKMDEPSVQ  197 (467)
T ss_dssp             SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHTTCSSEEEEEECTTSTTCS
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HHcCCCEEEEEEECccCCCcc
Confidence            7889999999999999999988899999999999998752   222111111111110 113566 99999999996522


Q ss_pred             -CH---h----HHHhhhCCC-cCC-CCceEEEEeccccCCCHHHHH
Q 029446          135 -TP---M----EVCEGLGLF-DLK-NRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus       135 -~~---~----~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                       +.   +    ++.+.+... .+. ..+++++++||++|.|+++++
T Consensus       198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence             11   1    122211100 011 125789999999999998754

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.85  E-value=3.9e-21  Score=152.17  Aligned_cols=151  Identities=19%  Similarity=0.133  Sum_probs=103.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC--Ccc--------------------------------ccccccceeEEEEEEcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG--EVL--------------------------------STVPTIGFNVEKVQYKN   60 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~   60 (193)
                      ...++|+++|++++|||||+++|++.  .+.                                ....|....+..+....
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            45689999999999999999999863  111                                02345555666677788


Q ss_pred             EEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh---hHH---HHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCC
Q 029446           61 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RIG---KAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGA  133 (193)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~  133 (193)
                      ..+.+|||||+++|......++..+|++++|+|+++..   +|+   .....+... ..   .+.| +|+|+||+|+.+.
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~~  160 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVKW  160 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGTT
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEccccccC
Confidence            99999999999999999999999999999999998652   221   112222222 21   3454 8999999999842


Q ss_pred             CC--HhHHHhhh----CCCcCCCCceEEEEeccccCCCHHHH
Q 029446          134 MT--PMEVCEGL----GLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus       134 ~~--~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      ..  .+++.+++    ....+...+++++++||++|+|+.++
T Consensus       161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            11  11121111    11111112468999999999998754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.84  E-value=2.7e-20  Score=142.80  Aligned_cols=136  Identities=24%  Similarity=0.338  Sum_probs=103.5

Q ss_pred             ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCC
Q 029446           46 VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPF  115 (193)
Q Consensus        46 ~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~  115 (193)
                      .+|+|+....+..+.+.+.+|||+|++.++..|..++++++++|+|+|+++          ..++.+...|+..+.....
T Consensus       186 ~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~  265 (362)
T 1zcb_A          186 RPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV  265 (362)
T ss_dssp             CCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred             CCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence            467888888888899999999999999999999999999999999999998          7899999999999987655


Q ss_pred             CCCCeEEEEEeCCCCCCC------------------CCHhHHHhhh-----CCCcCC-CCceEEEEeccccCCCHHHHHH
Q 029446          116 MLNSVILVFANKQDMKGA------------------MTPMEVCEGL-----GLFDLK-NRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus       116 ~~~~p~ivv~nK~Dl~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      ..+.|+|+++||+|+..+                  ...++.....     .+.... ...+.+++|||++++||+++|+
T Consensus       266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~  345 (362)
T 1zcb_A          266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR  345 (362)
T ss_dssp             GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred             hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHH
Confidence            678999999999998621                  2333333211     111111 4567899999999999999999


Q ss_pred             HHHHHHHhhh
Q 029446          172 WLASTLKEMR  181 (193)
Q Consensus       172 ~l~~~~~~~~  181 (193)
                      ++.+.+.+..
T Consensus       346 ~v~~~i~~~~  355 (362)
T 1zcb_A          346 DVKDTILHDN  355 (362)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.84  E-value=6.8e-20  Score=147.07  Aligned_cols=115  Identities=19%  Similarity=0.202  Sum_probs=84.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC--cc----------------c-------cccccceeEEEEEEcCEEEEEEecC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGE--VL----------------S-------TVPTIGFNVEKVQYKNVIFTVWDVG   69 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~--~~----------------~-------~~~t~~~~~~~~~~~~~~~~i~D~~   69 (193)
                      .+..+|+++|++|+|||||+++|+...  +.                +       ...|.......+.+....+.+||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            467899999999999999999998631  10                0       0112223344567788999999999


Q ss_pred             CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446           70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM  134 (193)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  134 (193)
                      |+.+|...+..++..+|++++|+|+++....+. ...+... ..   .+.|+++|+||+|+....
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~-~~---~~ipiivviNK~Dl~~~~  150 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT-RL---RDTPILTFMNKLDRDIRD  150 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH-TT---TTCCEEEEEECTTSCCSC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH-HH---cCCCEEEEEcCcCCcccc
Confidence            999999888889999999999999987543222 2223322 22   578999999999997653

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.84  E-value=1.2e-22  Score=164.96  Aligned_cols=163  Identities=19%  Similarity=0.170  Sum_probs=90.2

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------ccccccceeEEEEE
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL----------------------------------STVPTIGFNVEKVQ   57 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~----------------------------------~~~~t~~~~~~~~~   57 (193)
                      ......++|+++|++++|||||+++|+.....                                  ..+.|.......+.
T Consensus       172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~  251 (592)
T 3mca_A          172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE  251 (592)
T ss_dssp             SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred             ccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence            34456789999999999999999999642100                                  01223334444455


Q ss_pred             EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh---hH--HHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCC
Q 029446           58 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI--GKAKQEFQAIIKDPFMLNSV-ILVFANKQDMK  131 (193)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~  131 (193)
                      .....+.+|||||+.+|......++..+|++|+|+|+++..   ++  ......+..+...   .+.| +|+|+||+|+.
T Consensus       252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~  328 (592)
T 3mca_A          252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLM  328 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGG
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccc
Confidence            56789999999999999988888889999999999998532   11  1111111112221   2454 89999999998


Q ss_pred             CCCC--H----hHHHhhh-CCCcCCCCceEEEEeccccCCCHH--------------HHHHHHHHHH
Q 029446          132 GAMT--P----MEVCEGL-GLFDLKNRKWHIQGTCALKGDGLY--------------EGLDWLASTL  177 (193)
Q Consensus       132 ~~~~--~----~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~--------------~~~~~l~~~~  177 (193)
                      +...  .    .++...+ ....+...+++++++||++|.|+.              .+++.|...+
T Consensus       329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence            6321  1    2222322 222223346789999999999998              6777776544

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.84  E-value=9.4e-20  Score=150.55  Aligned_cols=115  Identities=22%  Similarity=0.136  Sum_probs=88.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC--Cc------------c-------ccccccceeEEEEEEcCEEEEEEecCCCCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG--EV------------L-------STVPTIGFNVEKVQYKNVIFTVWDVGGQEK   73 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~--~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~   73 (193)
                      .+..+|+|+|++|+|||||+++|...  .+            .       ...+|.......+.+....+.+|||||+..
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   89 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD   89 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence            56789999999999999999999831  11            0       123455555667777889999999999999


Q ss_pred             CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446           74 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM  134 (193)
Q Consensus        74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  134 (193)
                      |...+..+++.+|++++|+|+++..+.+....|. .+..    .+.|+++|+||+|+....
T Consensus        90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~~~~  145 (691)
T 1dar_A           90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK----YKVPRIAFANKMDKTGAD  145 (691)
T ss_dssp             CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTCC
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEEEEECCCcccCC
Confidence            9999999999999999999999877766654443 3333    478999999999998653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.83  E-value=1.6e-21  Score=150.14  Aligned_cols=162  Identities=15%  Similarity=0.201  Sum_probs=86.8

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-c-c--------ccccceeEEEEEE--c--CEEEEEEecCCC-------
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-S-T--------VPTIGFNVEKVQY--K--NVIFTVWDVGGQ-------   71 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~-~--------~~t~~~~~~~~~~--~--~~~~~i~D~~g~-------   71 (193)
                      .....++|+|+|++|+|||||+|+|++.... . +        .+|.+.....+..  .  ...+.+|||||+       
T Consensus        33 ~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~  112 (361)
T 2qag_A           33 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR  112 (361)
T ss_dssp             HHCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----------
T ss_pred             cCCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccH
Confidence            3456799999999999999999998765432 1 1        1344444333222  2  347999999998       


Q ss_pred             CCCHHhHH-------hhhcCC-------------CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           72 EKLRPLWR-------HYFNNT-------------DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        72 ~~~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      +.+..++.       .+++++             ++++|+++.. ..++..+...+...+.    .+.|+|+|+||+|+.
T Consensus       113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~  187 (361)
T 2qag_A          113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTL  187 (361)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCC
Confidence            66665554       555433             3566666542 3344554433333332    578999999999988


Q ss_pred             CCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          132 GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      .........+ .....++..+++++++||+++.| ++.+..+.+.+.+..
T Consensus       188 ~~~ev~~~k~-~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          188 TLKERERLKK-RILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI  235 (361)
T ss_dssp             CHHHHHHHHH-HHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred             CHHHHHHHHH-HHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence            6422221111 11122345677899999999998 888888888776554

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.82  E-value=2.9e-20  Score=157.79  Aligned_cols=160  Identities=22%  Similarity=0.173  Sum_probs=106.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC-------ccc--------ccccccee----EEEEEEcCEEEEEEecCCCCCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGE-------VLS--------TVPTIGFN----VEKVQYKNVIFTVWDVGGQEKL   74 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~-------~~~--------~~~t~~~~----~~~~~~~~~~~~i~D~~g~~~~   74 (193)
                      ....++|+++|++++|||||+++|.+..       +..        ...+.|++    ...+......+.+|||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3456899999999999999999998631       100        01223332    2345556789999999999999


Q ss_pred             HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-----hHHHhhhCCCcC
Q 029446           75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-----MEVCEGLGLFDL  148 (193)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-----~~~~~~~~~~~~  148 (193)
                      ......++..+|++|+|+|+++....+. ..++..+..    .++| +|+|+||+|+.+....     +++.+.+.....
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~  447 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF  447 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence            9999899999999999999987533222 233333322    3577 7899999999863211     112222211111


Q ss_pred             CCCceEEEEeccccC--------CCHHHHHHHHHHHHH
Q 029446          149 KNRKWHIQGTCALKG--------DGLYEGLDWLASTLK  178 (193)
Q Consensus       149 ~~~~~~~~~~Sa~~~--------~gi~~~~~~l~~~~~  178 (193)
                      ....++++++||++|        .|++++++.|.+.+.
T Consensus       448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            223568999999999        468888888887654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.82  E-value=4.9e-20  Score=131.62  Aligned_cols=159  Identities=19%  Similarity=0.161  Sum_probs=98.5

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEcCEEEEEEecCCCCC----------CHHhH
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYKNVIFTVWDVGGQEK----------LRPLW   78 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~i~D~~g~~~----------~~~~~   78 (193)
                      .......+|+++|++|||||||+|++.+..+. .+.++.|.+..  .+.... .+.+||+||...          ++...
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            44556789999999999999999999987732 33445444322  233333 678999999743          23333


Q ss_pred             Hhhh---cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCcCCCC
Q 029446           79 RHYF---NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLKNR  151 (193)
Q Consensus        79 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~  151 (193)
                      ..++   ..++++++++|++++.+....  .+..++..   .+.|+++++||+|+......    ......+..   ...
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---~~~  171 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FNG  171 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GCS
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---cCC
Confidence            3444   468999999999876554321  11122221   46889999999998764211    111121111   123


Q ss_pred             ceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446          152 KWHIQGTCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       152 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                      .+.++++||+++.|++++++.|.+.+.+
T Consensus       172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          172 DVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            4578999999999999999999887643

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.82  E-value=7.7e-19  Score=145.17  Aligned_cols=116  Identities=18%  Similarity=0.173  Sum_probs=88.9

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhc--CCcc------------c-------cccccceeEEEEEEcCEEEEEEecCCC
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHI--GEVL------------S-------TVPTIGFNVEKVQYKNVIFTVWDVGGQ   71 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~--~~~~------------~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~   71 (193)
                      ...+..+|+++|++|+|||||+++|+.  +.+.            +       ...|.......+.+....+.+|||||+
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~   85 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH   85 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence            345678999999999999999999984  2211            1       123444445567778899999999999


Q ss_pred             CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           72 EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      .++...+..+++.+|++++|+|+++..+.+.... |..+..    .+.|+++|+||+|+...
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~~~~----~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQATT----YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHHHHH----cCCCEEEEEECCCcccc
Confidence            9999999999999999999999998776665543 333433    47899999999999875

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.81  E-value=5.7e-19  Score=145.38  Aligned_cols=113  Identities=18%  Similarity=0.190  Sum_probs=85.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--------------cc-------ccccceeEEEEEEcCEEEEEEecCCCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL--------------ST-------VPTIGFNVEKVQYKNVIFTVWDVGGQE   72 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~--------------~~-------~~t~~~~~~~~~~~~~~~~i~D~~g~~   72 (193)
                      ..+..+|+++|+.|+|||||+++|.+....              ++       ..+.......+.+....+.+|||||+.
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~   85 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence            356679999999999999999999843211              10       123334445566678999999999999


Q ss_pred             CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           73 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      ++...+..+++.+|++++|+|+++....+.. .++..+..    .+.|+|+|+||+|+.
T Consensus        86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             chHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence            9999999999999999999999765443332 44444433    478999999999987

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.81  E-value=1.4e-19  Score=139.98  Aligned_cols=135  Identities=24%  Similarity=0.348  Sum_probs=107.4

Q ss_pred             cccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCC----------hhhHHHHHHHHHHHHcCCCC
Q 029446           47 PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPFM  116 (193)
Q Consensus        47 ~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~  116 (193)
                      +|+|+....+..+.+.+.+|||+|++.++..|..++++++++|+|+|+++          ..+|++...|+..+......
T Consensus       203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~  282 (402)
T 1azs_C          203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL  282 (402)
T ss_dssp             CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred             ceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence            57788888888889999999999999999999999999999999999998          89999999999999876666


Q ss_pred             CCCeEEEEEeCCCCCCC-----C------------------------C--HhHHHhhh-----CCC----cCCCCceEEE
Q 029446          117 LNSVILVFANKQDMKGA-----M------------------------T--PMEVCEGL-----GLF----DLKNRKWHIQ  156 (193)
Q Consensus       117 ~~~p~ivv~nK~Dl~~~-----~------------------------~--~~~~~~~~-----~~~----~~~~~~~~~~  156 (193)
                      .+.|+|+|+||+|+...     .                        .  ..+....+     ...    ......+.++
T Consensus       283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~  362 (402)
T 1azs_C          283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH  362 (402)
T ss_dssp             SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred             CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence            78999999999997431     0                        0  00111111     000    0012356789


Q ss_pred             EeccccCCCHHHHHHHHHHHHHhhh
Q 029446          157 GTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       157 ~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      +|||++++||+++|+.+.+.+.+..
T Consensus       363 ~TSA~d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          363 FTCAVDTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecCcCHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887554

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.81  E-value=8.4e-20  Score=150.92  Aligned_cols=162  Identities=19%  Similarity=0.226  Sum_probs=108.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc--ccccc-eeEE--------EEEE-------------------------
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST--VPTIG-FNVE--------KVQY-------------------------   58 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~--~~t~~-~~~~--------~~~~-------------------------   58 (193)
                      ...++|+|+|.+|+|||||+|+|++......  .|++. ++..        +..+                         
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            4679999999999999999999998775422  23221 1000        1110                         


Q ss_pred             ---------------------c----CEEEEEEecCCCCC---CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHH
Q 029446           59 ---------------------K----NVIFTVWDVGGQEK---LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI  110 (193)
Q Consensus        59 ---------------------~----~~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  110 (193)
                                           .    ...+.+|||||...   .......+++++|++++|+|++++.+......|...+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence                                 0    03689999999443   4556678889999999999999887776664443333


Q ss_pred             HcCCCCCCCeEEEEEeCCCCCCCC-----CHhH-------HHh----hhCCCcCC-----CCceEEEEeccc--------
Q 029446          111 IKDPFMLNSVILVFANKQDMKGAM-----TPME-------VCE----GLGLFDLK-----NRKWHIQGTCAL--------  161 (193)
Q Consensus       111 ~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~-------~~~----~~~~~~~~-----~~~~~~~~~Sa~--------  161 (193)
                       ..   .+.|+++|+||+|+....     +.++       +.+    .+.. ...     ....+++++||+        
T Consensus       227 -~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~-~~~~~g~~~~~~~v~~vSAk~al~~~~~  301 (695)
T 2j69_A          227 -KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAE-YCTVEGQNIYDERVFELSSIQALRRRLK  301 (695)
T ss_dssp             -TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGG-GGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred             -Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHH-hhcccccccCCCcEEEEeChHHHHhhcc
Confidence             22   367899999999986532     1101       111    1110 011     223469999999        


Q ss_pred             ------cCCCHHHHHHHHHHHHHhhh
Q 029446          162 ------KGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       162 ------~~~gi~~~~~~l~~~~~~~~  181 (193)
                            ++.|++++++.|.+.+...+
T Consensus       302 ~~~~~~~~~Gi~~L~~~L~~~l~~~~  327 (695)
T 2j69_A          302 NPQADLDGTGFPKFMDSLNTFLTRER  327 (695)
T ss_dssp             CTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred             CchhhhhccCHHHHHHHHHHHHHHhH
Confidence                  99999999999998776543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.81  E-value=1.5e-19  Score=133.53  Aligned_cols=117  Identities=16%  Similarity=0.127  Sum_probs=82.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhc-------
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFN-------   83 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-------   83 (193)
                      .+.++|+++|.+|+|||||+|+|++......    ..|.......+...+..+.+|||||+.++......+++       
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~  113 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV  113 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence            4789999999999999999999999875322    22444555667778899999999998876544333332       


Q ss_pred             --CCCEEEEEEECCChhhHHHH-HHHHHHHHcCC-CCCCCeEEEEEeCCCCCC
Q 029446           84 --NTDGLIYVVDSLDRERIGKA-KQEFQAIIKDP-FMLNSVILVFANKQDMKG  132 (193)
Q Consensus        84 --~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~  132 (193)
                        ++|++++|++++... +... ..++..+.... .....|+++|+||+|+.+
T Consensus       114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence              789999999987644 3332 23444433211 111248999999999864

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.80  E-value=5.4e-19  Score=133.79  Aligned_cols=160  Identities=19%  Similarity=0.191  Sum_probs=98.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-------cccc-ceeE---------------------------------
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST-------VPTI-GFNV---------------------------------   53 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~-------~~t~-~~~~---------------------------------   53 (193)
                      ...++|+|+|.+|+|||||+|+|++..+...       .|+. ....                                 
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            3568999999999999999999998876211       1100 0000                                 


Q ss_pred             -------------------EE---EEEcCEEEEEEecCCCCC-------------CHHhHHhhhcCCCEEEEEEECCChh
Q 029446           54 -------------------EK---VQYKNVIFTVWDVGGQEK-------------LRPLWRHYFNNTDGLIYVVDSLDRE   98 (193)
Q Consensus        54 -------------------~~---~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~   98 (193)
                                         ..   ......++.+|||||...             +......+++++|++++|+|+.+..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                               00   111346799999999753             4556677889999999999974322


Q ss_pred             -hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEecccc---CCCHHHHHHHH
Q 029446           99 -RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALK---GDGLYEGLDWL  173 (193)
Q Consensus        99 -s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~~~~l  173 (193)
                       .-......+. .+..   .+.|+++|+||+|+.+... ..+..+.. .......-+++..+|+.+   +.|++++++.+
T Consensus       182 ~~~~~~~~i~~-~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~  256 (315)
T 1jwy_B          182 LANSDALQLAK-EVDP---EGKRTIGVITKLDLMDKGTDAMEVLTGR-VIPLTLGFIGVINRSQEDIIAKKSIRESLKSE  256 (315)
T ss_dssp             STTCSHHHHHH-HHCS---SCSSEEEEEECTTSSCSSCCCHHHHTTS-SSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred             hhhhHHHHHHH-HhCC---CCCcEEEEEcCcccCCcchHHHHHHhCC-CccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence             1111112222 2222   4789999999999986543 12222210 001111223455566666   78999999999


Q ss_pred             HHHHHh
Q 029446          174 ASTLKE  179 (193)
Q Consensus       174 ~~~~~~  179 (193)
                      .+.+..
T Consensus       257 ~~~~~~  262 (315)
T 1jwy_B          257 ILYFKN  262 (315)
T ss_dssp             HHHHHT
T ss_pred             HHHHhC
Confidence            888764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.80  E-value=4.5e-21  Score=144.27  Aligned_cols=147  Identities=22%  Similarity=0.126  Sum_probs=111.9

Q ss_pred             HHHHHHhcCCcc--ccccccceeEEEEEE-cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh-hHHHHHHHH
Q 029446           32 TILYKLHIGEVL--STVPTIGFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEF  107 (193)
Q Consensus        32 sli~~l~~~~~~--~~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~  107 (193)
                      +++.++..+.+.  .+.||+|..+. ... .+..+++||+  +++++.+++.+++++|++++|+|++++. ++..+..|+
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l  108 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL  108 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence            688888888875  46789996554 332 2237999999  9999999999999999999999999987 688888888


Q ss_pred             HHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhhccC
Q 029446          108 QAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAG  184 (193)
Q Consensus       108 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~  184 (193)
                      ..+..    .+.|+++|+||+|+.+...   .++..+.+.     .. +++++|||++|+|++++|+.+...+..  --|
T Consensus       109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~-----~~-~~~~~~SAktg~gv~~lf~~l~geiv~--l~G  176 (301)
T 1u0l_A          109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS-----GL-YPIVKTSAKTGMGIEELKEYLKGKIST--MAG  176 (301)
T ss_dssp             HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT-----TT-SCEEECCTTTCTTHHHHHHHHSSSEEE--EEC
T ss_pred             HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh-----hh-CcEEEEECCCCcCHHHHHHHhcCCeEE--EEC
Confidence            76643    4789999999999976422   122233322     11 579999999999999999887654422  238


Q ss_pred             CCCCCcCCC
Q 029446          185 YSSVGTSSF  193 (193)
Q Consensus       185 ~~~~~~~~~  193 (193)
                      .+++|||++
T Consensus       177 ~sG~GKSTl  185 (301)
T 1u0l_A          177 LSGVGKSSL  185 (301)
T ss_dssp             STTSSHHHH
T ss_pred             CCCCcHHHH
Confidence            899999864

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.80  E-value=3.4e-18  Score=141.47  Aligned_cols=115  Identities=17%  Similarity=0.078  Sum_probs=86.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC--Ccc------------c-------cccccceeEEEEEEcC-------EEEEE
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG--EVL------------S-------TVPTIGFNVEKVQYKN-------VIFTV   65 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~--~~~------------~-------~~~t~~~~~~~~~~~~-------~~~~i   65 (193)
                      ..+..+|+|+|+.++|||||+++|...  .+.            +       ...|.......+.+..       ..+.+
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            356789999999999999999999742  111            1       1223333344555555       89999


Q ss_pred             EecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           66 WDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        66 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      |||||+.+|...+..+++.+|++|+|+|+++....+... .|.....    .+.|+++|+||+|+...
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANK----YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHH----cCCCEEEEEeCCCcccc
Confidence            999999999999999999999999999999775544443 3333322    47899999999998764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.80  E-value=6e-19  Score=137.41  Aligned_cols=159  Identities=20%  Similarity=0.195  Sum_probs=111.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcC-EEEEEEecCCCCCC-------HHhHHhhhcCCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKN-VIFTVWDVGGQEKL-------RPLWRHYFNNTD   86 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-~~~~i~D~~g~~~~-------~~~~~~~~~~~d   86 (193)
                      ..|+++|++|||||||++.+++....  .+ ..|...+...+.... ..+.+||+||..+.       .......++.++
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            46899999999999999999987532  22 244555566666654 78999999997432       111222346799


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           87 GLIYVVDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      .+++++|++ ...+..+..+..++.... .....|.++++||+|+......+++.+.+     +..+.+++.+||++++|
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~g  311 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAG  311 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTT
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccC
Confidence            999999998 566667666666554421 12357899999999987652122222222     22345799999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 029446          166 LYEGLDWLASTLKEMRA  182 (193)
Q Consensus       166 i~~~~~~l~~~~~~~~~  182 (193)
                      +++++++|.+.+.+...
T Consensus       312 i~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          312 LPALKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999999976543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.78  E-value=4.3e-19  Score=136.74  Aligned_cols=153  Identities=17%  Similarity=0.183  Sum_probs=99.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccc---ccccee-------------E--------------------------
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTV---PTIGFN-------------V--------------------------   53 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~---~t~~~~-------------~--------------------------   53 (193)
                      .-+.|+|+|++|||||||+|++++..+....   .|....             +                          
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            3459999999999999999999997752111   110000             0                          


Q ss_pred             -------------EEEE---EcCEEEEEEecCCCCCC-------------HHhHHhhhcCCCEEEEEEECCChhhH-HHH
Q 029446           54 -------------EKVQ---YKNVIFTVWDVGGQEKL-------------RPLWRHYFNNTDGLIYVVDSLDRERI-GKA  103 (193)
Q Consensus        54 -------------~~~~---~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~  103 (193)
                                   ..+.   .....+.+|||||...+             ......+++++|++++|+|..+.... ...
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~  192 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA  192 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence                         0111   12456899999997776             66778889999999999987543322 222


Q ss_pred             HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHH
Q 029446          104 KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  176 (193)
Q Consensus       104 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  176 (193)
                      ..++..+    ...+.|+|+|+||+|+.+... ..+..+.    .....+.+|++++++++.++++.++.....
T Consensus       193 ~~l~~~~----~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~  258 (360)
T 3t34_A          193 IKISREV----DPSGDRTFGVLTKIDLMDKGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVDMIAAR  258 (360)
T ss_dssp             HHHHHHS----CTTCTTEEEEEECGGGCCTTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred             HHHHHHh----cccCCCEEEEEeCCccCCCcccHHHHHcC----ccccccCCeEEEEECChHHhccCCCHHHHH
Confidence            2222222    225779999999999986532 2222222    123455689999999988887765554433

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.76  E-value=3.4e-18  Score=126.81  Aligned_cols=118  Identities=14%  Similarity=0.089  Sum_probs=79.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccc----cccceeEEEEEEcCEEEEEEecCCCCCCHHhH-------Hhh--
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV----PTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW-------RHY--   81 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~~~--   81 (193)
                      ...++|+++|.+|+|||||+|+|++..+....    .|.......+...+..+.+|||||..++....       ..+  
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            46899999999999999999999988764222    22233344556678999999999987654211       111  


Q ss_pred             hcCCCEEEEEEECCChhhHHHH-HHHHHHHHcCCC-CCCCeEEEEEeCCCCCCC
Q 029446           82 FNNTDGLIYVVDSLDRERIGKA-KQEFQAIIKDPF-MLNSVILVFANKQDMKGA  133 (193)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~  133 (193)
                      .+.+|++++|+|++.. ++... ..++..+..... ....|+++|+||+|+.++
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence            2369999999998653 23332 244444432211 112689999999998764

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.75  E-value=1.6e-18  Score=133.15  Aligned_cols=155  Identities=17%  Similarity=0.151  Sum_probs=95.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-c------ccc----------------------c----------------
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS-T------VPT----------------------I----------------   49 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~------~~t----------------------~----------------   49 (193)
                      ...++|+|+|.+|+|||||+|+|++..+.. .      .|+                      .                
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            356799999999999999999999987631 1      122                      0                


Q ss_pred             -----cee----EEEEEE-cCEEEEEEecCCCC-------------CCHHhHHhhhcCCCEEE-EEEECCChhhHHHHHH
Q 029446           50 -----GFN----VEKVQY-KNVIFTVWDVGGQE-------------KLRPLWRHYFNNTDGLI-YVVDSLDRERIGKAKQ  105 (193)
Q Consensus        50 -----~~~----~~~~~~-~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~  105 (193)
                           ++.    ...+.. ....+.+|||||..             .+......++.+++.++ +++|++....-.....
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                 000    001111 24679999999953             23445666776665554 4666654322122222


Q ss_pred             HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCc-eEEEEeccccCCCHHHHHHHHHH
Q 029446          106 EFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYEGLDWLAS  175 (193)
Q Consensus       106 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~~  175 (193)
                      ++..+ .   ..+.|+|+|+||+|+.+... ..+..+..  ......+ .+++.+||+++.|++++++++.+
T Consensus       189 i~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~--~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLENK--LLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHH-C---TTCTTEEEEEECGGGSCTTCCCHHHHTTC--SSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHh-C---cCCCceEEEeccccccCcchhHHHHHhCC--cccccCCceEEEeCCcccccccccHHHHHHH
Confidence            33333 2   25789999999999986533 22222211  1111223 46899999999999999998876

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.74  E-value=4.5e-18  Score=130.75  Aligned_cols=155  Identities=17%  Similarity=0.142  Sum_probs=98.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC------cc--cccccc---------------------ceeEE----------
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGE------VL--STVPTI---------------------GFNVE----------   54 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~------~~--~~~~t~---------------------~~~~~----------   54 (193)
                      ....+.|+++|.+|+|||||+++|....      ..  ...+..                     +....          
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~  155 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG  155 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence            4567899999999999999999986421      00  000000                     00000          


Q ss_pred             ----------EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446           55 ----------KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF  124 (193)
Q Consensus        55 ----------~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv  124 (193)
                                .+...+..+.+|||||...   ........+|++++|+|+...+.++.+.         ......|.++|
T Consensus       156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivV  223 (355)
T 3p32_A          156 VTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVV  223 (355)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEE
T ss_pred             hhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEE
Confidence                      0012467899999999433   2333458899999999987654432221         11134689999


Q ss_pred             EeCCCCCCCCCHh----HHHhhhCCC--cCCCCceEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446          125 ANKQDMKGAMTPM----EVCEGLGLF--DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       125 ~nK~Dl~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  180 (193)
                      +||+|+.+.....    ++.+.+...  ....++.+++++||++|+|+++++++|.+.+...
T Consensus       224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~  285 (355)
T 3p32_A          224 VNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL  285 (355)
T ss_dssp             EECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             EECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            9999987542222    222222110  0113356799999999999999999999988653

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.72  E-value=1.5e-16  Score=128.31  Aligned_cols=113  Identities=16%  Similarity=0.194  Sum_probs=85.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC------------------Ccccc-------ccccceeEEEEEEcCEEEEEEecCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG------------------EVLST-------VPTIGFNVEKVQYKNVIFTVWDVGG   70 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~------------------~~~~~-------~~t~~~~~~~~~~~~~~~~i~D~~g   70 (193)
                      +.=+|+|+|+.++|||||..+|+..                  ...++       ..|+......+.+++..++|+||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            3448999999999999999999521                  11111       3344555667888999999999999


Q ss_pred             CCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           71 QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      +.+|.......++-+|++++|+|+...-.-+.. ..|.....    .++|.|+++||+|....
T Consensus       110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~----~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRM----RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred             cHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHH----hCCceEEEEecccchhc
Confidence            999999999999999999999999865444443 33444433    57999999999998764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.72  E-value=2.8e-18  Score=129.01  Aligned_cols=161  Identities=16%  Similarity=0.164  Sum_probs=81.0

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcC-Cccccc---------cccceeEEEEEE----cCEEEEEEecCCC-------
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIG-EVLSTV---------PTIGFNVEKVQY----KNVIFTVWDVGGQ-------   71 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~-~~~~~~---------~t~~~~~~~~~~----~~~~~~i~D~~g~-------   71 (193)
                      .....++|+++|++|+|||||++++++. .++...         ++.......+..    ....+.+||++|.       
T Consensus        14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~   93 (301)
T 2qnr_A           14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR   93 (301)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred             EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence            3456799999999999999999998875 333211         222222212211    2568999999998       


Q ss_pred             CCCHHhHH-------hhhcC-------------CCEEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446           72 EKLRPLWR-------HYFNN-------------TDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDM  130 (193)
Q Consensus        72 ~~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl  130 (193)
                      +.++....       .+++.             +++++++.+++. .+++... ..+..+ .    ...|+++|+||+|+
T Consensus        94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-~----~~~~iilV~~K~Dl  167 (301)
T 2qnr_A           94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-H----NKVNIVPVIAKADT  167 (301)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-T----TTSCEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-H----hcCCEEEEEEeCCC
Confidence            55555443       33332             344666665432 1233332 222222 1    35789999999998


Q ss_pred             CCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          131 KGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      ....+... ........++..+++++++||+++ |++++|..+.+.+.+..
T Consensus       168 ~~~~e~~~-~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          168 LTLKERER-LKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             SCHHHHHH-HHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred             CCHHHHHH-HHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            76422111 111111112334568999999999 99999999999886554

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.71  E-value=3.5e-18  Score=132.74  Aligned_cols=80  Identities=25%  Similarity=0.243  Sum_probs=47.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEE---------------------Ec---CEEEEEEecCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQ---------------------YK---NVIFTVWDVGG   70 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~---------------------~~---~~~~~i~D~~g   70 (193)
                      ++|+++|.+|+|||||+|++++....  .+ ..|...+.....                     +.   ..++.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987632  11 123333333211                     11   36899999999


Q ss_pred             CCC----CHHhHH---hhhcCCCEEEEEEECCCh
Q 029446           71 QEK----LRPLWR---HYFNNTDGLIYVVDSLDR   97 (193)
Q Consensus        71 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   97 (193)
                      ...    .+.+..   .+++++|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            754    222222   346889999999999875

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.71  E-value=1.6e-17  Score=134.03  Aligned_cols=121  Identities=22%  Similarity=0.227  Sum_probs=83.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc----ccccccceeEEEEEEc------------------------C------
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL----STVPTIGFNVEKVQYK------------------------N------   60 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~----~~~~t~~~~~~~~~~~------------------------~------   60 (193)
                      ...++|+|+|.+|+|||||+|+|++..+.    ...+++..........                        +      
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            35689999999999999999999998753    1222221110000000                        0      


Q ss_pred             -----------EEEEEEecCCCCC-----------CHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCC
Q 029446           61 -----------VIFTVWDVGGQEK-----------LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN  118 (193)
Q Consensus        61 -----------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  118 (193)
                                 ..+.+|||||...           +......++..+|++++|+|+++....+....++..+..    .+
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~  218 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HE  218 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cC
Confidence                       3689999999765           556677788999999999999875444555555555422    46


Q ss_pred             CeEEEEEeCCCCCCCCCHhHH
Q 029446          119 SVILVFANKQDMKGAMTPMEV  139 (193)
Q Consensus       119 ~p~ivv~nK~Dl~~~~~~~~~  139 (193)
                      .|+++|+||+|+....+..++
T Consensus       219 ~pvilVlNK~Dl~~~~el~~~  239 (550)
T 2qpt_A          219 DKIRVVLNKADMVETQQLMRV  239 (550)
T ss_dssp             GGEEEEEECGGGSCHHHHHHH
T ss_pred             CCEEEEEECCCccCHHHHHHH
Confidence            889999999999875433333

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.71  E-value=9.1e-17  Score=123.07  Aligned_cols=152  Identities=16%  Similarity=0.112  Sum_probs=90.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC------cc--cccccc---------------------ceeEE----------E-
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGE------VL--STVPTI---------------------GFNVE----------K-   55 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~------~~--~~~~t~---------------------~~~~~----------~-   55 (193)
                      ..+.|+++|.+|||||||+|++.+..      ..  ...++.                     .....          . 
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t  152 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT  152 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence            47899999999999999999998621      10  000100                     00000          0 


Q ss_pred             ---------EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 029446           56 ---------VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN  126 (193)
Q Consensus        56 ---------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n  126 (193)
                               +...+..+.++||+|....   .....+.+|++++|+|++.+...+.+..   .+      ...|.++|+|
T Consensus       153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlN  220 (349)
T 2www_A          153 RTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVT  220 (349)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEEC
T ss_pred             HHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEe
Confidence                     0124678999999995322   2334578999999999986543221111   11      2357899999


Q ss_pred             CCCCCCCCC----HhHHHhhhCCCcC--CCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446          127 KQDMKGAMT----PMEVCEGLGLFDL--KNRKWHIQGTCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       127 K~Dl~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                      |+|+.+...    ..++...+.....  ..+..+++.+||++++|+++++++|.+.+..
T Consensus       221 K~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          221 KSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             CCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             eecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            999875321    1123222222111  1224578999999999999999999987643

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.70  E-value=1.4e-17  Score=119.84  Aligned_cols=154  Identities=15%  Similarity=0.137  Sum_probs=94.3

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-------ccccc----------ceeEEEE------------------E
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-------TVPTI----------GFNVEKV------------------Q   57 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-------~~~t~----------~~~~~~~------------------~   57 (193)
                      ...+..+|+++|.+|+|||||+++|.......       ..+..          +.....+                  .
T Consensus        26 ~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (221)
T 2wsm_A           26 RESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKK  105 (221)
T ss_dssp             HHHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred             cccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHh
Confidence            33467899999999999999999998652110       01100          1111111                  1


Q ss_pred             EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CC
Q 029446           58 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MT  135 (193)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~  135 (193)
                      .....+.+|||+|+.....   .+....+.+++|+|+++...  ....+ ...      .+.|.++|+||+|+.+.  ..
T Consensus       106 ~~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~-~~~------~~~~~iiv~NK~Dl~~~~~~~  173 (221)
T 2wsm_A          106 FSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKH-PEI------FRVADLIVINKVALAEAVGAD  173 (221)
T ss_dssp             GTTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHC-HHH------HHTCSEEEEECGGGHHHHTCC
T ss_pred             cCCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhh-hhh------hhcCCEEEEecccCCcchhhH
Confidence            1346789999999521111   11125788999999976432  11111 111      24678999999998643  23


Q ss_pred             HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          136 PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      .+++.+.+...   ....+++++||++|+|+++++++|.+.+....
T Consensus       174 ~~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          174 VEKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            44443333210   22458999999999999999999999886544

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.70  E-value=6.8e-17  Score=136.08  Aligned_cols=121  Identities=17%  Similarity=0.121  Sum_probs=90.1

Q ss_pred             HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC------------ccc-------cccccceeEEEEEEc------
Q 029446            5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE------------VLS-------TVPTIGFNVEKVQYK------   59 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~------------~~~-------~~~t~~~~~~~~~~~------   59 (193)
                      ++++++  ...+..+|+|+|+.++|||||+++|+...            +.+       ...|+......+.+.      
T Consensus         9 ~~~~m~--~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~   86 (842)
T 1n0u_A            9 MRSLMD--KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDV   86 (842)
T ss_dssp             HHHHHH--CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHH
T ss_pred             HHHHhh--CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccc
Confidence            344444  23467899999999999999999998641            111       122444444444443      


Q ss_pred             ----------CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 029446           60 ----------NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD  129 (193)
Q Consensus        60 ----------~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  129 (193)
                                ...+.+|||||+.+|...+..+++.+|++++|+|+++..+++....|. ....    .+.|+|+|+||+|
T Consensus        87 ~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D  161 (842)
T 1n0u_A           87 KEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVD  161 (842)
T ss_dssp             HHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHH
T ss_pred             ccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCC
Confidence                      688999999999999999999999999999999999887777764443 3333    4689999999999


Q ss_pred             CCC
Q 029446          130 MKG  132 (193)
Q Consensus       130 l~~  132 (193)
                      +..
T Consensus       162 ~~~  164 (842)
T 1n0u_A          162 RAL  164 (842)
T ss_dssp             HHH
T ss_pred             cch
Confidence            873

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.69  E-value=5.7e-17  Score=113.57  Aligned_cols=176  Identities=22%  Similarity=0.293  Sum_probs=115.3

Q ss_pred             hHHHHhhhhcCCCccEEEEEcCCC-CCHHHHHHHHhcCC-ccc-------c--ccccceeEE-----EEEE---------
Q 029446            4 AFRKLFDVFFGNSEMRVVMLGLDA-AGKTTILYKLHIGE-VLS-------T--VPTIGFNVE-----KVQY---------   58 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~v~G~~~-~GKssli~~l~~~~-~~~-------~--~~t~~~~~~-----~~~~---------   58 (193)
                      .+.+|+.+.-....++++++|+.= .=..+|+.++.... ...       .  +-..|+.+.     .++.         
T Consensus         3 ~~~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~   82 (227)
T 3l82_B            3 AVTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRK   82 (227)
T ss_dssp             -CCCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC---
T ss_pred             hHHHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHH
Confidence            445566777778999999999852 33668888887654 111       0  111122211     1111         


Q ss_pred             c-----------CEEEEEEec------CCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHH---HHHHcCCC-CC
Q 029446           59 K-----------NVIFTVWDV------GGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEF---QAIIKDPF-ML  117 (193)
Q Consensus        59 ~-----------~~~~~i~D~------~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~  117 (193)
                      .           --++-....      +||...+..|+.|++++|++|||+|++|.+.++ ....+   ..++.... ..
T Consensus        83 er~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~  161 (227)
T 3l82_B           83 ERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSS  161 (227)
T ss_dssp             ----------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCS
T ss_pred             HhhhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhC
Confidence            0           012333334      389999999999999999999999999876554 33333   33344332 36


Q ss_pred             CCeEEEEEeCC-CCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          118 NSVILVFANKQ-DMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       118 ~~p~ivv~nK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      +.|++|++||. |+.......++.+.+++... .+.+.+..|||++|+|+.+.++||.+.+..++
T Consensus       162 gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          162 GRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             CSCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             CCeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            89999999995 78888889999999998776 47899999999999999999999998886544

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.67  E-value=3.5e-17  Score=127.58  Aligned_cols=159  Identities=14%  Similarity=0.169  Sum_probs=75.2

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc---------ccccceeEEEE--EE--cCEEEEEEecCCCCCCH----
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST---------VPTIGFNVEKV--QY--KNVIFTVWDVGGQEKLR----   75 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---------~~t~~~~~~~~--~~--~~~~~~i~D~~g~~~~~----   75 (193)
                      ...-.++|+|+|++|+|||||+|.|++..+...         .+|.+.....+  +.  ....+++||++|.....    
T Consensus        27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~  106 (418)
T 2qag_C           27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN  106 (418)
T ss_dssp             C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred             ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence            345678999999999999999999998765311         12222221111  11  23579999999976531    


Q ss_pred             ---Hh------------------HHhhhcCCC--EEEEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           76 ---PL------------------WRHYFNNTD--GLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        76 ---~~------------------~~~~~~~~d--~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                         ..                  .+.++.+++  +++|+.+++ ..+++... .++..+ .    .+.|+|+|+||+|+.
T Consensus       107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt-~~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll  180 (418)
T 2qag_C          107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS-GHGLKPLDIEFMKRL-H----EKVNIIPLIAKADTL  180 (418)
T ss_dssp             -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC--CCSCCHHHHHHHHHH-T----TTSEEEEEEESTTSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCc-ccCCCHHHHHHHHHH-h----ccCcEEEEEEcccCc
Confidence               11                  122334444  445554443 12344443 445444 2    368999999999987


Q ss_pred             CCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          132 GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      .........+ .....+...+++++++|++++.++++++..+...++
T Consensus       181 ~~~ev~~~k~-~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          181 TPEECQQFKK-QIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             CHHHHHHHHH-HHHHHHHHHTCCCCCCC-----------------CC
T ss_pred             cHHHHHHHHH-HHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence            6422211111 111112234567999999999999998888877654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.66  E-value=4.8e-15  Score=113.86  Aligned_cols=113  Identities=16%  Similarity=0.107  Sum_probs=77.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcCEEEEEEecCCCCCC-------HHhHHhhhcCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKNVIFTVWDVGGQEKL-------RPLWRHYFNNT   85 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~   85 (193)
                      ...+|+++|.||+|||||+|+|++....  .+ ..|.......+.+.+.+++++||||-...       .......++.|
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a  150 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC  150 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence            3468999999999999999999987643  23 46778888889999999999999993221       11233455789


Q ss_pred             CEEEEEEECCChhhH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446           86 DGLIYVVDSLDRERI-GKAKQEFQAIIKDPFMLNSVILVFANKQDM  130 (193)
Q Consensus        86 d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  130 (193)
                      |++++|+|++++..- +.+...+....  ......|.+++.||.|.
T Consensus       151 d~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          151 NLLFIILDVNKPLHHKQIIEKELEGVG--IRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             SEEEEEEETTSHHHHHHHHHHHHHHTT--EEETCCCCCEEEEECSS
T ss_pred             CccccccccCccHHHHHHHHHHHHHhh--HhhccCChhhhhhHhhh
Confidence            999999999986322 22222222211  11234566677777764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.65  E-value=4.1e-15  Score=113.66  Aligned_cols=79  Identities=22%  Similarity=0.265  Sum_probs=58.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEcC-----------------EEEEEEecCCCCCCHH-
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYKN-----------------VIFTVWDVGGQEKLRP-   76 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-----------------~~~~i~D~~g~~~~~~-   76 (193)
                      ++|+++|.+|+|||||+|++++..+.  .+ .+|.+.+...+.+.+                 ..+.+|||||..++.. 
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999987742  12 235555555555432                 6899999999887642 


Q ss_pred             ---h---HHhhhcCCCEEEEEEECCC
Q 029446           77 ---L---WRHYFNNTDGLIYVVDSLD   96 (193)
Q Consensus        77 ---~---~~~~~~~~d~~i~v~d~~~   96 (193)
                         +   ...+++++|++++|+|+++
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCC
Confidence               1   2335689999999999985

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.64  E-value=2.2e-15  Score=124.46  Aligned_cols=156  Identities=17%  Similarity=0.124  Sum_probs=98.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc--c-cccce-----------------------------------------
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST--V-PTIGF-----------------------------------------   51 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~--~-~t~~~-----------------------------------------   51 (193)
                      ..++|+|+|.+++|||||+|++++..+...  . .|...                                         
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            558999999999999999999999765211  1 11100                                         


Q ss_pred             ------e----EEEEEE-cCEEEEEEecCCCCC-------------CHHhHHhhh-cCCCEEEEEEECCChhhHHHHHHH
Q 029446           52 ------N----VEKVQY-KNVIFTVWDVGGQEK-------------LRPLWRHYF-NNTDGLIYVVDSLDRERIGKAKQE  106 (193)
Q Consensus        52 ------~----~~~~~~-~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~  106 (193)
                            .    ...+.. ...++.++||||-..             .......++ +.+|++++|+|++....-+.....
T Consensus       130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l  209 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  209 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred             CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence                  0    001111 234688999999433             222334444 478999999999865332232223


Q ss_pred             HHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHH
Q 029446          107 FQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  176 (193)
Q Consensus       107 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  176 (193)
                      +..+ ..   .+.|+|+|+||+|+.+.... ..+.+. .....+....+++.+||++|.|++++.+.+.+.
T Consensus       210 l~~L-~~---~g~pvIlVlNKiDlv~~~~~~~~il~~-~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          210 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHH-CT---TCSSEEEEEECTTSSCTTCCSHHHHTT-CSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHH-Hh---cCCCEEEEEeCcccCCcchhhHHHHHH-HhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            3333 22   47899999999999875332 222221 111112223578999999999999999998863

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.64  E-value=1.1e-16  Score=122.25  Aligned_cols=153  Identities=14%  Similarity=0.122  Sum_probs=92.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC------Ccc--cccc--cc-------------------ceeEEE---------
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG------EVL--STVP--TI-------------------GFNVEK---------   55 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~------~~~--~~~~--t~-------------------~~~~~~---------   55 (193)
                      ......|+++|.+|+|||||++.+.+.      ...  ...+  +.                   ......         
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g  132 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG  132 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence            456788999999999999999999632      110  0000  00                   000000         


Q ss_pred             -----------EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446           56 -----------VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF  124 (193)
Q Consensus        56 -----------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv  124 (193)
                                 ....+..+.+|||||.......   ....+|++++|+|++....++.+..   ..      .+.|.++|
T Consensus       133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv  200 (341)
T 2p67_A          133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIV  200 (341)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEE
T ss_pred             hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEE
Confidence                       0123678999999997654432   4588999999999975432211100   00      14578999


Q ss_pred             EeCCCCCCCCCHh----HHHhhhCCCc--CCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          125 ANKQDMKGAMTPM----EVCEGLGLFD--LKNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       125 ~nK~Dl~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      +||+|+.+.....    ++.+.+....  ...+..+++++||++|+|+++++++|.+.+.
T Consensus       201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            9999987642222    2222111110  1123457999999999999999999998775

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.63  E-value=2.4e-16  Score=116.16  Aligned_cols=162  Identities=15%  Similarity=0.058  Sum_probs=95.0

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHh-----cCCcc--ccccc---c----ce------eEEEE----------------
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLH-----IGEVL--STVPT---I----GF------NVEKV----------------   56 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~-----~~~~~--~~~~t---~----~~------~~~~~----------------   56 (193)
                      ...+...+++.|.+|+||||+++.+.     +....  +..+.   .    +.      +....                
T Consensus        10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (262)
T 1yrb_A           10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYD   89 (262)
T ss_dssp             TTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHH
T ss_pred             CCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHH
Confidence            44577889999999999999999997     43321  11110   0    00      00000                


Q ss_pred             --------------E-EcCEEEEEEecCCCCCCHHhHH------hhhcCCCEEEEEEECCChhhHHHHHH---HHHHHHc
Q 029446           57 --------------Q-YKNVIFTVWDVGGQEKLRPLWR------HYFNNTDGLIYVVDSLDRERIGKAKQ---EFQAIIK  112 (193)
Q Consensus        57 --------------~-~~~~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~  112 (193)
                                    . .....+.+|||||+........      ..+.. +++++++|+....+......   .......
T Consensus        90 ~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  168 (262)
T 1yrb_A           90 RLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL  168 (262)
T ss_dssp             HHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc
Confidence                          0 0135799999999876543221      24466 89999998854322222221   1111111


Q ss_pred             CCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-C----c------------------CC--CCceEEEEeccccCCCHH
Q 029446          113 DPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL-F----D------------------LK--NRKWHIQGTCALKGDGLY  167 (193)
Q Consensus       113 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~----~------------------~~--~~~~~~~~~Sa~~~~gi~  167 (193)
                      .   .+.|+++|+||+|+......+++.+.+.. .    .                  ++  ....+++++||++++|++
T Consensus       169 ~---~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~  245 (262)
T 1yrb_A          169 R---LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE  245 (262)
T ss_dssp             H---HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHH
T ss_pred             c---cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHH
Confidence            1   35789999999998764222111111100 0    0                  00  122368999999999999


Q ss_pred             HHHHHHHHHHH
Q 029446          168 EGLDWLASTLK  178 (193)
Q Consensus       168 ~~~~~l~~~~~  178 (193)
                      +++++|.+.+.
T Consensus       246 ~l~~~i~~~~~  256 (262)
T 1yrb_A          246 DLETLAYEHYC  256 (262)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999998774

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.61  E-value=6.3e-16  Score=126.82  Aligned_cols=158  Identities=19%  Similarity=0.203  Sum_probs=111.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc--CCc------------ccc-------ccccceeEEEEEEcCEEEEEEecCCCCCCHHh
Q 029446           19 RVVMLGLDAAGKTTILYKLHI--GEV------------LST-------VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL   77 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~--~~~------------~~~-------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (193)
                      ||+|+|+.++|||||..+|..  +..            .++       ..|+......+.+++..++++||||+.+|...
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E   83 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE   83 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence            789999999999999999963  111            111       22444445567778899999999999999999


Q ss_pred             HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCcC------
Q 029446           78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDL------  148 (193)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~------  148 (193)
                      ....++-+|++++|+|+...-.-+.. ..|.....    .++|.|+++||+|....+..   +++.+.++....      
T Consensus        84 v~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~  158 (638)
T 3j25_A           84 VYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE  158 (638)
T ss_dssp             HHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred             HHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence            99999999999999999865332332 33444433    46889999999998765322   223332221100      


Q ss_pred             --------------------------------------------------CCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          149 --------------------------------------------------KNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       149 --------------------------------------------------~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                                                                        ...-.|++..||.++.|++.+++.+.+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p  238 (638)
T 3j25_A          159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFY  238 (638)
T ss_dssp             SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred             eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcccc
Confidence                                                              011257888999999999999999998776


Q ss_pred             hhh
Q 029446          179 EMR  181 (193)
Q Consensus       179 ~~~  181 (193)
                      .-.
T Consensus       239 ~p~  241 (638)
T 3j25_A          239 SST  241 (638)
T ss_dssp             CSG
T ss_pred             Ccc
Confidence            443

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.60  E-value=1.1e-15  Score=112.11  Aligned_cols=112  Identities=25%  Similarity=0.380  Sum_probs=88.1

Q ss_pred             cCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHH---HHHcCCC-CCCCeEEEEEeC-CCCCCCCCHhHHHhh
Q 029446           68 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ---AIIKDPF-MLNSVILVFANK-QDMKGAMTPMEVCEG  142 (193)
Q Consensus        68 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~p~ivv~nK-~Dl~~~~~~~~~~~~  142 (193)
                      .+||+..+..|+.|++++|++|||+|++|.+.++ ....+.   .++.... ..+.|++|++|| -|+.......++.+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4689999999999999999999999999887654 222222   3332211 368899999997 589888889999999


Q ss_pred             hCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          143 LGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       143 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      +++... .+.+.+..|||.+|+|+.+.++||.+.+..++
T Consensus       273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            998776 47889999999999999999999999886544

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.58  E-value=5.2e-14  Score=116.88  Aligned_cols=111  Identities=20%  Similarity=0.126  Sum_probs=78.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC--------C------cccc-------ccccceeEEEEEE-------cCEEEEEEecC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG--------E------VLST-------VPTIGFNVEKVQY-------KNVIFTVWDVG   69 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~--------~------~~~~-------~~t~~~~~~~~~~-------~~~~~~i~D~~   69 (193)
                      =+|+|+|+.++|||||..+|...        .      +.++       ..|+......+.+       ++..++++|||
T Consensus        14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP   93 (709)
T 4fn5_A           14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP   93 (709)
T ss_dssp             EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence            38999999999999999998631        1      1111       1222233334444       25899999999


Q ss_pred             CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      ||.+|.......++-+|++++|+|+...-.-+.. ..|.....    .+.|.|+++||+|....
T Consensus        94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~----~~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANK----YGVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----HTCCEEEEEECSSSTTC
T ss_pred             CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHH----cCCCeEEEEccccccCc
Confidence            9999999999999999999999999765433333 33444433    47899999999998654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.57  E-value=4.3e-14  Score=108.57  Aligned_cols=79  Identities=22%  Similarity=0.243  Sum_probs=56.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEE---------------------cCEEEEEEecCCCCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQY---------------------KNVIFTVWDVGGQEK   73 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~---------------------~~~~~~i~D~~g~~~   73 (193)
                      ++|+++|.+|+|||||+|++++....  .+ ..|...+......                     .+..+.+||+||..+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            68999999999999999999976421  11 2344444433322                     246799999999765


Q ss_pred             CH-------HhHHhhhcCCCEEEEEEECCC
Q 029446           74 LR-------PLWRHYFNNTDGLIYVVDSLD   96 (193)
Q Consensus        74 ~~-------~~~~~~~~~~d~~i~v~d~~~   96 (193)
                      ..       ......++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            42       223445789999999999975

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.56  E-value=8e-17  Score=116.18  Aligned_cols=151  Identities=15%  Similarity=0.130  Sum_probs=84.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccee----------------EEEEEEc-----------------
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFN----------------VEKVQYK-----------------   59 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~----------------~~~~~~~-----------------   59 (193)
                      ..+.++|+++|.+|+|||||+++|....+.. +.++++.+                ...+...                 
T Consensus        35 ~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l  114 (226)
T 2hf9_A           35 KHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDL  114 (226)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred             hCCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHH
Confidence            3467999999999999999999998764432 22222211                1111100                 


Q ss_pred             ---CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--C
Q 029446           60 ---NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--M  134 (193)
Q Consensus        60 ---~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~  134 (193)
                         ...+.+.|++|.-....   .+-...+..+.++|+........   .....      ...|.++|+||+|+.+.  .
T Consensus       115 ~~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~---~~~~~------~~~~~iiv~NK~Dl~~~~~~  182 (226)
T 2hf9_A          115 NLDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE---KHPGI------MKTADLIVINKIDLADAVGA  182 (226)
T ss_dssp             CGGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT---TCHHH------HTTCSEEEEECGGGHHHHTC
T ss_pred             hcCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh---hhhhH------hhcCCEEEEeccccCchhHH
Confidence               11455666665321111   11112344556666422111000   00011      13567999999998653  2


Q ss_pred             CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHh
Q 029446          135 TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                      ..++..+.+..   ...+.+++++||++|+|+++++++|.+.+..
T Consensus       183 ~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          183 DIKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             CHHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            33333332211   0224589999999999999999999988754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.56  E-value=4.7e-16  Score=116.92  Aligned_cols=112  Identities=21%  Similarity=0.167  Sum_probs=84.9

Q ss_pred             CCCCHHhHHhhhcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCC
Q 029446           71 QEKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLF  146 (193)
Q Consensus        71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~  146 (193)
                      ++++..+.+.++.++|++++|+|++++. ++..+..|+..+..    .++|+++|+||+|+.+...   .++..+..   
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~---  138 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIY---  138 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH---
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHH---
Confidence            7788888888999999999999999886 88888888876543    5799999999999976421   11222211   


Q ss_pred             cCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446          147 DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  193 (193)
Q Consensus       147 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~  193 (193)
                        +..+++++++||++++|++++++.+...+.  .--|.+++|||+|
T Consensus       139 --~~~g~~~~~~SA~~g~gi~~L~~~l~G~i~--~l~G~sG~GKSTL  181 (302)
T 2yv5_A          139 --RDAGYDVLKVSAKTGEGIDELVDYLEGFIC--ILAGPSGVGKSSI  181 (302)
T ss_dssp             --HHTTCEEEECCTTTCTTHHHHHHHTTTCEE--EEECSTTSSHHHH
T ss_pred             --HHCCCeEEEEECCCCCCHHHHHhhccCcEE--EEECCCCCCHHHH
Confidence              223568999999999999999988765432  2348999999864

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.50  E-value=1.1e-13  Score=105.43  Aligned_cols=153  Identities=16%  Similarity=0.106  Sum_probs=91.4

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc------CCcc--cccc--cc------------c-----eeEEE-----------
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHI------GEVL--STVP--TI------------G-----FNVEK-----------   55 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~------~~~~--~~~~--t~------------~-----~~~~~-----------   55 (193)
                      ......++++|++|||||||++.+.+      +...  ...+  +.            +     .....           
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G  131 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG  131 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence            35667899999999999999999973      2221  0000  00            0     00000           


Q ss_pred             -----------EEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446           56 -----------VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF  124 (193)
Q Consensus        56 -----------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv  124 (193)
                                 +...+.++.++||||...-..   .....+|.+++++|+......+.+.....         ..|.+++
T Consensus       132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i~---------~~~~ivv  199 (337)
T 2qm8_A          132 VAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIF---------ELADMIA  199 (337)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHH---------HHCSEEE
T ss_pred             hHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHHh---------ccccEEE
Confidence                       112477899999999654332   23478999999999864432211111111         2345788


Q ss_pred             EeCCCCCCCCC-----HhHHHhhhCCCcC--CCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          125 ANKQDMKGAMT-----PMEVCEGLGLFDL--KNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       125 ~nK~Dl~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      +||+|+.....     .+++...+.....  ..+..+++.+||+++.|++++++.|.+...
T Consensus       200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            89999764321     1223332322110  012346888999999999999999988765

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.34  E-value=2.5e-12  Score=99.31  Aligned_cols=83  Identities=19%  Similarity=0.296  Sum_probs=52.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-c--cccccceeEEEEEEc-----------------CEEEEEEecCCCCCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-S--TVPTIGFNVEKVQYK-----------------NVIFTVWDVGGQEKL   74 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~--~~~t~~~~~~~~~~~-----------------~~~~~i~D~~g~~~~   74 (193)
                      ...++|+++|.+|+|||||+|++++.... .  ...|...+...+...                 +..+.+||+||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            35689999999999999999999987653 1  134555555555432                 346999999997765


Q ss_pred             HH-------hHHhhhcCCCEEEEEEECCCh
Q 029446           75 RP-------LWRHYFNNTDGLIYVVDSLDR   97 (193)
Q Consensus        75 ~~-------~~~~~~~~~d~~i~v~d~~~~   97 (193)
                      ..       .+..+++++|++++|+|+++.
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            43       456677999999999999753

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.34  E-value=2e-13  Score=105.24  Aligned_cols=116  Identities=18%  Similarity=0.180  Sum_probs=78.9

Q ss_pred             CCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcC
Q 029446           70 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDL  148 (193)
Q Consensus        70 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~  148 (193)
                      .+++|++.+..+.+.++++++|+|++++.     ..|...+.+.  ..+.|+++|+||+|+.+... .+++.+.+. ..+
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~-~~~  126 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMR-YSA  126 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHH-HHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHH-HHH
Confidence            46789999999999999999999998753     1232222221  13789999999999976532 222211110 001


Q ss_pred             CCCce---EEEEeccccCCCHHHHHHHHHHHHHhhh--ccCCCCCCcCCC
Q 029446          149 KNRKW---HIQGTCALKGDGLYEGLDWLASTLKEMR--AAGYSSVGTSSF  193 (193)
Q Consensus       149 ~~~~~---~~~~~Sa~~~~gi~~~~~~l~~~~~~~~--~~~~~~~~~~~~  193 (193)
                      +..++   +++.+||++|+|++++++.+.+......  --|.+++|||+|
T Consensus       127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKStl  176 (368)
T 3h2y_A          127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKSTF  176 (368)
T ss_dssp             HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHHH
T ss_pred             HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcccceEEEecCCCCChhHH
Confidence            12223   7899999999999999999987664332  238899999874

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.32  E-value=3.5e-13  Score=103.90  Aligned_cols=117  Identities=15%  Similarity=0.134  Sum_probs=79.4

Q ss_pred             CCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCc
Q 029446           69 GGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFD  147 (193)
Q Consensus        69 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~  147 (193)
                      ..+++|++.+..+++.++++++|+|++++.+  .....+...+     .+.|+++|+||+|+.+... .+++.+.+. ..
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~-~~  127 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMR-RM  127 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHH-HH
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHH-HH
Confidence            3588899999999999999999999998763  1111122221     3789999999999987532 222221110 00


Q ss_pred             CCCCce---EEEEeccccCCCHHHHHHHHHHHHHhhh--ccCCCCCCcCCC
Q 029446          148 LKNRKW---HIQGTCALKGDGLYEGLDWLASTLKEMR--AAGYSSVGTSSF  193 (193)
Q Consensus       148 ~~~~~~---~~~~~Sa~~~~gi~~~~~~l~~~~~~~~--~~~~~~~~~~~~  193 (193)
                      ++..+.   +++.+||++|+|++++++.+.+......  --|.+++|||||
T Consensus       128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKStl  178 (369)
T 3ec1_A          128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTF  178 (369)
T ss_dssp             HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHHH
T ss_pred             HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHHH
Confidence            122232   6899999999999999999988764432  239999999874

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.29  E-value=1.3e-12  Score=97.15  Aligned_cols=117  Identities=20%  Similarity=0.155  Sum_probs=78.8

Q ss_pred             EEecCCCC-CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 029446           65 VWDVGGQE-KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL  143 (193)
Q Consensus        65 i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  143 (193)
                      |-..||+. .........+.++|+++.|+|+.++.+...  ..+..++     .++|.++|+||+|+.+....+.+.+.+
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~   75 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF   75 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence            44567866 455566777899999999999998876542  1222332     468999999999998742222333332


Q ss_pred             CCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh----------------ccCCCCCCcCCC
Q 029446          144 GLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR----------------AAGYSSVGTSSF  193 (193)
Q Consensus       144 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~----------------~~~~~~~~~~~~  193 (193)
                           +..+++++.+||+++.|++++++.+.+.+.+..                --|.+++|||||
T Consensus        76 -----~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsl  136 (282)
T 1puj_A           76 -----ENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTL  136 (282)
T ss_dssp             -----HTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHH
T ss_pred             -----HhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHH
Confidence                 123457899999999999999998888776331                128899999874

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.09  E-value=6.6e-10  Score=85.95  Aligned_cols=81  Identities=21%  Similarity=0.344  Sum_probs=59.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCc-c-cc--ccccceeEEEEEEcC-----------------EEEEEEecCCCC--
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEV-L-ST--VPTIGFNVEKVQYKN-----------------VIFTVWDVGGQE--   72 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~-~-~~--~~t~~~~~~~~~~~~-----------------~~~~i~D~~g~~--   72 (193)
                      ...+++++|.+|||||||+|.+++... . ..  ..|...+...+...+                 ..+.+||+||..  
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            467999999999999999999999664 2 22  235555555555543                 578999999932  


Q ss_pred             -----CCHHhHHhhhcCCCEEEEEEECCC
Q 029446           73 -----KLRPLWRHYFNNTDGLIYVVDSLD   96 (193)
Q Consensus        73 -----~~~~~~~~~~~~~d~~i~v~d~~~   96 (193)
                           .+.......++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                 233345566789999999999864

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.08  E-value=1.3e-09  Score=86.80  Aligned_cols=153  Identities=17%  Similarity=0.114  Sum_probs=88.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh------cCCcc----cc-ccc-----------cceeEEE-----------------E
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLH------IGEVL----ST-VPT-----------IGFNVEK-----------------V   56 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~------~~~~~----~~-~~t-----------~~~~~~~-----------------~   56 (193)
                      ....|+++|.+|+||||++++|.      +....    +. .+.           .++.+..                 .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998      43321    00 000           0111111                 0


Q ss_pred             EEcCEEEEEEecCCCCCCHH-hHHh---h--hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCC
Q 029446           57 QYKNVIFTVWDVGGQEKLRP-LWRH---Y--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQD  129 (193)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D  129 (193)
                      ......+.++||||...... ....   .  ...+|.+++|+|+.......+.   ...+..     ..|+ ++|+||.|
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~-----~~~i~gvVlNK~D  251 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD-----KVDVASVIVTKLD  251 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH-----HHCCCCEEEECTT
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh-----hcCceEEEEeCCc
Confidence            11567899999999764321 1111   1  1279999999999865432222   222211     1454 79999999


Q ss_pred             CCCCCCH-hHHHhhhCCCc-----CCC-C----ceEEEEeccccCCC-HHHHHHHHHHH
Q 029446          130 MKGAMTP-MEVCEGLGLFD-----LKN-R----KWHIQGTCALKGDG-LYEGLDWLAST  176 (193)
Q Consensus       130 l~~~~~~-~~~~~~~~~~~-----~~~-~----~~~~~~~Sa~~~~g-i~~~~~~l~~~  176 (193)
                      ....... ..+...++.+.     -+. .    ..+.+.+|+..|.| +.++++++.+.
T Consensus       252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            8755332 23334443221     000 0    01234589999999 99999988766

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.97  E-value=5.7e-11  Score=91.58  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=65.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC-----Ccc--ccccccceeEEEEEEcCEEEEEEecCCCCCCH--------HhHHhh
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIG-----EVL--STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLR--------PLWRHY   81 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~-----~~~--~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~   81 (193)
                      ..+++++|.+|+|||||+|++.+.     ...  ...|.+......+... ..+.++||||-....        .....+
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~  240 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKII  240 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence            358999999999999999999986     222  1122222222233322 238999999943211        111222


Q ss_pred             h--cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           82 F--NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        82 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      +  +..+.+++++++.....+..+..  .+.+.   ..+.|+++++||.|..+.
T Consensus       241 ~~~~~i~~~~~~l~~~~~~~~g~l~~--l~~l~---~~~~~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          241 TPKREIHPRVYQLNEGQTLFFGGLAR--LDYIK---GGRRSFVCYMANELTVHR  289 (369)
T ss_dssp             SCSSCCCCEEEEECTTEEEEETTTEE--EEEEE---SSSEEEEEEECTTSCEEE
T ss_pred             hcccccCceEEEEcCCceEEECCEEE--EEEcc---CCCceEEEEecCCccccc
Confidence            2  56899999999843211111100  11112   246899999999998764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.96  E-value=1.3e-09  Score=84.98  Aligned_cols=141  Identities=12%  Similarity=0.101  Sum_probs=72.1

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc---ccccceeEEE----EEEcC--EEEEEEecCCCCCC---------
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST---VPTIGFNVEK----VQYKN--VIFTVWDVGGQEKL---------   74 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~~~~~~~----~~~~~--~~~~i~D~~g~~~~---------   74 (193)
                      .....++++|+|++|+|||||+|.+.+..+...   ..+.+.....    .+...  ..+.++|++|-...         
T Consensus        38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~  117 (427)
T 2qag_B           38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKP  117 (427)
T ss_dssp             C-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHH
T ss_pred             cCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhH
Confidence            334456799999999999999999998653211   1111111111    12122  37899999985432         


Q ss_pred             -----HHhHHhhh-------------cC--CCE-EEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           75 -----RPLWRHYF-------------NN--TDG-LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        75 -----~~~~~~~~-------------~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                           ...+..++             ..  +|+ ++++.|+...-+  .....+...+.    .+.|+|+|.||+|....
T Consensus       118 i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~--~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          118 IVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK--SLDLVTMKKLD----SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C--HHHHHHHHHTC----SCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC--HHHHHHHHHHh----hCCCEEEEEcchhccch
Confidence                 11111111             11  233 555666653322  22222333332    47899999999998865


Q ss_pred             CCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446          134 MTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      .+...+.+.... .++..+++++.+|.
T Consensus       192 ~E~~~l~~~I~~-~L~~~gi~I~~is~  217 (427)
T 2qag_B          192 SELTKFKIKITS-ELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHHHH-HHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHHH-HHHHcCCcEEecCC
Confidence            433333222211 12345666666664

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.93  E-value=2.9e-11  Score=88.97  Aligned_cols=111  Identities=13%  Similarity=0.050  Sum_probs=71.7

Q ss_pred             cCCCC-CCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC
Q 029446           68 VGGQE-KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF  146 (193)
Q Consensus        68 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  146 (193)
                      .||+. +........+.++|+++.|+|+.++.+.....  +. +     . ++|.++|+||+|+.+....+++.+.+.  
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~--   72 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK--   72 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence            35654 34445666679999999999998876543210  11 1     1 789999999999987532233333221  


Q ss_pred             cCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446          147 DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  193 (193)
Q Consensus       147 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~  193 (193)
                         ..+.++ .+||+++.|++++++.+.+.+..-.--|.+++|||||
T Consensus        73 ---~~g~~v-~iSa~~~~gi~~L~~~l~~~~~~v~~vG~~~vGKSsl  115 (262)
T 3cnl_A           73 ---KQGKRV-ITTHKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTI  115 (262)
T ss_dssp             ---HTTCCE-EECCTTSCHHHHHHHHCCCTTCEEEEEESTTSSHHHH
T ss_pred             ---HcCCeE-EEECCCCcCHHHHHHHHHHhhhheEEeCCCCCCHHHH
Confidence               223467 9999999999998887765531223348899999874

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.93  E-value=1.2e-09  Score=80.75  Aligned_cols=114  Identities=16%  Similarity=0.218  Sum_probs=62.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccc----------cccceeEEEE--EE--cCEEEEEEecCCCCC-------CH
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLSTV----------PTIGFNVEKV--QY--KNVIFTVWDVGGQEK-------LR   75 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~~~----------~t~~~~~~~~--~~--~~~~~~i~D~~g~~~-------~~   75 (193)
                      .|+++++|+.|+|||||+|.+++-..+..+          .+.......+  +.  -...+.++|++|-..       ..
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            478999999999999999999974332110          1111111111  11  124789999998321       11


Q ss_pred             HhH-----------H----------hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 029446           76 PLW-----------R----------HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM  134 (193)
Q Consensus        76 ~~~-----------~----------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  134 (193)
                      ...           .          ..+..+++.++++|... ..++.....+...+..   . .++|+|++|.|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~---~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK---V-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT---T-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh---c-CcEEEEEeccccCCHH
Confidence            100           0          01123688999999642 1122222222233332   2 8899999999988753


Q ss_pred             C
Q 029446          135 T  135 (193)
Q Consensus       135 ~  135 (193)
                      +
T Consensus       157 e  157 (270)
T 3sop_A          157 E  157 (270)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.87  E-value=1.4e-08  Score=78.99  Aligned_cols=159  Identities=15%  Similarity=0.069  Sum_probs=85.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccc-ccc-ce----eEEEEEEcC-EEEEEEecCCCCC----CHHh-HHhhhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTI-GF----NVEKVQYKN-VIFTVWDVGGQEK----LRPL-WRHYFN   83 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~-~t~-~~----~~~~~~~~~-~~~~i~D~~g~~~----~~~~-~~~~~~   83 (193)
                      ....++++|++|||||||+|.+.+-..+..+ .+. +.    .....+... -.+.+||++|...    .... ....+.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            5568999999999999999999984332110 000 00    011112222 2588999998421    1111 122234


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC---------CCCCHhHHHhhhCCCc-----CC
Q 029446           84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK---------GAMTPMEVCEGLGLFD-----LK  149 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~---------~~~~~~~~~~~~~~~~-----~~  149 (193)
                      ..+..++ ++...... +. ......+..    .+.|+++|.||.|+.         +.....++.+.+....     ..
T Consensus       148 ~~~~~~~-lS~G~~~k-qr-v~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~  220 (413)
T 1tq4_A          148 EYDFFII-ISATRFKK-ND-IDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  220 (413)
T ss_dssp             GCSEEEE-EESSCCCH-HH-HHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCeEE-eCCCCccH-HH-HHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            4566555 77763111 11 112222222    367999999999865         1222222222111100     00


Q ss_pred             -CCceEEEEecc--ccCCCHHHHHHHHHHHHHhhh
Q 029446          150 -NRKWHIQGTCA--LKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       150 -~~~~~~~~~Sa--~~~~gi~~~~~~l~~~~~~~~  181 (193)
                       .....++.+|+  .++.|++++.+.+.+.+.+..
T Consensus       221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence             01125788999  566679999999988875443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.85  E-value=6e-10  Score=85.81  Aligned_cols=113  Identities=9%  Similarity=0.063  Sum_probs=64.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC------ccccccccceeE--EEEEEcCEEEEEEecCCCCCCH--------HhHHh
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGE------VLSTVPTIGFNV--EKVQYKNVIFTVWDVGGQEKLR--------PLWRH   80 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~------~~~~~~t~~~~~--~~~~~~~~~~~i~D~~g~~~~~--------~~~~~   80 (193)
                      ..+++++|.+|+|||||+|++.+..      .....+..+.+.  ..+... ..+.++||||-....        .....
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~  238 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLKL  238 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence            4689999999999999999998752      111122222222  222222 238999999943221        11112


Q ss_pred             h--hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 029446           81 Y--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT  135 (193)
Q Consensus        81 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  135 (193)
                      +  ....+.++++++......+..+..  .+.+.   ..+.|+++++||.|..+...
T Consensus       239 ~~~~~~i~~~~~~l~~~~~~~~g~l~~--~d~l~---~~~~~~~~v~nk~d~~~~~~  290 (368)
T 3h2y_A          239 ITPTKEIKPMVFQLNEEQTLFFSGLAR--FDYVS---GGRRAFTCHFSNRLTIHRTK  290 (368)
T ss_dssp             HSCSSCCCCEEEEECTTEEEEETTTEE--EEEEE---SSSEEEEEEECTTSCEEEEE
T ss_pred             hccccccCceEEEEcCCCEEEEcceEE--EEEec---CCCceEEEEecCcccccccc
Confidence            1  256889999998842211111000  11111   24689999999999877543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.82  E-value=1.8e-09  Score=79.36  Aligned_cols=55  Identities=24%  Similarity=0.244  Sum_probs=35.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE--EEEEcCEEEEEEecCCCCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE--KVQYKNVIFTVWDVGGQEK   73 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~g~~~   73 (193)
                      ++++++|.+|+|||||+|++.+.....+.++.+.+..  .+.. ...+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence            7999999999999999999998876554444444322  2222 34789999999553

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.74  E-value=6.5e-09  Score=77.22  Aligned_cols=58  Identities=19%  Similarity=0.312  Sum_probs=37.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeE--EEEEEcCEEEEEEecCCCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNV--EKVQYKNVIFTVWDVGGQE   72 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~g~~   72 (193)
                      ....++++++|.+|+|||||+|++.+.....+.++.+.+.  ..+.. +..+.+|||||-.
T Consensus       117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~  176 (282)
T 1puj_A          117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL  176 (282)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred             CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence            3567899999999999999999999877554433333322  12222 3468999999943

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.73  E-value=1.1e-10  Score=87.54  Aligned_cols=105  Identities=17%  Similarity=0.147  Sum_probs=67.3

Q ss_pred             HHhhhcCCCEEEEEEECCChhhHHH-HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcCCCCc
Q 029446           78 WRHYFNNTDGLIYVVDSLDRERIGK-AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLKNRK  152 (193)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~  152 (193)
                      .+..+.++|.+++|+|+.++..-.. +..++... ..   .++|.++|+||+|+.++..    .+++.+.+     +..+
T Consensus        80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~-~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-----~~~g  150 (307)
T 1t9h_A           80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV-EA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RNIG  150 (307)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH-HT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HHHT
T ss_pred             hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECCccCchhhhHHHHHHHHHHH-----HhCC
Confidence            3346789999999999986653333 33333222 22   5788999999999987632    23333332     2234


Q ss_pred             eEEEEeccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446          153 WHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  193 (193)
Q Consensus       153 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~  193 (193)
                      ++++.+||.++.|++++++.....+  ..--|.+++|||+|
T Consensus       151 ~~v~~~sa~~~~g~~~L~~~~~G~~--~~lvG~sG~GKSTL  189 (307)
T 1t9h_A          151 YDVYLTSSKDQDSLADIIPHFQDKT--TVFAGQSGVGKSSL  189 (307)
T ss_dssp             CCEEECCHHHHTTCTTTGGGGTTSE--EEEEESHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHhhcCCCE--EEEECCCCCCHHHH
Confidence            5799999999999888766542211  11237778887763

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.63  E-value=1.4e-08  Score=77.54  Aligned_cols=101  Identities=22%  Similarity=0.135  Sum_probs=64.0

Q ss_pred             hhcCCCEEEEEEECCChhhHHH-HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCcCCCCceEEE
Q 029446           81 YFNNTDGLIYVVDSLDRERIGK-AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDLKNRKWHIQ  156 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~  156 (193)
                      ...++|.+++|.+. .|..-.+ +..++...-.    .++|.++|+||+|+.+...   .+++...+     +..+++++
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y-----~~~G~~v~  196 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIY-----RNIGYRVL  196 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHH-----HTTTCCEE
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHH-----HhCCCcEE
Confidence            45899999988665 4543333 3333322211    4678899999999987532   11222222     34556799


Q ss_pred             EeccccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446          157 GTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  193 (193)
Q Consensus       157 ~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~  193 (193)
                      .+||.++.|++++...+...+  ..--|.+++|||+|
T Consensus       197 ~~Sa~~~~gl~~L~~~~~G~~--~~lvG~sG~GKSTL  231 (358)
T 2rcn_A          197 MVSSHTQDGLKPLEEALTGRI--SIFAGQSGVGKSSL  231 (358)
T ss_dssp             ECBTTTTBTHHHHHHHHTTSE--EEEECCTTSSHHHH
T ss_pred             EEecCCCcCHHHHHHhcCCCE--EEEECCCCccHHHH
Confidence            999999999998876542211  11238999999864

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.55  E-value=5.3e-07  Score=70.65  Aligned_cols=111  Identities=20%  Similarity=0.173  Sum_probs=65.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc------CCcc----cc------------ccccceeEEEE-----------------
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI------GEVL----ST------------VPTIGFNVEKV-----------------   56 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~------~~~~----~~------------~~t~~~~~~~~-----------------   56 (193)
                      ....|+++|.+|+||||++..|..      ....    +.            ....++.....                 
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            467899999999999999998873      1110    00            00112211110                 


Q ss_pred             EEcCEEEEEEecCCCCCCHHhHH------hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 029446           57 QYKNVIFTVWDVGGQEKLRPLWR------HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  130 (193)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  130 (193)
                      ...+..+.++||+|.........      .....+|.+++|+|+.......+..   ..+...    -.+..+|+||.|.
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~----~~i~gVIlTKlD~  251 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA----TPIGSIIVTKLDG  251 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS----CTTEEEEEECCSS
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh----CCCeEEEEECCCC
Confidence            01247899999999654322111      1123689999999997654433322   233221    2345699999998


Q ss_pred             CCC
Q 029446          131 KGA  133 (193)
Q Consensus       131 ~~~  133 (193)
                      ...
T Consensus       252 ~~~  254 (443)
T 3dm5_A          252 SAK  254 (443)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            754

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.47  E-value=2.2e-07  Score=75.31  Aligned_cols=59  Identities=19%  Similarity=0.128  Sum_probs=41.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-cccc-ccceeEEEEE-------EcCEEEEEEecCCCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVP-TIGFNVEKVQ-------YKNVIFTVWDVGGQE   72 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~-t~~~~~~~~~-------~~~~~~~i~D~~g~~   72 (193)
                      ......|+|+|.+|+|||||+|+|.+.... .... |.+.+.....       ..+..+.++||||-.
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            456789999999999999999999987642 2222 2222222221       246789999999943

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.33  E-value=3.9e-07  Score=74.56  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      ..++|+|+.|||||||++.+.+-.
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            459999999999999999999864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.33  E-value=8.4e-07  Score=69.63  Aligned_cols=109  Identities=20%  Similarity=0.201  Sum_probs=64.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC------cc--ccc--------------------------cccce-eE--EEE-EE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGE------VL--STV--------------------------PTIGF-NV--EKV-QY   58 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~------~~--~~~--------------------------~t~~~-~~--~~~-~~   58 (193)
                      ...|+++|.+|+||||+++.|....      ..  ...                          .+... ..  ..+ ..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999987621      10  000                          00000 00  000 01


Q ss_pred             cCEEEEEEecCCCCCCHHhHHh------hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCC-e-EEEEEeCCCC
Q 029446           59 KNVIFTVWDVGGQEKLRPLWRH------YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS-V-ILVFANKQDM  130 (193)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl  130 (193)
                      ....+.++||||..........      .+..+|.+++|+|+.....  .. .....+ .    ... | ..+|+||.|.
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~-~~~~~~-~----~~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AG-IQAKAF-K----EAVGEIGSIIVTKLDG  250 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HH-HHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HH-HHHHHH-h----hcccCCeEEEEeCCCC
Confidence            4578999999997654322211      1126899999999975432  21 222222 2    123 4 7899999998


Q ss_pred             CCC
Q 029446          131 KGA  133 (193)
Q Consensus       131 ~~~  133 (193)
                      ...
T Consensus       251 ~~~  253 (432)
T 2v3c_C          251 SAK  253 (432)
T ss_dssp             CST
T ss_pred             ccc
Confidence            653

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.32  E-value=3.3e-06  Score=66.09  Aligned_cols=111  Identities=19%  Similarity=0.184  Sum_probs=64.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc------CCcc----c-c-----------ccccceeEEEE-----------------
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI------GEVL----S-T-----------VPTIGFNVEKV-----------------   56 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~------~~~~----~-~-----------~~t~~~~~~~~-----------------   56 (193)
                      ....|+++|++|+||||++..|..      ....    + +           ....++.....                 
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            356789999999999999998873      1110    0 0           00111111110                 


Q ss_pred             EEcCEEEEEEecCCCCC--CHH----hHHh--hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446           57 QYKNVIFTVWDVGGQEK--LRP----LWRH--YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ  128 (193)
Q Consensus        57 ~~~~~~~~i~D~~g~~~--~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  128 (193)
                      ......+.++||||...  ...    ....  ..-..+.+++|+|+...+...++...+.+.       -.+..+|+||.
T Consensus       176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKl  248 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKM  248 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECG
T ss_pred             HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecc
Confidence            01257889999999654  111    1111  112579999999997654433333333332       13467999999


Q ss_pred             CCCCC
Q 029446          129 DMKGA  133 (193)
Q Consensus       129 Dl~~~  133 (193)
                      |....
T Consensus       249 D~~a~  253 (433)
T 3kl4_A          249 DGTAK  253 (433)
T ss_dssp             GGCSC
T ss_pred             ccccc
Confidence            97753

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.07  E-value=6.4e-06  Score=61.52  Aligned_cols=135  Identities=18%  Similarity=0.120  Sum_probs=74.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc------CCcc----c-ccc-----------ccceeEEE-----------------EE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI------GEVL----S-TVP-----------TIGFNVEK-----------------VQ   57 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~------~~~~----~-~~~-----------t~~~~~~~-----------------~~   57 (193)
                      .-.++++|.+|+||||++..+..      +...    + +.+           ..++.+..                 ..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            44688899999999999998863      2111    0 000           01111110                 01


Q ss_pred             EcCEEEEEEecCCCCC--CHHhHH------hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCC
Q 029446           58 YKNVIFTVWDVGGQEK--LRPLWR------HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQ  128 (193)
Q Consensus        58 ~~~~~~~i~D~~g~~~--~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~  128 (193)
                      .....+.++||||...  ......      .....+|.+++|+|+.....   .......+..     ..| ..+|+||.
T Consensus       178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~  249 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKM  249 (297)
T ss_dssp             HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECG
T ss_pred             hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCC
Confidence            1456899999999877  432211      12347999999999864322   2222233221     234 67899999


Q ss_pred             CCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446          129 DMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus       129 Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      |...... ...+...        .+.|+..++  .|++++++
T Consensus       250 D~~~~~g~~~~~~~~--------~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          250 DGTAKGGGALSAVAA--------TGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             GGCTTHHHHHHHHHT--------TTCCEEEEE--CSSSTTCE
T ss_pred             CCCcchHHHHHHHHH--------HCcCEEEEe--CCCChhhc
Confidence            9764311 1122222        234565555  56766543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.98  E-value=7.1e-07  Score=70.92  Aligned_cols=95  Identities=27%  Similarity=0.308  Sum_probs=57.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEE----EcCEEEEEEecCCCCC--CHHhH--------Hh
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQ----YKNVIFTVWDVGGQEK--LRPLW--------RH   80 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~----~~~~~~~i~D~~g~~~--~~~~~--------~~   80 (193)
                      ....+|+++|.+|+||||+.++|.........++..++...+.    .......+||..|.+.  .+..+        ..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4668999999999999999999976433221222222211110    0123456889888732  23332        45


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHH
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAI  110 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  110 (193)
                      ++...++.++|+|.++. +.+....|+..+
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~  145 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAMIFNFG  145 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence            56667888999999977 344444444443

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.86  E-value=2.6e-05  Score=61.26  Aligned_cols=27  Identities=15%  Similarity=0.076  Sum_probs=23.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ..+..-|.|+|.+++|||+|+|.+.+.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            345678999999999999999999863

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.80  E-value=0.0001  Score=50.64  Aligned_cols=108  Identities=10%  Similarity=0.028  Sum_probs=49.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhh----hcCCCEEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHY----FNNTDGLIYVVD   93 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~~d~~i~v~d   93 (193)
                      ..++++|.+|+|||||++++.....     ..+.....+......+ -+|.+|.+.++.....+    ........++.+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~-----~~g~~v~~i~~~~~~~-~id~~g~Ds~~~~~~G~~~v~i~~~~~~~~~~~   80 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALC-----ARGIRPGLIKHTHHDM-DVDKPGKDSYELRKAGAAQTIVASQQRWALMTE   80 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcc-----ccCCceeEEeeCCCcc-ccCCCCCceEEEEeCCcceeecccchhheeeee
Confidence            4689999999999999999986421     1223333444433332 24666655443222111    011122223333


Q ss_pred             C--CChhhHHHHHHHHHHH------HcCCCCCCCeEEEEEeCCCCC
Q 029446           94 S--LDRERIGKAKQEFQAI------IKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        94 ~--~~~~s~~~~~~~~~~~------~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      .  ..+..+..+...+...      +........|.|+|.+|.+..
T Consensus        81 ~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~~~~pki~v~~~~~~~  126 (174)
T 1np6_A           81 TPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGH  126 (174)
T ss_dssp             CSSSCCCCHHHHHHHSCGGGCSEEEEESCSSCCSEEEEEECTTSSC
T ss_pred             ccCCchhhHHHHHHhcCCCcchHHHHHHHhhcCCCEEEEEecccCC
Confidence            1  1224455554332211      112233568999999998743

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.77  E-value=0.00029  Score=52.79  Aligned_cols=121  Identities=18%  Similarity=0.213  Sum_probs=64.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC------cc----ccc------------cccceeEEE---------E--------EE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE------VL----STV------------PTIGFNVEK---------V--------QY   58 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~------~~----~~~------------~t~~~~~~~---------~--------~~   58 (193)
                      -.++++|++|+||||++..+....      ..    +..            ...++.+..         +        ..
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~  184 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALA  184 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHh
Confidence            468899999999999998886421      10    000            001111110         0        01


Q ss_pred             cCEEEEEEecCCCCCCHHhHH-------hhh-----cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 029446           59 KNVIFTVWDVGGQEKLRPLWR-------HYF-----NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN  126 (193)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n  126 (193)
                      ....+.+.||||.........       ..+     ..++.+++|+|+...  .+.+. ....+...   .+. .-+|+|
T Consensus       185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~-~a~~~~~~---~~i-~gvVlT  257 (306)
T 1vma_A          185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLV-QAKIFKEA---VNV-TGIILT  257 (306)
T ss_dssp             TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHH-HHHHHHHH---SCC-CEEEEE
T ss_pred             cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHH-HHHHHHhc---CCC-CEEEEe
Confidence            356799999999754433211       111     247899999998633  12222 22222221   111 246789


Q ss_pred             CCCCCCCCC-HhHHHhhhCC
Q 029446          127 KQDMKGAMT-PMEVCEGLGL  145 (193)
Q Consensus       127 K~Dl~~~~~-~~~~~~~~~~  145 (193)
                      |.|....-. ...+....+.
T Consensus       258 k~D~~~~gG~~l~~~~~~~~  277 (306)
T 1vma_A          258 KLDGTAKGGITLAIARELGI  277 (306)
T ss_dssp             CGGGCSCTTHHHHHHHHHCC
T ss_pred             CCCCccchHHHHHHHHHHCC
Confidence            999765432 2344555543

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.77  E-value=5.7e-05  Score=59.31  Aligned_cols=109  Identities=25%  Similarity=0.257  Sum_probs=62.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHh-------cCCcc----cc-cc-----------ccceeEEE-----------------E
Q 029446           17 EMRVVMLGLDAAGKTTILYKLH-------IGEVL----ST-VP-----------TIGFNVEK-----------------V   56 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~-------~~~~~----~~-~~-----------t~~~~~~~-----------------~   56 (193)
                      ...|+++|.+|+||||++..|.       +....    +. .+           ..++.+..                 .
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~  179 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA  179 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence            4578889999999999988886       32211    00 00           01111111                 0


Q ss_pred             EEcCEEEEEEecCCCCCCHH-hHH-----hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCC
Q 029446           57 QYKNVIFTVWDVGGQEKLRP-LWR-----HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQD  129 (193)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D  129 (193)
                      ......+.++||||...... ...     .....++.+++|+|+......-..   ...+..     ..+ .-+|+||.|
T Consensus       180 ~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~---~~~f~~-----~l~i~gvVlnK~D  251 (433)
T 2xxa_A          180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT---AKAFNE-----ALPLTGVVLTKVD  251 (433)
T ss_dssp             HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH---HHHHHH-----HSCCCCEEEECTT
T ss_pred             HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH---HHHHhc-----cCCCeEEEEecCC
Confidence            11367899999999765422 221     123468999999999754332222   222211     122 237999999


Q ss_pred             CCCC
Q 029446          130 MKGA  133 (193)
Q Consensus       130 l~~~  133 (193)
                      ....
T Consensus       252 ~~~~  255 (433)
T 2xxa_A          252 GDAR  255 (433)
T ss_dssp             SSSC
T ss_pred             CCcc
Confidence            7654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.74  E-value=5.4e-05  Score=57.29  Aligned_cols=137  Identities=18%  Similarity=0.183  Sum_probs=73.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc----------c------------ccccceeEEEE----------------
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS----------T------------VPTIGFNVEKV----------------   56 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~----------~------------~~t~~~~~~~~----------------   56 (193)
                      ...--++++|+.||||||+++.+.+...+.          .            ....++.+...                
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            345689999999999999999987521110          0            00111111100                


Q ss_pred             -EEcCEEEEEEecCCCCCCHHhHHhh------hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 029446           57 -QYKNVIFTVWDVGGQEKLRPLWRHY------FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD  129 (193)
Q Consensus        57 -~~~~~~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  129 (193)
                       ......+.+.|++|...........      .-..|-.++++|+......-+   ....+...    ...-++++||.|
T Consensus       207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~---~~~~~~~~----~~it~iilTKlD  279 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVE---QARQFNEA----VKIDGIILTKLD  279 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHH---HHHHHHHH----SCCCEEEEECGG
T ss_pred             HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHH---HHHHHHHh----cCCCEEEEeCcC
Confidence             0024567789999965432211111      124789999999865543322   23333211    012378899999


Q ss_pred             CCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446          130 MKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       130 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      ...... .-.+....+.        |+..++  +|+++++
T Consensus       280 ~~a~~G~~l~~~~~~~~--------pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          280 ADARGGAALSISYVIDA--------PILFVG--VGQGYDD  309 (328)
T ss_dssp             GCSCCHHHHHHHHHHTC--------CEEEEE--CSSSTTC
T ss_pred             CccchhHHHHHHHHHCC--------CEEEEe--CCCCccc
Confidence            744321 1223343433        556565  6776654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.69  E-value=4e-05  Score=60.81  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .-.++|+|..|||||||++.+.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            44789999999999999999875

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.52  E-value=5.2e-05  Score=52.26  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .+++++|++|||||||++.+.+-
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998764

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.41  E-value=0.001  Score=52.01  Aligned_cols=68  Identities=15%  Similarity=0.137  Sum_probs=38.6

Q ss_pred             cCEEEEEEecCCCCCCHH-hHH-----hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           59 KNVIFTVWDVGGQEKLRP-LWR-----HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                      ....+.++||||...... ...     ...-.++.+++|+|+......   ......+...    -...-+|+||.|...
T Consensus       179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~a---v~~a~~f~~~----l~i~GVIlTKlD~~~  251 (425)
T 2ffh_A          179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEA---LSVARAFDEK----VGVTGLVLTKLDGDA  251 (425)
T ss_dssp             TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHH---HHHHHHHHHH----TCCCEEEEESGGGCS
T ss_pred             CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHH---HHHHHHHHhc----CCceEEEEeCcCCcc
Confidence            356799999999765422 111     112258999999998643222   2222222211    011357889999754


Q ss_pred             C
Q 029446          133 A  133 (193)
Q Consensus       133 ~  133 (193)
                      .
T Consensus       252 ~  252 (425)
T 2ffh_A          252 R  252 (425)
T ss_dssp             S
T ss_pred             c
Confidence            3

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.40  E-value=0.0013  Score=45.85  Aligned_cols=69  Identities=10%  Similarity=0.028  Sum_probs=46.8

Q ss_pred             CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCC
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKG  132 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~  132 (193)
                      ...+.++|+|+..  .......+..+|.+++++..+...  ......+..+.... ...+.++.+|+|+.|...
T Consensus        75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~  144 (206)
T 4dzz_A           75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA  144 (206)
T ss_dssp             TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred             CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence            5789999999876  334455667899999999887443  45555444443321 124567799999999543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.34  E-value=0.00011  Score=50.66  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++++|++|||||||++.+.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.30  E-value=0.00012  Score=51.25  Aligned_cols=21  Identities=48%  Similarity=0.604  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .++|+|++|||||||++.+.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999976

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.28  E-value=0.00015  Score=51.02  Aligned_cols=27  Identities=22%  Similarity=0.268  Sum_probs=23.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ......|+|+|++|||||||++.+.+-
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            346679999999999999999988754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.23  E-value=0.00017  Score=49.86  Aligned_cols=24  Identities=25%  Similarity=0.196  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .-.++++|++||||||+++.+.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            346899999999999999999875

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.21  E-value=0.00019  Score=49.19  Aligned_cols=26  Identities=15%  Similarity=0.146  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      ..-.+++.|++|+|||||++.+.+..
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            34578999999999999999887643

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.20  E-value=0.00018  Score=50.33  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      --++++|++|||||||++.+.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            35899999999999999999864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.19  E-value=0.00019  Score=50.52  Aligned_cols=23  Identities=35%  Similarity=0.365  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      -++++|+.|||||||++.+.+-.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57899999999999999988643

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.19  E-value=0.00019  Score=49.01  Aligned_cols=21  Identities=33%  Similarity=0.436  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      -++++|++|||||||++.+..
T Consensus        11 i~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHcc
Confidence            578999999999999997553

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.15  E-value=0.00022  Score=50.68  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -.++|+|+.|||||||++.+.+-
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999999864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.14  E-value=0.00022  Score=50.76  Aligned_cols=24  Identities=17%  Similarity=0.241  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      --++|+|+.|||||||++.+.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            367899999999999999998743

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.13  E-value=0.0003  Score=50.81  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~   38 (193)
                      +...|+|+|++||||||+++.+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999999998

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.10  E-value=0.00027  Score=47.63  Aligned_cols=24  Identities=33%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      =.++++|+.|||||||++.+.+..
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            368999999999999999998765

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.09  E-value=0.011  Score=41.58  Aligned_cols=67  Identities=10%  Similarity=-0.035  Sum_probs=46.9

Q ss_pred             CEEEEEEecCCC-CCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           60 NVIFTVWDVGGQ-EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        60 ~~~~~i~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                      ...+.++|+|+. ....  ....+..+|.+++++..+ ..++......+..+....   +.++.+|+|+.|...
T Consensus        67 ~yD~viiD~p~~~~~~~--~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDED--LEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP  134 (209)
T ss_dssp             GCSEEEEEEECCCSSSH--HHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred             cCCEEEEeCCCCcCcHH--HHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence            567999999987 4432  345567899999999886 455666655555554321   456889999999664

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.08  E-value=0.00028  Score=49.33  Aligned_cols=26  Identities=19%  Similarity=0.349  Sum_probs=21.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ...-.|+|+|++|||||||++.|.+.
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            34457899999999999999999864

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.07  E-value=0.00031  Score=50.58  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .++++|+.|||||||++.+.+-..
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            579999999999999999886543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.06  E-value=0.00031  Score=53.69  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .++++|++|+|||||+|.+.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            689999999999999999998655

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.05  E-value=0.00049  Score=51.82  Aligned_cols=30  Identities=20%  Similarity=0.029  Sum_probs=24.1

Q ss_pred             hhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           10 DVFFGNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        10 ~~~~~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ........+-|+|+|++|||||||++.+.+
T Consensus        85 ~~~~~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           85 GKPEPKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             TCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            333345678899999999999999988864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.05  E-value=0.0007  Score=46.27  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=26.7

Q ss_pred             HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446            5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ++++.........-.+++.|++|+|||++++.+...
T Consensus        31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence            444444444445567899999999999999988754

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.04  E-value=0.00037  Score=49.00  Aligned_cols=25  Identities=28%  Similarity=0.271  Sum_probs=21.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .....|+|+|+.|||||||++.+.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998876

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.04  E-value=0.00031  Score=49.46  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .--|+++|++||||||+++.|.+..
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            3468999999999999999998654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.02  E-value=0.00035  Score=49.88  Aligned_cols=23  Identities=35%  Similarity=0.609  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.02  E-value=0.00084  Score=50.10  Aligned_cols=37  Identities=24%  Similarity=0.349  Sum_probs=26.6

Q ss_pred             hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc
Q 029446            4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL   43 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~   43 (193)
                      .+..++....   .-.++++|++|+|||||+|.+.+...+
T Consensus       159 gv~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~~~  195 (301)
T 1u0l_A          159 GIEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGLKL  195 (301)
T ss_dssp             THHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             CHHHHHHHhc---CCeEEEECCCCCcHHHHHHHhcccccc
Confidence            3444444333   236789999999999999999876544

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.01  E-value=0.00043  Score=46.84  Aligned_cols=20  Identities=20%  Similarity=0.398  Sum_probs=18.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHH
Q 029446           18 MRVVMLGLDAAGKTTILYKL   37 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l   37 (193)
                      +.|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.99  E-value=0.00038  Score=48.05  Aligned_cols=21  Identities=24%  Similarity=0.324  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .++++|++||||||+++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.98  E-value=0.00062  Score=47.49  Aligned_cols=27  Identities=44%  Similarity=0.450  Sum_probs=23.1

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .....+.|++.|.+||||||+.+.|..
T Consensus        16 ~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           16 PRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            445668999999999999999998864

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.98  E-value=0.0004  Score=47.12  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ..|+++|++||||||+.+.+.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998763

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.97  E-value=0.00043  Score=49.97  Aligned_cols=23  Identities=30%  Similarity=0.265  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.97  E-value=0.00045  Score=47.84  Aligned_cols=21  Identities=38%  Similarity=0.585  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029446           20 VVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~   40 (193)
                      |+|+|++|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.96  E-value=0.00041  Score=48.62  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ....|+++|++||||||+++.|...
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4457899999999999999999753

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.96  E-value=0.00045  Score=48.97  Aligned_cols=23  Identities=30%  Similarity=0.290  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.96  E-value=0.0012  Score=49.32  Aligned_cols=35  Identities=29%  Similarity=0.480  Sum_probs=25.3

Q ss_pred             hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446            4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .+..+++...   .-.++++|++|+|||||+|.+. ...
T Consensus       155 gi~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          155 GIDELVDYLE---GFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             THHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             CHHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            3444544332   3467999999999999999998 543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.95  E-value=0.00056  Score=47.76  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      ...|+++|++||||||+++.+.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3578999999999999999998654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.95  E-value=0.00045  Score=50.94  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++|+|+.|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57899999999999999998744

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.95  E-value=0.00048  Score=46.58  Aligned_cols=21  Identities=29%  Similarity=0.328  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .|++.|.+||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.95  E-value=0.00045  Score=50.54  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .++|+|+.|||||||++.+.+-..
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999999987543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.94  E-value=0.00042  Score=48.17  Aligned_cols=22  Identities=32%  Similarity=0.362  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++++|+.|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5789999999999999998763

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.94  E-value=0.00055  Score=46.64  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..|++.|.+||||||+.+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3689999999999999999986

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.94  E-value=0.00048  Score=50.26  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.93  E-value=0.00054  Score=49.36  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            67999999999999999998754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.93  E-value=0.00055  Score=48.29  Aligned_cols=22  Identities=36%  Similarity=0.521  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999854

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.92  E-value=0.00046  Score=48.20  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..-.|+++|++||||||+++.+.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998865

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.91  E-value=0.00053  Score=47.90  Aligned_cols=22  Identities=23%  Similarity=0.273  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ++|+|+|.+||||||+.+.+.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999876

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.91  E-value=0.00057  Score=49.56  Aligned_cols=23  Identities=17%  Similarity=0.196  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.91  E-value=0.00051  Score=50.40  Aligned_cols=23  Identities=35%  Similarity=0.372  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999998743

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.91  E-value=0.00058  Score=49.38  Aligned_cols=23  Identities=26%  Similarity=0.247  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998743

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.90  E-value=0.0006  Score=48.11  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999854

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.89  E-value=0.00061  Score=48.82  Aligned_cols=24  Identities=25%  Similarity=0.252  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .++++|+.|||||||++.+.+-..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            578999999999999999987543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.89  E-value=0.00055  Score=50.12  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            57899999999999999988754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.89  E-value=0.00056  Score=49.36  Aligned_cols=23  Identities=35%  Similarity=0.352  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.88  E-value=0.0006  Score=47.47  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +.|++.|.+||||||+.+.|..
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCccCHHHHHHHHHH
Confidence            3689999999999999999875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.87  E-value=0.00057  Score=49.82  Aligned_cols=23  Identities=30%  Similarity=0.271  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998754

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.87  E-value=0.00084  Score=46.23  Aligned_cols=26  Identities=15%  Similarity=0.314  Sum_probs=22.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .+...|+++|.+||||||+.+.|...
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            45578999999999999999998765

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.87  E-value=0.0008  Score=45.77  Aligned_cols=23  Identities=17%  Similarity=0.392  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ...++++|++||||||+.+.+.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45789999999999999998864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.87  E-value=0.00059  Score=49.55  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999988754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.87  E-value=0.00072  Score=48.00  Aligned_cols=23  Identities=22%  Similarity=0.208  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ...|+++|++||||||+.+.+.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.86  E-value=0.0002  Score=53.62  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      -.++++|++|+|||||+|.+.+...
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~~  198 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPELG  198 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC---
T ss_pred             CEEEEECCCCCCHHHHHHHhccccc
Confidence            3789999999999999999987543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.86  E-value=0.00068  Score=47.33  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ...|+++|.+||||||+.+.|..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998865

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.86  E-value=0.00061  Score=49.48  Aligned_cols=22  Identities=27%  Similarity=0.273  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++++|+.|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999884

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.86  E-value=0.00045  Score=48.76  Aligned_cols=22  Identities=27%  Similarity=0.271  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++++|+.|||||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999876

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.85  E-value=0.00069  Score=49.51  Aligned_cols=22  Identities=27%  Similarity=0.265  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++|+|+.|||||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999874

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.85  E-value=0.00062  Score=49.94  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++|+|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999875

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.84  E-value=0.00089  Score=45.63  Aligned_cols=36  Identities=25%  Similarity=0.400  Sum_probs=26.5

Q ss_pred             HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446            5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ++.+.+.......-.+++.|++|+|||++++.+...
T Consensus        31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           31 IRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             HHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence            344444444445667899999999999999888754

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.83  E-value=0.00064  Score=50.83  Aligned_cols=24  Identities=17%  Similarity=0.243  Sum_probs=20.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..=.++|+|++|+|||||++.+.+
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhh
Confidence            334789999999999999999875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.83  E-value=0.00074  Score=47.26  Aligned_cols=22  Identities=32%  Similarity=0.169  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +.|+++|++||||||+.+.+.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.83  E-value=0.00066  Score=49.91  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++|+|+.|||||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.82  E-value=0.00084  Score=46.29  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ....|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.82  E-value=0.00073  Score=49.90  Aligned_cols=23  Identities=43%  Similarity=0.635  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++|+|+.|||||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999998754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.82  E-value=0.00064  Score=49.71  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .=.++|+|+.|||||||++.+.+
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHH
Confidence            34689999999999999999876

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.81  E-value=0.0011  Score=49.70  Aligned_cols=25  Identities=24%  Similarity=0.212  Sum_probs=22.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .....|+|+|+.|||||||++.+.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999998876

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.81  E-value=0.00068  Score=49.33  Aligned_cols=24  Identities=29%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .++++|+.|||||||++.+.+-..
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999987543

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.81  E-value=0.00083  Score=48.49  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=22.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ...++|++.|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.80  E-value=0.0014  Score=48.72  Aligned_cols=27  Identities=11%  Similarity=0.122  Sum_probs=22.9

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .......|+|+|++|||||||++.+..
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345678999999999999999988764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.80  E-value=0.00072  Score=49.59  Aligned_cols=23  Identities=22%  Similarity=0.193  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999998753

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.80  E-value=0.00093  Score=45.98  Aligned_cols=27  Identities=33%  Similarity=0.291  Sum_probs=22.5

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ......|+++|.+||||||+.+.+...
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            345678999999999999999988653

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.79  E-value=0.0008  Score=47.40  Aligned_cols=22  Identities=41%  Similarity=0.440  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +.|+++|+|||||+|....+..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.78  E-value=0.00069  Score=48.07  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      -++|+|++|||||||++.+.+
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999986

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.78  E-value=0.00087  Score=45.99  Aligned_cols=23  Identities=35%  Similarity=0.384  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ...|+++|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999874

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.77  E-value=0.0008  Score=46.93  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      -.|+++|++||||||+.+.+..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998874

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.77  E-value=0.00094  Score=45.93  Aligned_cols=23  Identities=26%  Similarity=0.156  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ...|++.|.+||||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.76  E-value=0.00098  Score=47.20  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..+.|+++|.+||||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998865

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.76  E-value=0.001  Score=46.57  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ....|+|+|.+||||||+.+.+.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4468999999999999999999874

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.75  E-value=0.0009  Score=50.24  Aligned_cols=27  Identities=22%  Similarity=0.108  Sum_probs=23.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .....-|+|+|++|||||||++.+.+-
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            356678999999999999999998763

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.75  E-value=0.00079  Score=47.00  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=21.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .....|+++|++||||||+.+.+.+.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45568999999999999999988753

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.75  E-value=0.00091  Score=46.05  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .|++.|.+||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.74  E-value=0.00085  Score=45.71  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..|++.|.+||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.74  E-value=0.00095  Score=47.08  Aligned_cols=22  Identities=36%  Similarity=0.472  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.74  E-value=0.0005  Score=49.16  Aligned_cols=22  Identities=32%  Similarity=0.314  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHh-cC
Q 029446           19 RVVMLGLDAAGKTTILYKLH-IG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~-~~   40 (193)
                      -++++|+.||||||+++.+. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999998 54

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.73  E-value=0.00094  Score=48.89  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998765

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.73  E-value=0.0011  Score=46.27  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=22.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .....|+|+|.+||||||+++.+.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.72  E-value=0.001  Score=46.26  Aligned_cols=27  Identities=19%  Similarity=0.166  Sum_probs=23.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ..+...|+|+|.+||||||+.+.|...
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            356688999999999999999998765

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.71  E-value=0.0011  Score=47.93  Aligned_cols=25  Identities=24%  Similarity=0.218  Sum_probs=21.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .....|+|+|+.|||||||++.+.+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998876

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.69  E-value=0.0013  Score=45.83  Aligned_cols=25  Identities=32%  Similarity=0.383  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +...|++.|.+||||||+.+.|...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999865

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.68  E-value=0.0011  Score=46.36  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ...|++.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999865

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.68  E-value=0.0014  Score=45.69  Aligned_cols=26  Identities=31%  Similarity=0.218  Sum_probs=21.8

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ......|++.|.+||||||+.+.|..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34456899999999999999998864

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.67  E-value=0.0012  Score=44.58  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.67  E-value=0.00047  Score=47.12  Aligned_cols=52  Identities=19%  Similarity=0.176  Sum_probs=26.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCH
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLR   75 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (193)
                      .++|+|+.|||||||++.+.+-..+     .+.....+..++..+.-+|.++.+.++
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~~-----~g~~~G~I~~dg~~i~~~~~~~~d~~r   55 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILRE-----RGLRVAVVKRHAHGDFEIDKEGKDSWK   55 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHH-----TTCCEEEEEC------------CHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh-----cCCceEEEEEcCcccccCCccchhHHH
Confidence            6899999999999999998853221     123334555554444444544444333

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.66  E-value=0.0008  Score=51.59  Aligned_cols=25  Identities=28%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .-+++|+|++|||||||++.+.+-.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3489999999999999999988753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.66  E-value=0.0012  Score=45.50  Aligned_cols=23  Identities=30%  Similarity=0.294  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ...|++.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.64  E-value=0.0012  Score=49.10  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57999999999999999998754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.64  E-value=0.0012  Score=46.73  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ....|+|+|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999998864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.63  E-value=0.0013  Score=46.86  Aligned_cols=24  Identities=25%  Similarity=0.480  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +...|++.|.+||||||+.+.|..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999998864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.63  E-value=0.0015  Score=45.18  Aligned_cols=24  Identities=21%  Similarity=0.173  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +...|++.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999998864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.63  E-value=0.00079  Score=44.85  Aligned_cols=25  Identities=20%  Similarity=0.248  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .-.++++|++|+|||+|++.+.+..
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3468899999999999999988643

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.62  E-value=0.0015  Score=45.82  Aligned_cols=24  Identities=38%  Similarity=0.390  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +...|++.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.61  E-value=0.0014  Score=48.57  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ....|++.|++||||||+.+.+..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.61  E-value=0.00078  Score=50.42  Aligned_cols=22  Identities=36%  Similarity=0.428  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++|+|+.|||||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            6899999999999999998864

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.61  E-value=0.0014  Score=44.99  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..|+++|.+||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999864

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.59  E-value=0.0032  Score=41.52  Aligned_cols=27  Identities=22%  Similarity=0.250  Sum_probs=23.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .....|++.|++|+|||++.+.+....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            456779999999999999999987643

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.59  E-value=0.0011  Score=48.74  Aligned_cols=21  Identities=24%  Similarity=0.302  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029446           20 VVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~   40 (193)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999863

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.57  E-value=0.0013  Score=50.36  Aligned_cols=24  Identities=33%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      -++++|+.|||||||++.+.+-..
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            478999999999999999987543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.57  E-value=0.0015  Score=45.76  Aligned_cols=24  Identities=33%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ....|++.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.56  E-value=0.0013  Score=50.37  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      -++++|+.|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            57899999999999999988744

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.56  E-value=0.0012  Score=44.91  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      +|+++|.+||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.55  E-value=0.0015  Score=46.40  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +.|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.55  E-value=0.0013  Score=46.51  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +.+.|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.55  E-value=0.0015  Score=45.02  Aligned_cols=21  Identities=38%  Similarity=0.436  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.50  E-value=0.0015  Score=49.89  Aligned_cols=23  Identities=43%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      -++++|+.|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.50  E-value=0.0015  Score=49.99  Aligned_cols=22  Identities=27%  Similarity=0.258  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++|+|+.|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            8999999999999999998763

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.49  E-value=0.0012  Score=45.17  Aligned_cols=24  Identities=25%  Similarity=0.155  Sum_probs=16.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +...|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.49  E-value=0.0018  Score=44.03  Aligned_cols=23  Identities=26%  Similarity=0.261  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ...+.++|.+|+|||||+.++..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999885

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.49  E-value=0.0014  Score=47.39  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.49  E-value=0.0019  Score=45.56  Aligned_cols=24  Identities=21%  Similarity=0.169  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +.+.|+|.|.+||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.49  E-value=0.0029  Score=44.95  Aligned_cols=24  Identities=13%  Similarity=0.200  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..-.+++.|++|+|||++++.+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            556899999999999999998875

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.48  E-value=0.0019  Score=44.09  Aligned_cols=24  Identities=25%  Similarity=0.256  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ....|++.|.+|+||||+.+.+..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHH
Confidence            345799999999999999999874

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.47  E-value=0.0016  Score=49.31  Aligned_cols=23  Identities=26%  Similarity=0.241  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++|+|+.|||||||++.+.+-.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998753

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.47  E-value=0.0016  Score=49.79  Aligned_cols=23  Identities=39%  Similarity=0.309  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            47899999999999999998743

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.45  E-value=0.0017  Score=50.07  Aligned_cols=23  Identities=35%  Similarity=0.391  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            47899999999999999998744

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.45  E-value=0.0017  Score=49.77  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999999998744

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.45  E-value=0.002  Score=44.56  Aligned_cols=23  Identities=26%  Similarity=0.182  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ...|++.|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.43  E-value=0.0016  Score=49.97  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      -.++|+|+.|||||||++.+.+-.
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            478999999999999999998743

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.43  E-value=0.0016  Score=48.65  Aligned_cols=22  Identities=36%  Similarity=0.533  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      -.++++|+.||||||+++.+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999999875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.42  E-value=0.0037  Score=43.46  Aligned_cols=23  Identities=22%  Similarity=0.187  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -.+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999988753

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.41  E-value=0.0029  Score=44.20  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .+++.|++|+|||++++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999988753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.41  E-value=0.0018  Score=49.80  Aligned_cols=24  Identities=33%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      -++++|+.|||||||++.+.+-..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCC
Confidence            478999999999999999987543

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.41  E-value=0.0027  Score=43.62  Aligned_cols=23  Identities=26%  Similarity=0.180  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ...|++.|.+||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.41  E-value=0.0024  Score=45.61  Aligned_cols=25  Identities=40%  Similarity=0.412  Sum_probs=21.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .....|+++|.+||||||+.+.|..
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.41  E-value=0.0024  Score=47.17  Aligned_cols=25  Identities=16%  Similarity=0.339  Sum_probs=21.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .+.+.|+|.|.+||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998863

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.40  E-value=0.0016  Score=46.51  Aligned_cols=26  Identities=27%  Similarity=0.277  Sum_probs=22.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ....-|+|.|..||||||+++.+.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34568999999999999999998764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.39  E-value=0.0018  Score=49.79  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .=.++|+|+.||||||+++.+.+
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34699999999999999999976

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.39  E-value=0.0023  Score=44.94  Aligned_cols=21  Identities=19%  Similarity=0.175  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999887764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.39  E-value=0.0022  Score=46.42  Aligned_cols=27  Identities=22%  Similarity=0.277  Sum_probs=21.5

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ...+.+.|+|.|.+||||||+.+.|..
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            334668899999999999999988865

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.38  E-value=0.0023  Score=49.05  Aligned_cols=24  Identities=25%  Similarity=0.569  Sum_probs=21.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHh
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~   38 (193)
                      .+..||+++|.++||||||++++.
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHH
Confidence            567999999999999999988863

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.38  E-value=0.0019  Score=49.62  Aligned_cols=23  Identities=39%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            56899999999999999998743

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.38  E-value=0.0026  Score=46.11  Aligned_cols=23  Identities=26%  Similarity=0.225  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~   38 (193)
                      ....|+|+|++||||||+.+.+.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999998

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.38  E-value=0.0023  Score=46.61  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ...|++.|.+||||||+.+.+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.38  E-value=0.0015  Score=47.34  Aligned_cols=25  Identities=28%  Similarity=0.323  Sum_probs=21.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .....|+++|.+||||||+.+.+..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.38  E-value=0.00082  Score=47.20  Aligned_cols=21  Identities=38%  Similarity=0.528  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.37  E-value=0.0027  Score=47.47  Aligned_cols=123  Identities=16%  Similarity=0.160  Sum_probs=66.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc----------cc-cc-----------ccceeEEE--------------E---
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL----------ST-VP-----------TIGFNVEK--------------V---   56 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~----------~~-~~-----------t~~~~~~~--------------~---   56 (193)
                      ..-.++++|+.||||||+++.+.+-..+          +. .+           ..++.+..              +   
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999998742110          00 00           00111110              0   


Q ss_pred             EEcCEEEEEEecCCCCCCHHhH------------HhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446           57 QYKNVIFTVWDVGGQEKLRPLW------------RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF  124 (193)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~~------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv  124 (193)
                      ......+.+.|++|........            +......+.+++++|+......-+....+.....       ..+++
T Consensus       181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~-------~t~ii  253 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTGVI  253 (304)
T ss_dssp             HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSEEE
T ss_pred             HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcC-------CcEEE
Confidence            0013456799999965432211            1223457888999998765443333322222211       14788


Q ss_pred             EeCCCCCCCC-CHhHHHhhhCC
Q 029446          125 ANKQDMKGAM-TPMEVCEGLGL  145 (193)
Q Consensus       125 ~nK~Dl~~~~-~~~~~~~~~~~  145 (193)
                      +||.|..... ..-.+...++.
T Consensus       254 vTh~d~~a~gg~~l~i~~~~~~  275 (304)
T 1rj9_A          254 VTKLDGTAKGGVLIPIVRTLKV  275 (304)
T ss_dssp             EECTTSSCCCTTHHHHHHHHCC
T ss_pred             EECCcccccccHHHHHHHHHCC
Confidence            9999965432 23445555544

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.37  E-value=0.0019  Score=46.94  Aligned_cols=21  Identities=19%  Similarity=0.327  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.36  E-value=0.0019  Score=45.71  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      -++++|++|+|||||++.+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578899999999999999874

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.36  E-value=0.002  Score=44.12  Aligned_cols=22  Identities=36%  Similarity=0.535  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999988864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.33  E-value=0.0026  Score=43.42  Aligned_cols=24  Identities=38%  Similarity=0.433  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ....|+++|.+||||||+.+.|..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.31  E-value=0.0041  Score=45.64  Aligned_cols=26  Identities=15%  Similarity=0.264  Sum_probs=22.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ...-.+++.|++|+|||++++.+...
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            44567999999999999999998754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.30  E-value=0.0021  Score=47.23  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3899999999999999998864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.29  E-value=0.0021  Score=48.61  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -.+++.|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999998864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.29  E-value=0.0024  Score=43.12  Aligned_cols=21  Identities=29%  Similarity=0.376  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.28  E-value=0.0028  Score=45.43  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..+.|+|.|++||||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999998874

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.27  E-value=0.0024  Score=49.43  Aligned_cols=22  Identities=36%  Similarity=0.443  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++++|+.|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5799999999999999999863

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.26  E-value=0.0015  Score=49.68  Aligned_cols=23  Identities=35%  Similarity=0.281  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            57899999999999999998743

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.25  E-value=0.0025  Score=51.14  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      -.++|+|+.||||||+++.+.+-.
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            359999999999999999998644

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.24  E-value=0.003  Score=42.61  Aligned_cols=21  Identities=24%  Similarity=0.602  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .|++.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.24  E-value=0.0023  Score=47.43  Aligned_cols=21  Identities=14%  Similarity=0.256  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      -++|+|++|+|||||+..+.+
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            578999999999999998865

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.24  E-value=0.0043  Score=45.36  Aligned_cols=27  Identities=22%  Similarity=0.268  Sum_probs=23.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ......+++.|++|+|||++++.+...
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            456678999999999999999998763

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.24  E-value=0.005  Score=46.90  Aligned_cols=26  Identities=31%  Similarity=0.440  Sum_probs=21.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .....+|+++|++|+||||+.+.+.+
T Consensus        21 ~g~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           21 DNYRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence            44567899999999999999987764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.23  E-value=0.0025  Score=48.52  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=22.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      -=+++++|+.|+|||||++.+.+...
T Consensus        71 Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           71 GQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34789999999999999999987643

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.23  E-value=0.0023  Score=49.97  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      =.++|+|+.||||||+++.+.+.
T Consensus       168 gii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999998863

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.22  E-value=0.0026  Score=45.11  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=19.1

Q ss_pred             CccE-EEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMR-VVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~-v~v~G~~~~GKssli~~l~~   39 (193)
                      +..| |+++|+|||||+|....|..
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3344 56789999999999988875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.22  E-value=0.0028  Score=43.29  Aligned_cols=21  Identities=19%  Similarity=0.327  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      -.+|+|+.|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.20  E-value=0.0032  Score=46.73  Aligned_cols=25  Identities=12%  Similarity=0.020  Sum_probs=20.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .+.-+++.|+||+|||+|.+.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456777899999999999998753

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.17  E-value=0.016  Score=45.64  Aligned_cols=35  Identities=14%  Similarity=0.121  Sum_probs=24.6

Q ss_pred             hHHHHhhhh--cCCCccEEEEEcCCCCCHHHHHHHHh
Q 029446            4 AFRKLFDVF--FGNSEMRVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus         4 ~~~~~~~~~--~~~~~~~v~v~G~~~~GKssli~~l~   38 (193)
                      ++..++...  ......-|.|+|..++|||+|+|.++
T Consensus        52 Al~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           52 ALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             HHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             HHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHH
Confidence            444454431  23455677899999999999999654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.17  E-value=0.0022  Score=48.23  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .-++|+|..|||||||++.+.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            357899999999999999999653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.16  E-value=0.0027  Score=48.59  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .-.++++|+.||||||+++.+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            34689999999999999999875

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.16  E-value=0.0029  Score=44.45  Aligned_cols=21  Identities=29%  Similarity=0.333  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999986

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.13  E-value=0.0015  Score=49.93  Aligned_cols=24  Identities=38%  Similarity=0.412  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .++++|+.|||||||++.+.+-..
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            578999999999999999987543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.11  E-value=0.0037  Score=43.44  Aligned_cols=25  Identities=24%  Similarity=0.211  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ..+.|++.|.+||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            5688999999999999999988753

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.11  E-value=0.0046  Score=46.85  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..+++.|++|+||||+++.+.+
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3499999999999999998876

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.11  E-value=0.0031  Score=45.02  Aligned_cols=23  Identities=30%  Similarity=0.260  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      --++++|++|+|||||+..+...
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            36789999999999999999873

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.0027  Score=50.21  Aligned_cols=25  Identities=32%  Similarity=0.343  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .--.++|+|+.|||||||++.+.+-
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCc
Confidence            4457899999999999999998764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.09  E-value=0.0038  Score=45.22  Aligned_cols=23  Identities=26%  Similarity=0.301  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .-.+++.|++|+|||++++.+.+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            34699999999999999999875

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.08  E-value=0.0042  Score=43.61  Aligned_cols=25  Identities=28%  Similarity=0.489  Sum_probs=21.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .....|+++|.+||||||+.+.+..
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999998865

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.06  E-value=0.0047  Score=44.11  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ....|++.|.+||||||+++.+...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5578999999999999999998753

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.05  E-value=0.0033  Score=45.63  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .-.|+++|.+||||||+.+.+..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999998865

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.03  E-value=0.0042  Score=41.26  Aligned_cols=20  Identities=20%  Similarity=0.478  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029446           19 RVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~   38 (193)
                      -.+|+|+.|+||||++..+.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            45889999999999999875

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.96  E-value=0.0061  Score=48.31  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=26.3

Q ss_pred             HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446            5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +.++.........-+++++|++|+|||++++.+...
T Consensus       189 i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence            334444433345668899999999999999988754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.95  E-value=0.0075  Score=45.55  Aligned_cols=23  Identities=22%  Similarity=0.353  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ..+++.|++|+|||++++.+...
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            34999999999999999988764

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.94  E-value=0.0084  Score=44.82  Aligned_cols=24  Identities=17%  Similarity=0.206  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .-.+++.|++|+|||+|+..+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999888753

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.94  E-value=0.0036  Score=45.60  Aligned_cols=28  Identities=29%  Similarity=0.233  Sum_probs=22.0

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ...+...|++.|..||||||+++.|...
T Consensus        20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           20 EGTRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHHh
Confidence            3345678999999999999999988754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.94  E-value=0.0055  Score=43.82  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=21.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .....|+|+|.+||||||+.+.+..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999998875

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.93  E-value=0.0063  Score=46.00  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ..+++.|++|+||||+++.+.+.
T Consensus        47 ~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           47 PHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            34899999999999999998764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.93  E-value=0.0046  Score=49.94  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .++++|+.|||||||++.+.+-..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            689999999999999999987543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.92  E-value=0.0042  Score=50.12  Aligned_cols=25  Identities=32%  Similarity=0.327  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      =-++++|+.|||||||++.+.+-..
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3579999999999999999987543

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.91  E-value=0.0051  Score=45.60  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..|+++|.+||||||+.+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.90  E-value=0.0044  Score=48.73  Aligned_cols=26  Identities=15%  Similarity=0.123  Sum_probs=22.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      -=+++|+|+.|+|||||++.+.+...
T Consensus       157 Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          157 GQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccC
Confidence            34789999999999999999987543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.90  E-value=0.0042  Score=47.81  Aligned_cols=24  Identities=25%  Similarity=0.155  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..-.++++|++|+|||||++.+.+
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            445789999999999999999885

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.90  E-value=0.008  Score=44.71  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ..-.+++.|++|+|||++++.+.+.
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHH
Confidence            4456999999999999999998853

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.85  E-value=0.0049  Score=50.25  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999998743

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.004  Score=46.81  Aligned_cols=30  Identities=7%  Similarity=0.047  Sum_probs=24.7

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      ......-.+++.|+||+|||++++.+....
T Consensus        40 i~~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           40 LMSSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             HHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             hcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            345677789999999999999999987543

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.83  E-value=0.0049  Score=43.58  Aligned_cols=21  Identities=29%  Similarity=0.303  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .+++.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.82  E-value=0.0046  Score=49.11  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      =.++|+|+.|||||||++.+.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            4678999999999999999876

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.80  E-value=0.0049  Score=45.26  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999988875

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.80  E-value=0.0071  Score=43.68  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..-.+++.|++|+|||++++.+..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999875

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.80  E-value=0.0049  Score=45.58  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=21.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .-.+++.|++|+|||++++.+.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999998763

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.77  E-value=0.0055  Score=49.94  Aligned_cols=23  Identities=26%  Similarity=0.275  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998743

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.74  E-value=0.0055  Score=50.17  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .++++|+.|+|||||++.+.+-..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            579999999999999999987543

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.71  E-value=0.0059  Score=46.81  Aligned_cols=20  Identities=25%  Similarity=0.439  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029446           19 RVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~   38 (193)
                      -++|+|+.|||||||++.++
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            36699999999999999987

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.71  E-value=0.01  Score=45.22  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      -.+++.|++|+|||++++.+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998875

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.71  E-value=0.01  Score=46.51  Aligned_cols=31  Identities=19%  Similarity=0.144  Sum_probs=23.9

Q ss_pred             hhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446            9 FDVFFGNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus         9 ~~~~~~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      |...--...--|++.|+||+|||+|++.+.+
T Consensus       207 f~~~g~~~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          207 FKDMGIRAPKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             HHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence            3333334456799999999999999999875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.70  E-value=0.01  Score=43.99  Aligned_cols=26  Identities=23%  Similarity=0.331  Sum_probs=21.2

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ......+++.|++|+|||++++.+..
T Consensus        64 ~~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           64 ETPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHH
Confidence            34456799999999999999986654

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.68  E-value=0.0071  Score=43.24  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=20.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..++++++|.+||||||+...+..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            468999999999999999988865

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.68  E-value=0.0039  Score=46.25  Aligned_cols=24  Identities=17%  Similarity=0.225  Sum_probs=18.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +.+.|+|.|+.||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999988764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.64  E-value=0.0074  Score=41.95  Aligned_cols=21  Identities=24%  Similarity=0.376  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.61  E-value=0.0095  Score=46.48  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ...-|+++|.+||||||+.+.+...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            4567899999999999999998753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.60  E-value=0.0072  Score=49.50  Aligned_cols=24  Identities=29%  Similarity=0.274  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .++++|+.|+|||||++.+.+-..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCC
Confidence            689999999999999999987543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.60  E-value=0.0065  Score=45.57  Aligned_cols=24  Identities=21%  Similarity=0.184  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .-.+++.|++|+|||+|++.+.+.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346899999999999999988753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.60  E-value=0.0067  Score=48.95  Aligned_cols=24  Identities=29%  Similarity=0.207  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .++|+|+.|||||||++.+.+-..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999987543

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.59  E-value=0.0067  Score=45.13  Aligned_cols=111  Identities=18%  Similarity=0.157  Sum_probs=59.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-----------cc-ccc-----------cceeEEEE-----------EEcCE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-----------ST-VPT-----------IGFNVEKV-----------QYKNV   61 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-----------~~-~~t-----------~~~~~~~~-----------~~~~~   61 (193)
                      ..-.++++|+.|+||||++..+......           +. .++           .+......           .....
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~  183 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY  183 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence            3457899999999999999888531110           00 000           01110000           11356


Q ss_pred             EEEEEecCCCCCCHHh-H---Hhhhc--CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           62 IFTVWDVGGQEKLRPL-W---RHYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        62 ~~~i~D~~g~~~~~~~-~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      .+.++||+|....... .   ...+.  ..+.+++|+|++..  ...+.++...+.    .-+. .-+|.||.|....
T Consensus       184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~----~l~~-~giVltk~D~~~~  254 (296)
T 2px0_A          184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS----SVPV-NQYIFTKIDETTS  254 (296)
T ss_dssp             SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS----SSCC-CEEEEECTTTCSC
T ss_pred             CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh----cCCC-CEEEEeCCCcccc
Confidence            8999999997654321 1   12222  36778999988643  233333222221    1111 2466799997654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.59  E-value=0.0059  Score=49.95  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|+|||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            78999999999999999988643

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.57  E-value=0.0074  Score=43.09  Aligned_cols=21  Identities=24%  Similarity=0.243  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      -+++.|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999777753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.57  E-value=0.005  Score=50.16  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6899999999999999988764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.56  E-value=0.011  Score=44.98  Aligned_cols=26  Identities=19%  Similarity=0.327  Sum_probs=21.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ...-.++|.|++|+|||||++.+.+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            34457899999999999999998763

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.55  E-value=0.013  Score=46.03  Aligned_cols=31  Identities=19%  Similarity=0.191  Sum_probs=24.0

Q ss_pred             hhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446            9 FDVFFGNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus         9 ~~~~~~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      |...--...--|++.|+||+|||+|++.+.+
T Consensus       207 f~~~g~~~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          207 FQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             HHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            4433334456799999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.54  E-value=0.0079  Score=48.55  Aligned_cols=24  Identities=29%  Similarity=0.272  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .++|+|+.|+|||||++.+.+-..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999988543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.52  E-value=0.0061  Score=40.06  Aligned_cols=25  Identities=16%  Similarity=0.126  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ....|++.|++|+|||++.+.+...
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHh
Confidence            4567999999999999999888754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.51  E-value=0.013  Score=45.80  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=20.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..--|++.|+||+|||+|++.+.+
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            334599999999999999999875

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.51  E-value=0.0089  Score=42.84  Aligned_cols=24  Identities=29%  Similarity=0.254  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ...|++.|..||||||+++.|...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            356899999999999999998754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.49  E-value=0.0066  Score=49.54  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.47  E-value=0.0076  Score=45.90  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      -+.|+|++|+|||||+..+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999988643

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.46  E-value=0.014  Score=44.58  Aligned_cols=22  Identities=41%  Similarity=0.450  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++|.|++|+||||+++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.43  E-value=0.0091  Score=48.91  Aligned_cols=24  Identities=29%  Similarity=0.272  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .++|+|+.|+|||||++.+.+-..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999999987543

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=95.42  E-value=0.059  Score=38.37  Aligned_cols=28  Identities=18%  Similarity=0.007  Sum_probs=23.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      ++..+-|+..|.++.|||+|++++++..
T Consensus        26 P~nkilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           26 PQNKILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             CCCceEEEecCcccccHHHHHHHHhccc
Confidence            4566677777999999999999999874

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.36  E-value=0.014  Score=45.27  Aligned_cols=31  Identities=19%  Similarity=0.230  Sum_probs=23.6

Q ss_pred             hhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446            9 FDVFFGNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus         9 ~~~~~~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      |...--...--|++.|+||+|||.|++.+.+
T Consensus       174 f~~~gi~~prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          174 FESLGIAQPKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             HHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred             HHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence            3333333445799999999999999999875

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.36  E-value=0.0089  Score=44.22  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..-.+++.|++|+|||++++.+..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998875

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.34  E-value=0.011  Score=41.30  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      ..|+++|++|+|||+|...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998653

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.30  E-value=0.0093  Score=44.84  Aligned_cols=23  Identities=13%  Similarity=0.289  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -.+++.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46999999999999999998864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.30  E-value=0.0098  Score=48.71  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCcc
Q 029446           20 VVMLGLDAAGKTTILYKLHIGEVL   43 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~~~~   43 (193)
                      ++++|+.|+|||||++.+.+-..+
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCC
Confidence            799999999999999999875543

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.29  E-value=0.011  Score=41.32  Aligned_cols=20  Identities=20%  Similarity=0.478  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029446           19 RVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~   38 (193)
                      -.+|+|+.|+||||++..+.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            45789999999999998874

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.28  E-value=0.01  Score=41.68  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .+.|++.|.+||||||+.+.+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988865

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.26  E-value=0.0065  Score=44.16  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      -.+++.|++|+|||++++.+..
T Consensus        45 ~~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHH
Confidence            3488999999999999999875

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=95.24  E-value=0.013  Score=45.40  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=22.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHh
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~   38 (193)
                      ..+.+|++++|...|||||+++.+-
T Consensus        37 ~~~~~klLLLG~geSGKSTi~KQmk   61 (402)
T 1azs_C           37 YRATHRLLLLGAGESGKSTIVKQMR   61 (402)
T ss_dssp             CTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred             hhccceEEEecCCCCchhhHHHHHH
Confidence            3577999999999999999988873

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.24  E-value=0.01  Score=44.08  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            36999999999999999988764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.19  E-value=0.016  Score=48.72  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=26.9

Q ss_pred             HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446            5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ++++.........-+++++|++|+|||++++.+...
T Consensus       189 i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~  224 (758)
T 3pxi_A          189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ  224 (758)
T ss_dssp             HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence            444444444456668999999999999999888654

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.18  E-value=0.019  Score=42.53  Aligned_cols=25  Identities=20%  Similarity=0.203  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ....+++.|++|+|||+++..+...
T Consensus        37 ~~~~~ll~G~~G~GKt~la~~l~~~   61 (319)
T 2chq_A           37 NIPHLLFSGPPGTGKTATAIALARD   61 (319)
T ss_dssp             CCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCcCHHHHHHHHHHH
Confidence            3335999999999999999888754

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.18  E-value=0.02  Score=48.16  Aligned_cols=36  Identities=19%  Similarity=0.285  Sum_probs=27.6

Q ss_pred             HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446            5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ++++.........-.++++|++|+|||++++.+...
T Consensus       195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~  230 (758)
T 1r6b_X          195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence            445555445556678999999999999999988753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.16  E-value=0.011  Score=44.39  Aligned_cols=24  Identities=13%  Similarity=0.252  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .-.+++.|++|+|||++++.+...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            347999999999999999998753

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.13  E-value=0.021  Score=44.56  Aligned_cols=31  Identities=16%  Similarity=0.211  Sum_probs=23.9

Q ss_pred             hhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446            9 FDVFFGNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus         9 ~~~~~~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      |...--...--|++.|+||+|||+|++.+.+
T Consensus       208 f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~  238 (437)
T 4b4t_I          208 YEEMGIKPPKGVILYGAPGTGKTLLAKAVAN  238 (437)
T ss_dssp             HHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred             HHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence            3333334456799999999999999999875

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.11  E-value=0.015  Score=39.90  Aligned_cols=21  Identities=19%  Similarity=0.154  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029446           20 VVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~   40 (193)
                      ++|+|.++||||+|..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999865

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.11  E-value=0.024  Score=43.26  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ..-.+++.|++|+|||++++.+...
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999998753

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.10  E-value=0.021  Score=41.70  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      -+++.|+||+|||.|+..+..
T Consensus       106 ~~~l~GppgtGKt~~a~ala~  126 (267)
T 1u0j_A          106 TIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            499999999999999998875

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.07  E-value=0.021  Score=42.45  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ..+++.|++|+|||++++.+...
T Consensus        43 ~~~ll~G~~G~GKt~la~~l~~~   65 (323)
T 1sxj_B           43 PHMIISGMPGIGKTTSVHCLAHE   65 (323)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            34999999999999999988754

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.05  E-value=0.023  Score=44.77  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ..+++.|++|+|||++++.+...
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            57999999999999999998754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.04  E-value=0.014  Score=43.89  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..|+|+|++|||||||...+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998875

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=95.03  E-value=0.018  Score=42.88  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ..+++.|++|+|||++++.+...
T Consensus        47 ~~~ll~G~~G~GKT~la~~l~~~   69 (327)
T 1iqp_A           47 PHLLFAGPPGVGKTTAALALARE   69 (327)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35999999999999999988764

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.02  E-value=0.38  Score=34.05  Aligned_cols=82  Identities=17%  Similarity=0.109  Sum_probs=57.1

Q ss_pred             CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV  139 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  139 (193)
                      .+.+.++|+|+....  .....+..+|.+++++..+ ..++..+...+..+... ......+-+|.|+.|.......+++
T Consensus       118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~v~N~~~~~~~~~~~~~  193 (245)
T 3ea0_A          118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEF-EKPISRIEIILNRADTNSRITSDEI  193 (245)
T ss_dssp             HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTC-SSCCSCEEEEEESTTSCTTSCHHHH
T ss_pred             hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHh-CCCccceEEEEecCCCCCCCCHHHH
Confidence            467999999986533  3445567899999999886 55666666666665432 2234557799999997666556677


Q ss_pred             HhhhCC
Q 029446          140 CEGLGL  145 (193)
Q Consensus       140 ~~~~~~  145 (193)
                      .+.++.
T Consensus       194 ~~~~~~  199 (245)
T 3ea0_A          194 EKVIGR  199 (245)
T ss_dssp             HHHHTS
T ss_pred             HHHhCC
Confidence            776664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-42
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-39
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	7e-35
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-34
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-32
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-32
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	5e-29
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-27
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	3e-27
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-26
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-26
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	5e-25
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	5e-25
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	8e-25
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	5e-23
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	7e-23
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-21
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	7e-21
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-20
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-20
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	7e-20
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	9e-20
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-18
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-16
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-16
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	4e-16
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	6e-16
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-13
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-13
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	5e-13
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-12
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-12
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-11
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	3e-10
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	5e-10
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	6e-10
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	3e-09
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	8e-09
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-08
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-08
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	4e-08
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	6e-08
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	6e-08
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	7e-08
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-07
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-07
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	4e-07
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	5e-07
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-06
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-06
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	4e-06
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-05
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-05
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-05
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-05
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-05
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	2e-04
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-04
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	0.002

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  138 bits (348), Expect = 2e-42
 Identities = 104/172 (60%), Positives = 132/172 (76%)

Query: 7   KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVW 66
           K+    FGN EMR++MLGLDAAGKTTILYKL +G+ ++T+PT+GFNVE V YKNV F VW
Sbjct: 2   KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61

Query: 67  DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
           DVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D  M +++IL+FAN
Sbjct: 62  DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121

Query: 127 KQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           KQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL S  K
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  130 bits (328), Expect = 2e-39
 Identities = 88/181 (48%), Positives = 130/181 (71%), Gaps = 1/181 (0%)

Query: 2   GQAFRKLFDVFFGNS-EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN 60
           G  F  +FD  +G++ E+R+++LGLD AGKTTILY+L IGEV++T PTIGFNVE + YKN
Sbjct: 1   GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN 60

Query: 61  VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 120
           +   VWD+GGQ  +RP WR Y+ +T  +I+VVDS D++R+  A +E   ++++  + ++ 
Sbjct: 61  LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 120

Query: 121 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
           +LVFANKQD  GA++  EV + L L +LK+R W I  + A+KG+G+ EGLDWL   +KE 
Sbjct: 121 LLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

Query: 181 R 181
           +
Sbjct: 181 Q 181

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  118 bits (297), Expect = 7e-35
 Identities = 81/177 (45%), Positives = 117/177 (66%), Gaps = 1/177 (0%)

Query: 2   GQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNV 61
           G  F +++   F + E +V+++GLD AGKTTILY+  + EV+ T PTIG NVE++   N 
Sbjct: 1   GILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 59

Query: 62  IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI 121
            F +WD+GGQE LR  W  Y+ NT+ +I VVDS DRERI   ++E   ++    +  + +
Sbjct: 60  RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 119

Query: 122 LVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           L+FANKQD+K  MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL+W+ S LK
Sbjct: 120 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  116 bits (290), Expect = 6e-34
 Identities = 100/160 (62%), Positives = 132/160 (82%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
           MR++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPL
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 78  WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
           WRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120

Query: 138 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
           E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL++ L
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score =  113 bits (282), Expect = 2e-32
 Identities = 70/161 (43%), Positives = 105/161 (65%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
           E+R+++LGLD AGKTT+L +L   ++    PT GFN++ VQ +     VWD+GGQ K+RP
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRP 75

Query: 77  LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
            WR YF NTD LIYV+DS DR+R  +  QE   ++++  +    +L+FANKQD+  A   
Sbjct: 76  YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 135

Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
            E+ EGL L  +++R W IQ   AL G+G+ +G++W+   +
Sbjct: 136 SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score =  112 bits (280), Expect = 2e-32
 Identities = 70/163 (42%), Positives = 111/163 (68%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
           E+R++MLGLD AGKTTIL K +  +V +  PT+GFN++ ++++     +WDVGGQ+ LR 
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS 61

Query: 77  LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
            WR+YF +TDGLI+VVDS DR+R+   ++E Q+++ +  +  + +L+FANKQD+ GA++ 
Sbjct: 62  YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC 121

Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
             + E L L  +++  W IQG  A+ G+ L  G+DWL   +  
Sbjct: 122 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (258), Expect = 5e-29
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 7/163 (4%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
           +++ LGLD AGKTT+L+ L    + +  PT     E++   N+ FT +D+GG  + R LW
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 61

Query: 79  RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
           + YF   +G++++VD+ D ER  +A+ E  A+     + +   ++  NK D   A++  E
Sbjct: 62  KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 121

Query: 139 VCEGLGLFDL-------KNRKWHIQGTCALKGDGLYEGLDWLA 174
           +   LGL +          R   +     +  +G  E   WL+
Sbjct: 122 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 12/178 (6%)

Query: 12  FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQ 71
                  ++V LGLD AGKTT+L+ L    +   VPT+    E++    + FT +D+GG 
Sbjct: 8   GLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGH 67

Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
            + R +W++Y    +G++++VD  D ER+ ++K+E  +++ D  + N  IL+  NK D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 132 GAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
            A++   + E  GL+            +L  R   +     LK  G  EG  W+A  +
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  100 bits (250), Expect = 3e-27
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 22/138 (15%)

Query: 3   QAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVI 62
           Q +R            R+++LG   +GK+TI+ ++ I      V T G    K Q   V 
Sbjct: 1   QVYRATH---------RLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDKVN 48

Query: 63  FTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------DSLDRERIGKAKQEFQAIIK 112
           F ++DVGGQ   R  W   FN+   +I+VV          +     R+ +A   F++I  
Sbjct: 49  FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 108

Query: 113 DPFMLNSVILVFANKQDM 130
           + ++    +++F NKQD+
Sbjct: 109 NRWLRTISVILFLNKQDL 126

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 97.1 bits (240), Expect = 3e-26
 Identities = 93/167 (55%), Positives = 124/167 (74%)

Query: 15  NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKL 74
             EMR+++LGLD AGKTTILY+L +GEV++T+PTIGFNVE V YKN+ F VWD+GG   +
Sbjct: 3   TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 62

Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134
           RP WR Y++NTD +IYVVDS DR+RIG +K E  A++++  +  ++++VFANKQDM+ AM
Sbjct: 63  RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122

Query: 135 TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
           T  E+   LGL  LK+RKW I  T A KG GL E ++WL  TLK  +
Sbjct: 123 TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 169

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 96.0 bits (238), Expect = 6e-26
 Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 10/167 (5%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIGFNVE----KVQYKNVIFTVWDVGGQE 72
           M+++++G    GK+ +L +    +   +   TIG + +     +  K V   +WD  GQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           + R +   Y+    G+I V D  D        +++   + +     + +L+  NK DM+ 
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTF-TNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
            +   +     G    K        + A   D + E    LA  ++E
Sbjct: 122 RVVTADQ----GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 93.6 bits (231), Expect = 5e-25
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 1/163 (0%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLR 75
           EM + ++GL  +GKTT +  +  G+     +PT+GFN+ K+   NV   +WD+GGQ + R
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFR 61

Query: 76  PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT 135
            +W  Y      ++Y+VD+ D+E+I  +K E   ++  P +    +LV  NK+D+ GA+ 
Sbjct: 62  SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD 121

Query: 136 PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
             E+ E + L  +++R+         + D +   L WL    K
Sbjct: 122 EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.2 bits (233), Expect = 5e-25
 Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 34/194 (17%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
           E+++++LG   +GK+T + ++ I    S VPT G        ++VIF + DVGGQ   R 
Sbjct: 2   ELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERR 60

Query: 77  LWRHYFNNTDGLIYVVDSLDRERIGK----------AKQEFQAIIKDPFMLNSVILVFAN 126
            W H F N   ++++V   + +++            +K  F+ II  P+  NS +++F N
Sbjct: 61  KWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 120

Query: 127 KQDMKGAMTPMEVCE-----------------------GLGLFDLKNRKWHIQGTCALKG 163
           K+D+                                   + L    ++  +   TCA   
Sbjct: 121 KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT 180

Query: 164 DGLYEGLDWLASTL 177
           + +      +  T+
Sbjct: 181 ENIRFVFAAVKDTI 194

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.3 bits (231), Expect = 8e-25
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 9/167 (5%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVE----KVQYKNVIFTVWDVGGQE 72
            +++++G    GKT +L++       ST + TIG + +    ++  K +   +WD  GQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           + R +   Y+    G++ V D  + +     +   + I +        +++         
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
                E     G     +       T A     +      LA  +K 
Sbjct: 127 RQVSKER----GEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 169

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.8 bits (219), Expect = 5e-23
 Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 9/167 (5%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVE----KVQYKNVIFTVWDVGGQE 72
            +++++G    GK+ +L +          + TIG + +    ++  K V   +WD  GQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           + R +   Y+  + G+I V D  D+E     K   Q I +        +LV         
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
            +   +V +          K     T AL    + +    +A  +KE
Sbjct: 127 RVVEYDVAK----EFADANKMPFLETSALDSTNVEDAFLTMARQIKE 169

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.4 bits (218), Expect = 7e-23
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 9/168 (5%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVP-----TIGFNVEKVQYKNVIFTVWDVGGQ 71
            ++++++G    GK+++L +         +              V        +WD  GQ
Sbjct: 7   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 66

Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
           E+ R L   Y+    G+I V D   R+   K       +       + V ++  NK D +
Sbjct: 67  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 126

Query: 132 GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
                            +          A   DG+    + L   + +
Sbjct: 127 NREVDRNEGLKF----ARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 170

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.0 bits (209), Expect = 2e-21
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 12/124 (9%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
            +++++LG   +GK+T L ++ I       PT G +    + KNV F + DVGGQ   R 
Sbjct: 2   LVKILLLGAGESGKSTFLKQMRIIH--GQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERK 59

Query: 77  LWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEFQAIIKDPFMLNSVILVFAN 126
            W   F++   ++++V S + +          R+ ++   F+ I+ +    N  I++F N
Sbjct: 60  RWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLN 119

Query: 127 KQDM 130
           K D+
Sbjct: 120 KTDL 123

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.5 bits (205), Expect = 7e-21
 Identities = 36/194 (18%), Positives = 73/194 (37%), Gaps = 37/194 (19%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
           E+++++LG   +GK+TI+ ++ I          G       +K++ F ++DVGGQ   R 
Sbjct: 2   EVKLLLLGAGESGKSTIVKQMKIIH----EAGTGIVETHFTFKDLHFKMFDVGGQRSERK 57

Query: 77  LWRHYFNNTDGLIYVVDSLDRERIGKAK----------QEFQAIIKDPFMLNSVILVFAN 126
            W H F     +I+ V   D + +              + F +I  + +  ++ I++F N
Sbjct: 58  KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLN 117

Query: 127 KQ-----------------DMKGAMTPMEVCEGLGL------FDLKNRKWHIQGTCALKG 163
           K+                 +  G+ T  E    +             ++ +   TCA   
Sbjct: 118 KKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 177

Query: 164 DGLYEGLDWLASTL 177
             +    D +   +
Sbjct: 178 KNVQFVFDAVTDVI 191

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.8 bits (201), Expect = 1e-20
 Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 9/167 (5%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY-----KNVIFTVWDVGGQE 72
            +++++G  + GKT+ L++           +      KV+      K +   +WD  GQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           + R +   Y+    G I + D  + E     +     I    +    V+LV         
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
            +   E           +  +      A     + +  + L   + E
Sbjct: 126 RVVSSERGR----QLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 1e-20
 Identities = 31/172 (18%), Positives = 53/172 (30%), Gaps = 9/172 (5%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPT-----IGFNVEKVQYKNVIFTVWDVGGQE 72
            + +++G    GK+ +L++    +             G  +  V  K V   +WD  GQE
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           + R + R Y+    G + V D   RE                     +IL    K     
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAG 184
                           +  +     T AL G+ + E     A  +     +G
Sbjct: 126 REVTFLEASRF----AQENELMFLETSALTGENVEEAFVQCARKILNKIESG 173

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 7e-20
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 18/177 (10%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIG--------------FNVEKVQYKNVI 62
           ++++ LG    GKTT LY+    +     + T+G               N    +   V 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 63  FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL 122
             +WD  GQE+ R L   +F +  G + + D   ++     +     +  + +  N  I+
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 123 VFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
           +  NK D+       EV E                T A  G  + + ++ L   + +
Sbjct: 126 LIGNKADL---PDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 179

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.8 bits (198), Expect = 9e-20
 Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 7/152 (4%)

Query: 20  VVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKN----VIFTVWDVGGQEKLR 75
           V+ +GL  +GKT +  +L  G+   T  +I  +    +  N     +  +   G +    
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 76  PLWRHYFNNTDGLIYVVDSLDRER-IGKAKQEFQAIIKDPFMLNSV--ILVFANKQDMKG 132
            L   + ++   +++VVDS   +R +    +    ++ D   L +   +L+  NKQD+  
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGD 164
           A +   + + L       R         L   
Sbjct: 123 AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 154

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (186), Expect = 2e-18
 Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 15/176 (8%)

Query: 9   FDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST--VPTIGFNVEK----VQYKNVI 62
           +DV F     +V+++G    GKT +L +   G  L+   + T+G +       V    V 
Sbjct: 3   YDVAF-----KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVK 57

Query: 63  FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL 122
             +WD  GQE+ R +   Y+ +   L+ + D  ++      +     I +      +++L
Sbjct: 58  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 117

Query: 123 VFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
           +               V    G    K        T A  G  +      +A  LK
Sbjct: 118 LGNKVDSAH----ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 1e-16
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 9/165 (5%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVP---TIGFNVEKVQY--KNVIFTVWDVGGQE 72
            ++V++G    GKT ++ +   G           + F ++ V+   + V   +WD  GQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           + R + + Y+ + + LI   D    E      +  + I +        +LV       + 
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE- 124

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
                EV +       + +  +   T A + D + +    LA  L
Sbjct: 125 ---RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (173), Expect = 2e-16
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 9/168 (5%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPT-----IGFNVEKVQYKNVIFTVWDVGGQE 72
            +VV++G    GK+ +L +    E      +           +V  K +   +WD  GQE
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           + R +   Y+    G + V D          ++  +  ++D    N VI++  NK D+  
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLK-ELRDHADSNIVIMLVGNKSDL-- 121

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
                 V         +        T AL    + E    + + +  +
Sbjct: 122 -RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 168

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 4e-16
 Identities = 29/165 (17%), Positives = 62/165 (37%), Gaps = 9/165 (5%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPT-----IGFNVEKVQYKNVIFTVWDVGGQE 72
            + +++G    GK+ +L++    + ++  P       G  + +V  + +   +WD  GQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           + R + R Y+    G + V D   R         +    ++    N+VI++  NK D+  
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKADL-- 121

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
                +V         +          A  G+ + +     A  +
Sbjct: 122 -EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.7 bits (169), Expect = 6e-16
 Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 6/168 (3%)

Query: 16  SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTI-----GFNVEKVQYKNVIFTVWDVGG 70
           + +++V+LG  A GK++I+ +    +                   +    V F +WD  G
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 71  QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
           QE+   L   Y+ N    + V D    +   KA+   + + +     + +I +  NK DM
Sbjct: 62  QERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK-DIIIALVGNKIDM 120

Query: 131 KGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
                  +V    G    + +      T A  G+ + +    +   + 
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 2e-13
 Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 9/168 (5%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEK-----VQYKNVIFTVWDVGGQ 71
           + ++V+LG  A GK++++ +   G+      +            +    V F +WD  GQ
Sbjct: 6   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65

Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
           E+   L   Y+      I V D  + E   +AK   +          ++++  +  +   
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK--ELQRQASPNIVIALSGNKADL 123

Query: 132 GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
                ++  E        +       T A     + E    +A  L +
Sbjct: 124 ANKRAVDFQE--AQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 2e-13
 Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 9/167 (5%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-----VLSTVPTIGFNVEKVQYKNVIFTVWDVGGQE 72
            + +++G    GK+ +L +           L+     G  +  +  K +   +WD  GQE
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
             R + R Y+    G + V D   RE         +   +     N VI++  NK D++ 
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLES 122

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
                      G    +        T A     + E     A  +  
Sbjct: 123 RRDVKREE---GEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 166

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.7 bits (151), Expect = 5e-13
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 9/133 (6%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
            +++ G   +GKT++L  L    V  TV +    +    Y     T+ D  G  KLR   
Sbjct: 5   SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKL 63

Query: 79  RHYFNN----TDGLIYVVDSLDRER----IGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
             Y         GLI++VDS    +      +   +  +I +        IL+  NK ++
Sbjct: 64  SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 123

Query: 131 KGAMTPMEVCEGL 143
             A  P ++ + L
Sbjct: 124 FTARPPSKIKDAL 136

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 2e-12
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 7/162 (4%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQ----YKNVIFTVWDVGGQE 72
           E +VV+LG    GK+ +  +   G  +        +  + +        +  + D  G E
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           +   +   Y  N  G I V   ++++     K     II+        +++  NK D+  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL-- 120

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174
             +  EV    G    +        T A     + E    + 
Sbjct: 121 -ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 2e-12
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 9/167 (5%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY-----KNVIFTVWDVGGQE 72
            +VV+LG    GKT+++ +    +      T        +      K V   +WD  GQE
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           +   L   Y+ +++G I V D  D +   K K   + + K       + +V       K 
Sbjct: 64  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
               ++  E       ++       T A +  G+ E    L   + E
Sbjct: 124 RHVSIQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.8 bits (138), Expect = 2e-11
 Identities = 23/169 (13%), Positives = 51/169 (30%), Gaps = 5/169 (2%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVEKVQY----KNVIFTVWDVGGQE 72
           ++V++LG    GKT+++ +    +       TIG +    +     + V   +WD  GQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           + + L   ++   D  + V D                 +      +     F    +   
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
                   +    +           T A +   + +    +A    +  
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 171

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.6 bits (130), Expect = 3e-10
 Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 9/167 (5%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVP-----TIGFNVEKVQYKNVIFTVWDVGGQ 71
           E++V +LG    GK++I+++         +      +      + Q +   F +WD  G 
Sbjct: 4   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 63

Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
           E+ R L   Y+  +   I V D    E     K   + + +       V +         
Sbjct: 64  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 123

Query: 132 GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
                    +        +       T A     + E    ++  + 
Sbjct: 124 VREVMERDAKDYA----DSIHAIFVETSAKNAININELFIEISRRIP 166

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 5e-10
 Identities = 31/167 (18%), Positives = 61/167 (36%), Gaps = 9/167 (5%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLST-VPTIGFNVEKVQY----KNVIFTVWDVGGQEK 73
           ++V LG  + GKT+++ +       +T   TIG +          + +   +WD  GQE+
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
            R L   Y  ++   + V D  +     +  +    +  +    + +I++  NK D+   
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADK 120

Query: 134 MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 180
                          K        T A  G  + +    +A+ L  M
Sbjct: 121 RQVSIEEGE---RKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 164

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 53.4 bits (127), Expect = 6e-10
 Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 7/164 (4%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFN----VEKVQYKNVIFTVWDVGGQEKL 74
           +V+M+G    GK+ +  +    E +        +       +  + V   + D  GQE  
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134
             +  +YF + +G + V    + E         + I++     N   L+  NK D++   
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-K 124

Query: 135 TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
             + V E     D  N  +    T A     + +    L   ++
Sbjct: 125 RQVSVEEAKNRADQWNVNYVE--TSAKTRANVDKVFFDLMREIR 166

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 3e-09
 Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 11/164 (6%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGE-----VLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK 73
           +V++LG    GK++++ +    +       +          +V    V   +WD  GQE+
Sbjct: 8   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67

Query: 74  LRPLWRHYFNNTDGLI---YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 130
            R L   ++  +D  +    V DS   + +   K+EF          +   ++  NK D+
Sbjct: 68  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 127

Query: 131 KGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174
                  E  E        N  +    T A     +    +   
Sbjct: 128 SERQVSTE--EAQAWCR-DNGDYPYFETSAKDATNVAAAFEEAV 168

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 8e-09
 Identities = 24/168 (14%), Positives = 59/168 (35%), Gaps = 8/168 (4%)

Query: 16  SEMRVVMLGLDAAGKTTILYKL----HIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQ 71
           +E ++V++G    GK+ +  +L     + E   T+         +  +  +  + D  GQ
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61

Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 131
           E+   +   Y    +G + V    + +      Q  + I +     +  +++  NK D+ 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121

Query: 132 GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
                    +       ++       T A    G+ +    L   +++
Sbjct: 122 ARTVESRQAQ----DLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (118), Expect = 1e-08
 Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 10/162 (6%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGF-----NVEKVQYKNVIFTVWDVGGQE 72
           +++V++G  A GK++++ +   G                   +V  ++V   +WD  GQE
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           +   + + Y+      + V  + DRE         +       + +    +  NK D+  
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWRE--KVVAEVGDIPTALVQNKIDL-- 118

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174
            +    +         K  K     T   +   + E   +LA
Sbjct: 119 -LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 159

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 3e-08
 Identities = 29/177 (16%), Positives = 55/177 (31%), Gaps = 17/177 (9%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVEKVQY---KNVIFTVWDVGGQEK 73
           ++ V++G  A GKT +L      +     VPT+  N         +     ++D  GQE 
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
              L    +  TD  +     +        K+++           +  L+   + D++  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWV-PEITHHCPKTPFLLVGTQIDLRDD 122

Query: 134 MTPMEVC-----------EGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
            + +E                 L        +++   AL   GL    D       E
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVE-CSALTQKGLKNVFDEAILAALE 178

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 4e-08
 Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 6/126 (4%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFN-----VEKVQYKNVIFTVWDVGGQEK 73
           +++++G    GKT + Y+   G                    +  + +   +WD  GQE+
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63

Query: 74  LRPLWR-HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
            R     HY+ N   +++V D  +           +   +     +   ++  NK D++ 
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 123

Query: 133 AMTPME 138
           A+    
Sbjct: 124 AIQVPT 129

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 6e-08
 Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 12/164 (7%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVEKVQYK----NVIFTVWDVGGQEK 73
           ++V++G    GKTT + +   GE     V T+G  V  + +      + F VWD  GQEK
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
              L   Y+      I + D   R          + +++     N  I++  NK D+K  
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDR 122

Query: 134 MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
               +          + +        A       +   WLA  L
Sbjct: 123 KVKAKSIV-----FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.1 bits (113), Expect = 6e-08
 Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 10/171 (5%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTV-PTIG-----FNVEKVQYKNVIFTVWDVGGQ 71
           ++V++LG    GKT+++++    +       TIG       V     K     VWD  GQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN---SVILVFANKQ 128
           E+ + L   ++   D  + V D  +       K      +    + +      ++  NK 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 129 DMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
           D + +   +       L            T A     +    + +A +  +
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSALQ 172

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 7e-08
 Identities = 23/167 (13%), Positives = 56/167 (33%), Gaps = 7/167 (4%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY----KNVIFTVWDVGGQEKL 74
           ++V++G    GK+ +  +      +S       +                + D  GQE+ 
Sbjct: 8   KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF 67

Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134
             +   Y     G + V    DR+   +  + F  I++     +  +++  NK D++   
Sbjct: 68  GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQR 127

Query: 135 TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
                      F   +   + +   A     + E  + L   +++ +
Sbjct: 128 QVPRSEA--SAFGASHHVAYFE-ASAKLRLNVDEAFEQLVRAVRKYQ 171

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 1e-07
 Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQE 72
           E ++V+LG    GK+ +  +   G  V    PTI  +     +V  +  +  + D  G E
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           +   +   Y  N  G   V     +      +   + I++     +  +++  NK D++ 
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
                +           N  +    + A     + E    L   + 
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLE--SSAKSKINVNEIFYDLVRQIN 166

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 6/167 (3%)

Query: 17  EMRVVMLGLDAAGKTTILYKL----HIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQE 72
           + RV + G    GK++++ +          + TV      V           + D  G  
Sbjct: 2   DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           +   + R   +     I V     R+ + + K  ++ I +    + S+ ++    +  + 
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
               ++  E   L       +    T A     + E    L +  K 
Sbjct: 122 PSREVQSSEAEALARTWKCAFME--TSAKLNHNVKELFQELLNLEKR 166

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 4e-07
 Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 17/173 (9%)

Query: 17  EMRVVMLGLDAAGKTTILYKL----HIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQE 72
            ++ V++G  A GKT +L         GE + TV         V  K V   +WD  GQE
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
               L    +  TD  +     +        + ++   ++     N+ I++   K D++ 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRD 123

Query: 133 A-----------MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174
                       +TP+   +GL +        +++   AL   GL    D   
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE-CSALTQRGLKTVFDEAI 175

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 5e-07
 Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 17/172 (9%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFN---VEKVQYKNVIFTVWDVGGQEK 73
            ++V++G  A GKT +L      +     VPT+  N     +V  K V   +WD  G E 
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM--- 130
              L    + +TD ++        + +    +++   +K  F  N  I++  NK+D+   
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRND 121

Query: 131 --------KGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174
                   K    P++  EG  + +      +++   A   DG+ E  +   
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYME-CSAKTKDGVREVFEMAT 172

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 1e-06
 Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 8/168 (4%)

Query: 17  EMRVVMLGLDAAGKTTILYKL----HIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQE 72
             ++V++G    GK+ +  +      + +   T+        ++  +  I  V D  GQE
Sbjct: 4   TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           +   +   Y    DG + V    D+       +  Q I++     +  +++ ANK D+  
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL-- 121

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGD-GLYEGLDWLASTLKE 179
            M   +V    G             T A      + +    L   +++
Sbjct: 122 -MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 19/128 (14%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 18  MRVVMLGLDAAGKTTILYKLH----IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEK 73
            ++V++G    GKT +L+           + TV        ++  + +  ++WD  G   
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
              +    + ++D ++   D    E +    ++++  I++      ++LV   K D++  
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV-GCKSDLRTD 121

Query: 134 MTPMEVCE 141
           ++ +    
Sbjct: 122 VSTLVELS 129

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.1 bits (100), Expect = 4e-06
 Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 18/173 (10%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVI-----FTVWDVGGQEK 73
            V ++G   AGK+++L  +         P     +        +     FT+ D+ G  +
Sbjct: 3   DVGLVGYPNAGKSSLLAAM-TRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61

Query: 74  LRPLWRHYFNNT-------DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 126
                +               L+YV+D+ D           +    DP +L    LV  N
Sbjct: 62  GASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALN 121

Query: 127 KQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 179
           K D+        + +      L      +    AL G GL    + L + ++ 
Sbjct: 122 KVDLLEEEAVKALAD-----ALAREGLAVLPVSALTGAGLPALKEALHALVRS 169

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 15/165 (9%), Positives = 53/165 (32%)

Query: 17  EMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP 76
           E+R+ +LG   +GK++++++   G       T     +K    +    +  +  +     
Sbjct: 5   ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 64

Query: 77  LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP 136
                + +    ++ ++  +  +         + ++        + +   +  +  +   
Sbjct: 65  AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPR 124

Query: 137 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
           +             ++     TCA  G  +      +A  +  +R
Sbjct: 125 VVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLR 169

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 27/173 (15%), Positives = 58/173 (33%), Gaps = 13/173 (7%)

Query: 16  SEMRVVMLGLDAAGKTTILYKL----HIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQ 71
           +E+++ + G    GK+ ++ +      I E   T+ +   +   +  + V   + D  GQ
Sbjct: 1   AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQ 60

Query: 72  EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN--KQD 129
           E        +    +G + V D  DR    +       + +     N  +++  N    D
Sbjct: 61  ED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 119

Query: 130 MKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG-LYEGLDWLASTLKEMR 181
               ++  E  +                  A  G+G + E    L   ++  R
Sbjct: 120 HSRQVSTEEGEK-----LATELACAFYECSACTGEGNITEIFYELCREVRRRR 167

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 3e-05
 Identities = 16/163 (9%), Positives = 40/163 (24%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW 78
           +V++LG    GK+ +       E        G   ++    +       V    +     
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62

Query: 79  RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 138
               +        V        G  ++  +  ++      +  +      +    +   E
Sbjct: 63  WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 122

Query: 139 VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
           V    G             T A     +    + +   ++  R
Sbjct: 123 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR 165

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 21/167 (12%), Positives = 54/167 (32%), Gaps = 7/167 (4%)

Query: 19  RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFN----VEKVQYKNVIFTVWDVGGQEKL 74
           R+V++G    GK+ +  +      ++       +       +  +     + D  GQE+ 
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEF 66

Query: 75  RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM 134
             +   Y    +G + V    DR    +  +  + I++        +++  NK D+    
Sbjct: 67  GAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQR 126

Query: 135 TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 181
              +          +  K       A     + +    L   +++ +
Sbjct: 127 QVTQEEG---QQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQ 170

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 4e-05
 Identities = 21/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%)

Query: 17  EMRVVMLGLDAAGKTTILYKL----HIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQE 72
             ++ +LG  + GK+++  +      +     T+      +  V  +     + D  GQ+
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 73  KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 132
           +     + Y  + +G I V      +     K     ++     +   I++  NK+D+  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH- 122

Query: 133 AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 178
            M  +   E             ++ + A +     +    +    +
Sbjct: 123 -MERVISYEEGKALAESWNAAFLE-SSAKENQTAVDVFRRIILEAE 166

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 17/172 (9%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGE-VLSTVPTIGFNVEKVQY---KNVIFTVWDVGGQEK 73
           ++ V++G  A GKT +L            VPT+  +         K  +  ++D  GQE 
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69

Query: 74  LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 133
              L    +  TD  +     ++       K+E+   +K+ +  N   L+   + D++  
Sbjct: 70  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAPNVPFLLIGTQIDLRDD 128

Query: 134 MTPMEVC-----------EGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 174
              +              +G  L        +++   AL   GL    D   
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE-CSALTQKGLKTVFDEAI 179

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 27/182 (14%), Positives = 53/182 (29%), Gaps = 23/182 (12%)

Query: 20  VVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLW- 78
           ++  G    GK+T++Y+L  G+ +      G   + ++ +     + D+ G   +  L  
Sbjct: 3   IIFAGRSNVGKSTLIYRL-TGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61

Query: 79  --------------RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN------ 118
                              N D  + VVD      I K  ++   I  D           
Sbjct: 62  EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121

Query: 119 -SVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 177
              I+       +K     +          L           A  GD +    + +   +
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 181

Query: 178 KE 179
           +E
Sbjct: 182 RE 183

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 26/169 (15%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGF----NVEKVQYKNVIFTVWDVGGQEK 73
           +R+V++G    GK+T+L +L   +        G       E++  + ++F + D  G   
Sbjct: 1   LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 74  LRPLWRHYF---------NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF 124
                                D +++V+D+         K   +   K   ++       
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVI------ 114

Query: 125 ANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 173
            NK D+   +   E+   LG         H+    ALKG+GL +  + +
Sbjct: 115 -NKVDVVEKINEEEIKNKLGTD------RHMVKISALKGEGLEKLEESI 156

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 20/165 (12%), Positives = 47/165 (28%), Gaps = 10/165 (6%)

Query: 18  MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL 77
           M+VV+ G   AGK+++L  L   E        G   + ++           G    +   
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHI-----HIDGMPLHIIDT 56

Query: 78  WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 137
                 + +     ++   +E     +  F         ++   +       +   +   
Sbjct: 57  AGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPIT 116

Query: 138 EVCEGLGLFDLKNRKWHIQG-----TCALKGDGLYEGLDWLASTL 177
            V     +         + G       A  G+G+    + L  ++
Sbjct: 117 VVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.98
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.98
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.98
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.97
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.96
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.95
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.94
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.94
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.93
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.93
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.92
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.92
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.91
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.91
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.89
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.89
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.85
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.82
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.81
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.81
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.81
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.8
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.78
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.76
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.74
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.73
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.72
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.66
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.63
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.62
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.55
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.55
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.46
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.19
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.15
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.13
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.08
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.08
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.07
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.0
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.91
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.74
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.4
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.32
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.31
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.27
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.25
d1okkd2	207	GTPase domain of the signal recognition particle r	98.16
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.06
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.96
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.92
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.74
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.67
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.66
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.6
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.59
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.59
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.54
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.52
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.49
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.45
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.44
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.43
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.41
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.4
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.37
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.35
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.33
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.31
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.26
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.26
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.22
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.18
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.18
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.18
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.17
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.15
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.13
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.1
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.09
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.08
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.07
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.06
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.05
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.04
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.04
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.03
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.03
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.02
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.01
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.0
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.0
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.99
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.98
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.97
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.96
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.95
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.95
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.95
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.94
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.93
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.93
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.91
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.88
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.87
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.87
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.85
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.84
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.84
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.83
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.82
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.81
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.8
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.8
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.79
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.78
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.78
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.76
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.76
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.75
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.75
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.7
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.67
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.64
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.57
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.57
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.56
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.56
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.44
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.42
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.41
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.4
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.38
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.36
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.34
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.33
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.33
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.33
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.27
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.24
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.2
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.17
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.09
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.09
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.01
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.96
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.78
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.72
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.7
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.67
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.66
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.52
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.47
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.45
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.42
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.32
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.18
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.17
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.15
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.1
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.09
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.03
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.98
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.92
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.89
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.87
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.81
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.8
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.8
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.78
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.72
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.67
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.51
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.48
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.42
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.42
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.41
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.36
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.35
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.34
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.14
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	94.08
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.86
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.8
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.61
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.53
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.5
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.29
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.1
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.02
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.01
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.82
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.65
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.39
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.32
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.9
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	91.61
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.51
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.5
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	90.69
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.55
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	88.81
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	88.57
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	88.52
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	87.66
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	86.47
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	85.84
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	85.47
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	85.09
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	84.93
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	84.02
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	83.83
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	83.74
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.76
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	82.34
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	82.23
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	82.21
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.87
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	80.69
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.61

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=100.00  E-value=1.2e-38  Score=222.42  Aligned_cols=180  Identities=49%  Similarity=0.935  Sum_probs=160.2

Q ss_pred             chhHHHHhhh-hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHh
Q 029446            2 GQAFRKLFDV-FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   80 (193)
Q Consensus         2 ~~~~~~~~~~-~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (193)
                      |..+.++++. +...+.+||+++|.+|||||||++++..+.+....||.+..........+.+.+||+||++.++..+..
T Consensus         1 ~~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (182)
T d1moza_           1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC   80 (182)
T ss_dssp             CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGG
T ss_pred             ChhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHh
Confidence            4567778765 467788999999999999999999999988887789999999999999999999999999999999999


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      ++++++++++|+|++++.++.+...|+...+......+.|+++|+||+|+.+....+++.+.++...++..++++++|||
T Consensus        81 ~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA  160 (182)
T d1moza_          81 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA  160 (182)
T ss_dssp             TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred             hhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence            99999999999999999999999999988887766678999999999999988888899999988878888899999999


Q ss_pred             ccCCCHHHHHHHHHHHHHhhh
Q 029446          161 LKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      ++|+||++++++|.+.+.+++
T Consensus       161 ~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         161 IKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             GGTBTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHcC
Confidence            999999999999999997754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=100.00  E-value=1.9e-37  Score=215.17  Aligned_cols=166  Identities=42%  Similarity=0.802  Sum_probs=152.2

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      ..+++.+||+++|++|||||||++++.++.+..+.++.+.+...+...++.+.+||++|++.++..+..+++.+|++++|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   90 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV   90 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEe
Confidence            35678899999999999999999999999998888899999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      +|++++.++.++..++..+.......++|+++|+||+|+.+.....++.+.+....++...+++++|||++|+|++++|+
T Consensus        91 ~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~  170 (176)
T d1fzqa_          91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN  170 (176)
T ss_dssp             EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred             eccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999888776667899999999999998888888888887777777888999999999999999999


Q ss_pred             HHHHHH
Q 029446          172 WLASTL  177 (193)
Q Consensus       172 ~l~~~~  177 (193)
                      +|.+++
T Consensus       171 ~l~~~i  176 (176)
T d1fzqa_         171 WVCKNV  176 (176)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            998753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=100.00  E-value=2.6e-37  Score=213.96  Aligned_cols=169  Identities=60%  Similarity=1.099  Sum_probs=154.6

Q ss_pred             hhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446            9 FDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus         9 ~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      +++....+.+||+++|++|||||||++++.++.+....+|.+............+.+||+||+..++..+..++++++++
T Consensus         4 ~~~~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   83 (173)
T d1e0sa_           4 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL   83 (173)
T ss_dssp             HHHHHTTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEE
T ss_pred             hhhhhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceE
Confidence            34445678899999999999999999999999888778899999999989999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      ++|+|+++.+++.++..|+...++.....+.|+++|+||+|+.+.....++...+++..++..++++++|||++|+||++
T Consensus        84 i~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_          84 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence            99999999999999999999988766667899999999999998888888988888877888889999999999999999


Q ss_pred             HHHHHHHHH
Q 029446          169 GLDWLASTL  177 (193)
Q Consensus       169 ~~~~l~~~~  177 (193)
                      +|++|.+++
T Consensus       164 ~~~~l~~~~  172 (173)
T d1e0sa_         164 GLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999998875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=2.8e-37  Score=212.21  Aligned_cols=164  Identities=43%  Similarity=0.825  Sum_probs=150.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (193)
                      +.+||+++|++|||||||+++|.+..+..+.||.+.....+..+.+.+.+||+||++.++..+..+++.++++++|+|++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   80 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA   80 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecc
Confidence            47899999999999999999999998888889999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHH
Q 029446           96 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  175 (193)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  175 (193)
                      +..++.+...++...+......+.|+++|+||+|+.+.....+..+.+....++...+++++|||++|+|+++++++|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  160 (165)
T d1ksha_          81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD  160 (165)
T ss_dssp             CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999888877666678999999999999887777888777776666777889999999999999999999999


Q ss_pred             HHHh
Q 029446          176 TLKE  179 (193)
Q Consensus       176 ~~~~  179 (193)
                      ++.+
T Consensus       161 ~i~~  164 (165)
T d1ksha_         161 DISS  164 (165)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8865

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=7.9e-37  Score=209.79  Aligned_cols=161  Identities=30%  Similarity=0.627  Sum_probs=149.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (193)
                      ++||+++|++|+|||||+++|.++.+. .+.||.+.++..+....+.+.+||+||+..+...+..++.+++++++|+|++
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   81 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETT
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhcccccc
Confidence            689999999999999999999998886 5679999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHH
Q 029446           96 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  175 (193)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  175 (193)
                      +..++++...++..+.+....++.|+++|+||.|+.+....+++.+.++...++..+++++++||++|+|++++|++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~  161 (164)
T d1zd9a1          82 DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ  161 (164)
T ss_dssp             CGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHH
Confidence            99999999999999988766678999999999999888788889999888888888999999999999999999999988


Q ss_pred             HH
Q 029446          176 TL  177 (193)
Q Consensus       176 ~~  177 (193)
                      ++
T Consensus       162 ~~  163 (164)
T d1zd9a1         162 HS  163 (164)
T ss_dssp             TC
T ss_pred             cc
Confidence            64

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=209.54  Aligned_cols=160  Identities=16%  Similarity=0.126  Sum_probs=117.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (193)
                      |||+++|++|+|||||++++.+..+....++.+..+. .+..  ..+.+.+||++|+++++..+..+++++|++++|||+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~   81 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV   81 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence            7999999999999999999999887666666665553 3333  468899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHH
Q 029446           95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  172 (193)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  172 (193)
                      +++.+++++..|+.++.........|+++|+||+|+.+...  ..+. +.+    ++..+++|++|||++|.||+++|+.
T Consensus        82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~Sak~~~~v~~~f~~  156 (168)
T d2gjsa1          82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG-RAC----AVVFDCKFIETSAALHHNVQALFEG  156 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHH-HHH----HHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred             cccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHH-HHH----HHhcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999987655556789999999999876422  2221 111    1334558999999999999999999


Q ss_pred             HHHHHHhhhc
Q 029446          173 LASTLKEMRA  182 (193)
Q Consensus       173 l~~~~~~~~~  182 (193)
                      |.+.+..++.
T Consensus       157 l~~~i~~~~~  166 (168)
T d2gjsa1         157 VVRQIRLRRD  166 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9998876653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-36  Score=206.39  Aligned_cols=166  Identities=16%  Similarity=0.215  Sum_probs=132.5

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeE-EEEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      ++.+.+||+++|++|||||||++++.++.+.. +.+|..... ..+..  ..+.+.+||++|++++...+..+++++|++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            45678999999999999999999999988874 445544332 23333  357899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      ++|||++++.+|+.+..|+..+.+.....+.|+++|+||+|+..... ..+....+    ++..+++|++|||++|.||+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~----~~~~~~~~~e~Sak~g~gv~  157 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF----GASHHVAYFEASAKLRLNVD  157 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHH----HHHTTCEEEECBTTTTBSHH
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHH----HHhcCCEEEEEeCCCCcCHH
Confidence            99999999999999999999887654446889999999999875421 11112222    12345689999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 029446          168 EGLDWLASTLKEMRA  182 (193)
Q Consensus       168 ~~~~~l~~~~~~~~~  182 (193)
                      ++|+.|++.+.+.+.
T Consensus       158 e~f~~l~~~i~k~~~  172 (173)
T d2fn4a1         158 EAFEQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999876653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=6.6e-36  Score=205.91  Aligned_cols=158  Identities=19%  Similarity=0.236  Sum_probs=128.0

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      -+||+++|++|||||||+++++.+.+. .+.||.+.++.. +..  ..+.+.+||++|++++...+..+++++|++++|+
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   83 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF   83 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEe
Confidence            479999999999999999999998876 567888877643 333  4678999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      |++++.+++.+..|+.++.+....++.|+++|+||+|+.+..  ..++... +    ++..++++++|||++|.||+++|
T Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~Sak~g~gv~e~f  158 (168)
T d1u8za_          84 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-R----ADQWNVNYVETSAKTRANVDKVF  158 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTCEEEECCTTTCTTHHHHH
T ss_pred             eccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHH-H----HHHcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999988765455789999999999986542  2222221 1    23345689999999999999999


Q ss_pred             HHHHHHHHh
Q 029446          171 DWLASTLKE  179 (193)
Q Consensus       171 ~~l~~~~~~  179 (193)
                      +.|++.+..
T Consensus       159 ~~l~~~i~~  167 (168)
T d1u8za_         159 FDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHC
Confidence            999998854

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.4e-35  Score=203.27  Aligned_cols=159  Identities=19%  Similarity=0.324  Sum_probs=129.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      +.|||+++|++|+|||||++++.++.+. .+.++.+.+...  +..  ..+.+.+|||||++++...+..+++++|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            5689999999999999999999988876 456677766543  333  35789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      |||+++++++.....|+...... .....|+++|+||+|+.+...  .++. +.+    ++..+++|++|||++|+||++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~-~~~----~~~~~~~~~e~Sak~g~gv~e  157 (169)
T d3raba_          84 MYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERG-RQL----ADHLGFEFFEASAKDNINVKQ  157 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHH-HHH----HHHHTCEEEECBTTTTBSHHH
T ss_pred             EEECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhh-HHH----HHHcCCEEEEecCCCCcCHHH
Confidence            99999999999999988877553 346789999999999876432  2222 222    123456899999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029446          169 GLDWLASTLKEM  180 (193)
Q Consensus       169 ~~~~l~~~~~~~  180 (193)
                      +|++|++.+.++
T Consensus       158 ~f~~l~~~i~ek  169 (169)
T d3raba_         158 TFERLVDVICEK  169 (169)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhC
Confidence            999999988653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-35  Score=203.28  Aligned_cols=158  Identities=23%  Similarity=0.330  Sum_probs=129.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      -.|||+++|++|+|||||+++++++.+. .+.||++.++.....    ..+.+.+||++|+..+...+..++++++++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            3689999999999999999999999877 457888887765444    46899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      |||++++++|+++..|+..+.+..  .+.|+++|+||+|+.......+..     ..++..+++|++|||++|+||+++|
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~-----~~~~~~~~~~~e~Sak~~~~v~e~f  154 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPF  154 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSH-----HHHSSCSSEEEEEBTTTTBTTTHHH
T ss_pred             ccccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHH-----HHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999887643  579999999999998764333211     1234566799999999999999999


Q ss_pred             HHHHHHHHhh
Q 029446          171 DWLASTLKEM  180 (193)
Q Consensus       171 ~~l~~~~~~~  180 (193)
                      ++|++.+.+.
T Consensus       155 ~~l~~~l~~~  164 (170)
T d1i2ma_         155 LWLARKLIGD  164 (170)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHccC
Confidence            9999988643

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=100.00  E-value=2.3e-33  Score=194.49  Aligned_cols=175  Identities=46%  Similarity=0.832  Sum_probs=153.8

Q ss_pred             chhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhh
Q 029446            2 GQAFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHY   81 (193)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   81 (193)
                      |.+|.+++ .....+.+||+|+|.+|||||||++++.++.+....++.+...........++.+||+++++..+..+..+
T Consensus         1 ~~~~~~~~-~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   79 (177)
T d1zj6a1           1 GILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY   79 (177)
T ss_dssp             CHHHHHHH-HHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHH
T ss_pred             ChhHHHHH-HHhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhh
Confidence            56788888 45557899999999999999999999999998877788888888888899999999999999999999999


Q ss_pred             hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccc
Q 029446           82 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      +..++++++++|.++..+++....++..........+.|+++|+||+|+......+++.+.+....++..++++++|||+
T Consensus        80 ~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~  159 (177)
T d1zj6a1          80 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL  159 (177)
T ss_dssp             HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             hccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCC
Confidence            99999999999999999999988877777766666789999999999998888888888888877778888999999999


Q ss_pred             cCCCHHHHHHHHHHHH
Q 029446          162 KGDGLYEGLDWLASTL  177 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~  177 (193)
                      +|+|+++++++|.+++
T Consensus       160 tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         160 TGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             TTBTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999999886

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-35  Score=201.73  Aligned_cols=160  Identities=17%  Similarity=0.221  Sum_probs=130.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEEE-E--EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKV-Q--YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~-~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      +.|||+++|++|||||||++++..+.+.+ +.+|.+..+... .  ...+.+.+||++|+..+...+..+++++|++++|
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            67999999999999999999999999874 567777555432 2  2568899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      ||++++.+|+++..|+..+.+....++.|+|+|+||+|+...... .+....+..   +..+++|++|||++|+||+++|
T Consensus        82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~e~Sak~g~gv~e~F  158 (167)
T d1c1ya_          82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR---QWCNCAFLESSAKSKINVNEIF  158 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH---HTTSCEEEECBTTTTBSHHHHH
T ss_pred             eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH---HhCCCEEEEEcCCCCcCHHHHH
Confidence            999999999999999999876545578999999999998764321 111111110   1234689999999999999999


Q ss_pred             HHHHHHHH
Q 029446          171 DWLASTLK  178 (193)
Q Consensus       171 ~~l~~~~~  178 (193)
                      +.|++.+.
T Consensus       159 ~~l~~~i~  166 (167)
T d1c1ya_         159 YDLVRQIN  166 (167)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99998874

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-35  Score=202.77  Aligned_cols=158  Identities=23%  Similarity=0.315  Sum_probs=123.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      +.|||+++|++|||||||++++.++.+. .+.||.+........    ....+.+||++|+.++...+..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            5799999999999999999999999887 456777766654333    35889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      |||++++++|+++..|+..+... .....|+++|+||+|+....  ..++..+ +    ++..++++++|||++|.||++
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~-~----a~~~~~~~~e~Sak~~~~v~e  155 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAES-Y----AESVGAKHYHTSAKQNKGIEE  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEEEBTTTTBSHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccc-cccccceeeeccccccccccccchHHHHH-H----HHHcCCeEEEEecCCCcCHHH
Confidence            99999999999999999877543 23578999999999987642  2333222 1    234456899999999999999


Q ss_pred             HHHHHHHHHHh
Q 029446          169 GLDWLASTLKE  179 (193)
Q Consensus       169 ~~~~l~~~~~~  179 (193)
                      +|++|++.+.+
T Consensus       156 ~F~~l~~~i~~  166 (167)
T d1z08a1         156 LFLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999998864

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=202.57  Aligned_cols=158  Identities=20%  Similarity=0.272  Sum_probs=128.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      +.|||+++|++|||||||+++++++.+.+ +.+|.+..+.. +..  ..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            67999999999999999999999998774 55777654432 222  457899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      ||++++.++.++..|+..+.......+.|+++|+||+|+.+...  .++. ..+    ++..++++++|||++|.||+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~e~Sak~g~~i~e~  156 (167)
T d1kaoa_          82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEG-RAL----AEEWGCPFMETSAKSKTMVDEL  156 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHH-HHH----HHHHTSCEEEECTTCHHHHHHH
T ss_pred             eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHH-HHH----HHHcCCeEEEECCCCCcCHHHH
Confidence            99999999999999999887655557899999999999876422  2221 111    1233457999999999999999


Q ss_pred             HHHHHHHHH
Q 029446          170 LDWLASTLK  178 (193)
Q Consensus       170 ~~~l~~~~~  178 (193)
                      |+.|++.+.
T Consensus       157 f~~i~~~i~  165 (167)
T d1kaoa_         157 FAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            999998764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-35  Score=200.54  Aligned_cols=161  Identities=17%  Similarity=0.226  Sum_probs=127.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      ..|||+++|++|||||||++++.++.+. .+.||.+.... .+..  ..+.+.+||++|+.++...+..+++.+|++++|
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            4589999999999999999999998876 45677765443 2333  357899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      +|++++.+++.+..|+..+.........|+|+|+||+|+....  ..++.. .+    ++..+++|++|||++|.||+++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~~~~i~e~  158 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQ-QL----ARQLKVTYMEASAKIRMNVDQA  158 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHH-HH----HHHTTCEEEECBTTTTBSHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHH-HH----HHHcCCEEEEEcCCCCcCHHHH
Confidence            9999999999999999888765445689999999999987652  222222 22    2345568999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 029446          170 LDWLASTLKEMR  181 (193)
Q Consensus       170 ~~~l~~~~~~~~  181 (193)
                      |+.|++.+.+.+
T Consensus       159 f~~l~~~i~k~~  170 (171)
T d2erya1         159 FHELVRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999986543

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-34  Score=197.00  Aligned_cols=160  Identities=17%  Similarity=0.248  Sum_probs=132.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEEEE---EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEKVQ---YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~---~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      ++|||+++|++|||||||+++|+++.+.. +.++.+..+....   ...+.+.+||++|++.+...+..+++.++++++|
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            46899999999999999999999998874 5677776654322   2467899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      +|++++.+++++..|+..+.+.....+.|+++|+||+|+.......+..+.+.    +..++++++|||++|+||+++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gi~e~f~  157 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA----RSYGIPYIETSAKTRQGVEDAFY  157 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHH----HHhCCeEEEEcCCCCcCHHHHHH
Confidence            99999999999999999887655556799999999999977543333222221    23455799999999999999999


Q ss_pred             HHHHHHHh
Q 029446          172 WLASTLKE  179 (193)
Q Consensus       172 ~l~~~~~~  179 (193)
                      .|++.+.+
T Consensus       158 ~i~~~i~~  165 (166)
T d1ctqa_         158 TLVREIRQ  165 (166)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-35  Score=203.15  Aligned_cols=159  Identities=19%  Similarity=0.244  Sum_probs=127.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEE-EE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKV-QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~-~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      ..|||+++|++|||||||+++|+++.+. .+.||.+..+... ..  ..+.+.+||++|++.+...+..+++++|++++|
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            3689999999999999999999998877 4568888665432 22  347889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      ||++++++++++..|+..+... ....+.|+++|+||+|+.+..  ..++. +.+    ++..++++++|||++|+||++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~-~~~----~~~~~~~~~e~Sak~~~~v~e  155 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEA-EAL----ARTWKCAFMETSAKLNHNVKE  155 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHH-HHH----HHHHTCEEEECBTTTTBSHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHH-HHH----HHHcCCeEEEEcCCCCcCHHH
Confidence            9999999999999999887652 234678999999999986542  22222 222    233456899999999999999


Q ss_pred             HHHHHHHHHHh
Q 029446          169 GLDWLASTLKE  179 (193)
Q Consensus       169 ~~~~l~~~~~~  179 (193)
                      +|+.|++.+.+
T Consensus       156 ~f~~l~~~~~~  166 (171)
T d2erxa1         156 LFQELLNLEKR  166 (171)
T ss_dssp             HHHHHHHTCCS
T ss_pred             HHHHHHHHHHH
Confidence            99999986643

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=100.00  E-value=3.4e-33  Score=190.29  Aligned_cols=160  Identities=63%  Similarity=1.140  Sum_probs=145.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCCh
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   97 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   97 (193)
                      +||+++|++|||||||++++.++.+....++........+...+.+.+||++|...+...+..++..++++++++|.+++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence            58999999999999999999998887666666666777788899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446           98 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      .++.....++.+..........|+++++||.|+.+.....++........++..++++++|||++|+|++++|++|.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_          81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            99999999999998877677899999999999999888888888887777788889999999999999999999998864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-35  Score=202.00  Aligned_cols=159  Identities=15%  Similarity=0.184  Sum_probs=130.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      .+.+||+++|++|+|||||+++|.++.+. .+.||.+..+. .+..  ..+.+.+||++|++.+..++..++.++|++++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            46789999999999999999999988877 45788887754 2333  45788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      |||++++++|+.+..|+..+.+.....+.|+++|+||+|+....  ..++. +.+    ++..+++|++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~-~~~----a~~~~~~~~e~Sak~~~~v~~  156 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEG-KAL----AESWNAAFLESSAKENQTAVD  156 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHH-HHH----HHHHTCEEEECCTTCHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHH-HHH----HHHcCCEEEEEecCCCCCHHH
Confidence            99999999999999999998765445689999999999987542  23222 112    233455899999999999999


Q ss_pred             HHHHHHHHHH
Q 029446          169 GLDWLASTLK  178 (193)
Q Consensus       169 ~~~~l~~~~~  178 (193)
                      +|+.|+..+.
T Consensus       157 ~f~~li~~~~  166 (167)
T d1xtqa1         157 VFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999988764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-35  Score=202.93  Aligned_cols=156  Identities=22%  Similarity=0.334  Sum_probs=128.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      .+||+++|++|+|||||+++|.++.+. .+.+|.+.+......    ..+.+.+||++|+.++...+..++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            479999999999999999999988876 557888766554333    357899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      ||++++.+++++..|+.++....  .+.|+|+|+||+|+.++.  ..++. +.+    ++..+++|++|||++|.||+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~Sak~g~~v~e~  154 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEA-EGL----AKRLKLRFYRTSVKEDLNVSEV  154 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHH-HHH----HHHHTCEEEECBTTTTBSSHHH
T ss_pred             EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhh-HHH----HHHcCCEEEEeccCCCcCHHHH
Confidence            99999999999999998886542  578999999999987642  22222 222    2334568999999999999999


Q ss_pred             HHHHHHHHHh
Q 029446          170 LDWLASTLKE  179 (193)
Q Consensus       170 ~~~l~~~~~~  179 (193)
                      |+.|++.+.+
T Consensus       155 f~~l~~~~lq  164 (164)
T d1z2aa1         155 FKYLAEKHLQ  164 (164)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999988753

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.7e-35  Score=201.03  Aligned_cols=159  Identities=18%  Similarity=0.225  Sum_probs=130.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      .|||+++|++++|||||++++.++.+. .+.||.+..+.. +..  ..+.+.+||++|++.+...++.+++++|++++||
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~   83 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVY   83 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEec
Confidence            589999999999999999999998876 456777655533 233  4688999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCC-CHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGD-GLYEG  169 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~  169 (193)
                      |++++.+|+++..|+..+.+.....+.|+|+|+||+|+....  ..++. +.+    ++..+++|++|||+++. ||+++
T Consensus        84 d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~-~~~----~~~~~~~~~e~Sak~~~~nV~~~  158 (169)
T d1x1ra1          84 SVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQG-KEM----ATKYNIPYIETSAKDPPLNVDKT  158 (169)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHH-HHH----HHHHTCCEEEEBCSSSCBSHHHH
T ss_pred             ccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhH-HHH----HHHcCCEEEEEcCCCCCcCHHHH
Confidence            999999999999999998765445689999999999987752  22222 212    23344579999999886 99999


Q ss_pred             HHHHHHHHHhh
Q 029446          170 LDWLASTLKEM  180 (193)
Q Consensus       170 ~~~l~~~~~~~  180 (193)
                      |+.|++.+.++
T Consensus       159 F~~l~~~i~~~  169 (169)
T d1x1ra1         159 FHDLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999988653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-35  Score=200.83  Aligned_cols=159  Identities=21%  Similarity=0.280  Sum_probs=128.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      +.|||+++|++|||||||++++.++.+. .+.++.+.++..  +..  ..+.+.+|||||++.+...++.++++++++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            4689999999999999999999998876 445666655443  433  35789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      |+|++++.+++.+..|+..+.+. .....|+++|+||+|+.+...  .++. +.+    ++..++++++|||++|+||++
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~-~~~----~~~~~~~~~~~SAktg~gV~e  157 (171)
T d2ew1a1          84 TYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRA-EEF----SEAQDMYYLETSAKESDNVEK  157 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHH-HHH----HHHHTCCEEECCTTTCTTHHH
T ss_pred             eeecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHH-HHH----HHhCCCEEEEEccCCCCCHHH
Confidence            99999999999999999888664 335789999999999876422  2222 222    123445799999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029446          169 GLDWLASTLKEM  180 (193)
Q Consensus       169 ~~~~l~~~~~~~  180 (193)
                      +|..|++.+...
T Consensus       158 ~f~~l~~~l~~~  169 (171)
T d2ew1a1         158 LFLDLACRLISE  169 (171)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=198.63  Aligned_cols=155  Identities=20%  Similarity=0.319  Sum_probs=128.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      |||+++|++|||||||+++|.++.+. .+.++.+........    ..+.+.+||++|++.+...+..++.+++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            79999999999999999999998877 456777766654333    3588999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  170 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  170 (193)
                      |++++.+++++..|+..+.... ..+.|+++|+||+|+.+..  ..++. ..+    ++..+++|++|||++|+||+++|
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~e~SAk~g~~v~e~f  154 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEG-ERK----AKELNVMFIETSAKAGYNVKQLF  154 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHH-HHH----HHHTTCEEEECCTTTCTTHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHH-HHH----HHHcCCEEEEecCCCCcCHHHHH
Confidence            9999999999999999877643 3689999999999987532  22222 112    13345689999999999999999


Q ss_pred             HHHHHHHH
Q 029446          171 DWLASTLK  178 (193)
Q Consensus       171 ~~l~~~~~  178 (193)
                      +.|.+.+.
T Consensus       155 ~~i~~~l~  162 (164)
T d1yzqa1         155 RRVAAALP  162 (164)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhhC
Confidence            99998874

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=199.40  Aligned_cols=159  Identities=18%  Similarity=0.219  Sum_probs=126.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEE-E--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQ-Y--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~-~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      .+||+++|++|+|||||+++++++.+. .+.||.+..+.... .  ..+.+.+||++|+..+. .+..++++++++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            689999999999999999999999876 56788887765432 2  35789999999998885 4566789999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccccCCC-HHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG-LYEG  169 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~~  169 (193)
                      |++++.+++.+..|+..........+.|+++|+||+|+.++  ...++.. .+    ++..+++|++|||++|+| |+++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~-~~----a~~~~~~~~e~Saktg~gnV~e~  155 (168)
T d2atva1          81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGE-KL----ATELACAFYECSACTGEGNITEI  155 (168)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHH-HH----HHHHTSEEEECCTTTCTTCHHHH
T ss_pred             ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHH-HH----HHHhCCeEEEEccccCCcCHHHH
Confidence            99999999999887665544334468999999999998753  2222221 11    123455899999999985 9999


Q ss_pred             HHHHHHHHHhhh
Q 029446          170 LDWLASTLKEMR  181 (193)
Q Consensus       170 ~~~l~~~~~~~~  181 (193)
                      |..|.+.+.+++
T Consensus       156 F~~l~~~i~~~r  167 (168)
T d2atva1         156 FYELCREVRRRR  167 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999887654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-34  Score=199.12  Aligned_cols=165  Identities=21%  Similarity=0.311  Sum_probs=133.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEE--E--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQ--Y--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~--~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ++.+||+++|.+|||||||++++.++.+. .+.+|.+.......  .  ....+.+||+||++++...+..+++++++++
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            35689999999999999999999998876 44566666654332  2  4678999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      +|+|++++++++++..|+..+.... ..+.|+++|+||+|+...... .+....+    ++..+++|++|||++|+|+++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~e~Sak~~~gi~e  157 (174)
T d2bmea1          83 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRF----AQENELMFLETSALTGENVEE  157 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHH----HHhCCCEEEEeeCCCCcCHHH
Confidence            9999999999999999999886643 368999999999998654322 1222222    123456899999999999999


Q ss_pred             HHHHHHHHHHhhhccC
Q 029446          169 GLDWLASTLKEMRAAG  184 (193)
Q Consensus       169 ~~~~l~~~~~~~~~~~  184 (193)
                      +|+++.+.+.++...|
T Consensus       158 ~f~~l~~~i~~~~~~~  173 (174)
T d2bmea1         158 AFVQCARKILNKIESG  173 (174)
T ss_dssp             HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999988776654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-34  Score=197.12  Aligned_cols=157  Identities=20%  Similarity=0.266  Sum_probs=129.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      .+.+||+++|++|||||||+++|.++.+. .+.+|.+........    ....+.+||++|++++...+..+++++++++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            36799999999999999999999999887 456777777654333    3567889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      +|||++++++|+.+..|+..+... ...+.|+++|+||+|+.+.  ...++. +.+    ++..+++|++|||++|.||+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~SAk~~~nV~  155 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDA-KDY----ADSIHAIFVETSAKNAININ  155 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHH-HHH----HHHTTCEEEECBTTTTBSHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHH-HHH----HHHcCCEEEEEecCCCCCHH
Confidence            999999999999999998877654 3468999999999999754  222222 222    23345689999999999999


Q ss_pred             HHHHHHHHHH
Q 029446          168 EGLDWLASTL  177 (193)
Q Consensus       168 ~~~~~l~~~~  177 (193)
                      ++|..|.+.+
T Consensus       156 e~f~~l~~~i  165 (167)
T d1z0ja1         156 ELFIEISRRI  165 (167)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999876

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-35  Score=203.54  Aligned_cols=162  Identities=20%  Similarity=0.354  Sum_probs=130.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE--EEE------------cCEEEEEEecCCCCCCHHhHHh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK--VQY------------KNVIFTVWDVGGQEKLRPLWRH   80 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~------------~~~~~~i~D~~g~~~~~~~~~~   80 (193)
                      +.+||+++|++|||||||+++|.++.+.. +.++.+.++..  +..            ..+++.+||++|+++++..+..
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            46899999999999999999999988774 45555554432  221            2368999999999999999999


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEEEe
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGT  158 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  158 (193)
                      +++++|++++|||++++.+++.+..|+.++.........|+++|+||+|+.....  .++. ..+    ++..++++++|
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~-~~~----~~~~~~~~~e~  158 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQA-REL----ADKYGIPYFET  158 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHH-HHH----HHHTTCCEEEE
T ss_pred             HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHH-HHH----HHHcCCEEEEE
Confidence            9999999999999999999999999998877665567789999999999876422  2222 212    23345689999


Q ss_pred             ccccCCCHHHHHHHHHHHHHhhhc
Q 029446          159 CALKGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       159 Sa~~~~gi~~~~~~l~~~~~~~~~  182 (193)
                      ||++|+||+++|++|.+.+.++..
T Consensus       159 Sak~~~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         159 SAATGQNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999876654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-34  Score=197.10  Aligned_cols=157  Identities=18%  Similarity=0.321  Sum_probs=126.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      +.+||+++|++|+|||||++++.++.+.. +.++.+.++..  ...  ..+.+.+||++|++.+...+..+++++|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            56899999999999999999999988774 44555555443  333  35789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      |+|+++.++++.+..|+..+.+. .....|+++++||+|+...... .+..+.+    ++..++++++|||++|+||+++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~----~~~~~~~~~e~Saktg~~v~e~  157 (166)
T d1z0fa1          83 VYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQF----AEENGLLFLEASAKTGENVEDA  157 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHH
T ss_pred             EeccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHH----HHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999887654 3467899999999998654322 1222222    2334568999999999999999


Q ss_pred             HHHHHHHH
Q 029446          170 LDWLASTL  177 (193)
Q Consensus       170 ~~~l~~~~  177 (193)
                      |+.|.+.+
T Consensus       158 f~~i~~~i  165 (166)
T d1z0fa1         158 FLEAAKKI  165 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999876

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=196.24  Aligned_cols=161  Identities=19%  Similarity=0.224  Sum_probs=125.9

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE-EE--EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK-VQ--YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~-~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +.||+|+|++|+|||||++++.++.+.+ +.||.+..... ..  .....+.+||++|++.+...+..+++++|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            4799999999999999999999999874 56777644432 22  24678999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------cCCCCc-eEEEEecccc
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF---------DLKNRK-WHIQGTCALK  162 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~Sa~~  162 (193)
                      |++++.+|+++..|+...+... .++.|+++|+||+|+.+.....+........         .++..+ .+|++|||++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             ccchhHHHHHHHHHHHHHHHHh-CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999998888877653 3679999999999997642221111111100         011122 4899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 029446          163 GDGLYEGLDWLASTLK  178 (193)
Q Consensus       163 ~~gi~~~~~~l~~~~~  178 (193)
                      |.||+++|+.+.+.+.
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=200.21  Aligned_cols=164  Identities=21%  Similarity=0.308  Sum_probs=128.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      +-+||+|+|++|||||||++++.++.+.. +.++.......  ...  ....+.+||++|+..+...+..++..+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            45899999999999999999999988763 44444444332  222  45789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      |+|++++.+|+++..|+..+.+. ...+.|+++|+||+|+..... ..+....+    ++..+++|++|||++|.||+++
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~----a~~~~~~~~e~Sa~tg~~V~e~  156 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAF----AREHGLIFMETSAKTACNVEEA  156 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHH----HHHcCCEEEEecCCCCCCHHHH
Confidence            99999999999999999888664 336899999999999765321 11112211    1234458999999999999999


Q ss_pred             HHHHHHHHHhhhccC
Q 029446          170 LDWLASTLKEMRAAG  184 (193)
Q Consensus       170 ~~~l~~~~~~~~~~~  184 (193)
                      |..|++.+.++..+|
T Consensus       157 f~~i~~~i~~~~~~~  171 (173)
T d2a5ja1         157 FINTAKEIYRKIQQG  171 (173)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcc
Confidence            999999988766544

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-34  Score=198.23  Aligned_cols=159  Identities=23%  Similarity=0.330  Sum_probs=130.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      ..|||+++|++|||||||+++|..+.+. .+.+|.+..+.....    ..+.+.+||++|++.+...+..++++++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            4689999999999999999999998877 456788777654333    35889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      |+|.++..+++.+..|+..+.+. ..++.|+++|+||+|+..+... .+..+.+    ++..+++|++|||++|+||+++
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~----~~~~~~~~~e~SAk~g~~V~e~  159 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSY----ADDNSLLFMETSAKTSMNVNEI  159 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHHHHH----HHhcCCEEEEeeCCCCCCHHHH
Confidence            99999999999999999888653 3368999999999998764221 2222222    2334568999999999999999


Q ss_pred             HHHHHHHHHh
Q 029446          170 LDWLASTLKE  179 (193)
Q Consensus       170 ~~~l~~~~~~  179 (193)
                      |+.|.+.+.+
T Consensus       160 f~~l~~~i~~  169 (170)
T d1r2qa_         160 FMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHTSCC
T ss_pred             HHHHHHHHhh
Confidence            9999987643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-34  Score=197.29  Aligned_cols=161  Identities=22%  Similarity=0.330  Sum_probs=129.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      .+||+++|++|+|||||+++|.++.+. .+.+|.+.++.  .+..  ..+.+.+||++|++.+...+..++..+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            579999999999999999999999877 45688887654  3444  357899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      ||++++.+++++..|+...... .....|+++++||+|+.+.....++........++..+++|++|||++|.||+++|+
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            9999999999999998876654 336789999999999866432222211111112344567899999999999999999


Q ss_pred             HHHHHHH
Q 029446          172 WLASTLK  178 (193)
Q Consensus       172 ~l~~~~~  178 (193)
                      .|.+++.
T Consensus       162 ~i~~~i~  168 (170)
T d1ek0a_         162 GIGEKIP  168 (170)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHhc
Confidence            9987653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=196.84  Aligned_cols=165  Identities=20%  Similarity=0.223  Sum_probs=127.0

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      +....+||+++|++|||||||+++|+++.+. .+.||.+..... +..  ..+.+.+||++|++.+...+..+++++|++
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~   84 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   84 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence            4456789999999999999999999999877 456777654433 222  457899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh---------CCCcCCCC-ceEEEEe
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL---------GLFDLKNR-KWHIQGT  158 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~  158 (193)
                      ++|||++++++|+++..|+....+.. ..+.|+++|+||+|+.+...........         +...++.. .++|++|
T Consensus        85 ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~  163 (185)
T d2atxa1          85 LICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  163 (185)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             eeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence            99999999999999888888777643 3689999999999987632111100000         00001111 2479999


Q ss_pred             ccccCCCHHHHHHHHHHHHH
Q 029446          159 CALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       159 Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      ||++|.||+++|+.+++.+.
T Consensus       164 SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         164 SALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999988763

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-34  Score=198.74  Aligned_cols=163  Identities=18%  Similarity=0.321  Sum_probs=104.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEEc--CEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ++-|||+++|.++||||||+++|.++.+. .+.+|.+.++.  .+..+  .+.+.+||+||++.+...+..+++++|++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            45689999999999999999999988876 44577766554  34443  578889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      +|||++++.+++.+..|+..+... ...+.|+++|+||.|+....... +....+    ++..++++++|||++|+||++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~gv~e  158 (173)
T d2fu5c1          84 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKL----ALDYGIKFMETSAKANINVEN  158 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHH----HHHHTCEEEECCC---CCHHH
T ss_pred             EEEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHHHH----HHhcCCEEEEEeCCCCCCHHH
Confidence            999999999999999998887543 34679999999999988753321 111111    234456899999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 029446          169 GLDWLASTLKEMRA  182 (193)
Q Consensus       169 ~~~~l~~~~~~~~~  182 (193)
                      +|++|++.+.++..
T Consensus       159 ~f~~l~~~i~~k~~  172 (173)
T d2fu5c1         159 AFFTLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999977653

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=195.55  Aligned_cols=163  Identities=20%  Similarity=0.343  Sum_probs=128.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeE--EEEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ++-+||+++|++|||||||++++.++.+. .+.++.+...  ..+..  ..+.+.+||++|++++...+..+++.+++++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            35689999999999999999999998876 3445555443  33444  3578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      +|||++++.++..+..|+..+.+.. .++.|+++|+||+|+.+.... .+.....    .+..+.++++|||++|+|+++
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~i~e  156 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAF----AEKNNLSFIETSALDSTNVEE  156 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHH
T ss_pred             EEEECCCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHh----hcccCceEEEEecCCCcCHHH
Confidence            9999999999999999998887643 367999999999998864221 1221111    123345899999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 029446          169 GLDWLASTLKEMRA  182 (193)
Q Consensus       169 ~~~~l~~~~~~~~~  182 (193)
                      +|+.+.+.+.+...
T Consensus       157 ~f~~l~~~i~~~~~  170 (175)
T d2f9la1         157 AFKNILTEIYRIVS  170 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999998875544

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-33  Score=196.93  Aligned_cols=162  Identities=24%  Similarity=0.385  Sum_probs=131.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLI   89 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   89 (193)
                      ..-|||+|+|++|||||||++++.++.+. .+.+|.+.++..  +..  ..+.+.+|||||++++..++..+++++++++
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            45689999999999999999999998876 456777766543  333  4678999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      +|||+++++++.....++..+.+. ...+.|+++|+||+|+.+..... +....+    .+..+++|++|||++|.||++
T Consensus        84 ~v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~e~SAk~g~gi~e  158 (194)
T d2bcgy1          84 IVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEF----ADANKMPFLETSALDSTNVED  158 (194)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHH----HHHTTCCEEECCTTTCTTHHH
T ss_pred             EEEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhh----hhccCcceEEEecCcCccHHH
Confidence            999999999999999988887653 34789999999999998753321 111111    123345799999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 029446          169 GLDWLASTLKEMR  181 (193)
Q Consensus       169 ~~~~l~~~~~~~~  181 (193)
                      +|+.|.+.+.+..
T Consensus       159 ~f~~l~~~i~~~~  171 (194)
T d2bcgy1         159 AFLTMARQIKESM  171 (194)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887544

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-33  Score=193.36  Aligned_cols=159  Identities=21%  Similarity=0.353  Sum_probs=120.6

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-c-cccccceeEEEE--EE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-S-TVPTIGFNVEKV--QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~-~~~t~~~~~~~~--~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      +..|||+++|+++||||||++++.++.+. . +.++.+.++...  ..  ..+.+.+|||||++.+...+..+++++|++
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~   83 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   83 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence            45689999999999999999999998875 3 345666666543  33  346899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHH
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  167 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (193)
                      ++|||++++.++..+..++....... ....|+++|+||+|+.+.... .+....+    ++..+++|++|||++|+||+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~~~----~~~~~~~~~e~Sak~g~gi~  158 (170)
T d2g6ba1          84 LLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKL----AKEYGLPFMETSAKTGLNVD  158 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHH----HHHHTCCEEECCTTTCTTHH
T ss_pred             EEEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHHHHH----HHHcCCEEEEEeCCCCcCHH
Confidence            99999999999999999998876643 357899999999998875322 1222222    12345689999999999999


Q ss_pred             HHHHHHHHHHH
Q 029446          168 EGLDWLASTLK  178 (193)
Q Consensus       168 ~~~~~l~~~~~  178 (193)
                      ++|++|++.+.
T Consensus       159 e~f~~l~~~i~  169 (170)
T d2g6ba1         159 LAFTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcC
Confidence            99999998875

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-32  Score=188.54  Aligned_cols=161  Identities=18%  Similarity=0.303  Sum_probs=131.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE--EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      .+||+++|++|+|||||+++|.++.+. .+.++.+....  .+..  ....+.+||+||+++++..+..++.++|++++|
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v   86 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV   86 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            489999999999999999999998876 34555555443  3344  457899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      ||++++.+++.+..|+.++.........|+++++||.|........+....+    ++..++++++|||++|+||+++|+
T Consensus        87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~----~~~~~~~~~e~Sa~tg~gv~e~f~  162 (177)
T d1x3sa1          87 YDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF----ARKHSMLFIEASAKTCDGVQCAFE  162 (177)
T ss_dssp             EETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHH----HHHCCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999998776556779999999999987653322222222    234556899999999999999999


Q ss_pred             HHHHHHHhhh
Q 029446          172 WLASTLKEMR  181 (193)
Q Consensus       172 ~l~~~~~~~~  181 (193)
                      ++++.+.+..
T Consensus       163 ~l~~~l~~~p  172 (177)
T d1x3sa1         163 ELVEKIIQTP  172 (177)
T ss_dssp             HHHHHHHTSG
T ss_pred             HHHHHHccCc
Confidence            9999887654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-33  Score=193.82  Aligned_cols=165  Identities=18%  Similarity=0.196  Sum_probs=127.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEE-EE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKV-QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~-~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      +.+||+++|++|+|||||+++|..+.+. .+.||.+...... ..  ....+.+||++|++++...+..+++++|++++|
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            4689999999999999999999999987 4567777554332 22  457899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh---------hhCCCcCCC-CceEEEEeccc
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCE---------GLGLFDLKN-RKWHIQGTCAL  161 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~Sa~  161 (193)
                      ||+++++||+++..|+....... ..+.|+++|+||+|+.+.....+...         +.+...++. .+.+|++|||+
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            99999999999998877776643 36799999999999875421111000         000000111 23479999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhh
Q 029446          162 KGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~~~  181 (193)
                      +|.||+++|+.+++.+.+..
T Consensus       161 ~~~~V~e~f~~l~~~~~~~~  180 (191)
T d2ngra_         161 TQKGLKNVFDEAILAALEPP  180 (191)
T ss_dssp             TCTTHHHHHHHHHHHHTSCC
T ss_pred             CCcCHHHHHHHHHHHHhcCc
Confidence            99999999999998876544

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-32  Score=191.89  Aligned_cols=163  Identities=20%  Similarity=0.248  Sum_probs=126.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEE-EEEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      .+.+||+|+|++|||||||+++|..+.+. .+.+|.+.... .+..  ....+.+||++|++.+...+..+++++|++++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            46799999999999999999999999977 45677775543 2333  46788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------cCCC-CceEEEEecc
Q 029446           91 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF---------DLKN-RKWHIQGTCA  160 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~Sa  160 (193)
                      |||++++++|+++..|+....+.. ..+.|+++|+||+|+.+.....+........         .++. ..++|++|||
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            999999999999988777766543 3578999999999987642111111111000         0111 2258999999


Q ss_pred             ccCCCHHHHHHHHHHHHH
Q 029446          161 LKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~  178 (193)
                      ++|+||+++|+.|++.+.
T Consensus       162 k~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCCcCHHHHHHHHHHHHc
Confidence            999999999999998874

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.7e-33  Score=189.56  Aligned_cols=159  Identities=26%  Similarity=0.394  Sum_probs=126.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   91 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   91 (193)
                      -+||+++|.+|+|||||+++++++.+. .+.+|.+.++..  +..  ..+.+.+|||||++.+...+..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            379999999999999999999998876 456777766554  333  357888999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHH
Q 029446           92 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      ||++++.+++++..|+...... .....|++++++|.|+.+.....+..+.+.    +..++++++|||++|+||+++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~e~f~  156 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNEIFF  156 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHH----HHHTCCEEECBTTTTBSHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhhhhhhhHHHHHHHH----HhcCCeEEEECCCCCCCHHHHHH
Confidence            9999999999998887777654 336789999999999887654444433332    23456899999999999999999


Q ss_pred             HHHHHHHhh
Q 029446          172 WLASTLKEM  180 (193)
Q Consensus       172 ~l~~~~~~~  180 (193)
                      +|++.+.++
T Consensus       157 ~l~~~i~~k  165 (166)
T d1g16a_         157 TLAKLIQEK  165 (166)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999988764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-32  Score=187.73  Aligned_cols=158  Identities=19%  Similarity=0.253  Sum_probs=115.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE-----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY-----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~-----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      -+||+++|++|||||||+++|.++.+. .+.+|.+........     ....+.+||++|++++...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            479999999999999999999998876 445666555443322     35779999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHc---CCCCCCCeEEEEEeCCCCCCCC---CHh---HHHhhhCCCcCCCCceEEEEeccc
Q 029446           91 VVDSLDRERIGKAKQEFQAIIK---DPFMLNSVILVFANKQDMKGAM---TPM---EVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~p~ivv~nK~Dl~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      |+|++++.+|+.+..|+.++..   .....+.|+++|+||+|+.+..   ..+   ++.+.++       ..+|++|||+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~-------~~~~~e~SA~  154 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG-------DIPLFLTSAK  154 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT-------SCCEEEEBTT
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcC-------CCeEEEEeCC
Confidence            9999999999999999887764   2334578999999999987531   112   2222222       2479999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhh
Q 029446          162 KGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~~~  181 (193)
                      +|.||+++|++|++.+.+++
T Consensus       155 ~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         155 NAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             TTBSHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhcc
Confidence            99999999999999887664

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.8e-32  Score=189.54  Aligned_cols=162  Identities=17%  Similarity=0.229  Sum_probs=132.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEE----cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      +||+|+|.+|||||||+++++++.+. .+.+|.+.++.....    ..+.+.+||++|+..+...+..++..++++++|+
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            79999999999999999999998877 467888877765444    4578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHH
Q 029446           93 DSLDRERIGKAKQEFQAIIKD---PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  169 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  169 (193)
                      |.+++.+++.+..|+.++...   ....+.|+++|+||+|+.+.....+....+.   ....++++++|||++|.||+++
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC---YSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH---HHTTSCCEEECBTTTTBSHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHH---HHhcCCeEEEEcCCCCcCHHHH
Confidence            999999999999998777553   2234689999999999877543333322221   1234568999999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 029446          170 LDWLASTLKEMRA  182 (193)
Q Consensus       170 ~~~l~~~~~~~~~  182 (193)
                      |++|++.+.++..
T Consensus       160 f~~l~~~i~~~~~  172 (184)
T d1vg8a_         160 FQTIARNALKQET  172 (184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccc
Confidence            9999998877654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.1e-33  Score=191.01  Aligned_cols=161  Identities=17%  Similarity=0.128  Sum_probs=122.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc--ccccccceeEE--EEEE--cCEEEEEEecCCCCCC-HHhHHhhhcCCCEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL--STVPTIGFNVE--KVQY--KNVIFTVWDVGGQEKL-RPLWRHYFNNTDGL   88 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~--~~~~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~-~~~~~~~~~~~d~~   88 (193)
                      .-|||+++|++|+|||||++++++..+.  ...+|.+.+..  .+..  ....+.+||+++.... +..+..+++++|++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~   81 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence            4589999999999999999999987654  34455655433  3333  4567889998764322 22567788999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           89 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      ++|||++++.+++++..|+..+......++.|+++|+||+|+.+..  ..++. +.+    ++..+++|++|||++|+||
T Consensus        82 ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~-~~~----a~~~~~~~~e~Sak~g~~i  156 (172)
T d2g3ya1          82 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RAC----AVVFDCKFIETSAAVQHNV  156 (172)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHH----HHHHTCEEEECBTTTTBSH
T ss_pred             eeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHH-HHH----HHHcCCeEEEEeCCCCcCH
Confidence            9999999999999999999988776555789999999999987642  22222 222    2234568999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 029446          167 YEGLDWLASTLKEMR  181 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~  181 (193)
                      +++|+.|++.+..++
T Consensus       157 ~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         157 KELFEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcc
Confidence            999999999987665

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=4.5e-32  Score=188.37  Aligned_cols=155  Identities=15%  Similarity=0.255  Sum_probs=124.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVLS-TVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      ++||+++|++|||||||++++..+.+.. +.||.+..... +..  ..+.+.+||++|++.+...+..+++++|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            4799999999999999999999999874 56776544432 222  4678999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHh---HHHhhhCCCcCCCCceEE
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--------------TPM---EVCEGLGLFDLKNRKWHI  155 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~---~~~~~~~~~~~~~~~~~~  155 (193)
                      |+++++||+.+..|+........ .+.|+++|+||+|+....              ..+   ++.+..+       ..+|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-------~~~y  153 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------AATY  153 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------CSEE
T ss_pred             ecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhC-------CCeE
Confidence            99999999999988888765432 589999999999986431              111   1222222       2379


Q ss_pred             EEeccccCC-CHHHHHHHHHHHHHh
Q 029446          156 QGTCALKGD-GLYEGLDWLASTLKE  179 (193)
Q Consensus       156 ~~~Sa~~~~-gi~~~~~~l~~~~~~  179 (193)
                      ++|||++|+ |++++|+.+++.+.+
T Consensus       154 ~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         154 IECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             EECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             EEEeCCCCCcCHHHHHHHHHHHHhc
Confidence            999999998 599999999998865

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.98  E-value=1.7e-30  Score=178.11  Aligned_cols=166  Identities=56%  Similarity=0.981  Sum_probs=150.5

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEEC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   94 (193)
                      .+.+||+++|.+|||||||++++.++.+..+.+|.+............+.+||.+|...+.......+..++++++++|+
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS   82 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhh
Confidence            36799999999999999999999999998888899888888888999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHH
Q 029446           95 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  174 (193)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  174 (193)
                      .+..++.....++............|+++++||.|+.......++...+....+...+++|++|||++|+||+++|++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~  162 (169)
T d1upta_          83 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV  162 (169)
T ss_dssp             TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             hhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999888888877766667899999999999999888888888887777778889999999999999999999999


Q ss_pred             HHHHhh
Q 029446          175 STLKEM  180 (193)
Q Consensus       175 ~~~~~~  180 (193)
                      +.+.++
T Consensus       163 ~~l~~k  168 (169)
T d1upta_         163 ETLKSR  168 (169)
T ss_dssp             HHHHTC
T ss_pred             HHHHhC
Confidence            988654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4e-31  Score=182.75  Aligned_cols=160  Identities=17%  Similarity=0.235  Sum_probs=124.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEE--EE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKV--QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   90 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   90 (193)
                      .-|||+|+|++|||||||++++.++.+. .+.+|.+......  ..  ....+.+||++|+.++...+..++..++++++
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   84 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   84 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence            4589999999999999999999998877 4566776664432  22  35788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHc---CCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           91 VVDSLDRERIGKAKQEFQAIIK---DPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      ++|.+++.+++.+..|+.++..   .....+.|+++|+||+|+.+.. ..++.. .+..   +...++|++|||++|+||
T Consensus        85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~-~~~~---~~~~~~~~e~Sak~~~gI  160 (174)
T d1wmsa_          85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQ-AWCR---DNGDYPYFETSAKDATNV  160 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHH-HHHH---HTTCCCEEECCTTTCTTH
T ss_pred             EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHH-HHHH---HcCCCeEEEEcCCCCcCH
Confidence            9999999999999998877654   3344678999999999997642 233322 2211   122357999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 029446          167 YEGLDWLASTLKE  179 (193)
Q Consensus       167 ~~~~~~l~~~~~~  179 (193)
                      +++|+.|++.+..
T Consensus       161 ~e~f~~l~~~il~  173 (174)
T d1wmsa_         161 AAAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.3e-31  Score=181.15  Aligned_cols=158  Identities=13%  Similarity=0.182  Sum_probs=122.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEE-EEE--cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      ..+||+++|+++||||||++++.++.+..+.+|.+..+.. +..  ..+.+.+||++|+..+.     +++.+|++++||
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilVf   78 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVF   78 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEEe
Confidence            4699999999999999999999999988777777666543 333  45789999999988654     578899999999


Q ss_pred             ECCChhhHHHHHHHHHHHHc--CCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCcCCCCceEEEEeccccCCCH
Q 029446           93 DSLDRERIGKAKQEFQAIIK--DPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  166 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~--~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (193)
                      |++++.||+++..|+..+..  .....+.|+++|+||.|+.....    .++. +.+.   .+..+++|++|||++|.|+
T Consensus        79 d~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~-~~~~---~~~~~~~~~e~SAk~~~~v  154 (175)
T d2bmja1          79 SLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA-RALC---ADMKRCSYYETCATYGLNV  154 (175)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHH-HHHH---HTSTTEEEEEEBTTTTBTH
T ss_pred             ecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHH-HHHH---HHhCCCeEEEeCCCCCcCH
Confidence            99999999999988877643  22346789999999999754321    2222 2121   1235678999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 029446          167 YEGLDWLASTLKEMRA  182 (193)
Q Consensus       167 ~~~~~~l~~~~~~~~~  182 (193)
                      +++|..+++.+.....
T Consensus       155 ~~~F~~l~~~i~~~~~  170 (175)
T d2bmja1         155 DRVFQEVAQKVVTLRK  170 (175)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999998876553

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8e-32  Score=184.74  Aligned_cols=153  Identities=20%  Similarity=0.343  Sum_probs=120.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEE--EE--EcCEEEEEEecCCCCCCHH-hHHhhhcCCCEEE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEK--VQ--YKNVIFTVWDVGGQEKLRP-LWRHYFNNTDGLI   89 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~--~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i   89 (193)
                      +.|||+++|++|||||||++++.++.+. .+.++.+.....  ..  .....+.+||++|...+.. .++.+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            3589999999999999999999998877 445666544432  22  2567899999999887765 4677889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCcCCCCceEEEEecccc---CC
Q 029446           90 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALK---GD  164 (193)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~  164 (193)
                      +|||++++++|+++..|+.++.+.....+.|+++|+||+|+.++.  ..++. +.+    ++..+++|++|||++   ++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~SAkt~~~~~  155 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLA-QKF----ADTHSMPLFETSAKNPNDND  155 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHH-HHH----HHHTTCCEEECCSSSGGGGS
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHH-HHH----HHHCCCEEEEEecccCCcCc
Confidence            999999999999999999998775555789999999999987642  22222 222    234455899999987   56


Q ss_pred             CHHHHHHHH
Q 029446          165 GLYEGLDWL  173 (193)
Q Consensus       165 gi~~~~~~l  173 (193)
                      ||+++|+.|
T Consensus       156 ~V~e~F~~l  164 (165)
T d1z06a1         156 HVEAIFMTL  164 (165)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHh
Confidence            999999876

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-29  Score=172.98  Aligned_cols=157  Identities=30%  Similarity=0.557  Sum_probs=140.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   98 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (193)
                      ||+++|++|||||||+|++.++.+..+.||.+.+............+||++|...+...+..++..++++++++|.++..
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   81 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE   81 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence            79999999999999999999999988889999999999889999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcC-------CCCceEEEEeccccCCCHHHHHH
Q 029446           99 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-------KNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      ++.....++..........+.|+++++||.|+.......++.+.+.....       ....+++++|||++|+||+++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~  161 (166)
T d2qtvb1          82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ  161 (166)
T ss_dssp             GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHH
T ss_pred             hhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHH
Confidence            99999998888888777788999999999999887777777776654433       23457899999999999999999


Q ss_pred             HHHH
Q 029446          172 WLAS  175 (193)
Q Consensus       172 ~l~~  175 (193)
                      ||.+
T Consensus       162 ~l~~  165 (166)
T d2qtvb1         162 WLSQ  165 (166)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            9975

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.96  E-value=1.7e-28  Score=170.50  Aligned_cols=165  Identities=32%  Similarity=0.567  Sum_probs=133.9

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   92 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   92 (193)
                      ..++..||+++|++|||||||+++|.++.+....++.+.+...+......+..||++++..+...+..+....+++++++
T Consensus         9 ~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (186)
T d1f6ba_           9 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV   88 (186)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeee
Confidence            34688999999999999999999999999887778888888888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC------------cCCCCceEEEEecc
Q 029446           93 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCA  160 (193)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa  160 (193)
                      |.++...+......+..........+.|+++++||.|+.......++.+.+...            ......+++++|||
T Consensus        89 d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  168 (186)
T d1f6ba_          89 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV  168 (186)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred             eccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeC
Confidence            999999999888877777776666889999999999998877776666555432            22335678999999


Q ss_pred             ccCCCHHHHHHHHHHHH
Q 029446          161 LKGDGLYEGLDWLASTL  177 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~  177 (193)
                      ++|+|++++|+||.+++
T Consensus       169 ~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         169 LKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TTTBSHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            99999999999998764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.4e-28  Score=171.84  Aligned_cols=165  Identities=25%  Similarity=0.410  Sum_probs=133.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (193)
                      +++||+++|..|||||||+++|..+.+. +.||+|.+...+......+.+||++|++.++..+..+++.++++++++|++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~-~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~   79 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS   79 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS-CCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC-CCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeecc
Confidence            5789999999999999999999988874 679999999999999999999999999999999999999999999999998


Q ss_pred             Chh----------hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC------------------CHhH-----HHhh
Q 029446           96 DRE----------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM------------------TPME-----VCEG  142 (193)
Q Consensus        96 ~~~----------s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------------~~~~-----~~~~  142 (193)
                      +..          .+.+....|..++......+.|+++++||.|+....                  ....     ..+.
T Consensus        80 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f  159 (200)
T d2bcjq2          80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF  159 (200)
T ss_dssp             GGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHH
T ss_pred             chhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHH
Confidence            653          455556667777776666889999999999975310                  1111     1122


Q ss_pred             hCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          143 LGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       143 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                      +.......+.+.+++|||++++||+++|+.|.+.+.+..
T Consensus       160 ~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         160 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            233333456778999999999999999999999887653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=8.8e-28  Score=168.30  Aligned_cols=161  Identities=23%  Similarity=0.393  Sum_probs=126.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (193)
                      +++||+++|..|||||||+++|....+    +|.++....+......+.+||++|++.++..+..++++++++++|+|++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~   76 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS   76 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence            578999999999999999999976544    5667777788889999999999999999999999999999999999998


Q ss_pred             ChhhH----------HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-----------------CCHhH----HHhhh-
Q 029446           96 DRERI----------GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-----------------MTPME----VCEGL-  143 (193)
Q Consensus        96 ~~~s~----------~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------------~~~~~----~~~~~-  143 (193)
                      +..++          .+...++..++........|+++++||.|+...                 ....+    +...+ 
T Consensus        77 ~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  156 (195)
T d1svsa1          77 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFE  156 (195)
T ss_dssp             GGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHH
T ss_pred             ccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHH
Confidence            76544          455566777777666678999999999986421                 11111    11111 


Q ss_pred             CCC-cCCCCceEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446          144 GLF-DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       144 ~~~-~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  180 (193)
                      ... ......+++++|||++++||+++|+.+.+.+.++
T Consensus       157 ~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         157 DLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             TTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            111 1234567888999999999999999999988654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=2.5e-26  Score=158.97  Aligned_cols=155  Identities=17%  Similarity=0.042  Sum_probs=109.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc---c-ccccceeEEEEEEcCEEEEEEecCCCCCC--------HHhHHhhhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS---T-VPTIGFNVEKVQYKNVIFTVWDVGGQEKL--------RPLWRHYFN   83 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~---~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~   83 (193)
                      +.-.|+|+|.+|+|||||+|+|++.....   . ..|...........+..+.+|||||....        ......+++
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccc
Confidence            44579999999999999999999876432   2 23444555566678899999999997553        222344568


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccC
Q 029446           84 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG  163 (193)
Q Consensus        84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (193)
                      ++|++++|+|++++...  ...++...++.. ..+.|+|+|+||+|+....  ++..+.+...   .....++++||++|
T Consensus        84 ~ad~il~v~D~~~~~~~--~~~~i~~~l~~~-~~~~piilv~NK~Dl~~~~--~~~~~~~~~~---~~~~~~~~iSA~~~  155 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTP--EDELVARALKPL-VGKVPILLVGNKLDAAKYP--EEAMKAYHEL---LPEAEPRMLSALDE  155 (178)
T ss_dssp             SCSEEEEEEETTSCCCH--HHHHHHHHHGGG-TTTSCEEEEEECGGGCSSH--HHHHHHHHHT---STTSEEEECCTTCH
T ss_pred             cccceeeeechhhhhcc--cccchhhheecc-ccchhhhhhhcccccccCH--HHHHHHHHhh---cccCceEEEecCCC
Confidence            89999999999876443  334555554432 2468999999999997642  2222211110   11236889999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 029446          164 DGLYEGLDWLASTLK  178 (193)
Q Consensus       164 ~gi~~~~~~l~~~~~  178 (193)
                      +|+++++++|.+.+.
T Consensus       156 ~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         156 RQVAELKADLLALMP  170 (178)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHhCC
Confidence            999999999988774

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.8e-26  Score=160.65  Aligned_cols=163  Identities=23%  Similarity=0.364  Sum_probs=122.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (193)
                      +.+||+++|.+|||||||+++|.  ....+.||.|+....+..+...+.+||++|++.++..+..++++++++++++|.+
T Consensus         1 r~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~   78 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS   78 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence            45899999999999999999993  2235679999999999999999999999999999999999999999999999998


Q ss_pred             Ch----------hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC------------------CCHhH----HHhhh
Q 029446           96 DR----------ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA------------------MTPME----VCEGL  143 (193)
Q Consensus        96 ~~----------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------------~~~~~----~~~~~  143 (193)
                      +.          ..+++...++..++......+.|+++++||+|+.+.                  ...+.    +.+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f  158 (200)
T d1zcba2          79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF  158 (200)
T ss_dssp             CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred             CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence            64          456777788888888777789999999999997531                  11111    11111


Q ss_pred             C-C-CcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446          144 G-L-FDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       144 ~-~-~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  180 (193)
                      . . .......+.+++|||+++.||+++|+.+.+.+.++
T Consensus       159 ~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         159 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            1 1 11123456677899999999999999998887654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=3.2e-26  Score=155.87  Aligned_cols=148  Identities=20%  Similarity=0.223  Sum_probs=109.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCCH--------HhHHhhhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKLR--------PLWRHYFNNT   85 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~~   85 (193)
                      +||+++|.+|||||||+|+|++......    ..+.......+...+..+.+||+||..+..        .....++..+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA   81 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence            6999999999999999999998765422    223333345567788999999999954432        1234556889


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      |++++++|..+..+++....|...+....  .+.|+|+|+||+|+.+....          ..+..+.+++++||++|+|
T Consensus        82 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~iilv~NK~Dl~~~~~~----------~~~~~~~~~~~iSAk~~~g  149 (161)
T d2gj8a1          82 DRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITGETLG----------MSEVNGHALIRLSARTGEG  149 (161)
T ss_dssp             SEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHCCCCE----------EEEETTEEEEECCTTTCTT
T ss_pred             cccceeeccccccchhhhhhhhhhhhhcc--cccceeeccchhhhhhhHHH----------HHHhCCCcEEEEECCCCCC
Confidence            99999999998877666654444433322  47899999999998764221          1122456899999999999


Q ss_pred             HHHHHHHHHHHH
Q 029446          166 LYEGLDWLASTL  177 (193)
Q Consensus       166 i~~~~~~l~~~~  177 (193)
                      +++++++|.+.+
T Consensus       150 i~~L~~~l~~~l  161 (161)
T d2gj8a1         150 VDVLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhC
Confidence            999999998763

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=2.5e-25  Score=154.10  Aligned_cols=156  Identities=22%  Similarity=0.254  Sum_probs=107.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccc---cccccceeEEEEEE-cCEEEEEEecCCCCC-------CHHhHHhhhcCCCE
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLS---TVPTIGFNVEKVQY-KNVIFTVWDVGGQEK-------LRPLWRHYFNNTDG   87 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d~   87 (193)
                      +|+++|.+|||||||+|+|++.....   ...|...++..... ....+++|||||...       ........+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            59999999999999999999876542   23344444444333 567899999999432       22233455688999


Q ss_pred             EEEEEECCChh--hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           88 LIYVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        88 ~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      +++++|.....  .+.....++.....  ...++|+|+|+||+|+......++..+.+.     ..+.+++++||++|+|
T Consensus        83 ~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~iSA~tg~g  155 (180)
T d1udxa2          83 LLYVLDAADEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAG  155 (180)
T ss_dssp             EEEEEETTSCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTT
T ss_pred             hhhhcccccccccchhhhhhhhhcccc--ccchhhhhhhhhhhhhhhHHHHHHHHHHHH-----hcCCeEEEEEcCCCCC
Confidence            99999986542  22222233322211  113579999999999987644444444432     3456899999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 029446          166 LYEGLDWLASTLKEMR  181 (193)
Q Consensus       166 i~~~~~~l~~~~~~~~  181 (193)
                      ++++++.|.+.+....
T Consensus       156 id~L~~~i~~~l~~~~  171 (180)
T d1udxa2         156 LPALKEALHALVRSTP  171 (180)
T ss_dssp             HHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhhcC
Confidence            9999999999886543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.93  E-value=1.5e-25  Score=155.18  Aligned_cols=160  Identities=19%  Similarity=0.137  Sum_probs=111.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc----------ccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST----------VPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNN   84 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (193)
                      .+.++|+++|++|+|||||+|+|++......          ..+.......+......+.++|+||+.++.......+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            3578999999999999999999996432211          111122233455678899999999999999988889999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh---HHHhhhCCCcCCCCceEEEEeccc
Q 029446           85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM---EVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      +|++++++|+.+....+.. ..+..+..    .++|+++|+||+|+.+.+...   +..+.+..........+++++||+
T Consensus        83 ~d~~ilv~d~~~g~~~~~~-~~~~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQTG-EHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             CCEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             ccccccccccccccchhhh-hhhhhhhh----cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            9999999999875433222 22222222    478999999999998753321   112221111112345689999999


Q ss_pred             cCCCHHHHHHHHHHHHHh
Q 029446          162 KGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~  179 (193)
                      +|+|++++++.|.+.+.+
T Consensus       158 ~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcCCc
Confidence            999999999999998865

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.8e-25  Score=158.63  Aligned_cols=163  Identities=26%  Similarity=0.378  Sum_probs=130.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   95 (193)
                      +.+||+++|..|||||||++++..+.+   .||+|+....+..+.+.+.+||++|+..++..|..++++++++++++|.+
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~---~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s   81 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV---VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS   81 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC---CCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETT
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc---CCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEcc
Confidence            578999999999999999999975543   48999999999999999999999999999999999999999999999997


Q ss_pred             Ch----------hhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC------CCH-----------------------
Q 029446           96 DR----------ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA------MTP-----------------------  136 (193)
Q Consensus        96 ~~----------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------~~~-----------------------  136 (193)
                      +.          ..+.+....+..+++.....+.|++|++||+|+.++      ...                       
T Consensus        82 ~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~  161 (221)
T d1azta2          82 SYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGED  161 (221)
T ss_dssp             GGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCC
T ss_pred             ccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCc
Confidence            53          456677778888888877789999999999998532      000                       


Q ss_pred             ---hH----H----HhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          137 ---ME----V----CEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       137 ---~~----~----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                         .+    +    .+...........+.++.|||++..+|+.+|+.+.+.+.+..
T Consensus       162 ~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         162 PRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence               00    1    111112222335567788999999999999999988877554

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=3.3e-24  Score=145.62  Aligned_cols=146  Identities=24%  Similarity=0.309  Sum_probs=109.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCC--------CC-HHhHHhhhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQE--------KL-RPLWRHYFNN   84 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~--------~~-~~~~~~~~~~   84 (193)
                      +||+++|.+|+|||||+|+|++......    ..+.......+...+..+.+|||||..        .. .......+.+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK   80 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence            5899999999999999999998764422    233334455667788999999999932        11 1223344678


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCC
Q 029446           85 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGD  164 (193)
Q Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (193)
                      +|++++|+|++++...+... .+..+      ...++++++||+|+.+....+++...++.      +.+++++||++|+
T Consensus        81 ad~ii~v~d~~~~~~~~~~~-~~~~~------~~~~~i~~~~k~d~~~~~~~~~~~~~~~~------~~~~~~vSA~~g~  147 (160)
T d1xzpa2          81 ADIVLFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEKINEEEIKNKLGT------DRHMVKISALKGE  147 (160)
T ss_dssp             CSEEEEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHTC------STTEEEEEGGGTC
T ss_pred             CCEEEEEEeCCCCcchhhhh-hhhhc------ccccceeeeeeccccchhhhHHHHHHhCC------CCcEEEEECCCCC
Confidence            99999999999877654432 22222      35679999999999998888887777753      2368999999999


Q ss_pred             CHHHHHHHHHHH
Q 029446          165 GLYEGLDWLAST  176 (193)
Q Consensus       165 gi~~~~~~l~~~  176 (193)
                      |+++++++|.+.
T Consensus       148 gi~~L~~~I~ke  159 (160)
T d1xzpa2         148 GLEKLEESIYRE  159 (160)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhc
Confidence            999999998763

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=5.8e-25  Score=151.04  Aligned_cols=153  Identities=17%  Similarity=0.105  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCC---------CHHhHHhhhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEK---------LRPLWRHYFNNT   85 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~~   85 (193)
                      .|+++|++|||||||+|+|++......    ..|.......+......+.+||++|...         +......++..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            689999999999999999998765422    3344455667778899999999999322         223345556789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEeccccCCC
Q 029446           86 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  165 (193)
Q Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (193)
                      |+++++.|.++...... ..++..+ +.   .++|+|+|+||+|+.++...+...+....     ...+++++||++|.|
T Consensus        82 d~i~~~~~~~~~~~~~~-~~~~~~l-~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~i~iSAk~g~g  151 (171)
T d1mkya1          82 DLVLFVVDGKRGITKED-ESLADFL-RK---STVDTILVANKAENLREFEREVKPELYSL-----GFGEPIPVSAEHNIN  151 (171)
T ss_dssp             SEEEEEEETTTCCCHHH-HHHHHHH-HH---HTCCEEEEEESCCSHHHHHHHTHHHHGGG-----SSCSCEECBTTTTBS
T ss_pred             cEEEEeecccccccccc-ccccccc-cc---ccccccccchhhhhhhhhhhHHHHHHHhc-----CCCCeEEEecCCCCC
Confidence            99999999976554332 2223333 22   46899999999998754222211221111     112468899999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 029446          166 LYEGLDWLASTLKEMR  181 (193)
Q Consensus       166 i~~~~~~l~~~~~~~~  181 (193)
                      +++++++|.+.+.++.
T Consensus       152 id~L~~~i~~~l~e~~  167 (171)
T d1mkya1         152 LDTMLETIIKKLEEKG  167 (171)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCC
Confidence            9999999999987654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.91  E-value=2.3e-25  Score=154.66  Aligned_cols=156  Identities=20%  Similarity=0.237  Sum_probs=98.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc-ccccccceeEEEEEEcCEEEEEEecCCCCCC---------------HHhHHhhh
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL-STVPTIGFNVEKVQYKNVIFTVWDVGGQEKL---------------RPLWRHYF   82 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~---------------~~~~~~~~   82 (193)
                      .|+++|.+|||||||+|++++.... ...|.+......+...  .+.+|||||....               .......+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA   79 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecccccccc--cceecccCCceeccccccccccccchhhhhhhhhcc
Confidence            5899999999999999999987653 2122111122333343  3678999994211               11233455


Q ss_pred             cCCCEEEEEEECCChhhHHHHH---------HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCcCCCC
Q 029446           83 NNTDGLIYVVDSLDRERIGKAK---------QEFQAIIKDPFMLNSVILVFANKQDMKGAMTP--MEVCEGLGLFDLKNR  151 (193)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~---------~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~  151 (193)
                      +.+|++++|+|+..........         ..+...+..   .++|+|+|+||+|+....+.  ....+.+.. .....
T Consensus        80 ~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~  155 (184)
T d2cxxa1          80 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLSEI  155 (184)
T ss_dssp             GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTC-CGGGH
T ss_pred             cccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHHHHHHHHHHhcc-ccccc
Confidence            7899999999997532211110         111222222   47899999999998754221  122233322 12333


Q ss_pred             ceEEEEeccccCCCHHHHHHHHHHHHHhh
Q 029446          152 KWHIQGTCALKGDGLYEGLDWLASTLKEM  180 (193)
Q Consensus       152 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  180 (193)
                      ...++++||++|+|+++++++|.+.+.++
T Consensus       156 ~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         156 DKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             HHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence            44588999999999999999999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=3.9e-24  Score=148.70  Aligned_cols=160  Identities=15%  Similarity=0.058  Sum_probs=107.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc---cc-ccccceeEEEEEEcCEEEEEEecCCCCC------------CHHhH
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL---ST-VPTIGFNVEKVQYKNVIFTVWDVGGQEK------------LRPLW   78 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~---~~-~~t~~~~~~~~~~~~~~~~i~D~~g~~~------------~~~~~   78 (193)
                      ...+||+++|++|+|||||+|+|++....   .. ..|.......+..++..+.++|+||...            .....
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHH
Confidence            35699999999999999999999987643   22 2333344456677888999999999432            33344


Q ss_pred             HhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCcCCCCceEEE
Q 029446           79 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQ  156 (193)
Q Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~  156 (193)
                      ...++.+|++++|+|++....-  ....+......   .+.|+|+|+||+|+.....  ..++.+.+..........+++
T Consensus        86 ~~~~~~~dvii~v~d~~~~~~~--~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (186)
T d1mkya2          86 VDSIEKADVVVIVLDATQGITR--QDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  160 (186)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCH--HHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHhcCCEEEEeecccccchh--hHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEE
Confidence            5556789999999999865432  22223333332   4689999999999876432  233332222111122345799


Q ss_pred             EeccccCCCHHHHHHHHHHHHHh
Q 029446          157 GTCALKGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       157 ~~Sa~~~~gi~~~~~~l~~~~~~  179 (193)
                      ++||++|.|++++++.|.+.+..
T Consensus       161 ~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         161 FTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999776654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3e-23  Score=146.60  Aligned_cols=157  Identities=24%  Similarity=0.327  Sum_probs=112.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE---cCEEEEEEecCCCCCCH-HhHHhhhcCCCEEEEEEEC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY---KNVIFTVWDVGGQEKLR-PLWRHYFNNTDGLIYVVDS   94 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~v~d~   94 (193)
                      +|+++|++|||||||+|+|.++.+....+|.+.+...+..   ....+.+||++|++.++ ..+..++..++++++|+|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~   81 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS   81 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence            6899999999999999999999888777888888777665   46889999999998886 4567788999999999999


Q ss_pred             CChhh-HHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC--------------------------C
Q 029446           95 LDRER-IGKAKQEFQAIIKD--PFMLNSVILVFANKQDMKGAMTPMEVCEGLG--------------------------L  145 (193)
Q Consensus        95 ~~~~s-~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--------------------------~  145 (193)
                      ++..+ +.....++..++..  ....++|++||+||+|+......+++.+.+.                          .
T Consensus        82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
T d2fh5b1          82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL  161 (207)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred             ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhh
Confidence            98765 34454555554431  1235689999999999987655544432210                          0


Q ss_pred             C--------cCCCCceEEEEeccccCCC------HHHHHHHHHH
Q 029446          146 F--------DLKNRKWHIQGTCALKGDG------LYEGLDWLAS  175 (193)
Q Consensus       146 ~--------~~~~~~~~~~~~Sa~~~~g------i~~~~~~l~~  175 (193)
                      .        ......+.++++|++++.+      ++++-+||.+
T Consensus       162 ~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~  205 (207)
T d2fh5b1         162 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK  205 (207)
T ss_dssp             SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred             cccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHH
Confidence            0        0011346799999999987      7777777654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=1e-23  Score=146.47  Aligned_cols=156  Identities=20%  Similarity=0.171  Sum_probs=103.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--c-cccccceeEEEEEE-cCEEEEEEecCCC----CCC---HHhHHhhhcCCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL--S-TVPTIGFNVEKVQY-KNVIFTVWDVGGQ----EKL---RPLWRHYFNNTD   86 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~-~~~~~~i~D~~g~----~~~---~~~~~~~~~~~d   86 (193)
                      .+|+++|.+|||||||+|+|++....  . ...|...+...... ....+.+|||||.    ...   .......+..++
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            36999999999999999999987643  2 23455555555554 4568999999993    111   112223346789


Q ss_pred             EEEEEEECCChhhHHHHH----HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccc
Q 029446           87 GLIYVVDSLDRERIGKAK----QEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCAL  161 (193)
Q Consensus        87 ~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (193)
                      .++++++...........    .............++|+|+|+||+|+.+.... +.+.+.+      ..+.+++.+||+
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~------~~~~~v~~iSA~  155 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL------TDDYPVFPISAV  155 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHC------CSCCCBCCCSSC
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHh------ccCCcEEEEECC
Confidence            999999876433222111    11112222334457899999999999865322 2233322      234579999999


Q ss_pred             cCCCHHHHHHHHHHHHHh
Q 029446          162 KGDGLYEGLDWLASTLKE  179 (193)
Q Consensus       162 ~~~gi~~~~~~l~~~~~~  179 (193)
                      +|+|++++++.|.+.+.+
T Consensus       156 ~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         156 TREGLRELLFEVANQLEN  173 (185)
T ss_dssp             CSSTTHHHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHHhhhh
Confidence            999999999999998854

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=1.4e-23  Score=147.07  Aligned_cols=160  Identities=13%  Similarity=0.033  Sum_probs=96.4

Q ss_pred             hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccc--cccceeEEEEEEcCEEEEEEecCCCCCC-------------H
Q 029446           12 FFGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-STV--PTIGFNVEKVQYKNVIFTVWDVGGQEKL-------------R   75 (193)
Q Consensus        12 ~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~D~~g~~~~-------------~   75 (193)
                      ++...-.+|+|+|.+|||||||+|+|++.... ...  ++.......... ...+.+.|++|....             .
T Consensus        18 ~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc-cccceEEEEEeeccccccccccchhhhHH
Confidence            44444569999999999999999999986532 221  221111222221 234556676662111             1


Q ss_pred             HhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEE
Q 029446           76 PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHI  155 (193)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  155 (193)
                      ......+..++++++++|++++..  .....+...++.   .++|+++|+||+|+.+..+..+..+.+..........++
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~--~~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~  171 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPS--NDDVQMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred             hhhhccccchhhhhhhhhcccccc--cccccccccccc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCE
Confidence            122334456899999999976533  222222223332   468999999999987764443333222111113455689


Q ss_pred             EEeccccCCCHHHHHHHHHHHH
Q 029446          156 QGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus       156 ~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      +++||++|+|+++++++|.+.+
T Consensus       172 ~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998876

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.89  E-value=7e-23  Score=146.59  Aligned_cols=161  Identities=22%  Similarity=0.132  Sum_probs=106.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCcccc---cccc--ceeE----------------EEEEEcCEEEEEEecCCCCCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLST---VPTI--GFNV----------------EKVQYKNVIFTVWDVGGQEKL   74 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~~---~~t~--~~~~----------------~~~~~~~~~~~i~D~~g~~~~   74 (193)
                      +++.|+|+|++++|||||+|+|++......   ..+.  +...                ..+.....++.++||||+..|
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f   83 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence            345599999999999999999987432210   0011  1111                112334668999999999999


Q ss_pred             HHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh---HHHhh---------
Q 029446           75 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM---EVCEG---------  142 (193)
Q Consensus        75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~---------  142 (193)
                      .......+..+|++|+|+|+.+...-+.. ..+..+..    .++|+|+|+||+|+.......   .....         
T Consensus        84 ~~~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~  158 (227)
T d1g7sa4          84 TTLRKRGGALADLAILIVDINEGFKPQTQ-EALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ  158 (227)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred             cccchhcccccceEEEEEecccCcccchh-HHHHHhhc----CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHH
Confidence            88888888999999999999865433322 22222222    578999999999987643110   00000         


Q ss_pred             -------------h---C-------CCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhh
Q 029446          143 -------------L---G-------LFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       143 -------------~---~-------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  181 (193)
                                   +   .       .........+++++||++|.|++++++.|.....+..
T Consensus       159 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~  220 (227)
T d1g7sa4         159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (227)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence                         0   0       0000123468999999999999999999988775543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.87  E-value=7e-23  Score=143.42  Aligned_cols=158  Identities=18%  Similarity=0.093  Sum_probs=105.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc------cccccceeEEE--E---------------------EEcCEEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS------TVPTIGFNVEK--V---------------------QYKNVIFTV   65 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~------~~~t~~~~~~~--~---------------------~~~~~~~~i   65 (193)
                      +..++|+++|+.++|||||+++|++.....      ...|....+..  .                     ......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            456799999999999999999998643211      11121111111  1                     011356899


Q ss_pred             EecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHh
Q 029446           66 WDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME----VCE  141 (193)
Q Consensus        66 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~  141 (193)
                      +|+||+..|.......+..+|++++|+|+.+....+...+.+......   ...++|++.||+|+.+.....+    +.+
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHHH
Confidence            999999999999888889999999999998753222222222222211   2345889999999987532222    222


Q ss_pred             hhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446          142 GLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus       142 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      .+..  ....+++++++||++|+|+++|++.|.+.+
T Consensus       160 ~~~~--~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         160 FIEG--TVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             Hhcc--ccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            2221  223456899999999999999999998765

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.87  E-value=7.7e-22  Score=139.06  Aligned_cols=161  Identities=16%  Similarity=0.062  Sum_probs=104.7

Q ss_pred             cCCCc-cEEEEEcCCCCCHHHHHHHHhcCCccc------cccc--cceeEEEE--------------------------E
Q 029446           13 FGNSE-MRVVMLGLDAAGKTTILYKLHIGEVLS------TVPT--IGFNVEKV--------------------------Q   57 (193)
Q Consensus        13 ~~~~~-~~v~v~G~~~~GKssli~~l~~~~~~~------~~~t--~~~~~~~~--------------------------~   57 (193)
                      +..++ ++|+++|+.++|||||+++|.+.....      ...+  .+.....+                          .
T Consensus         3 ~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (205)
T d2qn6a3           3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP   82 (205)
T ss_dssp             CCCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCC
T ss_pred             CCCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccc
Confidence            33344 799999999999999999998632110      0000  00000000                          0


Q ss_pred             EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHh
Q 029446           58 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM  137 (193)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  137 (193)
                      .....+.+.|+||+..|.......+..+|++++|+|+.+.-.-......+......   ...|+||++||+|+.+.....
T Consensus        83 ~~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~  159 (205)
T d2qn6a3          83 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEAL  159 (205)
T ss_dssp             EEEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHH
T ss_pred             cceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHH
Confidence            11247899999999999998888889999999999998652111111222222221   235789999999998753322


Q ss_pred             H----HHhhhCCCcCCCCceEEEEeccccCCCHHHHHHHHHHHHH
Q 029446          138 E----VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  178 (193)
Q Consensus       138 ~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  178 (193)
                      +    ..+.+.  .....+++++++||++|.||+++++.|..+++
T Consensus       160 ~~~~~~~~~l~--~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         160 SQYRQIKQFTK--GTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHHHHHT--TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhc--cccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            2    222222  22344578999999999999999999888764

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.85  E-value=2e-21  Score=135.47  Aligned_cols=157  Identities=19%  Similarity=0.080  Sum_probs=107.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC-----C--c---------c---ccccccceeEEEEEEcCEEEEEEecCCCCCCHHh
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIG-----E--V---------L---STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL   77 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~-----~--~---------~---~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (193)
                      .++|+++|+.++|||||+++|...     .  .         .   +.+.|.......+.+....+.++|+||+..|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            479999999999999999999741     0  0         0   0122333334455667899999999999999999


Q ss_pred             HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-h----HHHhhhCCCcCCCCc
Q 029446           78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-M----EVCEGLGLFDLKNRK  152 (193)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~~  152 (193)
                      ....+..+|++++|+|+.+...-+. .+.+..+...   ...|+|+++||+|+...... +    ++...+.........
T Consensus        83 ~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            8888899999999999986543222 1222222221   34678999999998764221 1    222322222233456


Q ss_pred             eEEEEeccccC----------CCHHHHHHHHHHHH
Q 029446          153 WHIQGTCALKG----------DGLYEGLDWLASTL  177 (193)
Q Consensus       153 ~~~~~~Sa~~~----------~gi~~~~~~l~~~~  177 (193)
                      ++++++||++|          ++++++++.|.+++
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            78999999998          58888888887664

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=3.7e-20  Score=129.99  Aligned_cols=141  Identities=22%  Similarity=0.155  Sum_probs=98.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC--------Ccc-----c-------cccccceeEEEEEEcCEEEEEEecCCCCCCHH
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIG--------EVL-----S-------TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRP   76 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~--------~~~-----~-------~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~   76 (193)
                      .++|+++|++++|||||+++|+..        ...     +       ...|.......+.+++..+.++||||+..|-.
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~   82 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK   82 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHH
Confidence            479999999999999999999631        000     1       13466666777888999999999999999999


Q ss_pred             hHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCcCCC
Q 029446           77 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMT-PM----EVCEGLGLFDLKN  150 (193)
Q Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~  150 (193)
                      .....+..+|++++|+|+.+....+... .+..+..    .+.| +|+++||+|+.+... .+    ++...+.......
T Consensus        83 ~~~~~~~~aD~avlVvda~~Gv~~qt~~-~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  157 (204)
T d2c78a3          83 NMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  157 (204)
T ss_dssp             HHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence            9989999999999999998765544432 2333322    3554 778899999976422 12    2223232222334


Q ss_pred             CceEEEEecccc
Q 029446          151 RKWHIQGTCALK  162 (193)
Q Consensus       151 ~~~~~~~~Sa~~  162 (193)
                      ..++++..|+..
T Consensus       158 ~~i~~i~~sa~~  169 (204)
T d2c78a3         158 DEVPVIRGSALL  169 (204)
T ss_dssp             TTSCEEECCHHH
T ss_pred             ccceeeeeechh
Confidence            456788888864

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=4.4e-19  Score=128.94  Aligned_cols=109  Identities=23%  Similarity=0.213  Sum_probs=86.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc--CCcc-------------------ccccccceeEEEEEEcCEEEEEEecCCCCCCHHh
Q 029446           19 RVVMLGLDAAGKTTILYKLHI--GEVL-------------------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL   77 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (193)
                      +|+++|+.++|||||+.++..  +...                   +...|+......+.+++.+++++||||+..|...
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e   87 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIE   87 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHH
Confidence            799999999999999999963  1110                   1133555667788899999999999999999999


Q ss_pred             HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                      ....++.+|++|+|+|+.+.-.-+... .|.....    .+.|.|+++||+|...
T Consensus        88 ~~~~l~~~D~avlVvda~~Gv~~~T~~-~w~~a~~----~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          88 VERSMRVLDGAIVVFDSSQGVEPQSET-VWRQAEK----YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             HHHHHHHCCEEEEEEETTTSSCHHHHH-HHHHHHT----TTCCEEEEEECTTSTT
T ss_pred             HHHHHHhhhheEEeccccCCcchhHHH-HHHHHHH----cCCCEEEEEecccccc
Confidence            999999999999999998765544443 3444432    5899999999999873

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.81  E-value=1.1e-18  Score=123.70  Aligned_cols=151  Identities=20%  Similarity=0.135  Sum_probs=101.5

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcC--Ccc----------------------------------ccccccceeEEEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIG--EVL----------------------------------STVPTIGFNVEKV   56 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~--~~~----------------------------------~~~~t~~~~~~~~   56 (193)
                      .....++|+++|+.++|||||+++|+..  ...                                  ....|........
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            3456689999999999999999999531  000                                  0011222233344


Q ss_pred             EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCC-CeEEEEEeCCCCCCCCC
Q 029446           57 QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN-SVILVFANKQDMKGAMT  135 (193)
Q Consensus        57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~~~  135 (193)
                      ......+.++|+||+..|-.........+|++++|+|+.+...-+.  .....+...   .+ ..+|++.||+|+.+..+
T Consensus        85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt--~e~~~~~~~---~gv~~iiv~vNK~D~~~~~~  159 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASL---LGIKHIVVAINKMDLNGFDE  159 (222)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHH---TTCCEEEEEEECTTTTTSCH
T ss_pred             eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch--HHHHHHHHH---cCCCEEEEEEEccccccccc
Confidence            4567899999999999999999988999999999999976533222  222223322   34 34889999999987543


Q ss_pred             H--hH----HHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446          136 P--ME----VCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       136 ~--~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      .  .+    +...+....+....++++++||.+|+|+.+
T Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         160 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             eehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            2  12    222222223345677899999999999843

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=4e-20  Score=130.31  Aligned_cols=120  Identities=23%  Similarity=0.293  Sum_probs=87.4

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhh----cCCCEEEE
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF----NNTDGLIY   90 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~----~~~d~~i~   90 (193)
                      ++++.|+++|++|||||||+|+|+++.+... .|.......+...+..+.+||+||+..++..+..++    ..++.+++
T Consensus         1 ~~~p~V~lvG~~n~GKTSLln~l~~~~~~~~-tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~   79 (209)
T d1nrjb_           1 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF   79 (209)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCe-EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccce
Confidence            3678999999999999999999998876532 233344455566778899999999988766655443    45689999


Q ss_pred             EEECCC-hhhHHHHHHHHHHHH---cCCCCCCCeEEEEEeCCCCCCCCC
Q 029446           91 VVDSLD-RERIGKAKQEFQAII---KDPFMLNSVILVFANKQDMKGAMT  135 (193)
Q Consensus        91 v~d~~~-~~s~~~~~~~~~~~~---~~~~~~~~p~ivv~nK~Dl~~~~~  135 (193)
                      ++|+.+ ..+++....++..+.   ......+.|+++|+||+|+.+...
T Consensus        80 ~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~  128 (209)
T d1nrjb_          80 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  128 (209)
T ss_dssp             EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             EEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence            999764 555566555544332   222346899999999999987544

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.5e-19  Score=124.44  Aligned_cols=156  Identities=15%  Similarity=0.053  Sum_probs=99.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc---cccccce-eEEEEEEcCEEEEEEecCCCCCCHHhH---------Hhhh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS---TVPTIGF-NVEKVQYKNVIFTVWDVGGQEKLRPLW---------RHYF   82 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~---------~~~~   82 (193)
                      +.-.|+++|.+|+|||||+|+|++.....   ...|... ...........+..||++|........         ....
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI   83 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccch
Confidence            44569999999999999999999877542   2223322 234445577888889999854322111         1122


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecccc
Q 029446           83 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALK  162 (193)
Q Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (193)
                      ..+++++++.|..+....  ...+...+..    ...|.++|+||.|......  ++.........+....+++++||++
T Consensus        84 ~~~~~~l~~~d~~~~~~~--~~~~~~~l~~----~~~~~i~v~~k~d~~~~~~--~~~~~~~~~~~~~~~~~~~~vSA~~  155 (179)
T d1egaa1          84 GDVELVIFVVEGTRWTPD--DEMVLNKLRE----GKAPVILAVNKVDNVQEKA--DLLPHLQFLASQMNFLDIVPISAET  155 (179)
T ss_dssp             CCEEEEEEEEETTCCCHH--HHHHHHHHHS----SSSCEEEEEESTTTCCCHH--HHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             hhcceeEEEEecCccchh--HHHHHHHhhh----ccCceeeeeeeeeccchhh--hhhhHhhhhhhhcCCCCEEEEeCcC
Confidence            357888888888754332  2233333332    4567899999999776521  1111111001112335899999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 029446          163 GDGLYEGLDWLASTLKE  179 (193)
Q Consensus       163 ~~gi~~~~~~l~~~~~~  179 (193)
                      |+|++++++.|.+++.+
T Consensus       156 g~gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         156 GLNVDTIAAIVRKHLPE  172 (179)
T ss_dssp             TTTHHHHHHHHHTTCCB
T ss_pred             CCCHHHHHHHHHHhCCC
Confidence            99999999999888744

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.78  E-value=5.7e-18  Score=122.72  Aligned_cols=108  Identities=18%  Similarity=0.203  Sum_probs=84.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC--Cc------------c-------ccccccceeEEEEEEcCEEEEEEecCCCCCCHHh
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG--EV------------L-------STVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPL   77 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~--~~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (193)
                      +|+++|+.++|||||+.++...  ..            .       ....|+......+.+++.++.++||||+..|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            6899999999999999999521  11            0       0133556667788889999999999999999999


Q ss_pred             HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           78 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      ....++.+|++++|+|+.+.-..+... .|.....    .++|.++++||+|..
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t~~-~~~~~~~----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGTER-AWTVAER----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH----TTCCEEEEEECGGGC
T ss_pred             hhhhhcccCceEEEeeccCCccchhHH-HHHhhhh----ccccccccccccccc
Confidence            999999999999999998765444433 3333333    578999999999964

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.2e-18  Score=120.33  Aligned_cols=163  Identities=15%  Similarity=0.037  Sum_probs=90.3

Q ss_pred             hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccc---ccccee-EEEEEEcCEEEEEEecCCCC-C-----C--HHh
Q 029446           10 DVFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV---PTIGFN-VEKVQYKNVIFTVWDVGGQE-K-----L--RPL   77 (193)
Q Consensus        10 ~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~---~t~~~~-~~~~~~~~~~~~i~D~~g~~-~-----~--~~~   77 (193)
                      .+.+.+..++|+++|.+|||||||+|++++.......   ++.... ..............+.++.. .     .  ...
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA   88 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred             hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence            4456778899999999999999999999987654321   222222 22222344444444443311 1     1  111


Q ss_pred             HH---hhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC-cCCCCce
Q 029446           78 WR---HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF-DLKNRKW  153 (193)
Q Consensus        78 ~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~  153 (193)
                      ..   ......+.++.+.+........ ...++.....    ...++++++||+|+.+........+.+... .......
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~  163 (188)
T d1puia_          89 LGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  163 (188)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             hhhhhhhhhheeEEEEeecccccchhH-HHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCC
Confidence            11   1112344555566665443322 2233333332    467799999999988753332222111100 1123456


Q ss_pred             EEEEeccccCCCHHHHHHHHHHHH
Q 029446          154 HIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus       154 ~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      +++++||++|.|++++++.|.+.+
T Consensus       164 ~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         164 QVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHHh
Confidence            899999999999999999987764

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.7e-18  Score=124.06  Aligned_cols=149  Identities=19%  Similarity=0.159  Sum_probs=101.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc---C-------------------Cc------------cccccccceeEEEEEEcCE
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI---G-------------------EV------------LSTVPTIGFNVEKVQYKNV   61 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~---~-------------------~~------------~~~~~t~~~~~~~~~~~~~   61 (193)
                      ..++|+++|+.++|||||+.+|+.   .                   .+            .+.+.|.......+.+...
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~   84 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   84 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence            358999999999999999999952   1                   00            0113455666777888899


Q ss_pred             EEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHH------HHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCCC
Q 029446           62 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG------KAKQEFQAIIKDPFMLNS-VILVFANKQDMKGAM  134 (193)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~  134 (193)
                      ++.+.|+||+..|.......+..+|++++|+|+.... ++      ........+...   .++ ++|+++||+|+.+.+
T Consensus        85 ~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~-~e~g~~~~~QT~eh~~~~~~---~gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          85 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE-FEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHH-HHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTTC
T ss_pred             EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCc-cccccCchHhHHHHHHHHHH---cCCCeEEEEEECCCCCCCC
Confidence            9999999999999999999999999999999997532 11      111111122221   244 478999999998754


Q ss_pred             CH--hHHH----hhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446          135 TP--MEVC----EGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       135 ~~--~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      ..  .++.    ..+.........++++++|+..|.|+-+
T Consensus       161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            32  2222    2221111233456899999999988643

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=2.7e-18  Score=122.18  Aligned_cols=152  Identities=20%  Similarity=0.244  Sum_probs=95.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC--c-------------------------c-------ccccccceeEEEEEEcCEE
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGE--V-------------------------L-------STVPTIGFNVEKVQYKNVI   62 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~--~-------------------------~-------~~~~t~~~~~~~~~~~~~~   62 (193)
                      .++|+++|+.++|||||+.+|+...  .                         .       ....|.......+.++...
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            5799999999999999999985310  0                         0       0122333444556677899


Q ss_pred             EEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHH---HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---
Q 029446           63 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK---AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---  136 (193)
Q Consensus        63 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---  136 (193)
                      +.+.||||+..|.......+.-+|++++|+|+.+...-+.   ..+..+.+.-.......++|+++||+|+......   
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~~  162 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKR  162 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHH
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCccccHHH
Confidence            9999999999999999999999999999999986421110   1111111110001123468999999998764211   


Q ss_pred             -hHH----HhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446          137 -MEV----CEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       137 -~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                       +++    ...+.........++++++||..|.|+.+
T Consensus       163 ~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         163 YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence             111    11111112244567899999999998753

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.72  E-value=1.1e-17  Score=120.33  Aligned_cols=157  Identities=17%  Similarity=0.191  Sum_probs=87.2

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhc---CCcc-------------------------------ccccccceeEEEEEE
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHI---GEVL-------------------------------STVPTIGFNVEKVQY   58 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~---~~~~-------------------------------~~~~t~~~~~~~~~~   58 (193)
                      ..+..++|+++|+.++|||||+.+|+.   ....                               ....+.........+
T Consensus        20 ~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~   99 (245)
T d1r5ba3          20 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET   99 (245)
T ss_dssp             SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred             cCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc
Confidence            445577999999999999999999942   1000                               001222222334555


Q ss_pred             cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh---hH--HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           59 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI--GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      ....+.+.|+||+..|-.........+|++++|+|+.+..   ++  .........+....  .-.++|+++||+|+...
T Consensus       100 ~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~--~i~~iiv~iNKmD~~~~  177 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ--GINHLVVVINKMDEPSV  177 (245)
T ss_dssp             SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT--TCSSEEEEEECTTSTTC
T ss_pred             ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc--CCCeEEEEEEcCCCCcc
Confidence            6789999999999999999988889999999999997642   00  00111111222211  12348899999999764


Q ss_pred             CC----HhHHHhhhCCC--c---C-CCCceEEEEeccccCCCHHHHHH
Q 029446          134 MT----PMEVCEGLGLF--D---L-KNRKWHIQGTCALKGDGLYEGLD  171 (193)
Q Consensus       134 ~~----~~~~~~~~~~~--~---~-~~~~~~~~~~Sa~~~~gi~~~~~  171 (193)
                      +.    .+++..++...  .   . ....++++++||++|+||.++++
T Consensus       178 ~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         178 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            32    12222222110  0   0 12357899999999999977543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=2.4e-16  Score=117.40  Aligned_cols=164  Identities=15%  Similarity=0.108  Sum_probs=100.0

Q ss_pred             HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC------Ccc--ccccccc---------------------eeEEE
Q 029446            5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG------EVL--STVPTIG---------------------FNVEK   55 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~------~~~--~~~~t~~---------------------~~~~~   55 (193)
                      +.++++  ...+.+.|+|.|+||||||||+++|...      ...  ...|+..                     .....
T Consensus        44 l~~~~~--~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~  121 (327)
T d2p67a1          44 LDAIMP--YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRP  121 (327)
T ss_dssp             HHHHGG--GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEE
T ss_pred             HHHhhh--ccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccc
Confidence            444444  4467999999999999999999999741      111  0111111                     11111


Q ss_pred             EE--------------------EcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCC
Q 029446           56 VQ--------------------YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF  115 (193)
Q Consensus        56 ~~--------------------~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  115 (193)
                      ..                    ..+..+.+.+|.|.-.....   +...+|.+++|.++...+..+.....+.++.    
T Consensus       122 ~~~~g~lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~~---i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~a----  194 (327)
T d2p67a1         122 VPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKKGLMEVA----  194 (327)
T ss_dssp             ECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCHHHHHHC----
T ss_pred             cccccccccchhhhhHHHHHHHhcCCCeEEEeeccccccchh---hhhccceEEEEecCCCchhhhhhchhhhccc----
Confidence            00                    01456788888885444332   3466999999998876666665555555542    


Q ss_pred             CCCCeEEEEEeCCCCCCCCCHhH----HHhhhC--CCcCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhhc
Q 029446          116 MLNSVILVFANKQDMKGAMTPME----VCEGLG--LFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       116 ~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~  182 (193)
                           =++|+||+|+........    ....+.  ......+..+++.|||.+|+|++++.+.|.++......
T Consensus       195 -----Di~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l~~  262 (327)
T d2p67a1         195 -----DLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA  262 (327)
T ss_dssp             -----SEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHH
T ss_pred             -----cEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence                 279999999887533221    222221  12234566789999999999999999999887764443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1e-15  Score=117.24  Aligned_cols=156  Identities=15%  Similarity=0.052  Sum_probs=91.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc--------ccccceeEEEEEE-cCEEEEEEecCCCCCCH-----HhHHh
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLST--------VPTIGFNVEKVQY-KNVIFTVWDVGGQEKLR-----PLWRH   80 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~~--------~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~-----~~~~~   80 (193)
                      ...++|+|+|.+|+|||||+|+|.+......        ..|...  ..+.. +...+.+|||||-....     .....
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~--~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSSCTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee--eeeeccCCCeEEEEeCCCcccccccHHHHHHHh
Confidence            3579999999999999999999998543211        112211  12222 34458899999943221     12233


Q ss_pred             hhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC---------CCHhH----H----Hhhh
Q 029446           81 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA---------MTPME----V----CEGL  143 (193)
Q Consensus        81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---------~~~~~----~----~~~~  143 (193)
                      .+..+|.++++.|..-..   .-...+..+..    .++|+++|.||+|....         ...++    +    ...+
T Consensus       132 ~~~~~d~~l~~~~~~~~~---~d~~l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l  204 (400)
T d1tq4a_         132 KFYEYDFFIIISATRFKK---NDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF  204 (400)
T ss_dssp             TGGGCSEEEEEESSCCCH---HHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhhcceEEEEecCCCCCH---HHHHHHHHHHH----cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHH
Confidence            456789988887753222   11233333332    47899999999996411         11111    1    1111


Q ss_pred             CCCcCCCCceEEEEecccc--CCCHHHHHHHHHHHHHhhh
Q 029446          144 GLFDLKNRKWHIQGTCALK--GDGLYEGLDWLASTLKEMR  181 (193)
Q Consensus       144 ~~~~~~~~~~~~~~~Sa~~--~~gi~~~~~~l~~~~~~~~  181 (193)
                      ..  ..-...++|.+|..+  ..|++++.+.+.+.+.+..
T Consensus       205 ~~--~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         205 RE--NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             HH--TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HH--cCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHH
Confidence            10  111223588888765  4589999999988876543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.62  E-value=4.9e-15  Score=110.15  Aligned_cols=158  Identities=13%  Similarity=0.094  Sum_probs=101.3

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCc-----c---cccccc-------------------c--eeEEEE-------
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEV-----L---STVPTI-------------------G--FNVEKV-------   56 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~-----~---~~~~t~-------------------~--~~~~~~-------   56 (193)
                      ...+.+.|.|.|+||+|||||++++.....     .   ...|+.                   +  +.....       
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~g  126 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG  126 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeecccccccccc
Confidence            456789999999999999999999975210     0   000000                   0  001100       


Q ss_pred             -------------EEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEE
Q 029446           57 -------------QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILV  123 (193)
Q Consensus        57 -------------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iv  123 (193)
                                   ...+..+.++.|.|.-.......   ..+|..++|..+...+..+....-+.++.         =|+
T Consensus       127 g~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~---~~~D~~v~v~~p~~GD~iQ~~k~gilE~a---------Di~  194 (323)
T d2qm8a1         127 GVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVA---DLTDFFLVLMLPGAGDELQGIKKGIFELA---------DMI  194 (323)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH---TTSSEEEEEECSCC------CCTTHHHHC---------SEE
T ss_pred             chhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhh---cccceEEEEeeccchhhhhhhhhhHhhhh---------hee
Confidence                         01257899999999766665544   44999999999988776666555555542         289


Q ss_pred             EEeCCCCCCCCCHhH-----HHhhhCCC--cCCCCceEEEEeccccCCCHHHHHHHHHHHHHhhhc
Q 029446          124 FANKQDMKGAMTPME-----VCEGLGLF--DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA  182 (193)
Q Consensus       124 v~nK~Dl~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~  182 (193)
                      |+||+|+.+......     ....+...  ....+..+++.|||++++|++++.++|.++......
T Consensus       195 vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~  260 (323)
T d2qm8a1         195 AVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTA  260 (323)
T ss_dssp             EEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             eEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            999999887643221     22222222  223466789999999999999999999888765443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=1.9e-14  Score=107.35  Aligned_cols=120  Identities=18%  Similarity=0.192  Sum_probs=83.9

Q ss_pred             HHHHhhhhcCCCcc-EEEEEcCCCCCHHHHHHHHhc--CCcc----------c-------cccccceeEEEEEE------
Q 029446            5 FRKLFDVFFGNSEM-RVVMLGLDAAGKTTILYKLHI--GEVL----------S-------TVPTIGFNVEKVQY------   58 (193)
Q Consensus         5 ~~~~~~~~~~~~~~-~v~v~G~~~~GKssli~~l~~--~~~~----------~-------~~~t~~~~~~~~~~------   58 (193)
                      ++.+++   ....+ +|+|+|+.++|||||+.+|..  +...          +       ...|.......+.+      
T Consensus         7 ~~~lm~---~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~   83 (341)
T d1n0ua2           7 MRSLMD---KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDED   83 (341)
T ss_dssp             HHHHHH---CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHH
T ss_pred             HHHHhc---CcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCccc
Confidence            455554   23456 599999999999999999962  1110          0       11233333333322      


Q ss_pred             ----------cCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 029446           59 ----------KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ  128 (193)
Q Consensus        59 ----------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  128 (193)
                                +...+.++||||+..|.......++-+|++++|+|+.+.-..+... .+.....    .+.|+|+++||+
T Consensus        84 ~~~~~~~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~-~~~~a~~----~~~p~i~viNKi  158 (341)
T d1n0ua2          84 VKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALG----ERIKPVVVINKV  158 (341)
T ss_dssp             HHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCEEEEEEECH
T ss_pred             ccchhccccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHH-HHHHHHH----cCCCeEEEEECc
Confidence                      3467999999999999999999999999999999998765544443 3333333    478999999999


Q ss_pred             CCCC
Q 029446          129 DMKG  132 (193)
Q Consensus       129 Dl~~  132 (193)
                      |...
T Consensus       159 Dr~~  162 (341)
T d1n0ua2         159 DRAL  162 (341)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            9653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.55  E-value=7.7e-14  Score=100.79  Aligned_cols=119  Identities=10%  Similarity=0.042  Sum_probs=78.1

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc----ccccceeEEEEEEcCEEEEEEecCCCCCC----H---HhHH--
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST----VPTIGFNVEKVQYKNVIFTVWDVGGQEKL----R---PLWR--   79 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~--   79 (193)
                      .....++|+++|.+|+|||||+|.+++......    ..|...........+..+.++||||-...    .   ....  
T Consensus        28 ~~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          28 EDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             TTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             cCCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            345789999999999999999999998765422    33444556666778899999999993211    1   1111  


Q ss_pred             hhhcCCCEEEEEEECCChh---hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           80 HYFNNTDGLIYVVDSLDRE---RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        80 ~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      ......+++++|++++...   .-......+.......  --.++|+|.||+|...+
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~~~~~ivv~t~~D~~~~  162 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSPP  162 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCCG
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh--hhhCEEEEEECcccCCc
Confidence            1123578999999886431   1222223344433211  12568999999998763

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.46  E-value=4.3e-15  Score=106.40  Aligned_cols=115  Identities=12%  Similarity=-0.040  Sum_probs=68.8

Q ss_pred             CEEEEEEecCCCCCCHHhHHh---hh--cCCCEEEEEEECCC---hhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 029446           60 NVIFTVWDVGGQEKLRPLWRH---YF--NNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  131 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~---~~--~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  131 (193)
                      ...+.+.|+||+..+......   ..  ...+.+++++|+..   +..+............+   ...|.++|+||+|+.
T Consensus        94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~  170 (244)
T d1yrba1          94 ENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLL  170 (244)
T ss_dssp             HCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGC
T ss_pred             ccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeeccccc
Confidence            346899999998775443222   11  24678999999853   33332222111111111   357899999999998


Q ss_pred             CCCCHhHHHh----------hhCCC---------------cCCCCceEEEEeccccCCCHHHHHHHHHHHH
Q 029446          132 GAMTPMEVCE----------GLGLF---------------DLKNRKWHIQGTCALKGDGLYEGLDWLASTL  177 (193)
Q Consensus       132 ~~~~~~~~~~----------~~~~~---------------~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  177 (193)
                      ..........          .+...               .-....++++++||++|+|++++++.|.++.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         171 SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            7532222110          00000               0002345799999999999999999988764

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=2e-11  Score=90.56  Aligned_cols=79  Identities=25%  Similarity=0.270  Sum_probs=45.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEE----EE--------------------EcCEEEEEEecCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEK----VQ--------------------YKNVIFTVWDVGG   70 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~----~~--------------------~~~~~~~i~D~~g   70 (193)
                      ++|+++|.||||||||+|++++....  .+ ..|...+...    .+                    .....++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            58999999999999999999987643  22 2333333222    11                    1236799999999


Q ss_pred             CCC----CHHh---HHhhhcCCCEEEEEEECCC
Q 029446           71 QEK----LRPL---WRHYFNNTDGLIYVVDSLD   96 (193)
Q Consensus        71 ~~~----~~~~---~~~~~~~~d~~i~v~d~~~   96 (193)
                      --.    ....   ....++++|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            321    1111   2233468999999999863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=2.4e-10  Score=83.91  Aligned_cols=114  Identities=15%  Similarity=0.139  Sum_probs=72.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccc-ceeEEEE------------------------------------
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGEVLS--TVPTI-GFNVEKV------------------------------------   56 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~~~~--~~~t~-~~~~~~~------------------------------------   56 (193)
                      ..++|+|+|..++|||||+|+|++..+..  ..+++ .++...+                                    
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            45689999999999999999999977532  22222 1111110                                    


Q ss_pred             ---------------EE-cCEEEEEEecCCCCC-------------CHHhHHhhhcCCCEE-EEEEECCChhhHHHHHHH
Q 029446           57 ---------------QY-KNVIFTVWDVGGQEK-------------LRPLWRHYFNNTDGL-IYVVDSLDRERIGKAKQE  106 (193)
Q Consensus        57 ---------------~~-~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~~  106 (193)
                                     .. ....+.++|+||-..             .......|+.+++.+ ++|.++....+-+....+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                           00 122488999999321             124456667777755 456666655555555555


Q ss_pred             HHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446          107 FQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus       107 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      ...+..    ...+.++|+||+|..++
T Consensus       185 ~~~~~~----~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         185 AKEVDP----QGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHCT----TCSSEEEEEECGGGSCT
T ss_pred             HHHhCc----CCCceeeEEeccccccc
Confidence            555422    45679999999998875

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.13  E-value=4.2e-10  Score=82.50  Aligned_cols=82  Identities=21%  Similarity=0.317  Sum_probs=59.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc---cc-ccccceeEEEEEEc-----------------CEEEEEEecCCCC-
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL---ST-VPTIGFNVEKVQYK-----------------NVIFTVWDVGGQE-   72 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~---~~-~~t~~~~~~~~~~~-----------------~~~~~i~D~~g~~-   72 (193)
                      +..++|+++|.||||||||+|++++....   .+ ..|...+...+...                 ...+.+.|.||-. 
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            46799999999999999999999976432   23 35666666655542                 4689999999811 


Q ss_pred             ---C---CHHhHHhhhcCCCEEEEEEECCC
Q 029446           73 ---K---LRPLWRHYFNNTDGLIYVVDSLD   96 (193)
Q Consensus        73 ---~---~~~~~~~~~~~~d~~i~v~d~~~   96 (193)
                         +   ........+++||+++.|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence               1   11233444589999999999864

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.08  E-value=2.9e-11  Score=87.76  Aligned_cols=106  Identities=19%  Similarity=0.145  Sum_probs=76.8

Q ss_pred             HhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEE
Q 029446           76 PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHI  155 (193)
Q Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  155 (193)
                      ......++.+|++++|+|+..|.+..+  ..+.+++     .++|.|+|+||+|+.+....+++.+.+.     ..+..+
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~-----~~~~~~   74 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFE-----NQGIRS   74 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHH-----TTTCCE
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHH-----hcCCcc
Confidence            344567899999999999987755433  3444544     3679999999999998755555555543     234468


Q ss_pred             EEeccccCCCHHHHHHHHHHHHHhhh----------------ccCCCCCCcCCC
Q 029446          156 QGTCALKGDGLYEGLDWLASTLKEMR----------------AAGYSSVGTSSF  193 (193)
Q Consensus       156 ~~~Sa~~~~gi~~~~~~l~~~~~~~~----------------~~~~~~~~~~~~  193 (193)
                      +.+|+.++.+..++...+.+.+.+..                --|.|++|||||
T Consensus        75 i~isa~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsl  128 (273)
T d1puja_          75 LSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTL  128 (273)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHH
T ss_pred             ceeecccCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhh
Confidence            89999999998888877776665431                128999999974

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.08  E-value=3.5e-10  Score=83.25  Aligned_cols=69  Identities=19%  Similarity=0.173  Sum_probs=44.4

Q ss_pred             EEEEEEecCCCCC-------------CHHhHHhhhcCCCEEEEEE-ECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 029446           61 VIFTVWDVGGQEK-------------LRPLWRHYFNNTDGLIYVV-DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN  126 (193)
Q Consensus        61 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n  126 (193)
                      ..+.++|+||-..             .......|+.+++.+++++ ++.....-+....+...+..    ...++++|+|
T Consensus       131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~----~~~r~i~Vit  206 (306)
T d1jwyb_         131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP----EGKRTIGVIT  206 (306)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS----SCSSEEEEEE
T ss_pred             CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc----CCCeEEEEEe
Confidence            3678999999332             2345677888999877665 54433333334444555422    3457999999


Q ss_pred             CCCCCCC
Q 029446          127 KQDMKGA  133 (193)
Q Consensus       127 K~Dl~~~  133 (193)
                      |+|....
T Consensus       207 k~D~~~~  213 (306)
T d1jwyb_         207 KLDLMDK  213 (306)
T ss_dssp             CTTSSCS
T ss_pred             ccccccc
Confidence            9998764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.07  E-value=3.1e-10  Score=82.49  Aligned_cols=79  Identities=20%  Similarity=0.212  Sum_probs=55.2

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc--cc-ccccceeEEEEEEc-----------------CEEEEEEecCCCCCCHH
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGEVL--ST-VPTIGFNVEKVQYK-----------------NVIFTVWDVGGQEKLRP   76 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~-----------------~~~~~i~D~~g~~~~~~   76 (193)
                      .+||+++|.|+||||||+|++++....  .| ..|...+...+...                 ...+.++|+||-.....
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999987654  22 35555555555442                 34688999999433221


Q ss_pred             -------hHHhhhcCCCEEEEEEECC
Q 029446           77 -------LWRHYFNNTDGLIYVVDSL   95 (193)
Q Consensus        77 -------~~~~~~~~~d~~i~v~d~~   95 (193)
                             ..-..+++||+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence                   1234468899999999874

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.00  E-value=2.1e-11  Score=85.20  Aligned_cols=103  Identities=25%  Similarity=0.187  Sum_probs=71.0

Q ss_pred             hcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           82 FNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      ..|.|.+++|+++.+|. +...+..++.....    .++|.+||+||+||.++.+.+++.+...   ....+++++.+|+
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~---~~~~~~~v~~vSa   80 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEE---IYSGLYPIVKTSA   80 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHH---HHTTTSCEEECCT
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhc---ccccceeEEEecc
Confidence            47899999999998764 33444444444433    5789999999999987644333332221   1122357999999


Q ss_pred             ccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446          161 LKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  193 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~  193 (193)
                      ++++|++++.+.+..+.  ....|.+++|||||
T Consensus        81 ~~~~g~~~L~~~l~~kt--~~~~G~SGVGKSTL  111 (225)
T d1u0la2          81 KTGMGIEELKEYLKGKI--STMAGLSGVGKSSL  111 (225)
T ss_dssp             TTCTTHHHHHHHHSSSE--EEEECSTTSSHHHH
T ss_pred             ccchhHhhHHHHhcCCe--EEEECCCCCCHHHH
Confidence            99999999888775432  23359999999974

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.91  E-value=6e-10  Score=80.73  Aligned_cols=59  Identities=17%  Similarity=0.282  Sum_probs=38.4

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEE-cCEEEEEEecCCC
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQY-KNVIFTVWDVGGQ   71 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~g~   71 (193)
                      .....++|+|+|.||||||||+|++.+.....+.++.|.+-..... ..-.+.++||||-
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi  167 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGI  167 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEEEECCCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCCCeEEecCCCc
Confidence            4457899999999999999999999998877666666655432211 2345899999993

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.74  E-value=3.6e-11  Score=84.30  Aligned_cols=105  Identities=16%  Similarity=0.164  Sum_probs=70.6

Q ss_pred             hcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCcCCCCceEEEEecc
Q 029446           82 FNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA  160 (193)
Q Consensus        82 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (193)
                      ..|.|.+++|+++.+|. ++..+..++.....    .+++.+||+||+||.+..+.++....+. ......+++++.+|+
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~-~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYA-EDYRNIGYDVYLTSS   82 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHH-HHHHHHTCCEEECCH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHH-HHHhhccccceeeec
Confidence            47899999999997764 44445555444422    5789999999999987643332222111 011234568999999


Q ss_pred             ccCCCHHHHHHHHHHHHHhhhccCCCCCCcCCC
Q 029446          161 LKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  193 (193)
Q Consensus       161 ~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~~~  193 (193)
                      ++++|++++.+++....  ..-.|.+++|||||
T Consensus        83 ~~~~gl~~L~~~l~~~~--~vl~G~SGVGKSSL  113 (231)
T d1t9ha2          83 KDQDSLADIIPHFQDKT--TVFAGQSGVGKSSL  113 (231)
T ss_dssp             HHHTTCTTTGGGGTTSE--EEEEESHHHHHHHH
T ss_pred             CChhHHHHHHHhhccce--EEEECCCCccHHHH
Confidence            99999999887764332  22348899999874

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.40  E-value=1.7e-06  Score=59.67  Aligned_cols=139  Identities=17%  Similarity=0.106  Sum_probs=76.0

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc----------------------ccccceeEEEEE-------------
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVLST----------------------VPTIGFNVEKVQ-------------   57 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~----------------------~~t~~~~~~~~~-------------   57 (193)
                      .+.++.-|+++|++|+||||.+-+|...-....                      ....++.+....             
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~   86 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV   86 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHH
Confidence            345677889999999999999887764211000                      001122221111             


Q ss_pred             ----EcCEEEEEEecCCCCCCHHhHHhhh----c--------CCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeE
Q 029446           58 ----YKNVIFTVWDVGGQEKLRPLWRHYF----N--------NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI  121 (193)
Q Consensus        58 ----~~~~~~~i~D~~g~~~~~~~~~~~~----~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~  121 (193)
                          .++..+.++||+|...+.......+    +        ..+-.++|+|++...  +.+.+........     .+-
T Consensus        87 ~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~-----~~~  159 (213)
T d1vmaa2          87 AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAV-----NVT  159 (213)
T ss_dssp             HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHS-----CCC
T ss_pred             HHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhcccc-----CCc
Confidence                1256799999999766654322111    1        146789999996432  2222222222211     112


Q ss_pred             EEEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446          122 LVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       122 ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      =+++||.|.....-. -.+....+.        |+..++  +|+++++
T Consensus       160 ~lI~TKlDe~~~~G~~l~~~~~~~~--------Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         160 GIILTKLDGTAKGGITLAIARELGI--------PIKFIG--VGEKAED  197 (213)
T ss_dssp             EEEEECGGGCSCTTHHHHHHHHHCC--------CEEEEE--CSSSGGG
T ss_pred             eEEEecccCCCcccHHHHHHHHHCC--------CEEEEe--CCCCccc
Confidence            488999997654322 233344433        555555  6776654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=5.1e-06  Score=57.03  Aligned_cols=136  Identities=16%  Similarity=0.185  Sum_probs=75.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc----------------------cccccceeEEEEE---------------
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVLS----------------------TVPTIGFNVEKVQ---------------   57 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~~----------------------~~~t~~~~~~~~~---------------   57 (193)
                      ..+.-|+++|++|+||||.+-+|.......                      +....++.+....               
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~   86 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA   86 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence            345667899999999999998886311000                      0011122222111               


Q ss_pred             --EcCEEEEEEecCCCCCCHHhHH-------hhhc-----CCCEEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCeEE
Q 029446           58 --YKNVIFTVWDVGGQEKLRPLWR-------HYFN-----NTDGLIYVVDSLDR-ERIGKAKQEFQAIIKDPFMLNSVIL  122 (193)
Q Consensus        58 --~~~~~~~i~D~~g~~~~~~~~~-------~~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~i  122 (193)
                        ..+..+.++||+|.........       ...+     ..+-.++|+|++.. +....+...+..+ .       +-=
T Consensus        87 a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-~-------~~~  158 (211)
T d2qy9a2          87 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-G-------LTG  158 (211)
T ss_dssp             HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-C-------CCE
T ss_pred             HHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-C-------Cce
Confidence              1245789999999655443221       1122     25689999999643 3333333333222 1       124


Q ss_pred             EEEeCCCCCCCCCH-hHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446          123 VFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       123 vv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      ++.||.|.....-. -.+....+.        |+..++  .|+++++
T Consensus       159 lIlTKlDe~~~~G~~l~~~~~~~~--------Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         159 ITLTKLDGTAKGGVIFSVADQFGI--------PIRYIG--VGERIED  195 (211)
T ss_dssp             EEEECCTTCTTTTHHHHHHHHHCC--------CEEEEE--CSSSGGG
T ss_pred             EEEeecCCCCCccHHHHHHHHHCC--------CEEEEe--CCCCccc
Confidence            88999997665322 233344433        566666  7777754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.31  E-value=5.7e-07  Score=62.39  Aligned_cols=53  Identities=26%  Similarity=0.273  Sum_probs=34.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc-----------ccccceeEEEEEEcCEEEEEEecCCCCCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLST-----------VPTIGFNVEKVQYKNVIFTVWDVGGQEKL   74 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (193)
                      ..+++|++|+|||||+|+|.+.....+           ..|.......+..   .-.++||||-..+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~---gg~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF---GGYVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTT---SCEEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECC---CcEEEeCCccccc
Confidence            568999999999999999987543221           1222222333321   2589999995443

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=4.5e-06  Score=58.02  Aligned_cols=23  Identities=30%  Similarity=0.375  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +-++|.|.-|||||||++++...
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            45788999999999999999864

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.25  E-value=3.7e-06  Score=57.71  Aligned_cols=67  Identities=12%  Similarity=0.107  Sum_probs=39.7

Q ss_pred             CEEEEEEecCCCCCCHHhHHhh------hcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHY------FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  133 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  133 (193)
                      ...+.++||+|...........      ..+.+-+++|.|++..+.-......+.+.+..       -=+++||.|....
T Consensus        92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~-------~~~I~TKlDe~~~  164 (207)
T d1ls1a2          92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV-------TGLVLTKLDGDAR  164 (207)
T ss_dssp             TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCC-------CEEEEECGGGCSS
T ss_pred             cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCCC-------CeeEEeecCcccc
Confidence            5689999999976654432211      23578999999997554322222222222221       1388999996554

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.16  E-value=1.9e-05  Score=54.04  Aligned_cols=136  Identities=18%  Similarity=0.161  Sum_probs=75.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc----------cc------------ccccceeEEEEE---------------
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIGEVL----------ST------------VPTIGFNVEKVQ---------------   57 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~~~~----------~~------------~~t~~~~~~~~~---------------   57 (193)
                      .+.--|+++|++||||||.+-+|......          ++            ....++.+....               
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~   83 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQA   83 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHH
Confidence            34556789999999999998877531110          00            001112221110               


Q ss_pred             --EcCEEEEEEecCCCCCCHHhH----Hhh---h-----cCCCEEEEEEECCCh-hhHHHHHHHHHHHHcCCCCCCCeEE
Q 029446           58 --YKNVIFTVWDVGGQEKLRPLW----RHY---F-----NNTDGLIYVVDSLDR-ERIGKAKQEFQAIIKDPFMLNSVIL  122 (193)
Q Consensus        58 --~~~~~~~i~D~~g~~~~~~~~----~~~---~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~i  122 (193)
                        ..+..+.++||+|...+....    ..+   .     ...+-+++|+|++.. +....+...+..+ ..       -=
T Consensus        84 ~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-~~-------~~  155 (207)
T d1okkd2          84 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-GL-------TG  155 (207)
T ss_dssp             HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-CC-------SE
T ss_pred             HHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-CC-------ce
Confidence              125689999999976554321    111   1     246789999999744 3444444444433 21       14


Q ss_pred             EEEeCCCCCCCC-CHhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446          123 VFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       123 vv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      ++.||.|..... ..-.+....+.        |+..++  +|+++++
T Consensus       156 lI~TKlDet~~~G~~l~~~~~~~~--------Pi~~i~--~Gq~p~D  192 (207)
T d1okkd2         156 VIVTKLDGTAKGGVLIPIVRTLKV--------PIKFVG--VGEGPDD  192 (207)
T ss_dssp             EEEECTTSSCCCTTHHHHHHHHCC--------CEEEEE--CSSSTTC
T ss_pred             EEEeccCCCCCccHHHHHHHHHCC--------CEEEEe--CCCChHh
Confidence            789999976643 22344444443        555555  4655543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.06  E-value=3e-05  Score=53.18  Aligned_cols=136  Identities=16%  Similarity=0.104  Sum_probs=68.0

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccc-----------------------cccceeEEEE--------------
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTV-----------------------PTIGFNVEKV--------------   56 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~~~~~~~-----------------------~t~~~~~~~~--------------   56 (193)
                      .+.+.-|+++|++|+||||.+-+|... +....                       ...++.+...              
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~-~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~   87 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYF-YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGV   87 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHH-HHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH-HHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHH
Confidence            345566788999999999998887631 11000                       0111111110              


Q ss_pred             ---EEcCEEEEEEecCCCCCCHH------hHHhh--hcCCCEEEEEEECCChh-hHHHHHHHHHHHHcCCCCCCCeEEEE
Q 029446           57 ---QYKNVIFTVWDVGGQEKLRP------LWRHY--FNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVF  124 (193)
Q Consensus        57 ---~~~~~~~~i~D~~g~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv  124 (193)
                         ...+..+.++||+|...+..      ....+  .-..+-+++|+|++... ..+.+...+..       .+. -=++
T Consensus        88 ~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~-------~~~-~~lI  159 (211)
T d1j8yf2          88 EKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA-------SKI-GTII  159 (211)
T ss_dssp             HHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH-------CTT-EEEE
T ss_pred             HHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc-------cCc-ceEE
Confidence               01356899999999654331      11111  12467899999997543 22222222221       122 2367


Q ss_pred             EeCCCCCCCCC-HhHHHhhhCCCcCCCCceEEEEeccccCCCHHH
Q 029446          125 ANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  168 (193)
Q Consensus       125 ~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (193)
                      .||.|.....- .-.+..        ..+.|+..++  +|+++++
T Consensus       160 ~TKlDet~~~G~~l~~~~--------~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         160 ITKMDGTAKGGGALSAVA--------ATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             EECTTSCSCHHHHHHHHH--------TTTCCEEEEE--CSSSTTC
T ss_pred             EecccCCCcccHHHHHHH--------HHCcCEEEEe--CCCCccc
Confidence            99999765421 112222        2333666666  6777754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.96  E-value=1.1e-06  Score=61.15  Aligned_cols=52  Identities=23%  Similarity=0.183  Sum_probs=31.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcccc-----------ccccceeEEEEEEcCEEEEEEecCCCCCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLST-----------VPTIGFNVEKVQYKNVIFTVWDVGGQEKL   74 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (193)
                      ..+++|++|+|||||+|+|.+.....+           ..|......  ...+  -.++||||-..+
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~--~~~g--g~iiDTPG~r~~  161 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--HTSG--GLVADTPGFSSL  161 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--EETT--EEEESSCSCSSC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEE--ecCC--CEEEECCccccc
Confidence            457999999999999999998643211           122222222  2233  358899996544

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.92  E-value=2.6e-06  Score=56.80  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +||+|+|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.74  E-value=1.1e-05  Score=53.23  Aligned_cols=27  Identities=15%  Similarity=0.290  Sum_probs=23.9

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ..+.++|++.|++||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            457899999999999999999999753

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.67  E-value=1.1e-05  Score=53.20  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      -++|+++|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.66  E-value=9e-06  Score=54.17  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +|+|.|++|||||||++.|...
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999753

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.60  E-value=1.7e-05  Score=52.24  Aligned_cols=47  Identities=26%  Similarity=0.249  Sum_probs=25.0

Q ss_pred             EE-EEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCC
Q 029446           19 RV-VMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGG   70 (193)
Q Consensus        19 ~v-~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g   70 (193)
                      || .|+|.+|||||||++++...-.     .-|..+..+......+...|..|
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~-----~~g~~v~vik~d~~~~~~~~~~~   49 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV-----REGWRVGTVKHHGHGGEPARPEG   49 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCC----------
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH-----hCCCeEEEEEeccCccccchhhc
Confidence            44 5999999999999999974322     22444445544444444444444

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.59  E-value=1.7e-05  Score=53.47  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .+++|+|+|++||||||+.+.|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999988753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=1.5e-05  Score=52.31  Aligned_cols=21  Identities=33%  Similarity=0.373  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      -++|+|.+|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999985

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.54  E-value=2.6e-05  Score=52.62  Aligned_cols=26  Identities=23%  Similarity=0.158  Sum_probs=22.7

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .+++..|+|+|+|||||||+.++|..
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45667889999999999999999975

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.52  E-value=3.1e-05  Score=52.21  Aligned_cols=27  Identities=19%  Similarity=0.352  Sum_probs=24.1

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +.+-++|+++|+|||||||+...|...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            467899999999999999999999863

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.49  E-value=2.9e-05  Score=51.74  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988865

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.45  E-value=3.4e-05  Score=51.52  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ++|+++|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00032  Score=49.99  Aligned_cols=59  Identities=24%  Similarity=0.214  Sum_probs=42.3

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-c-----cccccceeEEEEEE---cCEEEEEEecCCC
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIGEVL-S-----TVPTIGFNVEKVQY---KNVIFTVWDVGGQ   71 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~~~~-~-----~~~t~~~~~~~~~~---~~~~~~i~D~~g~   71 (193)
                      ......-|.|+|+.++|||+|+|.+.+..+. .     ...|.|+-......   ....+.++||.|.
T Consensus        28 ~~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~   95 (277)
T d1f5na2          28 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL   95 (277)
T ss_dssp             CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccc
Confidence            3445668899999999999999999986642 1     13456654433322   4678999999994

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.43  E-value=3.6e-05  Score=49.59  Aligned_cols=20  Identities=20%  Similarity=0.373  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029446           20 VVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~   39 (193)
                      |++.|++||||||+++++..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=4.1e-05  Score=51.04  Aligned_cols=23  Identities=48%  Similarity=0.538  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ++|+++|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.40  E-value=5.4e-05  Score=50.85  Aligned_cols=24  Identities=42%  Similarity=0.441  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +.++|+++|+|||||||..+.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999999874

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.37  E-value=7.5e-05  Score=52.76  Aligned_cols=35  Identities=14%  Similarity=0.105  Sum_probs=24.3

Q ss_pred             HHHhhhhcCCCcc-EEEEEcCCCCCHHHHHHHHhcC
Q 029446            6 RKLFDVFFGNSEM-RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus         6 ~~~~~~~~~~~~~-~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +++.......... -|++.|+||+|||||+..+.+.
T Consensus        20 ~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          20 EELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             HHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             HHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3343333333333 4889999999999999998763

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=5.7e-05  Score=50.22  Aligned_cols=22  Identities=36%  Similarity=0.472  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ++|+++|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988865

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=6e-05  Score=50.22  Aligned_cols=24  Identities=33%  Similarity=0.443  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++|+++|+|||||||+.+.|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999999753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.31  E-value=6.1e-05  Score=49.35  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -|++.|++||||||+.+.|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999998753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.26  E-value=0.00015  Score=48.55  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=26.6

Q ss_pred             HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446            5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .+.+.+ ..+..++-|+|.|++|||||||.++|..
T Consensus        11 ~~~~~~-~~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          11 CKTILA-IKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             HHHHHT-SCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHh-ccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            344433 4556788899999999999999999864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.00011  Score=48.70  Aligned_cols=26  Identities=27%  Similarity=0.399  Sum_probs=22.3

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .....-|+++|.+||||||+++++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34667899999999999999999864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=8.8e-05  Score=49.88  Aligned_cols=23  Identities=30%  Similarity=0.294  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ++.|+|+|+|||||||..+.+..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988875

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.00011  Score=49.43  Aligned_cols=28  Identities=29%  Similarity=0.171  Sum_probs=23.5

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .+....-|+++|+|||||||+...|...
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4456667999999999999999999763

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.18  E-value=0.00011  Score=49.86  Aligned_cols=23  Identities=48%  Similarity=0.518  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +.-|+++|.|||||||+.++|..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999984

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=8.7e-05  Score=49.06  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .|.|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999999875

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.17  E-value=9.4e-05  Score=48.50  Aligned_cols=22  Identities=36%  Similarity=0.535  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ++|+++|.+||||||+.+.+..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999888854

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00011  Score=47.63  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +|.++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999988753

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00013  Score=50.98  Aligned_cols=22  Identities=18%  Similarity=0.246  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +++|+|+.|||||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999874

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.10  E-value=0.00013  Score=49.48  Aligned_cols=25  Identities=28%  Similarity=0.214  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL   43 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~   43 (193)
                      .++++|+.|||||||++.+++-..+
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~p   53 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLKP   53 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhccccc
Confidence            5789999999999999999875443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.09  E-value=0.00019  Score=47.15  Aligned_cols=25  Identities=20%  Similarity=0.397  Sum_probs=21.3

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .+-+-|.++|.+||||||+.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999888864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.0003  Score=47.26  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=28.1

Q ss_pred             HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446            5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +.++.........-+++++|+||+|||+++..+...
T Consensus        31 i~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHH
Confidence            455555555566678999999999999999888753

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.07  E-value=0.0015  Score=42.20  Aligned_cols=38  Identities=24%  Similarity=0.254  Sum_probs=27.8

Q ss_pred             hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446            4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .+.+.+.........-|++-|+-|||||||++.+..+-
T Consensus        20 ~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            34444443444556678999999999999999998654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.06  E-value=0.00015  Score=47.94  Aligned_cols=21  Identities=29%  Similarity=0.178  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      -|+|.|.+||||||+++.|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378889999999999998854

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00031  Score=49.72  Aligned_cols=37  Identities=19%  Similarity=0.253  Sum_probs=28.7

Q ss_pred             HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446            5 FRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      +.++.........-+++++|++|+|||+++..+...-
T Consensus        27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            4555555565666799999999999999998887543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.04  E-value=0.00018  Score=50.32  Aligned_cols=22  Identities=27%  Similarity=0.298  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++|+|+.|||||||++.+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7899999999999999999763

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.04  E-value=0.00018  Score=47.80  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=18.0

Q ss_pred             cEEE-EEcCCCCCHHHHHHHHhc
Q 029446           18 MRVV-MLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~-v~G~~~~GKssli~~l~~   39 (193)
                      +||+ |.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            4665 569999999999998853

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00017  Score=49.97  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -++++|+.|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5789999999999999998763

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.03  E-value=0.00015  Score=47.33  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      +|+++|++||||||+.+.+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999888864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.02  E-value=0.00018  Score=49.82  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            57899999999999999877643

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.01  E-value=0.00019  Score=50.51  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++|+|+.|||||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            7899999999999999998763

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.0002  Score=50.28  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++|+|+.|||||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            7899999999999999998864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.00  E-value=0.0002  Score=46.91  Aligned_cols=21  Identities=29%  Similarity=0.309  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029446           20 VVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~   40 (193)
                      |++.|++||||||+.+.+...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999988754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.99  E-value=0.00018  Score=47.84  Aligned_cols=22  Identities=36%  Similarity=0.422  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -|+++|++||||||+++.|...
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.00018  Score=48.08  Aligned_cols=21  Identities=38%  Similarity=0.585  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029446           20 VVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~   40 (193)
                      |+|+|++|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00019  Score=46.87  Aligned_cols=24  Identities=17%  Similarity=0.383  Sum_probs=19.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ...-++++|.+||||||+.+.|..
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            344567799999999999999875

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.00023  Score=50.89  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++|+|+.|||||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            6899999999999999999874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.95  E-value=0.00045  Score=50.31  Aligned_cols=25  Identities=24%  Similarity=0.192  Sum_probs=21.5

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      ..+|+|.|+.|||||||++.+...-
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEeeccccchHHHHHHhhhc
Confidence            3469999999999999999998643

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.95  E-value=0.00022  Score=49.60  Aligned_cols=23  Identities=39%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57999999999999999988744

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.95  E-value=0.0078  Score=41.00  Aligned_cols=73  Identities=14%  Similarity=0.039  Sum_probs=48.8

Q ss_pred             CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCCHhH
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMKGAMTPME  138 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~  138 (193)
                      .+.+.++|+|+....  .....+..+|.++++...+ ..++.........+.+    .+.|++ +|.|+.|..+.....+
T Consensus       111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~~~~~~  183 (237)
T d1g3qa_         111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDRDIPPE  183 (237)
T ss_dssp             GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTTCCCHH
T ss_pred             cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhh----hhhhhhhhhhcccccccchhhhH
Confidence            468999999986543  3444567899999999876 4555665555544433    356665 8999998766543333


Q ss_pred             H
Q 029446          139 V  139 (193)
Q Consensus       139 ~  139 (193)
                      .
T Consensus       184 ~  184 (237)
T d1g3qa_         184 A  184 (237)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00036  Score=50.38  Aligned_cols=33  Identities=18%  Similarity=0.124  Sum_probs=25.7

Q ss_pred             HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446            7 KLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus         7 ~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .|+.......++-|+|.|.+|||||||.+.|..
T Consensus        70 ~fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          70 QFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             HHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHhcccCCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            344445556789999999999999999888753

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.93  E-value=0.00026  Score=47.54  Aligned_cols=28  Identities=29%  Similarity=0.290  Sum_probs=24.3

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ...+++-|+|-|..||||||+++.|...
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            4567789999999999999999998754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.93  E-value=0.00024  Score=49.39  Aligned_cols=23  Identities=30%  Similarity=0.265  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      -++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            45789999999999999998744

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.91  E-value=0.00025  Score=49.46  Aligned_cols=24  Identities=33%  Similarity=0.310  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      -++++|+.|||||||++.+.+-..
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            478999999999999999987543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.88  E-value=0.00026  Score=46.34  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -|++.|.+||||||+.+.|...
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3667799999999999998763

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.87  E-value=0.00036  Score=47.68  Aligned_cols=24  Identities=17%  Similarity=0.325  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +.+.|+|-|++||||||....|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999875

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.87  E-value=0.00029  Score=49.03  Aligned_cols=24  Identities=33%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .++++|+.|||||||++.+.+-..
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            579999999999999999886543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00029  Score=49.01  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            57999999999999999988643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00019  Score=49.78  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      -++++|+.|||||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999999987

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00032  Score=46.62  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029446           20 VVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~   40 (193)
                      |+++|++|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999999853

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.83  E-value=0.0002  Score=49.52  Aligned_cols=24  Identities=38%  Similarity=0.317  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      -++++|+.|||||||++.+.+-..
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            479999999999999999987543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00036  Score=47.49  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ++-|+|.|+.|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999998854

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.81  E-value=0.00056  Score=47.34  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ....+++.|+||+||||+++.+.+
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999875

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.00041  Score=48.26  Aligned_cols=25  Identities=28%  Similarity=0.196  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL   43 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~   43 (193)
                      -++++|+.|||||||++.+.+-..+
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~p   54 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIKP   54 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5789999999999999999876543

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.00033  Score=47.02  Aligned_cols=20  Identities=50%  Similarity=0.649  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029446           20 VVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~   39 (193)
                      |+|+|++||||||++++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999865

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.79  E-value=0.0004  Score=46.61  Aligned_cols=23  Identities=22%  Similarity=0.176  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      --|+++|+|||||||+...|...
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999999763

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.78  E-value=0.00034  Score=45.92  Aligned_cols=20  Identities=30%  Similarity=0.409  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029446           20 VVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~   39 (193)
                      |+++|.+||||||+.+.+..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999988864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.78  E-value=0.00025  Score=49.90  Aligned_cols=21  Identities=24%  Similarity=0.521  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      +++|+|+.|||||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            789999999999999988876

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00038  Score=47.33  Aligned_cols=22  Identities=18%  Similarity=0.246  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -|+|+|++|||||||++.|...
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.76  E-value=0.00049  Score=47.38  Aligned_cols=25  Identities=28%  Similarity=0.255  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +...+++.|++|+||||+++.+...
T Consensus        44 ~~~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          44 SMPHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4457999999999999999988764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.75  E-value=0.00039  Score=48.88  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      -++++|+.|||||||++.+.+-..
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHCCCc
Confidence            479999999999999999988543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0002  Score=47.78  Aligned_cols=25  Identities=36%  Similarity=0.363  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +.+.|.++|.+||||||+.+.|...
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467889999999999999998653

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.70  E-value=0.00045  Score=48.67  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      .++++|+.|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            57999999999999999998643

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.67  E-value=0.00053  Score=47.40  Aligned_cols=25  Identities=24%  Similarity=0.202  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ....+++.|+||+||||+++.+...
T Consensus        34 ~~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          34 VLDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHhc
Confidence            3457899999999999999988753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.64  E-value=0.00073  Score=45.06  Aligned_cols=25  Identities=20%  Similarity=0.162  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++-|+|.|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4688999999999999999988654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.00094  Score=45.72  Aligned_cols=27  Identities=22%  Similarity=0.262  Sum_probs=21.6

Q ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           14 GNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        14 ~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ......+++.|++|+||||+++.+...
T Consensus        33 ~~~~~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          33 DGNMPHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             SCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCeEEEECCCCCCchhhHHHHHHH
Confidence            344457999999999999998887643

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.57  E-value=0.00028  Score=49.10  Aligned_cols=25  Identities=36%  Similarity=0.365  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCcc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVL   43 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~   43 (193)
                      .++++|+.|||||||++.+.+-..+
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~~p   57 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLDVP   57 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcCC
Confidence            6799999999999999999875433

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.56  E-value=0.0011  Score=45.50  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ....+++.|++|+||||+++.+...
T Consensus        32 ~~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          32 NLPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             TCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCChHHHHHHHHHH
Confidence            3456899999999999999888764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.56  E-value=0.0012  Score=46.11  Aligned_cols=24  Identities=21%  Similarity=0.241  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..--+++.|++|+|||++++.+..
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEecCCCCChhHHHHHHHH
Confidence            334599999999999999999985

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.0012  Score=45.11  Aligned_cols=25  Identities=20%  Similarity=0.267  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ....+++.|++|+||||++..+...
T Consensus        34 ~~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          34 KLPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCChhHHHHHHHHH
Confidence            3446899999999999999998753

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.42  E-value=0.0017  Score=45.31  Aligned_cols=26  Identities=35%  Similarity=0.328  Sum_probs=21.9

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ...-.+++.|++|+|||++++.+...
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            44557999999999999999988753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.41  E-value=0.0015  Score=45.59  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      -.|++.|+||+|||++++.+.+
T Consensus        41 ~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhh
Confidence            4599999999999999999874

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.40  E-value=0.0015  Score=44.31  Aligned_cols=31  Identities=23%  Similarity=0.355  Sum_probs=25.5

Q ss_pred             hhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           10 DVFFGNSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        10 ~~~~~~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ......+.+-|.+.|.+||||||+.+.|...
T Consensus        17 ~~~~~~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          17 TELRNQRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             HHHHTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHhCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3445567888999999999999999998743

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.0013  Score=45.71  Aligned_cols=26  Identities=19%  Similarity=0.061  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      ..-.+++.|++|+||||+++.+.+..
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            33579999999999999999998643

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.00099  Score=46.28  Aligned_cols=25  Identities=20%  Similarity=0.236  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ....+++.|++|+||||++..+...
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            3447999999999999999888763

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.34  E-value=0.0011  Score=44.68  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +.|+|-|..||||||+++.|..
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999988864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.33  E-value=0.0018  Score=45.39  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ..-.+++.|+||+|||++++.+..
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceeEEecCCCCCchHHHHHHHH
Confidence            344699999999999999999885

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.33  E-value=0.044  Score=38.03  Aligned_cols=85  Identities=12%  Similarity=0.030  Sum_probs=46.7

Q ss_pred             CEEEEEEecCCCCCCHH-hHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCCCCCCCC-H
Q 029446           60 NVIFTVWDVGGQEKLRP-LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMKGAMT-P  136 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~  136 (193)
                      ...+.+.|+|+...... ........+|.++++.+.. ..++.........+.......+.++ -++.|+.+.....+ .
T Consensus       115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~~~  193 (269)
T d1cp2a_         115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELL  193 (269)
T ss_dssp             TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHH
T ss_pred             cCCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCccchh
Confidence            46799999997543322 2223335689888888774 5555544443333322111133333 37889988766422 2


Q ss_pred             hHHHhhhCC
Q 029446          137 MEVCEGLGL  145 (193)
Q Consensus       137 ~~~~~~~~~  145 (193)
                      +++.+.++.
T Consensus       194 ~~~~~~~~~  202 (269)
T d1cp2a_         194 DAFAKELGS  202 (269)
T ss_dssp             HHHHHHHTC
T ss_pred             hhhHhhcCC
Confidence            334455543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.33  E-value=0.0011  Score=49.38  Aligned_cols=36  Identities=22%  Similarity=0.431  Sum_probs=26.7

Q ss_pred             hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446            4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .+.++.........-++++||+||+|||+++..|..
T Consensus        30 ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          30 EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHH
Confidence            345555555556667789999999999999866654

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.27  E-value=0.0011  Score=46.36  Aligned_cols=22  Identities=27%  Similarity=0.288  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      --++|.|++|+|||||++++..
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            3578899999999999998864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.24  E-value=0.0011  Score=47.86  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -.++++|+||+|||.|.+.+...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            46889999999999999998753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.0013  Score=44.74  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +-|+|.|+|||||||....+...
T Consensus         4 piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46788899999999999888753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0016  Score=45.76  Aligned_cols=23  Identities=26%  Similarity=0.301  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .-.+++.|+||+|||++++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            34599999999999999999874

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0026  Score=45.27  Aligned_cols=26  Identities=12%  Similarity=0.162  Sum_probs=21.8

Q ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHh
Q 029446           13 FGNSEMRVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        13 ~~~~~~~v~v~G~~~~GKssli~~l~   38 (193)
                      .+.+++-|+|.|.+|||||||...+.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34567899999999999999987664

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.09  E-value=0.0019  Score=45.36  Aligned_cols=21  Identities=24%  Similarity=0.047  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029446           20 VVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~   40 (193)
                      +++.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999998764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0028  Score=42.88  Aligned_cols=36  Identities=19%  Similarity=0.384  Sum_probs=27.3

Q ss_pred             HHHHhhhhcCCCccE-EEEEcCCCCCHHHHHHHHhcC
Q 029446            5 FRKLFDVFFGNSEMR-VVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus         5 ~~~~~~~~~~~~~~~-v~v~G~~~~GKssli~~l~~~   40 (193)
                      +.++.+.....+... +++.|++|+||||++..+...
T Consensus        11 ~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHh
Confidence            455655556556555 899999999999999987653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0027  Score=44.68  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ..--|++.|++|+|||+|++.+...
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHH
Confidence            3456999999999999999998753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0031  Score=42.65  Aligned_cols=24  Identities=21%  Similarity=0.120  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      |-|+|.|..||||||+.+.|....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            568899999999999999886543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.70  E-value=0.0019  Score=46.02  Aligned_cols=25  Identities=16%  Similarity=0.227  Sum_probs=18.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .+.+-|+|.|.+||||||+.++|..
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHH
Confidence            4566799999999999999987743

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.0029  Score=42.74  Aligned_cols=20  Identities=40%  Similarity=0.471  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029446           20 VVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~   39 (193)
                      |++-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999998874

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.66  E-value=0.0046  Score=41.62  Aligned_cols=23  Identities=30%  Similarity=0.098  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      +-|+|.|..||||||+.+.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            67899999999999999888653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0029  Score=43.43  Aligned_cols=22  Identities=32%  Similarity=0.312  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .|+|-|..||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999998764

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.47  E-value=0.0067  Score=44.63  Aligned_cols=22  Identities=27%  Similarity=0.149  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      --+++.|+||+|||+|.+.+.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.45  E-value=0.0078  Score=42.49  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ...-|+|.|.+|+|||||+..+.+.
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3456789999999999999998754

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0044  Score=41.51  Aligned_cols=22  Identities=32%  Similarity=0.292  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -+.|.|++|+|||+|...+..+
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5688999999999999888753

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0046  Score=41.83  Aligned_cols=21  Identities=43%  Similarity=0.472  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      -|++-|..||||||+++.|..
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477779999999998887754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.18  E-value=0.0056  Score=41.86  Aligned_cols=22  Identities=18%  Similarity=0.236  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -+.|.|++|+|||+|+-.+...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5688999999999999888654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.17  E-value=0.0048  Score=46.71  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      +|+++|++|||||-|.++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999865

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.0087  Score=41.18  Aligned_cols=21  Identities=29%  Similarity=0.303  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999988764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.10  E-value=0.003  Score=45.89  Aligned_cols=21  Identities=29%  Similarity=0.417  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .|+++|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            699999999999999998864

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.09  E-value=0.0062  Score=41.90  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -++|.|++|+|||+|.-.+...
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5688999999999998887643

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0061  Score=41.82  Aligned_cols=22  Identities=32%  Similarity=0.311  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -|+|-|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4788999999999999999753

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.98  E-value=0.013  Score=39.58  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 029446           20 VVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~~   41 (193)
                      +.+.|++|+|||.|++.+++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999987643

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.89  E-value=0.0091  Score=39.16  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      -|++.|++|+||||+.-.+.....
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcCC
Confidence            488999999999999998886543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.014  Score=42.08  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .++++|++|+|||.|.+.+..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            689999999999999999875

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.80  E-value=0.0066  Score=44.05  Aligned_cols=26  Identities=23%  Similarity=0.169  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      ..++|.|-|.-|+||||+++.+...-
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999998643

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.80  E-value=0.0093  Score=43.31  Aligned_cols=25  Identities=20%  Similarity=0.231  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ..++|.|-|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4579999999999999999999864

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.78  E-value=0.011  Score=38.80  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      =|++.|++|+||||+.-.+.....
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcCC
Confidence            478999999999999999886543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.72  E-value=0.0089  Score=40.93  Aligned_cols=24  Identities=17%  Similarity=0.313  Sum_probs=19.8

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .--++|.|+||+|||+|+.++..+
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            445788999999999998887654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.0015  Score=43.52  Aligned_cols=19  Identities=26%  Similarity=0.377  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 029446           20 VVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~   38 (193)
                      .+|+|+.||||||++.++.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3678999999999999985

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.51  E-value=0.011  Score=40.37  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      -+.|.|++|+|||+|...+....
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            56889999999999998887543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.48  E-value=0.0073  Score=42.96  Aligned_cols=18  Identities=22%  Similarity=0.569  Sum_probs=16.2

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 029446           20 VVMLGLDAAGKTTILYKL   37 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l   37 (193)
                      .+++|+.||||||+++++
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            378999999999999877

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.42  E-value=0.012  Score=42.51  Aligned_cols=20  Identities=30%  Similarity=0.443  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029446           20 VVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~   39 (193)
                      +++.|+||+|||.+.+.+.+
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            44579999999999999875

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.42  E-value=0.0099  Score=43.03  Aligned_cols=24  Identities=33%  Similarity=0.223  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           17 EMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      -++|.|-|.-|+||||+++.|...
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC-
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHH
Confidence            467999999999999999999753

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.41  E-value=0.0078  Score=40.30  Aligned_cols=24  Identities=17%  Similarity=0.141  Sum_probs=19.7

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHhc
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      +.=-+++.|++++|||.|++++..
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHH
Confidence            344567899999999999988864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.36  E-value=0.012  Score=39.77  Aligned_cols=23  Identities=35%  Similarity=0.332  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .-|++-|..||||||+++.|...
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHH
Confidence            34889999999999999888643

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.35  E-value=0.23  Score=34.62  Aligned_cols=85  Identities=14%  Similarity=0.091  Sum_probs=44.1

Q ss_pred             CEEEEEEecCCCCCCHHh-HHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCCCCCCCC-H
Q 029446           60 NVIFTVWDVGGQEKLRPL-WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMKGAMT-P  136 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~  136 (193)
                      .+.+.++|+|+....... .......++.++++.... ..++..+...+..+.......+.++ -+|.|+.+.....+ .
T Consensus       118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~~~~~  196 (289)
T d2afhe1         118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELI  196 (289)
T ss_dssp             TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHH
T ss_pred             cCCeEeeccCCccCHHHHHHHHHhhccceeecccchh-HHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhhHHHH
Confidence            468899999875533222 222224577777776554 4455544444443332212234444 38899987543311 2


Q ss_pred             hHHHhhhCC
Q 029446          137 MEVCEGLGL  145 (193)
Q Consensus       137 ~~~~~~~~~  145 (193)
                      +++.+.++.
T Consensus       197 ~~~~~~~g~  205 (289)
T d2afhe1         197 IALANKLGT  205 (289)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHcCC
Confidence            344455543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.34  E-value=0.015  Score=37.87  Aligned_cols=25  Identities=20%  Similarity=0.219  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGEV   42 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~~   42 (193)
                      .-|++.|++|+||||+.-.+.....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999988876544

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.015  Score=39.89  Aligned_cols=21  Identities=24%  Similarity=0.208  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      -+.|.|++|+|||+|.-.+..
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578899999999999988874

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.08  E-value=0.19  Score=33.60  Aligned_cols=78  Identities=13%  Similarity=-0.005  Sum_probs=45.4

Q ss_pred             CEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChhhHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCC-CHh
Q 029446           60 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAM-TPM  137 (193)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~-~~~  137 (193)
                      ...+.++|+|+....  .....+..+|.++++.... ..++......+....+.    +.+ +-+|.|+.+-.... ..+
T Consensus       109 ~~D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~----~~~~~~iv~N~~~~~~~~~~~~  181 (232)
T d1hyqa_         109 STDILLLDAPAGLER--SAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL----GTKVLGVVVNRITTLGIEMAKN  181 (232)
T ss_dssp             TCSEEEEECCSSSSH--HHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH----TCEEEEEEEEEECTTTHHHHHH
T ss_pred             ccceeeecccccccc--hhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhc----ccccccccccccccccccchhh
Confidence            456899999986643  3344556799999999875 44444444433333221    233 34789998743321 223


Q ss_pred             HHHhhhC
Q 029446          138 EVCEGLG  144 (193)
Q Consensus       138 ~~~~~~~  144 (193)
                      ++.+.++
T Consensus       182 ~i~~~~~  188 (232)
T d1hyqa_         182 EIEAILE  188 (232)
T ss_dssp             HHHHHTT
T ss_pred             hHHhhcC
Confidence            4444444

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.86  E-value=0.015  Score=43.03  Aligned_cols=22  Identities=18%  Similarity=0.507  Sum_probs=18.0

Q ss_pred             CccEEEEEcCCCCCHHHHHHHHh
Q 029446           16 SEMRVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        16 ~~~~v~v~G~~~~GKssli~~l~   38 (193)
                      ..++ +|+|+.|+|||+++.++.
T Consensus        25 ~~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHHH
T ss_pred             CCEE-EEECCCCCCHHHHHHHHH
Confidence            3454 688999999999999974

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.80  E-value=0.018  Score=38.85  Aligned_cols=22  Identities=18%  Similarity=0.249  Sum_probs=17.7

Q ss_pred             ccEEEEEcCCCCCHHHHHHHHh
Q 029446           17 EMRVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        17 ~~~v~v~G~~~~GKssli~~l~   38 (193)
                      ---+.|.|++|+|||+|...+.
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3456788999999999987654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.61  E-value=0.021  Score=39.92  Aligned_cols=20  Identities=15%  Similarity=0.222  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029446           19 RVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~   38 (193)
                      -++|.|.+|+|||+|+..+.
T Consensus        37 l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            36789999999999977765

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.53  E-value=0.11  Score=38.48  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=21.7

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcC
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~~   40 (193)
                      ...=-|+|.|+.|+||||.++.+...
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhh
Confidence            34446899999999999999999864

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.50  E-value=0.022  Score=38.95  Aligned_cols=21  Identities=19%  Similarity=0.243  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .|+|.|..||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999864

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.29  E-value=0.015  Score=41.06  Aligned_cols=15  Identities=27%  Similarity=0.507  Sum_probs=13.0

Q ss_pred             EEEEcCCCCCHHHHH
Q 029446           20 VVMLGLDAAGKTTIL   34 (193)
Q Consensus        20 v~v~G~~~~GKssli   34 (193)
                      ++|.|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678899999999763

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.10  E-value=0.026  Score=41.45  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=21.0

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ...-+++++|+.|||||-+.++|..
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHh
Confidence            3456799999999999999998854

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.02  E-value=0.022  Score=40.57  Aligned_cols=15  Identities=27%  Similarity=0.567  Sum_probs=13.1

Q ss_pred             EEEEcCCCCCHHHHH
Q 029446           20 VVMLGLDAAGKTTIL   34 (193)
Q Consensus        20 v~v~G~~~~GKssli   34 (193)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            788899999999763

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.01  E-value=0.05  Score=38.02  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=21.1

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .++--+.+.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            4566778889999999999998875

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.82  E-value=0.032  Score=38.80  Aligned_cols=20  Identities=20%  Similarity=0.293  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029446           19 RVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~   38 (193)
                      -.+|.|++|+|||+|+-.+.
T Consensus        31 ~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            45689999999999987764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.65  E-value=0.035  Score=39.24  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      =|++|+|++|+|||+|+..+..+.
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHHH
Confidence            489999999999999998887643

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.39  E-value=0.068  Score=36.81  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=20.8

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      ....-|+|.|++|+||+.+.+.+..
T Consensus        21 ~~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          21 CAECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             TCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHH
Confidence            4555689999999999999988864

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.32  E-value=0.036  Score=41.29  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029446           19 RVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~   39 (193)
                      .++|+|.+|+|||++++.+..
T Consensus        52 H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHH
Confidence            489999999999999877764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.90  E-value=0.28  Score=34.06  Aligned_cols=75  Identities=16%  Similarity=0.119  Sum_probs=42.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   98 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (193)
                      -+-+.|++++|||+|+-.++.....               .+..+.++|+-+.-.........+ +.|-++ ++.+   .
T Consensus        59 itei~G~~~sGKT~l~l~~~~~aqk---------------~g~~v~yiDtE~~~~~~~a~~~Gv-d~d~i~-~~~~---~  118 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQAQK---------------AGGTCAFIDAEHALDPVYARALGV-NTDELL-VSQP---D  118 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH---------------TTCCEEEEESSCCCCHHHHHHTTC-CGGGCE-EECC---S
T ss_pred             EEEEecCCccchHHHHHHHHHHHHh---------------CCCEEEEEECCccCCHHHHHHhCC-CchhEE-EEcC---C
Confidence            5678999999999998777643221               122357888887444332222222 233332 3443   4


Q ss_pred             hHHHHHHHHHHHHcC
Q 029446           99 RIGKAKQEFQAIIKD  113 (193)
Q Consensus        99 s~~~~~~~~~~~~~~  113 (193)
                      +.+...+.+..+.+.
T Consensus       119 ~~E~~~~~~~~l~~~  133 (268)
T d1xp8a1         119 NGEQALEIMELLVRS  133 (268)
T ss_dssp             SHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhc
Confidence            455666666666654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.61  E-value=0.32  Score=33.80  Aligned_cols=74  Identities=16%  Similarity=0.127  Sum_probs=41.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCccccccccceeEEEEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEEEEEEECCChh
Q 029446           19 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   98 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~   98 (193)
                      -+.+.|++++|||+|+-.++.....               .+..+.++|+-+.-.........+ +.|-+ +++.+   .
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~~~q~---------------~g~~~vyIDtE~~~~~e~a~~~Gv-D~d~i-l~~~~---~  121 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVANAQA---------------AGGVAAFIDAEHALDPDYAKKLGV-DTDSL-LVSQP---D  121 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHHH---------------TTCEEEEEESSCCCCHHHHHHHTC-CGGGC-EEECC---S
T ss_pred             eEEEecCCCcHHHHHHHHHHHHHhc---------------CCCEEEEEECCccCCHHHHHHhCC-CHHHe-EEecC---C
Confidence            4578999999999998666532111               123457889888544333333222 23333 34444   3


Q ss_pred             hHHHHHHHHHHHHc
Q 029446           99 RIGKAKQEFQAIIK  112 (193)
Q Consensus        99 s~~~~~~~~~~~~~  112 (193)
                      +.+.+.+.+..+..
T Consensus       122 ~~E~~~~~~~~l~~  135 (269)
T d1mo6a1         122 TGEQALEIADMLIR  135 (269)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            45555566666654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.51  E-value=0.098  Score=37.39  Aligned_cols=26  Identities=27%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             CCcc-EEEEEcCCCCCHHHHHHHHhcC
Q 029446           15 NSEM-RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        15 ~~~~-~v~v~G~~~~GKssli~~l~~~   40 (193)
                      .++. .++++|++|+|||.+.+.+...
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHH
Confidence            3444 5678899999999999887653

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.50  E-value=0.055  Score=39.51  Aligned_cols=19  Identities=42%  Similarity=0.422  Sum_probs=15.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 029446           19 RVVMLGLDAAGKTTILYKL   37 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l   37 (193)
                      -++|.|+||+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            5788999999999987543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.69  E-value=0.12  Score=34.17  Aligned_cols=33  Identities=9%  Similarity=0.261  Sum_probs=26.6

Q ss_pred             hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 029446            4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l~~   39 (193)
                      .++++.++   .....+++.|++|+|||++...+.+
T Consensus         5 ~l~~~i~~---~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2           5 TLKRIIEK---SEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             HHHHHHHT---CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             HHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHH
Confidence            46666662   3577999999999999999988775

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.55  E-value=0.12  Score=36.15  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029446           19 RVVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l~~~   40 (193)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999998887643

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=88.81  E-value=0.14  Score=35.62  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=17.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Q 029446           18 MRVVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~   39 (193)
                      --+.+.|++++|||+|+-.++.
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHHH
Confidence            3568899999999999766654

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.57  E-value=0.11  Score=36.07  Aligned_cols=31  Identities=19%  Similarity=0.308  Sum_probs=25.7

Q ss_pred             hHHHHhhhhcCCCccEEEEEcCCCCCHHHHH
Q 029446            4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTIL   34 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli   34 (193)
                      .+..+++.......+.-++.|+.|||||-..
T Consensus        91 ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va  121 (264)
T d1gm5a3          91 AHQEIRNDMISEKPMNRLLQGDVGSGKTVVA  121 (264)
T ss_dssp             HHHHHHHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred             HHHHHHHHhhccCcceeeeeccccccccHHH
Confidence            4556677777788899999999999999864

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=88.52  E-value=0.17  Score=34.49  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=26.5

Q ss_pred             hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHH
Q 029446            4 AFRKLFDVFFGNSEMRVVMLGLDAAGKTTILYKL   37 (193)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~v~G~~~~GKssli~~l   37 (193)
                      .+..+++..........++.|+.|+|||-..-+.
T Consensus        63 ~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a   96 (233)
T d2eyqa3          63 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA   96 (233)
T ss_dssp             HHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHH
T ss_pred             HHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHH
Confidence            3455667777788899999999999999874433

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.66  E-value=0.17  Score=30.68  Aligned_cols=24  Identities=8%  Similarity=0.088  Sum_probs=21.2

Q ss_pred             CCccEEEEEcCCCCCHHHHHHHHh
Q 029446           15 NSEMRVVMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        15 ~~~~~v~v~G~~~~GKssli~~l~   38 (193)
                      .+-|.|.+-|..|+|||++.+.|.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHH
Confidence            356889999999999999999885

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.84  E-value=0.25  Score=33.56  Aligned_cols=20  Identities=20%  Similarity=0.479  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029446           20 VVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~   39 (193)
                      ++|.|+..+||||+++.+.-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            67899999999999998854

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=85.47  E-value=0.26  Score=33.22  Aligned_cols=20  Identities=35%  Similarity=0.564  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029446           20 VVMLGLDAAGKTTILYKLHI   39 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~   39 (193)
                      ++|.|+..+||||+++.+.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            68999999999999998754

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.09  E-value=0.22  Score=34.95  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      =|++++|.+|+|||+|+..+..+.
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~~   92 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIINQ   92 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEeecCCCCChHHHHHHHHHhH
Confidence            478999999999999987776543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.93  E-value=0.35  Score=31.41  Aligned_cols=21  Identities=19%  Similarity=0.154  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029446           20 VVMLGLDAAGKTTILYKLHIG   40 (193)
Q Consensus        20 v~v~G~~~~GKssli~~l~~~   40 (193)
                      ++|.|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.02  E-value=2.4  Score=26.09  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=17.3

Q ss_pred             EEEEEcC-CCCCHHHHHHHHhcCCc
Q 029446           19 RVVMLGL-DAAGKTTILYKLHIGEV   42 (193)
Q Consensus        19 ~v~v~G~-~~~GKssli~~l~~~~~   42 (193)
                      ||.|+|. ..+| +++...+.....
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~   25 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPL   25 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCc
Confidence            8999995 8999 555667765554

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=83.83  E-value=0.94  Score=27.99  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=47.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcC------CccccccccceeEE---EEEEcCEEEEEEecCCCCCCHHhHHhhhcCCCEE
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIG------EVLSTVPTIGFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   88 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~------~~~~~~~t~~~~~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   88 (193)
                      .--+++|+=.|||||-+-+....      ...-..|..+..+.   .....+.+..-....   ..........+++|++
T Consensus         8 ~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D~Ry~~~~i~sh~g~~~~a~~~~---~~~~~~~~~~~~~dvI   84 (141)
T d1xx6a1           8 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIK---NSREILKYFEEDTEVI   84 (141)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEES---SSTHHHHHCCTTCSEE
T ss_pred             eEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEeccccccccceeeecccceEEEEEec---chhhhhhhhcccccEE
Confidence            33466899999999975444321      11111122221111   111122222211111   1222333344567754


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 029446           89 IYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKG  132 (193)
Q Consensus        89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  132 (193)
                      ++    +..+-|.... .....+..    .++++++.+-..|-..
T Consensus        85 ~I----DE~QFf~d~~~~~~~~l~~----~g~~Viv~GLd~Df~~  121 (141)
T d1xx6a1          85 AI----DEVQFFDDEIVEIVNKIAE----SGRRVICAGLDMDFRG  121 (141)
T ss_dssp             EE----CSGGGSCTHHHHHHHHHHH----TTCEEEEEECSBCTTS
T ss_pred             EE----eehhhccccHHHHHHhhee----CCcEEEEEEecccccc
Confidence            43    3344444322 33333322    4788999999998544

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=83.74  E-value=0.39  Score=31.51  Aligned_cols=20  Identities=35%  Similarity=0.413  Sum_probs=16.3

Q ss_pred             EEEEEcCC-CCCHHHHHHHHh
Q 029446           19 RVVMLGLD-AAGKTTILYKLH   38 (193)
Q Consensus        19 ~v~v~G~~-~~GKssli~~l~   38 (193)
                      |+.|.|-. |+||||+.-.|.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            67889996 999999966654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=82.76  E-value=0.28  Score=34.79  Aligned_cols=14  Identities=50%  Similarity=0.826  Sum_probs=12.7

Q ss_pred             EEEcCCCCCHHHHH
Q 029446           21 VMLGLDAAGKTTIL   34 (193)
Q Consensus        21 ~v~G~~~~GKssli   34 (193)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68999999999965

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=82.34  E-value=0.31  Score=34.00  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhcCC
Q 029446           18 MRVVMLGLDAAGKTTILYKLHIGE   41 (193)
Q Consensus        18 ~~v~v~G~~~~GKssli~~l~~~~   41 (193)
                      =|++|+|.+|+|||+|+..+....
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             ceEeeccCCCCChHHHHHHHHhhh
Confidence            378999999999999987654443

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=82.23  E-value=0.34  Score=29.47  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=16.5

Q ss_pred             ccEE-EEEcCCCCCHHHHHHHHh
Q 029446           17 EMRV-VMLGLDAAGKTTILYKLH   38 (193)
Q Consensus        17 ~~~v-~v~G~~~~GKssli~~l~   38 (193)
                      .+++ +|.++.|+|||.++-.+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH
Confidence            3444 678999999999876554

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.21  E-value=0.66  Score=32.00  Aligned_cols=19  Identities=26%  Similarity=0.337  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 029446           19 RVVMLGLDAAGKTTILYKL   37 (193)
Q Consensus        19 ~v~v~G~~~~GKssli~~l   37 (193)
                      -+.+.|-.|+||||+.-.+
T Consensus        10 ~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHH
Confidence            4567999999999975554

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=81.87  E-value=0.3  Score=34.72  Aligned_cols=15  Identities=47%  Similarity=0.773  Sum_probs=13.1

Q ss_pred             EEEEcCCCCCHHHHH
Q 029446           20 VVMLGLDAAGKTTIL   34 (193)
Q Consensus        20 v~v~G~~~~GKssli   34 (193)
                      -++.|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            488999999999964

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=80.69  E-value=0.94  Score=30.97  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=15.4

Q ss_pred             CccEE-EEEcCCCCCHHHHHHHH
Q 029446           16 SEMRV-VMLGLDAAGKTTILYKL   37 (193)
Q Consensus        16 ~~~~v-~v~G~~~~GKssli~~l   37 (193)
                      ...+| ++.|-.|+||||+.-.|
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHH
Confidence            33444 45599999999985444

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.61  E-value=0.37  Score=34.32  Aligned_cols=15  Identities=47%  Similarity=0.771  Sum_probs=13.2

Q ss_pred             EEEEcCCCCCHHHHH
Q 029446           20 VVMLGLDAAGKTTIL   34 (193)
Q Consensus        20 v~v~G~~~~GKssli   34 (193)
                      -+++|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            369999999999976